AlfalfaGEDB | MS.gene46885

M. sativa cultivar XinJiangDaYe / MS.gene46885

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46885.t1	KEH30332.1	88.1	286	20	2	19	290	12	297	1.10E-128	469.5

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46885.t1	Q9SZL8	54.6	108	45	2	108	211	72	179	4.0e-23	110.2

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46885.t1	A0A072UKW2	88.1	286	20	2	19	290	12	297	7.9e-129	469.5

TFs/TRs:

Gene ID	Type	Classification
MS.gene46885.t1	TF	FAR1

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049254	MS.gene46885	0.815194	1.05E-51	-1.69E-46
MS.gene049343	MS.gene46885	0.811027	8.60E-51	-1.69E-46
MS.gene049435	MS.gene46885	0.806322	8.70E-50	-1.69E-46
MS.gene049452	MS.gene46885	0.813785	2.15E-51	-1.69E-46
MS.gene050442	MS.gene46885	0.805676	1.19E-49	-1.69E-46
MS.gene050605	MS.gene46885	0.819002	1.46E-52	-1.69E-46
MS.gene050750	MS.gene46885	0.842263	2.88E-58	-1.69E-46
MS.gene050844	MS.gene46885	0.802759	4.82E-49	-1.69E-46
MS.gene050953	MS.gene46885	0.850298	1.86E-60	-1.69E-46
MS.gene051181	MS.gene46885	0.807362	5.24E-50	-1.69E-46
MS.gene051368	MS.gene46885	0.827726	1.33E-54	-1.69E-46
MS.gene051594	MS.gene46885	0.800075	1.71E-48	-1.69E-46
MS.gene052333	MS.gene46885	0.846683	1.86E-59	-1.69E-46
MS.gene052519	MS.gene46885	0.832647	8.39E-56	-1.69E-46
MS.gene052584	MS.gene46885	0.802257	6.11E-49	-1.69E-46
MS.gene052867	MS.gene46885	0.804644	1.96E-49	-1.69E-46
MS.gene053006	MS.gene46885	0.816863	4.44E-52	-1.69E-46
MS.gene053008	MS.gene46885	0.811862	5.66E-51	-1.69E-46
MS.gene053166	MS.gene46885	0.818797	1.63E-52	-1.69E-46
MS.gene053202	MS.gene46885	0.801106	1.05E-48	-1.69E-46
MS.gene053226	MS.gene46885	0.807502	4.90E-50	-1.69E-46
MS.gene05414	MS.gene46885	0.818004	2.46E-52	-1.69E-46
MS.gene05415	MS.gene46885	0.838535	2.71E-57	-1.69E-46
MS.gene054236	MS.gene46885	0.811803	5.83E-51	-1.69E-46
MS.gene054291	MS.gene46885	-0.804523	2.07E-49	-1.69E-46
MS.gene054405	MS.gene46885	0.848076	7.71E-60	-1.69E-46
MS.gene054479	MS.gene46885	0.806251	9.01E-50	-1.69E-46
MS.gene054559	MS.gene46885	0.807238	5.57E-50	-1.69E-46
MS.gene054775	MS.gene46885	0.819751	9.85E-53	-1.69E-46
MS.gene05510	MS.gene46885	0.811839	5.73E-51	-1.69E-46
MS.gene055701	MS.gene46885	0.838337	3.05E-57	-1.69E-46
MS.gene055818	MS.gene46885	0.824757	6.79E-54	-1.69E-46
MS.gene055926	MS.gene46885	0.806677	7.32E-50	-1.69E-46
MS.gene056162	MS.gene46885	0.808821	2.57E-50	-1.69E-46
MS.gene056174	MS.gene46885	0.801457	8.92E-49	-1.69E-46
