Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056110.t1 | XP_007155369.1 | 56.4 | 117 | 25 | 2 | 41 | 157 | 744 | 834 | 8.80E-23 | 117.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056110.t1 | P49293 | 60.0 | 85 | 34 | 0 | 97 | 181 | 144 | 228 | 1.7e-22 | 107.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056110.t1 | V7CDB5 | 56.4 | 117 | 25 | 2 | 41 | 157 | 744 | 834 | 6.4e-23 | 117.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056110 | MS.gene74938 | 0.803374 | 3.59E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056110.t1 | MTR_4g107290 | 90.278 | 72 | 7 | 0 | 58 | 129 | 740 | 811 | 2.02e-38 | 140 |
| MS.gene056110.t1 | MTR_4g107290 | 88.889 | 72 | 8 | 0 | 58 | 129 | 740 | 811 | 2.69e-38 | 139 |
| MS.gene056110.t1 | MTR_5g076620 | 42.105 | 190 | 94 | 4 | 8 | 181 | 46 | 235 | 7.13e-35 | 126 |
| MS.gene056110.t1 | MTR_5g076620 | 41.146 | 192 | 97 | 4 | 2 | 181 | 48 | 235 | 1.46e-34 | 126 |
| MS.gene056110.t1 | MTR_3g450510 | 54.118 | 85 | 39 | 0 | 97 | 181 | 110 | 194 | 1.68e-26 | 104 |
| MS.gene056110.t1 | MTR_5g090780 | 50.588 | 85 | 42 | 0 | 97 | 181 | 103 | 187 | 2.51e-23 | 95.5 |
| MS.gene056110.t1 | MTR_3g083630 | 43.529 | 85 | 48 | 0 | 97 | 181 | 99 | 183 | 1.93e-20 | 87.4 |
| MS.gene056110.t1 | MTR_3g083650 | 48.438 | 64 | 33 | 0 | 118 | 181 | 8 | 71 | 3.85e-15 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056110.t1 | AT5G62600 | 75.000 | 72 | 18 | 0 | 58 | 129 | 736 | 807 | 1.33e-32 | 123 |
| MS.gene056110.t1 | AT5G17230 | 56.471 | 85 | 37 | 0 | 97 | 181 | 139 | 223 | 1.99e-26 | 104 |
| MS.gene056110.t1 | AT5G17230 | 56.471 | 85 | 37 | 0 | 97 | 181 | 139 | 223 | 1.99e-26 | 104 |
| MS.gene056110.t1 | AT5G17230 | 56.471 | 85 | 37 | 0 | 97 | 181 | 139 | 223 | 1.99e-26 | 104 |
| MS.gene056110.t1 | AT5G17230 | 77.586 | 58 | 13 | 0 | 124 | 181 | 181 | 238 | 2.28e-25 | 101 |
Find 36 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGTAATATGTGAAGCATT+AGG | 0.366470 | 7.3:+55374768 | None:intergenic |
| TTAGTTGATTGCTCTATGAT+TGG | 0.367385 | 7.3:-55375672 | MS.gene056110:CDS |
| GCGCCTTCTCACAAGTATTC+AGG | 0.382690 | 7.3:-55375883 | MS.gene056110:intron |
| CTGTAATATGTGAAGCATTA+GGG | 0.396810 | 7.3:+55374769 | None:intergenic |
| TCAAATTCTACTGAGGTTAC+CGG | 0.399273 | 7.3:-55376747 | MS.gene056110:CDS |
| AAACAATCATCTGCTATATC+AGG | 0.402159 | 7.3:+55375762 | None:intergenic |
| TAGTTGATTGCTCTATGATT+GGG | 0.404013 | 7.3:-55375671 | MS.gene056110:CDS |
| CAGATTTCCTGTTGATATCC+AGG | 0.418869 | 7.3:-55374652 | MS.gene056110:intron |
| ATCAATACCTGGATATCAAC+AGG | 0.418894 | 7.3:+55374645 | None:intergenic |
| GCAGCATCAAACATATCAAA+TGG | 0.454928 | 7.3:+55374693 | None:intergenic |
