AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene056384

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056384.t1 MTR_4g067290 93.617 188 11 1 53 239 3 190 5.80e-129 365
MS.gene056384.t1 MTR_4g067290 93.617 188 11 1 53 239 3 190 6.59e-129 365
MS.gene056384.t1 MTR_4g067290 93.617 188 11 1 53 239 1 188 1.54e-128 364
MS.gene056384.t1 MTR_4g067290 84.722 216 25 3 32 239 15 230 2.22e-128 365
MS.gene056384.t1 MTR_4g067290 93.529 170 10 1 71 239 1 170 2.79e-115 330
MS.gene056384.t1 MTR_4g067290 93.529 170 10 1 71 239 1 170 3.42e-115 330
MS.gene056384.t1 MTR_2g098920 64.921 191 62 4 53 239 6 195 3.62e-79 239
MS.gene056384.t1 MTR_3g006370 47.541 122 60 2 119 236 44 165 1.56e-29 111
MS.gene056384.t1 MTR_2g098880 40.517 116 65 2 117 228 53 168 7.29e-25 99.4
MS.gene056384.t1 MTR_2g098880 40.517 116 65 2 117 228 65 180 1.16e-24 99.0
MS.gene056384.t1 MTR_5g015480 37.589 141 77 4 97 228 23 161 1.21e-18 82.8
MS.gene056384.t1 MTR_1g057920 45.652 92 44 3 125 212 34 123 2.92e-16 73.2
MS.gene056384.t1 MTR_0402s0040 41.121 107 57 3 125 227 26 130 5.50e-15 74.3
MS.gene056384.t1 MTR_2g070590 37.864 103 62 2 125 225 17 119 2.24e-13 65.5
MS.gene056384.t1 MTR_6g017200 38.776 98 54 3 125 218 58 153 7.21e-13 64.7
MS.gene056384.t1 MTR_1g070355 31.126 151 91 7 86 225 29 177 1.09e-11 64.7
MS.gene056384.t1 MTR_0137s0040 43.478 69 38 1 125 192 36 104 5.62e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056384.t1 AT3G59470 60.843 166 57 2 82 239 20 185 2.74e-67 209
MS.gene056384.t1 AT3G59470 60.843 166 57 2 82 239 20 185 2.74e-67 209
MS.gene056384.t1 AT3G59470 60.843 166 57 2 82 239 32 197 3.64e-67 209
MS.gene056384.t1 AT3G07500 52.336 107 50 1 124 229 32 138 3.34e-31 115
MS.gene056384.t1 AT2G43280 43.704 135 62 2 93 225 2 124 9.32e-27 103
MS.gene056384.t1 AT4G38180 54.630 108 45 2 124 227 72 179 1.39e-24 102
MS.gene056384.t1 AT4G12850 41.525 118 66 2 119 235 5 120 1.45e-24 95.5
MS.gene056384.t1 AT4G12850 41.525 118 66 2 119 235 5 120 1.82e-24 96.7
MS.gene056384.t1 AT4G12850 41.667 108 61 1 119 226 5 110 3.07e-24 94.7
MS.gene056384.t1 AT5G18960 36.184 152 71 2 82 233 14 139 6.09e-23 97.8
MS.gene056384.t1 AT5G18960 37.963 108 55 1 121 228 207 302 1.41e-19 88.2
MS.gene056384.t1 AT5G18960 36.184 152 71 2 82 233 14 139 6.09e-23 97.8
MS.gene056384.t1 AT5G18960 37.963 108 55 1 121 228 207 302 1.41e-19 88.2
MS.gene056384.t1 AT3G06250 38.793 116 59 1 122 237 187 290 6.00e-21 92.0
MS.gene056384.t1 AT3G06250 40.952 105 50 1 121 225 24 116 1.82e-20 90.5
MS.gene056384.t1 AT3G06250 38.793 116 59 1 122 237 187 290 6.00e-21 92.0
MS.gene056384.t1 AT3G06250 40.952 105 50 1 121 225 24 116 1.82e-20 90.5
MS.gene056384.t1 AT3G06250 38.793 116 59 1 122 237 187 290 6.00e-21 92.0
MS.gene056384.t1 AT3G06250 40.952 105 50 1 121 225 24 116 1.82e-20 90.5
MS.gene056384.t1 AT2G43280 48.864 88 43 1 140 225 2 89 8.98e-21 86.7
MS.gene056384.t1 AT1G52520 32.948 173 99 6 56 225 24 182 1.57e-17 82.0
