Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74938.t1 | XP_024628022.1 | 94.8 | 310 | 16 | 0 | 1 | 310 | 1 | 310 | 2.40E-158 | 568.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74938.t1 | Q8AVQ6 | 38.9 | 239 | 138 | 5 | 73 | 308 | 7 | 240 | 1.1e-26 | 122.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74938.t1 | A0A072W2B2 | 93.5 | 310 | 17 | 1 | 1 | 310 | 1 | 307 | 9.9e-154 | 552.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049140 | MS.gene74938 | 0.815227 | 1.03E-51 | -1.69E-46 |
| MS.gene049756 | MS.gene74938 | 0.82469 | 7.04E-54 | -1.69E-46 |
| MS.gene049861 | MS.gene74938 | 0.811344 | 7.34E-51 | -1.69E-46 |
| MS.gene050114 | MS.gene74938 | 0.80787 | 4.09E-50 | -1.69E-46 |
| MS.gene050277 | MS.gene74938 | 0.803098 | 4.10E-49 | -1.69E-46 |
| MS.gene050288 | MS.gene74938 | 0.823089 | 1.67E-53 | -1.69E-46 |
| MS.gene050317 | MS.gene74938 | 0.838096 | 3.52E-57 | -1.69E-46 |
| MS.gene050320 | MS.gene74938 | 0.821998 | 3.00E-53 | -1.69E-46 |
| MS.gene051245 | MS.gene74938 | 0.809934 | 1.48E-50 | -1.69E-46 |
| MS.gene051676 | MS.gene74938 | 0.806761 | 7.03E-50 | -1.69E-46 |
| MS.gene051746 | MS.gene74938 | 0.803047 | 4.20E-49 | -1.69E-46 |
| MS.gene051748 | MS.gene74938 | 0.817941 | 2.54E-52 | -1.69E-46 |
| MS.gene051756 | MS.gene74938 | 0.814094 | 1.84E-51 | -1.69E-46 |
| MS.gene051903 | MS.gene74938 | 0.820535 | 6.52E-53 | -1.69E-46 |
| MS.gene051975 | MS.gene74938 | 0.807792 | 4.25E-50 | -1.69E-46 |
| MS.gene052286 | MS.gene74938 | 0.81665 | 4.96E-52 | -1.69E-46 |
| MS.gene052434 | MS.gene74938 | 0.814991 | 1.16E-51 | -1.69E-46 |
| MS.gene052818 | MS.gene74938 | -0.804995 | 1.65E-49 | -1.69E-46 |
| MS.gene053109 | MS.gene74938 | 0.83085 | 2.33E-55 | -1.69E-46 |
| MS.gene053216 | MS.gene74938 | 0.811579 | 6.52E-51 | -1.69E-46 |
| MS.gene053340 | MS.gene74938 | 0.803726 | 3.04E-49 | -1.69E-46 |
| MS.gene053381 | MS.gene74938 | 0.806099 | 9.70E-50 | -1.69E-46 |
| MS.gene05469 | MS.gene74938 | 0.857602 | 1.46E-62 | -1.69E-46 |
| MS.gene055311 | MS.gene74938 | 0.803089 | 4.12E-49 | -1.69E-46 |
| MS.gene055441 | MS.gene74938 | 0.809598 | 1.75E-50 | -1.69E-46 |
| MS.gene055603 | MS.gene74938 | 0.832407 | 9.62E-56 | -1.69E-46 |
| MS.gene056110 | MS.gene74938 | 0.803374 | 3.59E-49 | -1.69E-46 |
| MS.gene056787 | MS.gene74938 | 0.812498 | 4.11E-51 | -1.69E-46 |
| MS.gene056986 | MS.gene74938 | 0.837504 | 5.00E-57 | -1.69E-46 |
| MS.gene057079 | MS.gene74938 | 0.815813 | 7.63E-52 | -1.69E-46 |
| MS.gene057094 | MS.gene74938 | 0.81194 | 5.44E-51 | -1.69E-46 |
| MS.gene057234 | MS.gene74938 | 0.826514 | 2.60E-54 | -1.69E-46 |
| MS.gene057999 | MS.gene74938 | 0.843531 | 1.32E-58 | -1.69E-46 |
| MS.gene058074 | MS.gene74938 | 0.827803 | 1.28E-54 | -1.69E-46 |
| MS.gene058238 | MS.gene74938 | 0.857688 | 1.38E-62 | -1.69E-46 |
| MS.gene059360 | MS.gene74938 | 0.810886 | 9.22E-51 | -1.69E-46 |
| MS.gene059830 | MS.gene74938 | 0.810478 | 1.13E-50 | -1.69E-46 |
| MS.gene059872 | MS.gene74938 | -0.825734 | 3.99E-54 | -1.69E-46 |
| MS.gene06010 | MS.gene74938 | 0.80299 | 4.31E-49 | -1.69E-46 |
| MS.gene06011 | MS.gene74938 | 0.828239 | 1.00E-54 | -1.69E-46 |
| MS.gene060297 | MS.gene74938 | 0.831952 | 1.25E-55 | -1.69E-46 |
| MS.gene060586 | MS.gene74938 | 0.829324 | 5.49E-55 | -1.69E-46 |
| MS.gene060702 | MS.gene74938 | 0.806064 | 9.86E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74938.t1 | MTR_1g112640 | 98.387 | 310 | 3 | 1 | 1 | 310 | 1 | 308 | 0.0 | 627 |
| MS.gene74938.t1 | MTR_1g112640 | 98.387 | 310 | 2 | 1 | 1 | 310 | 1 | 307 | 0.0 | 626 |