| TTCGCTTTCGTCTTCTGCAA+CGG | 0.474504 | 7.3:+55376819 | None:intergenic |
| ATCATCTGCTATATCAGGTC+GGG | 0.482319 | 7.3:+55375767 | None:intergenic |
| GGATAGGTGGGAATCAAGAT+TGG | 0.482924 | 7.3:-55374736 | MS.gene056110:CDS |
| CTCAATCAAAACAGATATGA+AGG | 0.488090 | 7.3:+55375926 | None:intergenic |
| TTCAGTTTGGTGTAGGAGGA+CGG | 0.496266 | 7.3:-55374808 | MS.gene056110:intron |
| TGAAGGATATAGTTGTGAAA+AGG | 0.504325 | 7.3:+55375943 | None:intergenic |
| ACATATCAAATGGACGCCCT+TGG | 0.519572 | 7.3:+55374703 | None:intergenic |
| CAGCAACTGCAATGGATAGG+TGG | 0.537534 | 7.3:-55374749 | MS.gene056110:CDS |
| TGAGAAGGCGCGTTGTGTGC+CGG | 0.542492 | 7.3:+55375895 | None:intergenic |
| AGCAACTGCAATGGATAGGT+GGG | 0.555214 | 7.3:-55374748 | MS.gene056110:CDS |
| TGAAAAGGCGCGTTGTGTGC+CGG | 0.557765 | 7.3:+55375958 | None:intergenic |
| ATCAGAAGATAAAACTTCAC+CGG | 0.561053 | 7.3:+55376728 | None:intergenic |
| ATCAATTCGAGAGGAAGATA+CGG | 0.569775 | 7.3:+55376773 | None:intergenic |
| ATCAACAGGAAATCTGTTGA+CGG | 0.581442 | 7.3:+55374659 | None:intergenic |
| TTACAGCAACTGCAATGGAT+AGG | 0.587244 | 7.3:-55374752 | MS.gene056110:CDS |
| ACATATTACAGCAACTGCAA+TGG | 0.587371 | 7.3:-55374757 | MS.gene056110:CDS |
| AATCATCTGCTATATCAGGT+CGG | 0.602901 | 7.3:+55375766 | None:intergenic |
| ACACCTGAATACTTGTGAGA+AGG | 0.616732 | 7.3:+55375880 | None:intergenic |
| TGATCATTCAAATTCTACTG+AGG | 0.618347 | 7.3:-55376754 | MS.gene056110:CDS |
| TCTACTTGAAAGGCAACGAG+TGG | 0.625120 | 7.3:-55374568 | MS.gene056110:intron |
| TTGGGATCACAGTACAGCAT+AGG | 0.632307 | 7.3:-55375653 | MS.gene056110:intron |
| TCGAGAGGAAGATACGGCAG+CGG | 0.657456 | 7.3:+55376779 | None:intergenic |
| AGGACGGATGAACTTGTCGA+TGG | 0.659217 | 7.3:-55374792 | MS.gene056110:CDS |
| ATTTGAATGATCAATTCGAG+AGG | 0.661945 | 7.3:+55376764 | None:intergenic |
| ATAGAGCAATCAACTAACGA+AGG | 0.684184 | 7.3:+55375678 | None:intergenic |
| GGCGAGGGGATAAACAACTG+AGG | 0.741182 | 7.3:+55375708 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTGATTTTTATTTATGT+TGG | + | chr7.3:55376487-55376506 | None:intergenic | 10.0% |
| !! | AACTGTATGAAAAATAATTA+TGG | + | chr7.3:55375896-55375915 | None:intergenic | 15.0% |
| !! | ACTGTATGAAAAATAATTAT+GGG | + | chr7.3:55375895-55375914 | None:intergenic | 15.0% |
| !! | TTTCATGTATATATCTAATT+TGG | + | chr7.3:55376787-55376806 | None:intergenic | 15.0% |
| !!! | TGTTTATTTTTGTTGATTTT+TGG | - | chr7.3:55374994-55375013 | MS.gene056110:intron | 15.0% |
| !! | AAAACCCAATATAACTAAAT+TGG | - | chr7.3:55376378-55376397 | MS.gene056110:intron | 20.0% |
| !! | AACATATATAGAGTTACTTA+AGG | - | chr7.3:55376039-55376058 | MS.gene056110:intron | 20.0% |