MS.gene056384.t1 AT1G80010 37.864 103 61 1 125 227 95 194 1.54e-16 79.3
MS.gene056384.t1 AT2G32250 38.182 110 62 2 120 227 33 138 4.83e-15 74.7
MS.gene056384.t1 AT2G32250 38.182 110 62 2 120 227 33 138 4.83e-15 74.7
MS.gene056384.t1 AT2G32250 38.182 110 62 2 120 227 33 138 4.83e-15 74.7
MS.gene056384.t1 AT2G32250 38.182 110 62 2 120 227 33 138 5.16e-15 74.7
MS.gene056384.t1 AT2G32250 38.182 110 62 2 120 227 33 138 5.16e-15 74.7
MS.gene056384.t1 AT2G32250 38.182 110 62 2 120 227 33 138 5.33e-15 74.7
MS.gene056384.t1 AT2G32250 39.000 100 55 2 130 227 2 97 4.79e-14 71.6
MS.gene056384.t1 AT2G32250 39.000 100 55 2 130 227 2 97 4.97e-14 71.6
MS.gene056384.t1 AT4G19990 29.915 117 68 1 128 230 38 154 1.06e-13 70.9
MS.gene056384.t1 AT4G19990 29.915 117 68 1 128 230 24 140 1.28e-13 70.5
MS.gene056384.t1 AT4G19990 29.915 117 68 1 128 230 24 140 1.28e-13 70.5
MS.gene056384.t1 AT4G19990 29.915 117 68 1 128 230 24 140 2.77e-13 69.7
MS.gene056384.t1 AT4G19990 29.915 117 68 1 128 230 24 140 2.80e-13 69.7
MS.gene056384.t1 AT4G19990 29.915 117 68 1 128 230 24 140 2.80e-13 69.7
MS.gene056384.t1 AT3G22170 28.859 149 89 4 100 233 46 192 1.19e-11 64.7
MS.gene056384.t1 AT3G22170 28.859 149 89 4 100 233 46 192 1.19e-11 64.7
MS.gene056384.t1 AT4G15090 31.776 107 70 2 124 228 50 155 5.96e-11 62.8
MS.gene056384.t1 AT4G15090 31.776 107 70 2 124 228 50 155 5.96e-11 62.8
MS.gene056384.t1 AT4G15090 31.776 107 70 2 124 228 50 155 5.96e-11 62.8
MS.gene056384.t1 AT4G15090 31.776 107 70 2 124 228 50 155 5.96e-11 62.8
MS.gene056384.t1 AT4G15090 31.776 107 70 2 124 228 50 155 5.96e-11 62.8
MS.gene056384.t1 AT2G27110 39.216 102 48 3 124 225 48 135 9.03e-11 62.0
MS.gene056384.t1 AT2G27110 39.216 102 48 3 124 225 48 135 9.03e-11 62.0

Find 74 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAAATTAATTCTGGTAAA+TGG 0.122359 4.1:+34010214 MS.gene056384:CDS
GGATGAATGAAAACCGAAAA+TGG 0.207083 4.1:+34008340 None:intergenic
CAGAAACAAGGGTTGGTTGC+AGG 0.300475 4.1:+34010175 MS.gene056384:CDS
GCGGCCACTACAACCGCAAC+TGG 0.314460 4.1:-34008906 None:intergenic
GAAAATTAATTCTGGTAAAT+GGG 0.333770 4.1:+34010215 MS.gene056384:CDS
ATGATGAGGAAAATTAATTC+TGG 0.337234 4.1:+34010207 MS.gene056384:CDS
ATCTCCTTTCTACTACTTCC+AGG 0.346138 4.1:-34010279 None:intergenic
GAGATTGATGACTCTGTTAA+CGG 0.380618 4.1:+34009766 MS.gene056384:CDS
AGGAAAGACGGAACTGCTAT+TGG 0.388968 4.1:+34010081 MS.gene056384:CDS
AACGTGACTCAAGATTCTTC+TGG 0.391633 4.1:+34009892 MS.gene056384:CDS
CTTGAGTCACGTTATCATCT+TGG 0.395456 4.1:-34009882 None:intergenic
TCTTCTTCCATGTATTCATC+AGG 0.412222 4.1:-34009832 None:intergenic
TCTTGGTCTTGTTTGTAAGA+TGG 0.422563 4.1:-34009865 None:intergenic
TCTACTACTTCCAGGATTCA+AGG 0.432111 4.1:-34010271 None:intergenic
GCAGAAATCTGCAATGCAAT+CGG 0.433377 4.1:-34008856 None:intergenic
GGAGATGTTTGAAATTTATC+CGG 0.433714 4.1:+34010296 MS.gene056384:CDS
TTCTGCTGAGGAGCCTTATG+TGG 0.437415 4.1:+34009960 MS.gene056384:CDS
CGCAACTGGGCCGCTATCAG+TGG 0.439159 4.1:-34008892 None:intergenic