MS.gene056384	MS.gene46885	0.821444	4.03E-53	-1.69E-46
MS.gene056506	MS.gene46885	0.814585	1.43E-51	-1.69E-46
MS.gene056779	MS.gene46885	0.805497	1.30E-49	-1.69E-46
MS.gene057026	MS.gene46885	0.807293	5.43E-50	-1.69E-46
MS.gene057208	MS.gene46885	0.837179	6.06E-57	-1.69E-46
MS.gene057598	MS.gene46885	0.801281	9.70E-49	-1.69E-46
MS.gene057693	MS.gene46885	0.805894	1.07E-49	-1.69E-46
MS.gene057855	MS.gene46885	0.828388	9.25E-55	-1.69E-46
MS.gene058502	MS.gene46885	0.808092	3.67E-50	-1.69E-46
MS.gene058548	MS.gene46885	0.807305	5.39E-50	-1.69E-46
MS.gene05868	MS.gene46885	0.80563	1.22E-49	-1.69E-46
MS.gene058979	MS.gene46885	0.851148	1.07E-60	-1.69E-46
MS.gene059609	MS.gene46885	0.816601	5.08E-52	-1.69E-46
MS.gene05979	MS.gene46885	0.817876	2.63E-52	-1.69E-46
MS.gene060011	MS.gene46885	0.814428	1.55E-51	-1.69E-46
MS.gene060322	MS.gene46885	0.809741	1.63E-50	-1.69E-46
MS.gene060572	MS.gene46885	0.807795	4.24E-50	-1.69E-46
MS.gene060803	MS.gene46885	0.812237	4.69E-51	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46885.t1	MTR_4g067290	88.112	286	20	2	19	290	12	297	2.65e-173	481
MS.gene46885.t1	MTR_4g067290	95.294	255	11	1	37	290	3	257	3.34e-173	479
MS.gene46885.t1	MTR_4g067290	94.510	255	11	2	37	290	3	255	1.49e-169	469
MS.gene46885.t1	MTR_4g067290	94.510	255	11	2	37	290	1	253	2.64e-169	469
MS.gene46885.t1	MTR_4g067290	95.359	237	10	1	55	290	1	237	2.55e-159	443
MS.gene46885.t1	MTR_4g067290	94.515	237	10	2	55	290	1	235	6.48e-156	434
MS.gene46885.t1	MTR_2g098920	64.173	254	84	5	37	286	6	256	4.00e-109	317
MS.gene46885.t1	MTR_3g006370	43.684	190	97	3	103	288	44	227	1.65e-43	148
MS.gene46885.t1	MTR_2g098880	36.923	195	105	6	101	281	53	243	1.49e-34	125
MS.gene46885.t1	MTR_2g098880	36.923	195	105	6	101	281	65	255	2.77e-34	125
MS.gene46885.t1	MTR_5g015480	42.593	108	56	3	109	212	56	161	1.90e-18	83.2
MS.gene46885.t1	MTR_1g057920	45.652	92	44	3	109	196	34	123	2.48e-16	73.9
MS.gene46885.t1	MTR_0402s0040	41.121	107	57	3	109	211	26	130	4.59e-15	75.5
MS.gene46885.t1	MTR_2g070590	38.095	105	59	3	109	209	17	119	3.82e-13	65.5
MS.gene46885.t1	MTR_6g017200	38.776	98	54	3	109	202	58	153	1.20e-12	64.7
MS.gene46885.t1	MTR_7g113010	33.835	133	62	5	109	231	457	573	5.17e-12	66.2
MS.gene46885.t1	MTR_1g070355	31.126	151	91	7	70	209	29	177	3.46e-11	63.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46885.t1	AT3G59470	59.227	233	84	4	66	290	20	249	1.44e-94	280
MS.gene46885.t1	AT3G59470	59.227	233	84	4	66	290	20	249	1.44e-94	280
MS.gene46885.t1	AT3G59470	59.227	233	84	4	66	290	32	261	2.30e-94	280