| !! | AATATAGATTTGTGATTATG+TGG | - | chr7.3:55375284-55375303 | MS.gene056110:intron | 20.0% |
| !! | AATGTTACTGTTCTTAATTA+TGG | - | chr7.3:55375090-55375109 | MS.gene056110:intron | 20.0% |
| !! | ACATTCCAATTTAGTTATAT+TGG | + | chr7.3:55376386-55376405 | None:intergenic | 20.0% |
| !! | CATTCCAATTTAGTTATATT+GGG | + | chr7.3:55376385-55376404 | None:intergenic | 20.0% |
| !! | TACTAAAAAGTAAAACAAAC+AGG | + | chr7.3:55376170-55376189 | None:intergenic | 20.0% |
| !! | TTATTTATTCTTGAGATATC+AGG | - | chr7.3:55375866-55375885 | MS.gene056110:intron | 20.0% |
| !!! | AAAATAACTGGTATTTTAAG+AGG | + | chr7.3:55376102-55376121 | None:intergenic | 20.0% |
| !!! | AAATAACTGGTATTTTAAGA+GGG | + | chr7.3:55376101-55376120 | None:intergenic | 20.0% |
| !!! | CTGCATTTTACTTTTATTTT+AGG | - | chr7.3:55375947-55375966 | MS.gene056110:CDS | 20.0% |
| !!! | CTGTTTTGATTTTAATTTAG+TGG | - | chr7.3:55375345-55375364 | MS.gene056110:intron | 20.0% |
| !!! | TTTATCTTTTACTAACCAAT+TGG | - | chr7.3:55374933-55374952 | MS.gene056110:intron | 20.0% |
| ! | AAAATGAACTTAGTACATGA+TGG | + | chr7.3:55376444-55376463 | None:intergenic | 25.0% |
| ! | GAACAAAATTAATCAATACC+TGG | + | chr7.3:55376763-55376782 | None:intergenic | 25.0% |
| ! | GTAGAAAACAACATTAATGA+TGG | + | chr7.3:55376811-55376830 | None:intergenic | 25.0% |
| ! | GTATATTTGACATCTGATTA+GGG | + | chr7.3:55376510-55376529 | None:intergenic | 25.0% |
| ! | TCAAATACTATACATAGATC+TGG | + | chr7.3:55375571-55375590 | None:intergenic | 25.0% |
| ! | TGTATATTTGACATCTGATT+AGG | + | chr7.3:55376511-55376530 | None:intergenic | 25.0% |
| !! | ATTGAATGTTCTTGTTTCTT+TGG | - | chr7.3:55375384-55375403 | MS.gene056110:intron | 25.0% |
| !! | GTCTCTTGTTATAAAATAAC+TGG | + | chr7.3:55376114-55376133 | None:intergenic | 25.0% |
| !! | GTTTTATCTTCTGATTGTAA+GGG | - | chr7.3:55374674-55374693 | MS.gene056110:CDS | 25.0% |
| !! | TCAAAATTTTCAGCATTTTG+TGG | - | chr7.3:55376262-55376281 | MS.gene056110:intron | 25.0% |
| !!! | AATGTTGTTTTCTACTTGAA+AGG | - | chr7.3:55376816-55376835 | MS.gene056110:CDS | 25.0% |
| !!! | AGTTTTATCTTCTGATTGTA+AGG | - | chr7.3:55374673-55374692 | MS.gene056110:CDS | 25.0% |
| !!! | ATACCATTTTAGAATAGTGT+AGG | + | chr7.3:55375812-55375831 | None:intergenic | 25.0% |
| !!! | ATTTTCTTTGAATTTCGAGT+AGG | - | chr7.3:55375152-55375171 | MS.gene056110:intron | 25.0% |
| !!! | CACTAATTTCTGAAATTTAG+AGG | + | chr7.3:55376549-55376568 | None:intergenic | 25.0% |
| !!! | TAGGAATAAATTTGTTATGC+TGG | - | chr7.3:55375052-55375071 | MS.gene056110:intron | 25.0% |
| !!! | TGACTTTTTTTTTACCTTCA+AGG | - | chr7.3:55374771-55374790 | MS.gene056110:CDS | 25.0% |