GGCTCCTCAGCAGAAGCGTC+TGG 0.448272 4.1:-34009952 None:intergenic
TGAGGAGCCTTATGTGGGTC+AGG 0.449928 4.1:+34009966 MS.gene056384:CDS
TTATAATTTATACAATTCTT+CGG 0.461373 4.1:-34010341 None:intergenic
TAAGCAAGCTCTCACGATCA+AGG 0.471737 4.1:+34010061 MS.gene056384:CDS
CACACACATCCCTTGAATCC+TGG 0.472295 4.1:+34010261 MS.gene056384:CDS
TCAACCTATGTAGCCAATAG+TGG 0.479686 4.1:+34008812 MS.gene056384:intron
CACTGATAGCGGCCCAGTTG+CGG 0.495793 4.1:+34008893 MS.gene056384:CDS
CGGGTATCGTGTAGCGCCCA+AGG 0.502481 4.1:-34008836 None:intergenic
GATGAATGAAAACCGAAAAT+GGG 0.502708 4.1:+34008341 None:intergenic
TCGAACTCCTGACCCACATA+AGG 0.503181 4.1:-34009973 None:intergenic
CTACTACTTCCAGGATTCAA+GGG 0.508347 4.1:-34010270 None:intergenic
AGAAACAAGGGTTGGTTGCA+GGG 0.508414 4.1:+34010176 MS.gene056384:CDS
CAGAAATCTGCAATGCAATC+GGG 0.509863 4.1:-34008855 None:intergenic
TAGCGCCCAAGGGCCACTAT+TGG 0.510169 4.1:-34008825 None:intergenic
AAATGGGACGGGTGTAAACT+CGG 0.518692 4.1:+34008357 MS.gene056384:CDS
GGTTATTACGAAGTTTGTAA+AGG 0.521568 4.1:+34010236 MS.gene056384:CDS
AGCAGAAGCGTCTGGTAGTG+TGG 0.524624 4.1:-34009944 None:intergenic
ATTCAGGTACGACATGTCAT+TGG 0.533991 4.1:+34009452 MS.gene056384:intron
TGTAGCCAATAGTGGCCCTT+GGG 0.537641 4.1:+34008820 MS.gene056384:intron
CGGCCCAGTTGCGGTTGTAG+TGG 0.538785 4.1:+34008902 MS.gene056384:CDS
AATGCATACGCAGCCGAGGT+TGG 0.541461 4.1:+34010024 MS.gene056384:CDS
CGAAAAGATTGTGAGGCAAA+GGG 0.544339 4.1:+34010152 MS.gene056384:CDS
GCGAAAAGATTGTGAGGCAA+AGG 0.552809 4.1:+34010151 MS.gene056384:CDS
ATGTAGCCAATAGTGGCCCT+TGG 0.558259 4.1:+34008819 MS.gene056384:intron
GGCTCTTGTTTGCAACAAAG+AGG 0.560233 4.1:+34010107 MS.gene056384:CDS
GAATCCTGGAAGTAGTAGAA+AGG 0.569556 4.1:+34010275 MS.gene056384:CDS
GATGGTGCCATGGTTGTAGC+TGG 0.569629 4.1:+34009802 MS.gene056384:CDS
TGGTAGTGTGGGAACTGCAG+TGG 0.577611 4.1:-34009932 None:intergenic
GCTCTTGTTTGCAACAAAGA+GGG 0.580043 4.1:+34010108 MS.gene056384:CDS
TGAGGCAAAGGGCAGAAACA+AGG 0.583136 4.1:+34010163 MS.gene056384:CDS
TAGCATACCTGATGAATACA+TGG 0.584054 4.1:+34009825 MS.gene056384:CDS
GCAGAAGCGTCTGGTAGTGT+GGG 0.584434 4.1:-34009943 None:intergenic
GGTAGTGTGGGAACTGCAGT+GGG 0.584997 4.1:-34009931 None:intergenic
AGACGGAACTGCTATTGGAC+GGG 0.589838 4.1:+34010086 MS.gene056384:CDS
CTCTCACGATCAAGGAAAGA+CGG 0.590017 4.1:+34010069 MS.gene056384:CDS
ATGAAAACCGAAAATGGGAC+GGG 0.595960 4.1:+34008346 MS.gene056384:CDS
GCAACTGGGCCGCTATCAGT+GGG 0.604666 4.1:-34008891 None:intergenic
TTATAGGACATTGACAGTAG+CGG 0.610440 4.1:-34008925 None:intergenic
AAGACGGAACTGCTATTGGA+CGG 0.612304 4.1:+34010085 MS.gene056384:CDS
TCTGCTGAGGAGCCTTATGT+GGG 0.621782 4.1:+34009961 MS.gene056384:CDS
CGGCCACTACAACCGCAACT+GGG 0.625274 4.1:-34008905 None:intergenic
AATGAAAACCGAAAATGGGA+CGG 0.627400 4.1:+34008345 None:intergenic
CAAAGGGCAGAAACAAGGGT+TGG 0.628129 4.1:+34010168 MS.gene056384:CDS
GGGTATCGTGTAGCGCCCAA+GGG 0.628214 4.1:-34008835 None:intergenic
TTACAATGCATACGCAGCCG+AGG 0.629238 4.1:+34010020 MS.gene056384:CDS