| MS.gene74938.t1 | MTR_1g112640 | 99.595 | 247 | 1 | 0 | 64 | 310 | 1 | 247 | 0.0 | 502 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74938.t1 | AT2G16860 | 66.774 | 310 | 91 | 3 | 1 | 310 | 1 | 298 | 2.37e-144 | 409 |
| MS.gene74938.t1 | AT2G16860 | 66.774 | 310 | 91 | 3 | 1 | 310 | 1 | 298 | 2.37e-144 | 409 |
Find 74 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGTCTGGCAGAGAGTTT+GGG | 0.193796 | 1.3:+76404813 | None:intergenic |
| TTTCTGTCTGGCAGAGAGTT+TGG | 0.214726 | 1.3:+76404812 | None:intergenic |
| CTAACCAGATTGAGTGAGTT+TGG | 0.276157 | 1.3:+76405270 | None:intergenic |
| TACATCGACCTCAATGTTCT+TGG | 0.295867 | 1.3:+76402887 | None:intergenic |
| GAAGCATCACGGTAGAATTC+TGG | 0.315653 | 1.3:+76402834 | None:intergenic |
| TTCTCTGAAGCAGGCTGATC+AGG | 0.317184 | 1.3:+76404855 | None:intergenic |
| CAGAAGAGAAATACAAGAAA+TGG | 0.332825 | 1.3:-76404488 | MS.gene74938:CDS |
| GATGGAGTTGAGAGCTAAAA+TGG | 0.334885 | 1.3:-76404784 | MS.gene74938:intron |
| GACAGTATACCTTTCCATAC+TGG | 0.367957 | 1.3:+76402805 | None:intergenic |
| CGAGCGAGGAACTGCATTGC+CGG | 0.368519 | 1.3:-76402507 | MS.gene74938:CDS |
| GGAAAACTTCTTGATGCAAA+TGG | 0.374108 | 1.3:-76404555 | MS.gene74938:CDS |
| TCATCAGGAGACAACTCATC+TGG | 0.396965 | 1.3:+76404927 | None:intergenic |
| ATTACTGGCGTTCCGGCAAT+CGG | 0.404996 | 1.3:+76405339 | None:intergenic |
| AAGAAGATTGAACGGGCCTT+TGG | 0.407954 | 1.3:-76402560 | MS.gene74938:CDS |
| TCTTGTTGAAATGCTCATTA+CGG | 0.414024 | 1.3:+76402579 | None:intergenic |
| GAAAAGGATTACTGGCGTTC+CGG | 0.418188 | 1.3:+76405332 | None:intergenic |
| AGGATCCTGCTCCATTCGGC+TGG | 0.431794 | 1.3:-76404461 | MS.gene74938:CDS |
| GAGATGTGCATCCCGATTGC+CGG | 0.431903 | 1.3:-76405351 | MS.gene74938:CDS |
| TCCTCATTGTTCTCTGAAGC+AGG | 0.433768 | 1.3:+76404846 | None:intergenic |
| CAAGCCAAACTCACTCAATC+TGG | 0.442251 | 1.3:-76405274 | MS.gene74938:intron |
| CAGGATGGTACAAGAACTTA+AGG | 0.443877 | 1.3:-76402678 | MS.gene74938:CDS |
| AAAACGTAATCAAATTGAAA+TGG | 0.446058 | 1.3:-76404664 | MS.gene74938:CDS |
| GATGCTTCAAGTCTCCAGTA+TGG | 0.454556 | 1.3:-76402819 | MS.gene74938:CDS |
| TCATCATGCATCCCCTCATC+AGG | 0.456108 | 1.3:+76404912 | None:intergenic |
| ACATTCGTGAAAAGGATTAC+TGG | 0.473926 | 1.3:+76405324 | None:intergenic |
| TAATCAGTACATTCGTGAAA+AGG | 0.476136 | 1.3:+76405316 | None:intergenic |
| AGAAGAGAAATACAAGAAAT+GGG | 0.476799 | 1.3:-76404487 | MS.gene74938:CDS |
| GGAGGCTCCAACAGAGTCTA+GGG | 0.490980 | 1.3:-76404622 | MS.gene74938:CDS |
| TGGAGGCTCCAACAGAGTCT+AGG | 0.495220 | 1.3:-76404623 | MS.gene74938:CDS |
| CCATCCCAGCCGAATGGAGC+AGG | 0.495866 | 1.3:+76404456 | None:intergenic |
| TTTCAACAAGAAGATTGAAC+GGG | 0.513427 | 1.3:-76402567 | MS.gene74938:CDS |
| CCTGCTCCATTCGGCTGGGA+TGG | 0.514280 | 1.3:-76404456 | MS.gene74938:intron |
| CCTCAGAGGATAAGATTGAC+AGG | 0.514772 | 1.3:-76402697 | MS.gene74938:CDS |
| ACTTCTTGATGCAAATGGAC+TGG | 0.525736 | 1.3:-76404550 | MS.gene74938:CDS |
| GGCAATCGGGATGCACATCT+CGG | 0.536567 | 1.3:+76405353 | None:intergenic |
| TTACTGGCGTTCCGGCAATC+GGG | 0.540658 | 1.3:+76405340 | None:intergenic |
| TGGTACAAGAACTTAAGGAT+AGG | 0.540824 | 1.3:-76402673 | MS.gene74938:CDS |
| GATGAGGGGATGCATGATGA+TGG | 0.547228 | 1.3:-76404909 | MS.gene74938:CDS |
| GAGAAGGATCCTGCTCCATT+CGG | 0.549251 | 1.3:-76404465 | MS.gene74938:CDS |
| GAAACACCCCTAGACTCTGT+TGG | 0.552933 | 1.3:+76404615 | None:intergenic |
| CATCTGGGATGGCTTGCTCA+TGG | 0.554106 | 1.3:+76404943 | None:intergenic |
| GATGAGTTGTCTCCTGATGA+GGG | 0.554331 | 1.3:-76404924 | MS.gene74938:CDS |
| GAAATACAAGAAATGGGAGA+AGG | 0.559598 | 1.3:-76404481 | MS.gene74938:CDS |