| AAACAATCATCTGCTATATC+AGG | + | chr7.3:55375635-55375654 | None:intergenic | 30.0% | |
| AGTAAAACAAACAGGTTTGA+AGG | + | chr7.3:55376162-55376181 | None:intergenic | 30.0% | |
| ATACTATACATAGATCTGGA+AGG | + | chr7.3:55375567-55375586 | None:intergenic | 30.0% | |
| ATCAGAAGATAAAACTTCAC+CGG | + | chr7.3:55374669-55374688 | None:intergenic | 30.0% | |
| ATTTGAATGATCAATTCGAG+AGG | + | chr7.3:55374633-55374652 | None:intergenic | 30.0% | |
| CTCAATCAAAACAGATATGA+AGG | + | chr7.3:55375471-55375490 | None:intergenic | 30.0% | |
| TAAAATGCAGACATTTATGC+AGG | + | chr7.3:55375937-55375956 | None:intergenic | 30.0% | |
| TAGTTGATTGCTCTATGATT+GGG | - | chr7.3:55375723-55375742 | MS.gene056110:CDS | 30.0% | |
| TGAAGGATATAGTTGTGAAA+AGG | + | chr7.3:55375454-55375473 | None:intergenic | 30.0% | |
| TGATCATTCAAATTCTACTG+AGG | - | chr7.3:55374640-55374659 | MS.gene056110:intron | 30.0% | |
| TTAGTTGATTGCTCTATGAT+TGG | - | chr7.3:55375722-55375741 | MS.gene056110:CDS | 30.0% | |
| TTTGTGATTATGTGGTGTTT+AGG | - | chr7.3:55375292-55375311 | MS.gene056110:intron | 30.0% | |
| ! | CATCCTACACTATTCTAAAA+TGG | - | chr7.3:55375806-55375825 | MS.gene056110:intron | 30.0% |
| ! | CTGTAATATGTGAAGCATTA+GGG | + | chr7.3:55376628-55376647 | None:intergenic | 30.0% |
| ! | TTTTACTAACCAATTGGTTG+TGG | - | chr7.3:55374939-55374958 | MS.gene056110:intron | 30.0% |
| !!! | AGCAGATGATTGTTTTTTGT+TGG | - | chr7.3:55375640-55375659 | MS.gene056110:intron | 30.0% |
| !!! | ATACTACTGCTTTTTCAGTT+TGG | - | chr7.3:55376573-55376592 | MS.gene056110:intron | 30.0% |
| !!! | ATTGTTTTTTGTTGGCTTCA+AGG | - | chr7.3:55375648-55375667 | MS.gene056110:intron | 30.0% |
| !!! | CTTCATATCTGTTTTGATTG+AGG | - | chr7.3:55375469-55375488 | MS.gene056110:intron | 30.0% |
| !!! | TATATTGGGTTTTTTCTCTC+AGG | + | chr7.3:55376371-55376390 | None:intergenic | 30.0% |
| !!! | TTTTTTTTACCTTCAAGGCA+GGG | - | chr7.3:55374776-55374795 | MS.gene056110:CDS | 30.0% |
| !!! | TTTTTTTTTACCTTCAAGGC+AGG | - | chr7.3:55374775-55374794 | MS.gene056110:CDS | 30.0% |
| AAAACAAAGAAAGCAGTCGA+AGG | + | chr7.3:55374864-55374883 | None:intergenic | 35.0% | |
| AACTTGTAGCCAATTCGATT+TGG | - | chr7.3:55376406-55376425 | MS.gene056110:intron | 35.0% | |
| AAGGTCTATCTGGATTGTTT+GGG | + | chr7.3:55374845-55374864 | None:intergenic | 35.0% | |
| AATCATCTGCTATATCAGGT+CGG | + | chr7.3:55375631-55375650 | None:intergenic | 35.0% | |
| ACATATTACAGCAACTGCAA+TGG | - | chr7.3:55376637-55376656 | MS.gene056110:intron | 35.0% | |
| AGAGCATAACCAAATCGAAT+TGG | + | chr7.3:55376418-55376437 | None:intergenic | 35.0% | |
| ATAGAGCAATCAACTAACGA+AGG | + | chr7.3:55375719-55375738 | None:intergenic | 35.0% | |