TATGCTACCAGCTACAACCA+TGG 0.631572 4.1:-34009809 None:intergenic
TACAGTAAGAGATGGTGCCA+TGG 0.635293 4.1:+34009792 MS.gene056384:CDS
AGATGTAGTCCCACTGATAG+CGG 0.637596 4.1:+34008882 MS.gene056384:CDS
ACTACCAGACGCTTCTGCTG+AGG 0.646967 4.1:+34009948 MS.gene056384:CDS
AACGGCGATACAGTAAGAGA+TGG 0.652494 4.1:+34009784 MS.gene056384:CDS
GAGGCAAAGGGCAGAAACAA+GGG 0.664007 4.1:+34010164 MS.gene056384:CDS
GCAGGGCAATGATTATGATG+AGG 0.664420 4.1:+34010193 MS.gene056384:CDS
ACAAGCGCGAAAAGATTGTG+AGG 0.665448 4.1:+34010145 MS.gene056384:CDS
GTGACTCAAGATTCTTCTGG+AGG 0.668755 4.1:+34009895 MS.gene056384:CDS
TGTGGGTCAGGAGTTCGAGT+CGG 0.669514 4.1:+34009978 MS.gene056384:CDS
GCGTATGATGAATCCAACCT+CGG 0.694329 4.1:-34010037 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAATATTCAGAATTTTAT+AGG - chr4.1:34008944-34008963 None:intergenic 10.0%
!!! ATAAAAAATAATATGAGTTT+TGG + chr4.1:34008745-34008764 MS.gene056384:intron 10.0%
!!! ATATAATTTTTTTACTATTC+AGG + chr4.1:34009436-34009455 MS.gene056384:intron 10.0%
!!! TAAAAAATAATATGAGTTTT+GGG + chr4.1:34008746-34008765 MS.gene056384:intron 10.0%
!!! TAAAATTCTGAATATTTTTT+TGG + chr4.1:34008945-34008964 MS.gene056384:intron 10.0%
!! AAAACTTATTTGCTTTATAT+TGG + chr4.1:34009037-34009056 MS.gene056384:intron 15.0%
!! AAACTTATTTGCTTTATATT+GGG + chr4.1:34009038-34009057 MS.gene056384:intron 15.0%
!!! ACAAATTATTAGATACTTTT+CGG - chr4.1:34009301-34009320 None:intergenic 15.0%
!!! TAAGCATTTAAAATAAACAA+GGG - chr4.1:34008988-34009007 None:intergenic 15.0%
!!! TTTAGTTTTGTAATCTATTT+TGG + chr4.1:34008538-34008557 MS.gene056384:intron 15.0%
!! ATGACAATTATATCTTAAGT+AGG - chr4.1:34009382-34009401 None:intergenic 20.0%
!! GAAAATTAATTCTGGTAAAT+GGG + chr4.1:34010215-34010234 MS.gene056384:CDS 20.0%
!! TTACAAATATAGCTTATGAT+TGG - chr4.1:34008427-34008446 None:intergenic 20.0%
!!! CAAATTATTAGATACTTTTC+GGG - chr4.1:34009300-34009319 None:intergenic 20.0%
!!! CTAAGCATTTAAAATAAACA+AGG - chr4.1:34008989-34009008 None:intergenic 20.0%
!!! GAATATTTTTTTGGACTTTT+TGG + chr4.1:34008954-34008973 MS.gene056384:intron 20.0%
!!! GCTTTGTTTTGTTTATTATT+GGG + chr4.1:34008603-34008622 MS.gene056384:intron 20.0%
!!! TGAGTTGTTTTAAATTTTGA+AGG + chr4.1:34009010-34009029 MS.gene056384:intron 20.0%
! AAAAATGTTTACTTTCAGAG+GGG - chr4.1:34008719-34008738 None:intergenic 25.0%
! AATAAACAAAACAAAGCCTT+TGG - chr4.1:34008600-34008619 None:intergenic 25.0%
! ATGATGAGGAAAATTAATTC+TGG + chr4.1:34010207-34010226 MS.gene056384:CDS 25.0%
! GAAAAATGTTTACTTTCAGA+GGG - chr4.1:34008720-34008739 None:intergenic 25.0%
! GGAAAATTAATTCTGGTAAA+TGG + chr4.1:34010214-34010233 MS.gene056384:CDS 25.0%
! GTAACGAAACACAATTAAAA+TGG - chr4.1:34009555-34009574 None:intergenic 25.0%
! TGAAAAATGTTTACTTTCAG+AGG - chr4.1:34008721-34008740 None:intergenic 25.0%
! TTAGAGCTTATCTCATAAAA+TGG - chr4.1:34008451-34008470 None:intergenic 25.0%
!!! ATAATATGAGTTTTGGGATT+AGG + chr4.1:34008752-34008771 MS.gene056384:intron 25.0%