| GGCTAATGAAAAGAAGAGGA+TGG | 0.564931 | 1.3:-76404643 | MS.gene74938:CDS |
| AGAAACGTAGGGCATTTAGC+AGG | 0.569318 | 1.3:-76402646 | MS.gene74938:CDS |
| AGATGAGTTGTCTCCTGATG+AGG | 0.572851 | 1.3:-76404925 | MS.gene74938:CDS |
| GGTACAAGAACTTAAGGATA+GGG | 0.574451 | 1.3:-76402672 | MS.gene74938:CDS |
| CCTGTCAATCTTATCCTCTG+AGG | 0.574499 | 1.3:+76402697 | None:intergenic |
| CATCAGGAGACAACTCATCT+GGG | 0.581072 | 1.3:+76404928 | None:intergenic |
| AACATACCATCCCAGCCGAA+TGG | 0.583714 | 1.3:+76404450 | None:intergenic |
| GGATCCTGCTCCATTCGGCT+GGG | 0.585839 | 1.3:-76404460 | MS.gene74938:CDS |
| CTCCAATGTGTATTTACCAA+AGG | 0.590665 | 1.3:+76402544 | None:intergenic |
| AGAGGATAAGATTGACAGGA+TGG | 0.594250 | 1.3:-76402693 | MS.gene74938:CDS |
| ACTGCAGAAGCAAATCAGTC+CGG | 0.596042 | 1.3:+76402488 | None:intergenic |
| AGGATAGGGACGAGAAACGT+AGG | 0.596930 | 1.3:-76402658 | MS.gene74938:CDS |
| ATTTCAACAAGAAGATTGAA+CGG | 0.602140 | 1.3:-76402568 | MS.gene74938:CDS |
| AGGAGACAACTCATCTGGGA+TGG | 0.602375 | 1.3:+76404932 | None:intergenic |
| GGCCTTTGGTAAATACACAT+TGG | 0.602906 | 1.3:-76402546 | MS.gene74938:CDS |
| AGCAGAAGTGGCTTGACGAT+AGG | 0.605628 | 1.3:-76404590 | MS.gene74938:CDS |
| AAATGGCTAATGAAAAGAAG+AGG | 0.612031 | 1.3:-76404647 | MS.gene74938:CDS |
| GCTTCAGAGAACAATGAGGA+TGG | 0.614111 | 1.3:-76404843 | MS.gene74938:CDS |
| TCTGTCTGGCAGAGAGTTTG+GGG | 0.622516 | 1.3:+76404814 | None:intergenic |
| TCAGAAGTTGCACAAGCTAG+CGG | 0.624203 | 1.3:-76404975 | MS.gene74938:CDS |
| TTCAAGTCTCCAGTATGGAA+AGG | 0.627917 | 1.3:-76402814 | MS.gene74938:intron |
| GGATAGGGACGAGAAACGTA+GGG | 0.635157 | 1.3:-76402657 | MS.gene74938:CDS |
| GGGGTGTTTCGAAGCAGAAG+TGG | 0.643438 | 1.3:-76404602 | MS.gene74938:CDS |
| ACTGGAGACTTGAAGCATCA+CGG | 0.643816 | 1.3:+76402823 | None:intergenic |
| ATATATGCTTGACACACAAG+AGG | 0.658090 | 1.3:-76404514 | MS.gene74938:CDS |
| AAAGCGAACCAAGAACATTG+AGG | 0.660498 | 1.3:-76402895 | MS.gene74938:CDS |
| AAATGGACTGGATATGACAA+AGG | 0.684378 | 1.3:-76404538 | MS.gene74938:CDS |
| TAATGAAAAGAAGAGGATGG+AGG | 0.705005 | 1.3:-76404640 | MS.gene74938:CDS |
| ATGAGTTGTCTCCTGATGAG+GGG | 0.712862 | 1.3:-76404923 | MS.gene74938:CDS |
| GAGGCTCCAACAGAGTCTAG+GGG | 0.720122 | 1.3:-76404621 | MS.gene74938:CDS |
| GCCTGCTTCAGAGAACAATG+AGG | 0.734012 | 1.3:-76404847 | MS.gene74938:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTAATTTATTATTTAT+TGG | - | chr1.3:76403133-76403152 | MS.gene74938:intron | 0.0% |
| !! | AAAAAATTAAAATAAGATAG+AGG | + | chr1.3:76404510-76404529 | None:intergenic | 10.0% |
| !! | ATAATTCTATAAATAATCAT+GGG | + | chr1.3:76404249-76404268 | None:intergenic | 10.0% |
| !! | CAATATATTAGAAAAAATTA+TGG | - | chr1.3:76402641-76402660 | MS.gene74938:CDS | 10.0% |
| !!! | TATCTATTTTAAGATAAATT+GGG | + | chr1.3:76403770-76403789 | None:intergenic | 10.0% |
| !!! | TTAAATATATGTTTTTTTGT+TGG | - | chr1.3:76404435-76404454 | MS.gene74938:intron | 10.0% |
| !! | GATAATTCTATAAATAATCA+TGG | + | chr1.3:76404250-76404269 | None:intergenic | 15.0% |
| !! | TAATTCTATAAATAATCATG+GGG | + | chr1.3:76404248-76404267 | None:intergenic | 15.0% |
| !!! | AATCATTTACTAACTTTTTA+CGG | - | chr1.3:76404542-76404561 | MS.gene74938:CDS | 15.0% |
| !!! | ATCTATTTTAAGATAAATTG+GGG | + | chr1.3:76403769-76403788 | None:intergenic | 15.0% |
| !!! | ATCTTTGGTTAATAAATTTT+AGG | + | chr1.3:76404674-76404693 | None:intergenic | 15.0% |
| !!! | CTATCTATTTTAAGATAAAT+TGG | + | chr1.3:76403771-76403790 | None:intergenic | 15.0% |
| !!! | TCTTTGGTTAATAAATTTTA+GGG | + | chr1.3:76404673-76404692 | None:intergenic | 15.0% |
| !!! | TTTTTCTAATATATTGTATG+TGG | + | chr1.3:76402637-76402656 | None:intergenic | 15.0% |