| ATCAACAGGAAATCTGTTGA+CGG | + | chr7.3:55376738-55376757 | None:intergenic | 35.0% | |
| ATCAATACCTGGATATCAAC+AGG | + | chr7.3:55376752-55376771 | None:intergenic | 35.0% | |
| ATCAATTCGAGAGGAAGATA+CGG | + | chr7.3:55374624-55374643 | None:intergenic | 35.0% | |
| ATTGTGCAATTGTATGTGTG+TGG | + | chr7.3:55375778-55375797 | None:intergenic | 35.0% | |
| GCAGCATCAAACATATCAAA+TGG | + | chr7.3:55376704-55376723 | None:intergenic | 35.0% | |
| GGTTCAATAAGGAAAGTCAT+AGG | - | chr7.3:55375033-55375052 | MS.gene056110:intron | 35.0% | |
| TCAAATTCTACTGAGGTTAC+CGG | - | chr7.3:55374647-55374666 | MS.gene056110:intron | 35.0% | |
| TCAACTAACGAAGGAAAAAC+TGG | + | chr7.3:55375710-55375729 | None:intergenic | 35.0% | |
| TCTGTCATAAAAAGCTGCTA+AGG | - | chr7.3:55374818-55374837 | MS.gene056110:intron | 35.0% | |
| TTGTGCAATTGTATGTGTGT+GGG | + | chr7.3:55375777-55375796 | None:intergenic | 35.0% | |
| ! | AATGTTCTTGTTTCTTTGGC+CGG | - | chr7.3:55375388-55375407 | MS.gene056110:intron | 35.0% |
| ! | GCTGTAATATGTGAAGCATT+AGG | + | chr7.3:55376629-55376648 | None:intergenic | 35.0% |
| ! | TCTTTGAATTTCGAGTAGGT+TGG | - | chr7.3:55375156-55375175 | MS.gene056110:intron | 35.0% |
| !!! | TTTTTTTACCTTCAAGGCAG+GGG | - | chr7.3:55374777-55374796 | MS.gene056110:CDS | 35.0% |
| ACACCTGAATACTTGTGAGA+AGG | + | chr7.3:55375517-55375536 | None:intergenic | 40.0% | |
| AGAGCTATTTGGGCGATATA+TGG | + | chr7.3:55376320-55376339 | None:intergenic | 40.0% | |
| ATCACAGTACAGCATAGGTA+TGG | - | chr7.3:55375746-55375765 | MS.gene056110:CDS | 40.0% | |
| ATCATCTGCTATATCAGGTC+GGG | + | chr7.3:55375630-55375649 | None:intergenic | 40.0% | |
| CAAGTATTCAGGTGTGATTG+TGG | - | chr7.3:55375522-55375541 | MS.gene056110:intron | 40.0% | |
| CAGATTTCCTGTTGATATCC+AGG | - | chr7.3:55376742-55376761 | MS.gene056110:CDS | 40.0% | |
| CTATTTGGGCGATATATGGT+GGG | + | chr7.3:55376316-55376335 | None:intergenic | 40.0% | |
| GAAGGTCTATCTGGATTGTT+TGG | + | chr7.3:55374846-55374865 | None:intergenic | 40.0% | |
| GCCTCAATCAAAACAAGATC+CGG | + | chr7.3:55375410-55375429 | None:intergenic | 40.0% | |
| GGCTCACTGTCTATAAGTTA+AGG | - | chr7.3:55375968-55375987 | MS.gene056110:CDS | 40.0% | |
| TTACAGCAACTGCAATGGAT+AGG | - | chr7.3:55376642-55376661 | MS.gene056110:intron | 40.0% | |
| ! | AGATTGGACGAACTTTTCCA+AGG | - | chr7.3:55376674-55376693 | MS.gene056110:intron | 40.0% |
| ! | GATTGGACGAACTTTTCCAA+GGG | - | chr7.3:55376675-55376694 | MS.gene056110:intron | 40.0% |
| !! | CTTATCACACTTTTTGCTGC+AGG | - | chr7.3:55375595-55375614 | MS.gene056110:intron | 40.0% |
| !! | GTTCTGAGAGAGGTTCAATA+AGG | - | chr7.3:55375022-55375041 | MS.gene056110:intron | 40.0% |