!!! GGCTTTGTTTTGTTTATTAT+TGG + chr4.1:34008602-34008621 MS.gene056384:intron 25.0%
!!! TGTAATCTATTTTGGTTGTT+TGG + chr4.1:34008546-34008565 MS.gene056384:intron 25.0%
AATGATATGTCGTATCTGAA+TGG - chr4.1:34009504-34009523 None:intergenic 30.0%
ACATAGAACGATACAGATAT+AGG - chr4.1:34009639-34009658 None:intergenic 30.0%
ATTGAAGATGCATATTGCAT+CGG - chr4.1:34009351-34009370 None:intergenic 30.0%
GATATCGATACTTTCCAATT+TGG - chr4.1:34009257-34009276 None:intergenic 30.0%
GGTTATTACGAAGTTTGTAA+AGG + chr4.1:34010236-34010255 MS.gene056384:CDS 30.0%
! AAAGCTTTGATACTCCAAAT+TGG + chr4.1:34009240-34009259 MS.gene056384:intron 30.0%
! ATATGTTTGTTAACGCATCT+TGG + chr4.1:34009580-34009599 MS.gene056384:intron 30.0%
! CTATAAGATTTTCAGTGTTC+AGG - chr4.1:34009718-34009737 None:intergenic 30.0%
! GGAGATGTTTGAAATTTATC+CGG + chr4.1:34010296-34010315 MS.gene056384:CDS 30.0%
!! ATTGGGAGTGCATTTTATTT+TGG + chr4.1:34008620-34008639 MS.gene056384:intron 30.0%
!!! AATCTATTTTGGTTGTTTGG+AGG + chr4.1:34008549-34008568 MS.gene056384:intron 30.0%
AGATTTCAGTATGCGAGTTA+TGG + chr4.1:34009212-34009231 MS.gene056384:intron 35.0%
ATTGTTTCCATAAGCTGTCT+AGG + chr4.1:34008385-34008404 MS.gene056384:intron 35.0%
CTGTATCGTTCTATGTATCT+GGG + chr4.1:34009643-34009662 MS.gene056384:intron 35.0%
GAGATACTCTTCCTGATTTA+GGG + chr4.1:34008503-34008522 MS.gene056384:intron 35.0%
GGATAGTATTCGACAATCAT+TGG + chr4.1:34008570-34008589 MS.gene056384:intron 35.0%
GTAAAGCATAACCCTAAATC+AGG - chr4.1:34008517-34008536 None:intergenic 35.0%
TACTGAAATCTATGTAGTCG+TGG - chr4.1:34009203-34009222 None:intergenic 35.0%
TAGCATACCTGATGAATACA+TGG + chr4.1:34009825-34009844 MS.gene056384:CDS 35.0%
TCTGTATCGTTCTATGTATC+TGG + chr4.1:34009642-34009661 MS.gene056384:intron 35.0%
TCTTCTTCCATGTATTCATC+AGG - chr4.1:34009835-34009854 None:intergenic 35.0%
TTATAGGACATTGACAGTAG+CGG - chr4.1:34008928-34008947 None:intergenic 35.0%
! GAGATTGATGACTCTGTTAA+CGG + chr4.1:34009766-34009785 MS.gene056384:CDS 35.0%
! TAAAAAGCATAGGAACTGAC+CGG - chr4.1:34010318-34010337 None:intergenic 35.0%
! TCTTCGGTAGTAAAAAGCAT+AGG - chr4.1:34010328-34010347 None:intergenic 35.0%
! TTTTTCTCCTAGACAGCTTA+TGG - chr4.1:34008395-34008414 None:intergenic 35.0%
!! ATACTTTTCGGGAATGTATC+AGG - chr4.1:34009289-34009308 None:intergenic 35.0%
!! CTAAATCAGGAAGAGTATCT+CGG - chr4.1:34008504-34008523 None:intergenic 35.0%
!! TCTTGGTCTTGTTTGTAAGA+TGG - chr4.1:34009868-34009887 None:intergenic 35.0%
AACGTGACTCAAGATTCTTC+TGG + chr4.1:34009892-34009911 MS.gene056384:CDS 40.0%
ATCTCCTTTCTACTACTTCC+AGG - chr4.1:34010282-34010301 None:intergenic 40.0%
ATGAAAACCGAAAATGGGAC+GGG + chr4.1:34008346-34008365 MS.gene056384:CDS 40.0%
ATTCAGGTACGACATGTCAT+TGG + chr4.1:34009452-34009471 MS.gene056384:intron 40.0%
CAGAAATCTGCAATGCAATC+GGG - chr4.1:34008858-34008877 None:intergenic 40.0%
CGAAAAGATTGTGAGGCAAA+GGG + chr4.1:34010152-34010171 MS.gene056384:CDS 40.0%
CGAGATACTCTTCCTGATTT+AGG + chr4.1:34008502-34008521 MS.gene056384:intron 40.0%