| !! | AAAACGTAATCAAATTGAAA+TGG | - | chr1.3:76403202-76403221 | MS.gene74938:intron | 20.0% |
| !! | AGTGTCATATTCAAATTTAA+GGG | - | chr1.3:76403666-76403685 | MS.gene74938:intron | 20.0% |
| !! | ATATATTAACATAAACCTCA+GGG | - | chr1.3:76404630-76404649 | MS.gene74938:CDS | 20.0% |
| !! | GCAATAAAAATAACATTTCT+TGG | + | chr1.3:76403456-76403475 | None:intergenic | 20.0% |
| !! | TAATTTACTCCAATAATTTG+TGG | - | chr1.3:76404191-76404210 | MS.gene74938:intron | 20.0% |
| !! | TAGTGTCATATTCAAATTTA+AGG | - | chr1.3:76403665-76403684 | MS.gene74938:intron | 20.0% |
| !!! | AAAAATGCTTTTAGCTTTAA+CGG | + | chr1.3:76403827-76403846 | None:intergenic | 20.0% |
| !!! | AATTTACTCCAATAATTTGT+GGG | - | chr1.3:76404192-76404211 | MS.gene74938:intron | 20.0% |
| !!! | AGAAATGTTATTTTTATTGC+TGG | - | chr1.3:76403456-76403475 | MS.gene74938:intron | 20.0% |
| !!! | ATTGCATTTTTTTTATCTCT+CGG | + | chr1.3:76404344-76404363 | None:intergenic | 20.0% |
| !!! | GAACAAATTGATTTATTCTT+GGG | + | chr1.3:76404322-76404341 | None:intergenic | 20.0% |
| !!! | TCTATTTTAAGATAAATTGG+GGG | + | chr1.3:76403768-76403787 | None:intergenic | 20.0% |
| ! | AAAAATGTCCCACAAATTAT+TGG | + | chr1.3:76404203-76404222 | None:intergenic | 25.0% |
| ! | AATTGTCTTTCCTTCATTAT+AGG | - | chr1.3:76405137-76405156 | MS.gene74938:intron | 25.0% |
| ! | AGAAGAGAAATACAAGAAAT+GGG | - | chr1.3:76403379-76403398 | MS.gene74938:intron | 25.0% |
| ! | ATGAACTTGAAACAAAAACA+AGG | - | chr1.3:76404129-76404148 | MS.gene74938:intron | 25.0% |
| ! | ATTTCAACAAGAAGATTGAA+CGG | - | chr1.3:76405298-76405317 | MS.gene74938:CDS | 25.0% |
| ! | GAATAACACCATGAAATATT+CGG | - | chr1.3:76404792-76404811 | MS.gene74938:CDS | 25.0% |
| ! | GATATATTAACATAAACCTC+AGG | - | chr1.3:76404629-76404648 | MS.gene74938:CDS | 25.0% |
| ! | GATTACAATGTCTTATACTT+AGG | - | chr1.3:76404691-76404710 | MS.gene74938:intron | 25.0% |
| ! | GTATAAGACATTGTAATCTT+TGG | + | chr1.3:76404689-76404708 | None:intergenic | 25.0% |
| ! | TATATTAACATAAACCTCAG+GGG | - | chr1.3:76404631-76404650 | MS.gene74938:CDS | 25.0% |
| ! | TGAACTTGAAACAAAAACAA+GGG | - | chr1.3:76404130-76404149 | MS.gene74938:intron | 25.0% |
| ! | TTGTTAAGTGAACAAATAGA+GGG | - | chr1.3:76404599-76404618 | MS.gene74938:CDS | 25.0% |
| !! | GGAACAAATTGATTTATTCT+TGG | + | chr1.3:76404323-76404342 | None:intergenic | 25.0% |
| !! | TGTTGAGTTTAAAACTAGAA+GGG | + | chr1.3:76403738-76403757 | None:intergenic | 25.0% |
| !! | TTTGTAGAGTTGATTGAAAA+TGG | - | chr1.3:76404056-76404075 | MS.gene74938:intron | 25.0% |
| !! | TTTTACCAGTTTTCAATCAA+AGG | - | chr1.3:76404928-76404947 | MS.gene74938:CDS | 25.0% |
| !!! | GTTTTCTAGAAATTGATTGA+GGG | + | chr1.3:76404095-76404114 | None:intergenic | 25.0% |
| !!! | TGTTTTCTAGAAATTGATTG+AGG | + | chr1.3:76404096-76404115 | None:intergenic | 25.0% |
| !!! | TTACCAGTATGTGTTTTTAT+TGG | + | chr1.3:76404298-76404317 | None:intergenic | 25.0% |
| AAATGGCTAATGAAAAGAAG+AGG | - | chr1.3:76403219-76403238 | MS.gene74938:intron | 30.0% | |
| AATGTCCTTTGATTGAAAAC+TGG | + | chr1.3:76404936-76404955 | None:intergenic | 30.0% | |
| ACAATGTCTTATACTTAGGT+GGG | - | chr1.3:76404695-76404714 | MS.gene74938:intron | 30.0% | |
| AGTGAAGATGCAAATTGATT+TGG | + | chr1.3:76403931-76403950 | None:intergenic | 30.0% | |
| ATGAATGGTAGAAAGAAACA+TGG | - | chr1.3:76402742-76402761 | MS.gene74938:intron | 30.0% | |
| ATTAAAAATAATCTCGAGCG+AGG | - | chr1.3:76405345-76405364 | MS.gene74938:CDS | 30.0% | |
| ATTATTAGCCCAACAAATCA+TGG | + | chr1.3:76404415-76404434 | None:intergenic | 30.0% | |