MS.gene46885.t1	AT3G07500	42.938	177	98	3	108	281	32	208	1.06e-43	149
MS.gene46885.t1	AT2G43280	38.571	210	105	5	77	281	2	192	4.76e-37	131
MS.gene46885.t1	AT4G12850	35.714	182	109	3	103	283	5	179	1.25e-31	116
MS.gene46885.t1	AT2G43280	39.877	163	86	4	124	281	2	157	1.23e-30	113
MS.gene46885.t1	AT4G38180	54.630	108	45	2	108	211	72	179	2.84e-24	102
MS.gene46885.t1	AT4G12850	40.650	123	70	2	103	224	5	125	4.26e-24	95.1
MS.gene46885.t1	AT4G12850	42.056	107	60	1	103	209	5	109	1.19e-23	94.4
MS.gene46885.t1	AT5G18960	36.184	152	71	2	66	217	14	139	9.63e-23	98.6
MS.gene46885.t1	AT5G18960	37.963	108	55	1	105	212	207	302	1.18e-19	89.4
MS.gene46885.t1	AT5G18960	36.184	152	71	2	66	217	14	139	9.63e-23	98.6
MS.gene46885.t1	AT5G18960	37.963	108	55	1	105	212	207	302	1.18e-19	89.4
MS.gene46885.t1	AT3G06250	38.793	116	59	1	106	221	187	290	7.96e-21	92.8
MS.gene46885.t1	AT3G06250	40.566	106	51	1	105	210	24	117	2.75e-20	91.3
MS.gene46885.t1	AT3G06250	38.793	116	59	1	106	221	187	290	7.96e-21	92.8
MS.gene46885.t1	AT3G06250	40.566	106	51	1	105	210	24	117	2.75e-20	91.3
MS.gene46885.t1	AT3G06250	38.793	116	59	1	106	221	187	290	7.96e-21	92.8
MS.gene46885.t1	AT3G06250	40.566	106	51	1	105	210	24	117	2.75e-20	91.3
MS.gene46885.t1	AT1G52520	39.604	101	58	1	109	209	85	182	2.67e-17	82.4
MS.gene46885.t1	AT1G80010	37.736	106	63	1	106	211	92	194	3.11e-16	79.3
MS.gene46885.t1	AT2G32250	38.182	110	62	2	104	211	33	138	5.39e-15	75.5
MS.gene46885.t1	AT2G32250	38.182	110	62	2	104	211	33	138	5.39e-15	75.5
MS.gene46885.t1	AT2G32250	38.182	110	62	2	104	211	33	138	5.44e-15	75.5
MS.gene46885.t1	AT2G32250	38.182	110	62	2	104	211	33	138	5.49e-15	75.5
MS.gene46885.t1	AT2G32250	38.182	110	62	2	104	211	33	138	5.49e-15	75.5
MS.gene46885.t1	AT2G32250	38.182	110	62	2	104	211	33	138	5.49e-15	75.5
MS.gene46885.t1	AT4G19990	28.966	145	75	2	112	242	24	154	2.79e-14	73.6
MS.gene46885.t1	AT4G19990	28.966	145	75	2	112	242	24	154	2.79e-14	73.6
MS.gene46885.t1	AT4G19990	28.966	145	75	2	112	242	38	168	2.81e-14	73.6
MS.gene46885.t1	AT4G19990	28.966	145	75	2	112	242	24	154	3.04e-14	73.2
MS.gene46885.t1	AT4G19990	28.966	145	75	2	112	242	24	154	3.04e-14	73.2
MS.gene46885.t1	AT4G19990	28.966	145	75	2	112	242	24	154	3.21e-14	73.2
MS.gene46885.t1	AT2G32250	39.000	100	55	2	114	211	2	97	5.47e-14	72.4
MS.gene46885.t1	AT2G32250	39.000	100	55	2	114	211	2	97	5.51e-14	72.4
MS.gene46885.t1	AT3G22170	28.859	149	89	4	84	217	46	192	1.41e-11	65.5
MS.gene46885.t1	AT3G22170	28.859	149	89	4	84	217	46	192	1.41e-11	65.5