CGGCTTATGTCAGCTTATTT+AGG - chr4.1:34008484-34008503 None:intergenic 40.0%
CTACTACTTCCAGGATTCAA+GGG - chr4.1:34010273-34010292 None:intergenic 40.0%
CTTGAGTCACGTTATCATCT+TGG - chr4.1:34009885-34009904 None:intergenic 40.0%
GAAATCTATGTAGTCGTGGT+GGG - chr4.1:34009199-34009218 None:intergenic 40.0%
GAATCCTGGAAGTAGTAGAA+AGG + chr4.1:34010275-34010294 MS.gene056384:CDS 40.0%
GCAGAAATCTGCAATGCAAT+CGG - chr4.1:34008859-34008878 None:intergenic 40.0%
TCAACCTATGTAGCCAATAG+TGG + chr4.1:34008812-34008831 MS.gene056384:intron 40.0%
TCTACTACTTCCAGGATTCA+AGG - chr4.1:34010274-34010293 None:intergenic 40.0%
TCTATGTATCTGGGCTTCTT+AGG + chr4.1:34009652-34009671 MS.gene056384:intron 40.0%
TGAAATCTATGTAGTCGTGG+TGG - chr4.1:34009200-34009219 None:intergenic 40.0%
TGTTAACGCATCTTGGTCAT+GGG + chr4.1:34009587-34009606 MS.gene056384:intron 40.0%
TTGTTAACGCATCTTGGTCA+TGG + chr4.1:34009586-34009605 MS.gene056384:intron 40.0%
! GACAATCATTGGTGATCCAA+AGG + chr4.1:34008581-34008600 MS.gene056384:intron 40.0%
! GCTCTTGTTTGCAACAAAGA+GGG + chr4.1:34010108-34010127 MS.gene056384:CDS 40.0%
!!! CAGATCTTTTGTTGTTGCAG+TGG + chr4.1:34009738-34009757 MS.gene056384:intron 40.0%
AAATGGGACGGGTGTAAACT+CGG + chr4.1:34008357-34008376 MS.gene056384:CDS 45.0%
AACGGCGATACAGTAAGAGA+TGG + chr4.1:34009784-34009803 MS.gene056384:CDS 45.0%
AAGACGGAACTGCTATTGGA+CGG + chr4.1:34010085-34010104 MS.gene056384:CDS 45.0%
ACAAGCGCGAAAAGATTGTG+AGG + chr4.1:34010145-34010164 MS.gene056384:CDS 45.0%
AGATGTAGTCCCACTGATAG+CGG + chr4.1:34008882-34008901 MS.gene056384:CDS 45.0%
AGGAAAGACGGAACTGCTAT+TGG + chr4.1:34010081-34010100 MS.gene056384:CDS 45.0%
CTCTCACGATCAAGGAAAGA+CGG + chr4.1:34010069-34010088 MS.gene056384:CDS 45.0%
GCAGGGCAATGATTATGATG+AGG + chr4.1:34010193-34010212 MS.gene056384:CDS 45.0%
GCGAAAAGATTGTGAGGCAA+AGG + chr4.1:34010151-34010170 MS.gene056384:CDS 45.0%
GCGTATGATGAATCCAACCT+CGG - chr4.1:34010040-34010059 None:intergenic 45.0%
GTGACTCAAGATTCTTCTGG+AGG + chr4.1:34009895-34009914 MS.gene056384:CDS 45.0%
TAAGCAAGCTCTCACGATCA+AGG + chr4.1:34010061-34010080 MS.gene056384:CDS 45.0%
TATGCTACCAGCTACAACCA+TGG - chr4.1:34009812-34009831 None:intergenic 45.0%
TTTCAGAGGGGACTACAATG+AGG - chr4.1:34008707-34008726 None:intergenic 45.0%
! ACAATCTTTTCGCGCTTGTC+AGG - chr4.1:34010144-34010163 None:intergenic 45.0%
! GGCTCTTGTTTGCAACAAAG+AGG + chr4.1:34010107-34010126 MS.gene056384:CDS 45.0%
! GTTTACACCCGTCCCATTTT+CGG - chr4.1:34008356-34008375 None:intergenic 45.0%
! TACAGTAAGAGATGGTGCCA+TGG + chr4.1:34009792-34009811 MS.gene056384:CDS 45.0%
!! AGAAACAAGGGTTGGTTGCA+GGG + chr4.1:34010176-34010195 MS.gene056384:CDS 45.0%
AGACGGAACTGCTATTGGAC+GGG + chr4.1:34010086-34010105 MS.gene056384:CDS 50.0%
AGGGGACTACAATGAGGACA+CGG - chr4.1:34008701-34008720 None:intergenic 50.0%
ATGTAGCCAATAGTGGCCCT+TGG + chr4.1:34008819-34008838 MS.gene056384:intron 50.0%
CAAAGGGCAGAAACAAGGGT+TGG + chr4.1:34010168-34010187 MS.gene056384:CDS 50.0%