| CAAAGTTTCTCAAAATTGGA+TGG | + | chr1.3:76404272-76404291 | None:intergenic | 30.0% | |
| CAGAAGAGAAATACAAGAAA+TGG | - | chr1.3:76403378-76403397 | MS.gene74938:intron | 30.0% | |
| CATCAATGGTTTATTGTATG+AGG | - | chr1.3:76405114-76405133 | MS.gene74938:intron | 30.0% | |
| GAAATATAAATTGTGATCCC+TGG | - | chr1.3:76404364-76404383 | MS.gene74938:intron | 30.0% | |
| GATCCAAAGTTTCTCAAAAT+TGG | + | chr1.3:76404276-76404295 | None:intergenic | 30.0% | |
| GATCCAATAAAAACACATAC+TGG | - | chr1.3:76404292-76404311 | MS.gene74938:intron | 30.0% | |
| GTTGTTAAGTGAACAAATAG+AGG | - | chr1.3:76404598-76404617 | MS.gene74938:CDS | 30.0% | |
| TAAAACACAAATTGTCGTCA+TGG | + | chr1.3:76403855-76403874 | None:intergenic | 30.0% | |
| TAATCAGTACATTCGTGAAA+AGG | + | chr1.3:76402553-76402572 | None:intergenic | 30.0% | |
| TACAATGTCTTATACTTAGG+TGG | - | chr1.3:76404694-76404713 | MS.gene74938:intron | 30.0% | |
| TCTTGTTGAAATGCTCATTA+CGG | + | chr1.3:76405290-76405309 | None:intergenic | 30.0% | |
| TGTTAAGTGAACAAATAGAG+GGG | - | chr1.3:76404600-76404619 | MS.gene74938:CDS | 30.0% | |
| TTATGGCAACTAAACTTAAG+TGG | - | chr1.3:76402658-76402677 | MS.gene74938:CDS | 30.0% | |
| TTGATCCACTTATTGTGATA+AGG | - | chr1.3:76402791-76402810 | MS.gene74938:intron | 30.0% | |
| TTGTATATCTCTGTGTATAC+AGG | + | chr1.3:76403506-76403525 | None:intergenic | 30.0% | |
| TTTCAACAAGAAGATTGAAC+GGG | - | chr1.3:76405299-76405318 | MS.gene74938:CDS | 30.0% | |
| ! | GTGAAGATGCAAATTGATTT+GGG | + | chr1.3:76403930-76403949 | None:intergenic | 30.0% |
| ! | GTGTTGAGTTTAAAACTAGA+AGG | + | chr1.3:76403739-76403758 | None:intergenic | 30.0% |
| ! | GTTGAGTTTAAAACTAGAAG+GGG | + | chr1.3:76403737-76403756 | None:intergenic | 30.0% |
| !! | CATCCAATTTTGAGAAACTT+TGG | - | chr1.3:76404270-76404289 | MS.gene74938:intron | 30.0% |
| !! | GTTGATGAAGAAGTGTTTAT+AGG | - | chr1.3:76404767-76404786 | MS.gene74938:intron | 30.0% |
| !! | TGTCATTTAAAAGTACCTCA+GGG | + | chr1.3:76403708-76403727 | None:intergenic | 30.0% |
| !!! | ATTTTAAGATAAATTGGGGG+AGG | + | chr1.3:76403765-76403784 | None:intergenic | 30.0% |
| !!! | CAATTTGTGTTTTAGAGTGT+CGG | - | chr1.3:76403861-76403880 | MS.gene74938:intron | 30.0% |
| ACATTCGTGAAAAGGATTAC+TGG | + | chr1.3:76402545-76402564 | None:intergenic | 35.0% | |
| ACTTGTAGAGTTTGTAAGCT+TGG | - | chr1.3:76403594-76403613 | MS.gene74938:intron | 35.0% | |
| AGTTCCGTAAGAACTTCTAA+AGG | + | chr1.3:76404888-76404907 | None:intergenic | 35.0% | |
| ATATATGCTTGACACACAAG+AGG | - | chr1.3:76403352-76403371 | MS.gene74938:intron | 35.0% | |
| CACTTATTGTGATAAGGCTT+TGG | - | chr1.3:76402797-76402816 | MS.gene74938:intron | 35.0% | |
| CATGTGTTTGCATGAATACT+TGG | - | chr1.3:76404725-76404744 | MS.gene74938:intron | 35.0% | |
| CTCCAATGTGTATTTACCAA+AGG | + | chr1.3:76405325-76405344 | None:intergenic | 35.0% | |
| GAAATACAAGAAATGGGAGA+AGG | - | chr1.3:76403385-76403404 | MS.gene74938:intron | 35.0% | |
| GACGATAGGAAGAAAAAGAT+TGG | - | chr1.3:76403290-76403309 | MS.gene74938:intron | 35.0% | |
| GATCTAGACCGAATATTTCA+TGG | + | chr1.3:76404803-76404822 | None:intergenic | 35.0% | |
| GCAACTAAACTTAAGTGGTT+TGG | - | chr1.3:76402663-76402682 | MS.gene74938:CDS | 35.0% | |
| GCTAAAATGGTATTCAACGA+TGG | - | chr1.3:76403095-76403114 | MS.gene74938:intron | 35.0% | |
| GGAAAACTTCTTGATGCAAA+TGG | - | chr1.3:76403311-76403330 | MS.gene74938:intron | 35.0% | |
| GGGTTTACAGTTTATCAGTA+AGG | - | chr1.3:76404150-76404169 | MS.gene74938:intron | 35.0% | |
| GGTACAAGAACTTAAGGATA+GGG | - | chr1.3:76405194-76405213 | MS.gene74938:intron | 35.0% | |
| GTAATAGTAGATGCGATGAA+TGG | - | chr1.3:76402727-76402746 | MS.gene74938:intron | 35.0% | |