| !! | TTTTGATTGAGGCGCTTTTC+CGG | - | chr7.3:55375417-55375436 | MS.gene056110:intron | 40.0% |
| !!! | CTGCTTTTTCAGTTTGGTGT+AGG | - | chr7.3:55376579-55376598 | MS.gene056110:intron | 40.0% |
| !!! | CTTTTTCAGTTTGGTGTAGG+AGG | - | chr7.3:55376582-55376601 | MS.gene056110:intron | 40.0% |
| AAAGCAGTCGAAGGTCTATC+TGG | + | chr7.3:55374855-55374874 | None:intergenic | 45.0% | |
| AACGAAGGAAAAACTGGCGA+GGG | + | chr7.3:55375704-55375723 | None:intergenic | 45.0% | |
| ACATATCAAATGGACGCCCT+TGG | + | chr7.3:55376694-55376713 | None:intergenic | 45.0% | |
| AGCAACTGCAATGGATAGGT+GGG | - | chr7.3:55376646-55376665 | MS.gene056110:intron | 45.0% | |
| CAAATAGCTCTTCGCCTTTC+GGG | - | chr7.3:55376329-55376348 | MS.gene056110:intron | 45.0% | |
| CCAAATAGCTCTTCGCCTTT+CGG | - | chr7.3:55376328-55376347 | MS.gene056110:intron | 45.0% | |
| CGAAAGGCGAAGAGCTATTT+GGG | + | chr7.3:55376330-55376349 | None:intergenic | 45.0% | |
| CGAACTTCACCACAACCAAT+TGG | + | chr7.3:55374951-55374970 | None:intergenic | 45.0% | |
| CTCTTCTAATGACTCCCGAA+AGG | + | chr7.3:55376346-55376365 | None:intergenic | 45.0% | |
| GCAAAGACGGTGGATAAGAA+TGG | - | chr7.3:55375178-55375197 | MS.gene056110:intron | 45.0% | |
| GCTATTTGGGCGATATATGG+TGG | + | chr7.3:55376317-55376336 | None:intergenic | 45.0% | |
| GGATAGGTGGGAATCAAGAT+TGG | - | chr7.3:55376658-55376677 | MS.gene056110:intron | 45.0% | |
| TAACGAAGGAAAAACTGGCG+AGG | + | chr7.3:55375705-55375724 | None:intergenic | 45.0% | |
| TCTACTTGAAAGGCAACGAG+TGG | - | chr7.3:55376826-55376845 | MS.gene056110:CDS | 45.0% | |
| TTCGCTTTCGTCTTCTGCAA+CGG | + | chr7.3:55374578-55374597 | None:intergenic | 45.0% | |
| TTGGGATCACAGTACAGCAT+AGG | - | chr7.3:55375741-55375760 | MS.gene056110:CDS | 45.0% | |
| ! | AAGTTAAGGCACCATCTGCA+TGG | - | chr7.3:55375982-55376001 | MS.gene056110:intron | 45.0% |
| ! | TTCGAGTAGGTTGGCAAAGA+CGG | - | chr7.3:55375165-55375184 | MS.gene056110:intron | 45.0% |
| !! | GATATATGGTGGGCGATACA+TGG | + | chr7.3:55376306-55376325 | None:intergenic | 45.0% |
| !! | TTCAGTTTGGTGTAGGAGGA+CGG | - | chr7.3:55376586-55376605 | MS.gene056110:intron | 45.0% |
| !! | TTTGGTCTGAGTTCTGAGAG+AGG | - | chr7.3:55375012-55375031 | MS.gene056110:intron | 45.0% |
| !!! | GCCGGATCTTGTTTTGATTG+AGG | - | chr7.3:55375406-55375425 | MS.gene056110:intron | 45.0% |
| ACGAAGGAAAAACTGGCGAG+GGG | + | chr7.3:55375703-55375722 | None:intergenic | 50.0% | |
| AGGACGGATGAACTTGTCGA+TGG | - | chr7.3:55376602-55376621 | MS.gene056110:intron | 50.0% | |
| ATGCCCTCTTTCCATGCAGA+TGG | + | chr7.3:55375996-55376015 | None:intergenic | 50.0% | |