CACACACATCCCTTGAATCC+TGG + chr4.1:34010261-34010280 MS.gene056384:CDS 50.0%
GAGGCAAAGGGCAGAAACAA+GGG + chr4.1:34010164-34010183 MS.gene056384:CDS 50.0%
TAACGCATCTTGGTCATGGG+CGG + chr4.1:34009590-34009609 MS.gene056384:intron 50.0%
TCGAACTCCTGACCCACATA+AGG - chr4.1:34009976-34009995 None:intergenic 50.0%
TGAGGCAAAGGGCAGAAACA+AGG + chr4.1:34010163-34010182 MS.gene056384:CDS 50.0%
TGTAGCCAATAGTGGCCCTT+GGG + chr4.1:34008820-34008839 MS.gene056384:intron 50.0%
TTACAATGCATACGCAGCCG+AGG + chr4.1:34010020-34010039 MS.gene056384:CDS 50.0%
! AGGGCCACTATTGGCTACAT+AGG - chr4.1:34008819-34008838 None:intergenic 50.0%
! ATGTAGTCGTGGTGGGATAG+CGG - chr4.1:34009192-34009211 None:intergenic 50.0%
! TCTGCTGAGGAGCCTTATGT+GGG + chr4.1:34009961-34009980 MS.gene056384:CDS 50.0%
! TTCTGCTGAGGAGCCTTATG+TGG + chr4.1:34009960-34009979 MS.gene056384:CDS 50.0%
!! ATAGCGGGTAGCGGAAGTTT+AGG - chr4.1:34009176-34009195 None:intergenic 50.0%
!! CAGAAACAAGGGTTGGTTGC+AGG + chr4.1:34010175-34010194 MS.gene056384:CDS 50.0%
!! TAGCGGGTAGCGGAAGTTTA+GGG - chr4.1:34009175-34009194 None:intergenic 50.0%
AATGCATACGCAGCCGAGGT+TGG + chr4.1:34010024-34010043 MS.gene056384:CDS 55.0%
ACTACCAGACGCTTCTGCTG+AGG + chr4.1:34009948-34009967 MS.gene056384:CDS 55.0%
GGTAGTGTGGGAACTGCAGT+GGG - chr4.1:34009934-34009953 None:intergenic 55.0%
TGTGGGTCAGGAGTTCGAGT+CGG + chr4.1:34009978-34009997 MS.gene056384:CDS 55.0%
! TGAGGAGCCTTATGTGGGTC+AGG + chr4.1:34009966-34009985 MS.gene056384:CDS 55.0%
! TGGTAGTGTGGGAACTGCAG+TGG - chr4.1:34009935-34009954 None:intergenic 55.0%
! TGTAGTCGTGGTGGGATAGC+GGG - chr4.1:34009191-34009210 None:intergenic 55.0%
!! AGCAGAAGCGTCTGGTAGTG+TGG - chr4.1:34009947-34009966 None:intergenic 55.0%
!! GATGGTGCCATGGTTGTAGC+TGG + chr4.1:34009802-34009821 MS.gene056384:CDS 55.0%
!! GCAGAAGCGTCTGGTAGTGT+GGG - chr4.1:34009946-34009965 None:intergenic 55.0%
CGGCCACTACAACCGCAACT+GGG - chr4.1:34008908-34008927 None:intergenic 60.0%
GCAACTGGGCCGCTATCAGT+GGG - chr4.1:34008894-34008913 None:intergenic 60.0%
TAGCGCCCAAGGGCCACTAT+TGG - chr4.1:34008828-34008847 None:intergenic 60.0%
! GGGTATCGTGTAGCGCCCAA+GGG - chr4.1:34008838-34008857 None:intergenic 60.0%
!! CACTGATAGCGGCCCAGTTG+CGG + chr4.1:34008893-34008912 MS.gene056384:CDS 60.0%
CGCAACTGGGCCGCTATCAG+TGG - chr4.1:34008895-34008914 None:intergenic 65.0%
CGGCCCAGTTGCGGTTGTAG+TGG + chr4.1:34008902-34008921 MS.gene056384:CDS 65.0%
GCGGCCACTACAACCGCAAC+TGG - chr4.1:34008909-34008928 None:intergenic 65.0%
! CGGGTATCGTGTAGCGCCCA+AGG - chr4.1:34008839-34008858 None:intergenic 65.0%
!! CGTGGTGGGATAGCGGGTAG+CGG - chr4.1:34009185-34009204 None:intergenic 65.0%
!! GGCTCCTCAGCAGAAGCGTC+TGG - chr4.1:34009955-34009974 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 34008346 34010356 34008346 ID=MS.gene056384
chr4.1 mRNA 34008346 34010356 34008346 ID=MS.gene056384.t1;Parent=MS.gene056384
chr4.1 exon 34008346 34008378 34008346 ID=MS.gene056384.t1.exon1;Parent=MS.gene056384.t1