| GTATTCATGCAAACACATGT+AGG | + | chr1.3:76404724-76404743 | None:intergenic | 35.0% | |
| TAATGAAAAGAAGAGGATGG+AGG | - | chr1.3:76403226-76403245 | MS.gene74938:intron | 35.0% | |
| TAGATGTGAGTTTAACAGCA+AGG | - | chr1.3:76404569-76404588 | MS.gene74938:CDS | 35.0% | |
| TGGTACAAGAACTTAAGGAT+AGG | - | chr1.3:76405193-76405212 | MS.gene74938:intron | 35.0% | |
| TTTGTACTTCTGCACATCAA+TGG | - | chr1.3:76405100-76405119 | MS.gene74938:intron | 35.0% | |
| TTTGTGAACCACATTGAAGT+TGG | + | chr1.3:76403554-76403573 | None:intergenic | 35.0% | |
| ! | AATCACGGTGTTAAGTTGTA+AGG | + | chr1.3:76403801-76403820 | None:intergenic | 35.0% |
| ! | ATCACGGTGTTAAGTTGTAA+GGG | + | chr1.3:76403800-76403819 | None:intergenic | 35.0% |
| ! | CAAAGCCTTATCACAATAAG+TGG | + | chr1.3:76402799-76402818 | None:intergenic | 35.0% |
| ! | TCACTGTCTGAATTTTCATC+AGG | + | chr1.3:76402990-76403009 | None:intergenic | 35.0% |
| ! | TCTGAATTTTCATCAGGCTT+TGG | + | chr1.3:76402984-76403003 | None:intergenic | 35.0% |
| ! | TGTGCCTTTAGAAGTTCTTA+CGG | - | chr1.3:76404881-76404900 | MS.gene74938:CDS | 35.0% |
| !! | AAATGGACTGGATATGACAA+AGG | - | chr1.3:76403328-76403347 | MS.gene74938:intron | 35.0% |
| !! | GTGTCATTTAAAAGTACCTC+AGG | + | chr1.3:76403709-76403728 | None:intergenic | 35.0% |
| !! | TAGCTTTAACGGAACAATCA+CGG | + | chr1.3:76403816-76403835 | None:intergenic | 35.0% |
| !!! | ATCTTATCCTCTGAGGTTTT+TGG | + | chr1.3:76405165-76405184 | None:intergenic | 35.0% |
| !!! | GTTTTTGGTGCCTATAATGA+AGG | + | chr1.3:76405150-76405169 | None:intergenic | 35.0% |
| AAAAGAAGAGCCACCAGAAA+AGG | + | chr1.3:76403983-76404002 | None:intergenic | 40.0% | |
| AAAGAAGAGCCACCAGAAAA+GGG | + | chr1.3:76403982-76404001 | None:intergenic | 40.0% | |
| AAAGCGAACCAAGAACATTG+AGG | - | chr1.3:76404971-76404990 | MS.gene74938:CDS | 40.0% | |
| ACTTCTTGATGCAAATGGAC+TGG | - | chr1.3:76403316-76403335 | MS.gene74938:intron | 40.0% | |
| AGAGGATAAGATTGACAGGA+TGG | - | chr1.3:76405173-76405192 | MS.gene74938:intron | 40.0% | |
| ATTAACATAAACCTCAGGGG+AGG | - | chr1.3:76404634-76404653 | MS.gene74938:CDS | 40.0% | |
| CAGGATGGTACAAGAACTTA+AGG | - | chr1.3:76405188-76405207 | MS.gene74938:intron | 40.0% | |
| CTAACCAGATTGAGTGAGTT+TGG | + | chr1.3:76402599-76402618 | None:intergenic | 40.0% | |
| GACAGTATACCTTTCCATAC+TGG | + | chr1.3:76405064-76405083 | None:intergenic | 40.0% | |
| GATGGAGTTGAGAGCTAAAA+TGG | - | chr1.3:76403082-76403101 | MS.gene74938:intron | 40.0% | |
| GGCCTTTGGTAAATACACAT+TGG | - | chr1.3:76405320-76405339 | MS.gene74938:CDS | 40.0% | |
| GGCTAATGAAAAGAAGAGGA+TGG | - | chr1.3:76403223-76403242 | MS.gene74938:intron | 40.0% | |
| GTACTCGATATCACAAACTC+TGG | + | chr1.3:76403627-76403646 | None:intergenic | 40.0% | |
| TAAGTGAACAAATAGAGGGG+AGG | - | chr1.3:76404603-76404622 | MS.gene74938:CDS | 40.0% | |
| TACATCGACCTCAATGTTCT+TGG | + | chr1.3:76404982-76405001 | None:intergenic | 40.0% | |
| TTCAAGTCTCCAGTATGGAA+AGG | - | chr1.3:76405052-76405071 | MS.gene74938:intron | 40.0% | |
| TTTCTGTGCCAACTTCAATG+TGG | - | chr1.3:76403543-76403562 | MS.gene74938:intron | 40.0% | |
| ! | TCACGGTGTTAAGTTGTAAG+GGG | + | chr1.3:76403799-76403818 | None:intergenic | 40.0% |
| !! | AATTACACTGACTTTCCCTG+AGG | - | chr1.3:76403690-76403709 | MS.gene74938:intron | 40.0% |
| !!! | AGATCCTTGCTTTGTTTTGC+TGG | - | chr1.3:76403165-76403184 | MS.gene74938:intron | 40.0% |
| AAATCATGGACGCATGGAAG+AGG | + | chr1.3:76404401-76404420 | None:intergenic | 45.0% | |
| AAGAAGAGCCACCAGAAAAG+GGG | + | chr1.3:76403981-76404000 | None:intergenic | 45.0% | |