| CAGCAACTGCAATGGATAGG+TGG | - | chr7.3:55376645-55376664 | MS.gene056110:intron | 50.0% | |
| CATTAAAGCCCCTGCCTTGA+AGG | + | chr7.3:55374788-55374807 | None:intergenic | 50.0% | |
| CCGAAAGGCGAAGAGCTATT+TGG | + | chr7.3:55376331-55376350 | None:intergenic | 50.0% | |
| GCACCATCTGCATGGAAAGA+GGG | - | chr7.3:55375990-55376009 | MS.gene056110:intron | 50.0% | |
| GCGCCTTCTCACAAGTATTC+AGG | - | chr7.3:55375511-55375530 | MS.gene056110:intron | 50.0% | |
| TGCAGACATTTATGCAGGCG+AGG | + | chr7.3:55375932-55375951 | None:intergenic | 50.0% | |
| ! | TGGTGGGCGATACATGGAAA+GGG | + | chr7.3:55376300-55376319 | None:intergenic | 50.0% |
| !! | ATGGTGGGCGATACATGGAA+AGG | + | chr7.3:55376301-55376320 | None:intergenic | 50.0% |
| GCAGGCGAGGAAATCAGACA+TGG | + | chr7.3:55375919-55375938 | None:intergenic | 55.0% | |
| GGCACCATCTGCATGGAAAG+AGG | - | chr7.3:55375989-55376008 | MS.gene056110:intron | 55.0% | |
| GGCGAGGGGATAAACAACTG+AGG | + | chr7.3:55375689-55375708 | None:intergenic | 55.0% | |
| TCGAGAGGAAGATACGGCAG+CGG | + | chr7.3:55374618-55374637 | None:intergenic | 55.0% | |
| ! | CAAGGCAGGGGCTTTAATGC+TGG | - | chr7.3:55374789-55374808 | MS.gene056110:CDS | 55.0% |
| ! | GAGTAGGTTGGCAAAGACGG+TGG | - | chr7.3:55375168-55375187 | MS.gene056110:intron | 55.0% |
| ! | TGAAAAGGCGCGTTGTGTGC+CGG | + | chr7.3:55375439-55375458 | None:intergenic | 55.0% |
| ! | TGAGAAGGCGCGTTGTGTGC+CGG | + | chr7.3:55375502-55375521 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 55374561 | 55376855 | 55374561 | ID=MS.gene056110 |
| chr7.3 | mRNA | 55374561 | 55376855 | 55374561 | ID=MS.gene056110.t1;Parent=MS.gene056110 |
| chr7.3 | exon | 55376727 | 55376855 | 55376727 | ID=MS.gene056110.t1.exon1;Parent=MS.gene056110.t1 |
| chr7.3 | CDS | 55376727 | 55376855 | 55376727 | ID=cds.MS.gene056110.t1;Parent=MS.gene056110.t1 |
| chr7.3 | exon | 55375884 | 55375988 | 55375884 | ID=MS.gene056110.t1.exon2;Parent=MS.gene056110.t1 |
| chr7.3 | CDS | 55375884 | 55375988 | 55375884 | ID=cds.MS.gene056110.t1;Parent=MS.gene056110.t1 |
| chr7.3 | exon | 55375654 | 55375799 | 55375654 | ID=MS.gene056110.t1.exon3;Parent=MS.gene056110.t1 |
| chr7.3 | CDS | 55375654 | 55375799 | 55375654 | ID=cds.MS.gene056110.t1;Parent=MS.gene056110.t1 |
| chr7.3 | exon | 55374653 | 55374815 | 55374653 | ID=MS.gene056110.t1.exon4;Parent=MS.gene056110.t1 |
| chr7.3 | CDS | 55374653 | 55374815 | 55374653 | ID=cds.MS.gene056110.t1;Parent=MS.gene056110.t1 |
| chr7.3 | exon | 55374561 | 55374578 | 55374561 | ID=MS.gene056110.t1.exon5;Parent=MS.gene056110.t1 |
| chr7.3 | CDS | 55374561 | 55374578 | 55374561 | ID=cds.MS.gene056110.t1;Parent=MS.gene056110.t1 |
| Gene Sequence |
| Protein sequence |