chr4.1 CDS 34008346 34008378 34008346 ID=cds.MS.gene056384.t1;Parent=MS.gene056384.t1
chr4.1 exon 34008825 34008932 34008825 ID=MS.gene056384.t1.exon2;Parent=MS.gene056384.t1
chr4.1 CDS 34008825 34008932 34008825 ID=cds.MS.gene056384.t1;Parent=MS.gene056384.t1
chr4.1 exon 34009458 34009473 34009458 ID=MS.gene056384.t1.exon3;Parent=MS.gene056384.t1
chr4.1 CDS 34009458 34009473 34009458 ID=cds.MS.gene056384.t1;Parent=MS.gene056384.t1
chr4.1 exon 34009758 34010356 34009758 ID=MS.gene056384.t1.exon4;Parent=MS.gene056384.t1
chr4.1 CDS 34009758 34010356 34009758 ID=cds.MS.gene056384.t1;Parent=MS.gene056384.t1
Gene Sequence

>MS.gene056384

ATGAAAACCGAAAATGGGACGGGTGTAAACTCGGTATAAATTGTTTCCATAAGCTGTCTAGGAGAAAAAAACTTCAAACCAATCATAAGCTATATTTGTAAGCCATTTTATGAGATAAGCTCTAAGTAAATTCTTCCTAAATAAGCTGACATAAGCCGAGATACTCTTCCTGATTTAGGGTTATGCTTTACTTTTAGTTTTGTAATCTATTTTGGTTGTTTGGAGGATAGTATTCGACAATCATTGGTGATCCAAAGGCTTTGTTTTGTTTATTATTGGGAGTGCATTTTATTTTGGTTGTTGTGTTGTGAATTTTATTGTCATTGTTTGCTTTTCAGAACTTCTTTGTAAACCGTGTCCTCATTGTAGTCCCCTCTGAAAGTAAACATTTTTCATAAAATAAAAAATAATATGAGTTTTGGGATTAGGACTATATTTATTGACACGATCTCTCTTTAATTTGATTTCAACCTATGTAGCCAATAGTGGCCCTTGGGCGCTACACGATACCCGATTGCATTGCAGATTTCTGCAGCAGATGTAGTCCCACTGATAGCGGCCCAGTTGCGGTTGTAGTGGCCGCTACTGTCAATGTCCTATAAAATTCTGAATATTTTTTTGGACTTTTTGGTAATTTCACCCTTGTTTATTTTAAATGCTTAGATGAGTTGTTTTAAATTTTGAAGGCTCTAAAACTTATTTGCTTTATATTGGGTTTGAATATTGATAGCAATTAACTTTGATTATTAGTTATGAATATGTCTTAAGTGTTGTGTTCTTCTATATTTTTAGCTTTTATGTGTATAATGAGTTTCTTGTATTGTTTCCCTAAACTTCCGCTACCCGCTATCCCACCACGACTACATAGATTTCAGTATGCGAGTTATGGAATATAAAGCTTTGATACTCCAAATTGGAAAGTATCGATATCTGACACGTACCTGATACATTCCCGAAAAGTATCTAATAATTTGTTTTGTTCTTTTTTTAAAAATGTTTTCTCCGATGCAATATGCATCTTCAATACGTCTTACCTACTTAAGATATAATTGTCATTCAGATATGACATGTCATTTATAGTGACTTTTTAATATAATTTTTTTACTATTCAGGTACGACATGTCATTGGTAGTGACTTTTTAGTATAACTTTTTACCATTCAGATACGACATATCATTGATAGTGACTTTTTAGTATAATTTTTTGCCATTTTAATTGTGTTTCGTTACATCATATATGTTTGTTAACGCATCTTGGTCATGGGCGGCACATCTTGATTTTTCAAATATTCCTATATCTGTATCGTTCTATGTATCTGGGCTTCTTAGGTTATCGATCAACTTTGTAGACTGTTCTGTAGAATATTTCACCTGAACACTGAAAATCTTATAGCAGATCTTTTGTTGTTGCAGTGGAGTTTGAGATTGATGACTCTGTTAACGGCGATACAGTAAGAGATGGTGCCATGGTTGTAGCTGGTAGCATACCTGATGAATACATGGAAGAAGAAAGTTCTGAACCATCTTACAAACAAGACCAAGATGATAACGTGACTCAAGATTCTTCTGGAGGAGTGTTAACAATACCCACTGCAGTTCCCACACTACCAGACGCTTCTGCTGAGGAGCCTTATGTGGGTCAGGAGTTCGAGTCGGAAGCAGCAGCGCATGCATTTTACAATGCATACGCAGCCGAGGTTGGATTCATCATACGCGTAAGCAAGCTCTCACGATCAAGGAAAGACGGAACTGCTATTGGACGGGCTCTTGTTTGCAACAAAGAGGGTTACAGAATGCCTGACAAGCGCGAAAAGATTGTGAGGCAAAGGGCAGAAACAAGGGTTGGTTGCAGGGCAATGATTATGATGAGGAAAATTAATTCTGGTAAATGGGTTATTACGAAGTTTGTAAAGGAGCACACACATCCCTTGAATCCTGGAAGTAGTAGAAAGGAGATGTTTGAAATTTATCCGGTCAGTTCCTATGCTTTTTACTACCGAAGAATTGTATAA
Protein sequence

>MS.gene056384.t1

MKTENGTGVNSPIVALGRYTIPDCIADFCSRCSPTDSGPVAVVVAATVRHVIVEFEIDDSVNGDTVRDGAMVVAGSIPDEYMEEESSEPSYKQDQDDNVTQDSSGGVLTIPTAVPTLPDASAEEPYVGQEFESEAAAHAFYNAYAAEVGFIIRVSKLSRSRKDGTAIGRALVCNKEGYRMPDKREKIVRQRAETRVGCRAMIMMRKINSGKWVITKFVKEHTHPLNPGSSRKEMFEIYPVSSYAFYYRRIV