| AAGAAGATTGAACGGGCCTT+TGG | - | chr1.3:76405306-76405325 | MS.gene74938:CDS | 45.0% | |
| AGATGAGTTGTCTCCTGATG+AGG | - | chr1.3:76402941-76402960 | MS.gene74938:intron | 45.0% | |
| ATAGGCACCAAAAACCTCAG+AGG | - | chr1.3:76405155-76405174 | MS.gene74938:intron | 45.0% | |
| ATGAGTTGTCTCCTGATGAG+GGG | - | chr1.3:76402943-76402962 | MS.gene74938:intron | 45.0% | |
| ATTTACACTAACCTCCCCTG+AGG | + | chr1.3:76404648-76404667 | None:intergenic | 45.0% | |
| CAAGCCAAACTCACTCAATC+TGG | - | chr1.3:76402592-76402611 | MS.gene74938:CDS | 45.0% | |
| CATCAGGAGACAACTCATCT+GGG | + | chr1.3:76402941-76402960 | None:intergenic | 45.0% | |
| CCTCAGAGGATAAGATTGAC+AGG | - | chr1.3:76405169-76405188 | MS.gene74938:intron | 45.0% | |
| CCTGTCAATCTTATCCTCTG+AGG | + | chr1.3:76405172-76405191 | None:intergenic | 45.0% | |
| GAAAAGGATTACTGGCGTTC+CGG | + | chr1.3:76402537-76402556 | None:intergenic | 45.0% | |
| GATGAGTTGTCTCCTGATGA+GGG | - | chr1.3:76402942-76402961 | MS.gene74938:intron | 45.0% | |
| GATGCTTCAAGTCTCCAGTA+TGG | - | chr1.3:76405047-76405066 | MS.gene74938:intron | 45.0% | |
| GCTTCAGAGAACAATGAGGA+TGG | - | chr1.3:76403023-76403042 | MS.gene74938:intron | 45.0% | |
| TCAGAAGTTGCACAAGCTAG+CGG | - | chr1.3:76402891-76402910 | MS.gene74938:CDS | 45.0% | |
| TCATCAGGAGACAACTCATC+TGG | + | chr1.3:76402942-76402961 | None:intergenic | 45.0% | |
| TCTCTGCCAGACAGAAAAAG+TGG | - | chr1.3:76403060-76403079 | MS.gene74938:intron | 45.0% | |
| TGCCAGACAGAAAAAGTGGA+TGG | - | chr1.3:76403064-76403083 | MS.gene74938:intron | 45.0% | |
| TTCTGTCTGGCAGAGAGTTT+GGG | + | chr1.3:76403056-76403075 | None:intergenic | 45.0% | |
| TTTCTGTCTGGCAGAGAGTT+TGG | + | chr1.3:76403057-76403076 | None:intergenic | 45.0% | |
| ! | ACTGGAGACTTGAAGCATCA+CGG | + | chr1.3:76405046-76405065 | None:intergenic | 45.0% |
| ! | AGAAACGTAGGGCATTTAGC+AGG | - | chr1.3:76405220-76405239 | MS.gene74938:intron | 45.0% |
| ! | GAAGCATCACGGTAGAATTC+TGG | + | chr1.3:76405035-76405054 | None:intergenic | 45.0% |
| ! | TCCATGCGTCCATGATTTGT+TGG | - | chr1.3:76404403-76404422 | MS.gene74938:intron | 45.0% |
| !! | CCATGCGTCCATGATTTGTT+GGG | - | chr1.3:76404404-76404423 | MS.gene74938:intron | 45.0% |
| !! | TCCTCATTGTTCTCTGAAGC+AGG | + | chr1.3:76403023-76403042 | None:intergenic | 45.0% |
| !! | TTAGAGTGTCGGTGTGGATT+TGG | - | chr1.3:76403872-76403891 | MS.gene74938:intron | 45.0% |
| !!! | CTCCATCCACTTTTTCTGTC+TGG | + | chr1.3:76403069-76403088 | None:intergenic | 45.0% |
| !!! | TGTGTTTTAGAGTGTCGGTG+TGG | - | chr1.3:76403866-76403885 | MS.gene74938:intron | 45.0% |
| AACATACCATCCCAGCCGAA+TGG | + | chr1.3:76403419-76403438 | None:intergenic | 50.0% | |
| AAGAGGCCACAACAAGTCCA+GGG | + | chr1.3:76404384-76404403 | None:intergenic | 50.0% | |
| AGCAGAAGTGGCTTGACGAT+AGG | - | chr1.3:76403276-76403295 | MS.gene74938:intron | 50.0% | |
| AGGAGACAACTCATCTGGGA+TGG | + | chr1.3:76402937-76402956 | None:intergenic | 50.0% | |
| AGGATAGGGACGAGAAACGT+AGG | - | chr1.3:76405208-76405227 | MS.gene74938:intron | 50.0% | |
| ATTACTGGCGTTCCGGCAAT+CGG | + | chr1.3:76402530-76402549 | None:intergenic | 50.0% | |
| CCCAACAAATCATGGACGCA+TGG | + | chr1.3:76404407-76404426 | None:intergenic | 50.0% | |
| GAAACACCCCTAGACTCTGT+TGG | + | chr1.3:76403254-76403273 | None:intergenic | 50.0% | |
| GAGAAGGATCCTGCTCCATT+CGG | - | chr1.3:76403401-76403420 | MS.gene74938:intron | 50.0% | |
| GATGAGGGGATGCATGATGA+TGG | - | chr1.3:76402957-76402976 | MS.gene74938:intron | 50.0% | |
| GCCTGCTTCAGAGAACAATG+AGG | - | chr1.3:76403019-76403038 | MS.gene74938:intron | 50.0% | |
| GCTGCCAGCAAAACAAAGCA+AGG | + | chr1.3:76403172-76403191 | None:intergenic | 50.0% | |
| GGATAGGGACGAGAAACGTA+GGG | - | chr1.3:76405209-76405228 | MS.gene74938:intron | 50.0% | |
| TCACTCTCCCACTCTATCTC+TGG | - | chr1.3:76403946-76403965 | MS.gene74938:intron | 50.0% | |
| TCATCATGCATCCCCTCATC+AGG | + | chr1.3:76402957-76402976 | None:intergenic | 50.0% | |
| TCTGTCTGGCAGAGAGTTTG+GGG | + | chr1.3:76403055-76403074 | None:intergenic | 50.0% | |
| !! | TGTGATCCCTGGACTTGTTG+TGG | - | chr1.3:76404375-76404394 | MS.gene74938:intron | 50.0% |
| !! | TTCTCTGAAGCAGGCTGATC+AGG | + | chr1.3:76403014-76403033 | None:intergenic | 50.0% |
| GAAGAGGCCACAACAAGTCC+AGG | + | chr1.3:76404385-76404404 | None:intergenic | 55.0% | |
| GAGATGTGCATCCCGATTGC+CGG | - | chr1.3:76402515-76402534 | MS.gene74938:CDS | 55.0% | |
| GAGGCTCCAACAGAGTCTAG+GGG | - | chr1.3:76403245-76403264 | MS.gene74938:intron | 55.0% | |
| GGAGGCTCCAACAGAGTCTA+GGG | - | chr1.3:76403244-76403263 | MS.gene74938:intron | 55.0% | |
| GGCAATCGGGATGCACATCT+CGG | + | chr1.3:76402516-76402535 | None:intergenic | 55.0% | |
| TGGAGGCTCCAACAGAGTCT+AGG | - | chr1.3:76403243-76403262 | MS.gene74938:intron | 55.0% | |
| TTACTGGCGTTCCGGCAATC+GGG | + | chr1.3:76402529-76402548 | None:intergenic | 55.0% | |
| ! | GGGGTGTTTCGAAGCAGAAG+TGG | - | chr1.3:76403264-76403283 | MS.gene74938:intron | 55.0% |
| !! | CATCTGGGATGGCTTGCTCA+TGG | + | chr1.3:76402926-76402945 | None:intergenic | 55.0% |
| AGGATCCTGCTCCATTCGGC+TGG | - | chr1.3:76403405-76403424 | MS.gene74938:intron | 60.0% | |
| CGAGCGAGGAACTGCATTGC+CGG | - | chr1.3:76405359-76405378 | MS.gene74938:CDS | 60.0% | |
| GCCACCAGAAAAGGGGTTGC+CGG | + | chr1.3:76403974-76403993 | None:intergenic | 60.0% | |
| GGATCCTGCTCCATTCGGCT+GGG | - | chr1.3:76403406-76403425 | MS.gene74938:intron | 60.0% | |
| TCCCACTCTATCTCTGGCGC+CGG | - | chr1.3:76403952-76403971 | MS.gene74938:intron | 60.0% | |
| CCATCCCAGCCGAATGGAGC+AGG | + | chr1.3:76403413-76403432 | None:intergenic | 65.0% | |
| CCTGCTCCATTCGGCTGGGA+TGG | - | chr1.3:76403410-76403429 | MS.gene74938:intron | 65.0% | |
| GCCGGCGCCAGAGATAGAGT+GGG | + | chr1.3:76403956-76403975 | None:intergenic | 65.0% | |
| TGCCGGCGCCAGAGATAGAG+TGG | + | chr1.3:76403957-76403976 | None:intergenic | 65.0% | |
| ! | GCCGGCAACCCCTTTTCTGG+TGG | - | chr1.3:76403970-76403989 | MS.gene74938:intron | 65.0% |
| !!! | GGCGCCGGCAACCCCTTTTC+TGG | - | chr1.3:76403967-76403986 | MS.gene74938:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 76402502 | 76405386 | 76402502 | ID=MS.gene74938 |
| chr1.3 | mRNA | 76402502 | 76405386 | 76402502 | ID=MS.gene74938.t1;Parent=MS.gene74938 |
| chr1.3 | exon | 76405275 | 76405386 | 76405275 | ID=MS.gene74938.t1.exon1;Parent=MS.gene74938.t1 |
| chr1.3 | CDS | 76405275 | 76405386 | 76405275 | ID=cds.MS.gene74938.t1;Parent=MS.gene74938.t1 |
| chr1.3 | exon | 76404785 | 76404999 | 76404785 | ID=MS.gene74938.t1.exon2;Parent=MS.gene74938.t1 |
| chr1.3 | CDS | 76404785 | 76404999 | 76404785 | ID=cds.MS.gene74938.t1;Parent=MS.gene74938.t1 |
| chr1.3 | exon | 76404457 | 76404697 | 76404457 | ID=MS.gene74938.t1.exon3;Parent=MS.gene74938.t1 |
| chr1.3 | CDS | 76404457 | 76404697 | 76404457 | ID=cds.MS.gene74938.t1;Parent=MS.gene74938.t1 |
| chr1.3 | exon | 76402815 | 76402951 | 76402815 | ID=MS.gene74938.t1.exon4;Parent=MS.gene74938.t1 |
| chr1.3 | CDS | 76402815 | 76402951 | 76402815 | ID=cds.MS.gene74938.t1;Parent=MS.gene74938.t1 |
| chr1.3 | exon | 76402502 | 76402729 | 76402502 | ID=MS.gene74938.t1.exon5;Parent=MS.gene74938.t1 |
| chr1.3 | CDS | 76402502 | 76402729 | 76402502 | ID=cds.MS.gene74938.t1;Parent=MS.gene74938.t1 |
| Gene Sequence |
| Protein sequence |