Find 67 sgRNAs with CRISPR-Local

Find 98 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGAAAATTAATTCTGGTAAA+TGG	0.122359	4.3:+36984819	MS.gene46885:CDS
TTATGTTCTTCTTCTTCTTT+AGG	0.197944	4.3:-36985729	None:intergenic
TCTGTATCGTTCTATGTATC+TGG	0.244963	4.3:+36984247	MS.gene46885:CDS
CAGAAACAAGGGTTGGTTGC+AGG	0.300475	4.3:+36984780	MS.gene46885:CDS
TCTATGTATCTGGGCTTCTT+AGG	0.304144	4.3:+36984257	MS.gene46885:CDS
GAAAATTAATTCTGGTAAAT+GGG	0.333770	4.3:+36984820	MS.gene46885:CDS
ATGATGAGGAAAATTAATTC+TGG	0.337234	4.3:+36984812	MS.gene46885:CDS
ATCTCCTTTCTACTACTTCC+AGG	0.346138	4.3:-36984884	None:intergenic
GAGATTGATGACTCTGTTAA+CGG	0.380618	4.3:+36984371	MS.gene46885:CDS
AGGAAAGACGGAACTGCTAT+TGG	0.388968	4.3:+36984686	MS.gene46885:CDS
AACGTGACTCAAGATTCTTC+TGG	0.391633	4.3:+36984497	MS.gene46885:CDS
CTTGAGTCACGTTATCATCT+TGG	0.395456	4.3:-36984487	None:intergenic
TCTTCTTCCATGTATTCATC+AGG	0.412222	4.3:-36984437	None:intergenic
TCTTGGTCTTGTTTGTAAGA+TGG	0.422563	4.3:-36984470	None:intergenic
TCTACTACTTCCAGGATTCA+AGG	0.432111	4.3:-36984876	None:intergenic
GGAGATGTTTGAAATTTATC+CGG	0.433714	4.3:+36984901	MS.gene46885:CDS
TTGTTAACGCATCTTGGTCA+TGG	0.435422	4.3:+36984191	MS.gene46885:CDS
TTCTGCTGAGGAGCCTTATG+TGG	0.437415	4.3:+36984565	MS.gene46885:CDS
ATATGTTTGTTAACGCATCT+TGG	0.441858	4.3:+36984185	None:intergenic
GGCTCCTCAGCAGAAGCGTC+TGG	0.448272	4.3:-36984557	None:intergenic
ACATAGAACGATACAGATAT+AGG	0.468123	4.3:-36984241	None:intergenic
TAAGCAAGCTCTCACGATCA+AGG	0.471737	4.3:+36984666	MS.gene46885:CDS
CACACACATCCCTTGAATCC+TGG	0.472295	4.3:+36984866	MS.gene46885:CDS
TGTTAACGCATCTTGGTCAT+GGG	0.486848	4.3:+36984192	MS.gene46885:CDS
CCAACTGCTGAGATAGTTCG+CGG	0.495662	4.3:-36985578	None:intergenic
CTGTATCGTTCTATGTATCT+GGG	0.499393	4.3:+36984248	MS.gene46885:CDS
TCGAACTCTTGACCCACATA+AGG	0.503181	4.3:-36984578	None:intergenic
CTACTACTTCCAGGATTCAA+GGG	0.508347	4.3:-36984875	None:intergenic
AGAAACAAGGGTTGGTTGCA+GGG	0.508414	4.3:+36984781	MS.gene46885:CDS
GGTTATTACGAAGTTTGTAA+AGG	0.521568	4.3:+36984841	MS.gene46885:CDS
AGCAGAAGCGTCTGGTAGTG+TGG	0.524624	4.3:-36984549	None:intergenic
AATGCATACGCAGCCGAGGT+TGG	0.541461	4.3:+36984629	MS.gene46885:CDS
CGAAAAGATTGTGAGGCAAA+GGG	0.544339	4.3:+36984757	MS.gene46885:CDS
GCGAAAAGATTGTGAGGCAA+AGG	0.552809	4.3:+36984756	MS.gene46885:CDS
AGCATAATGTGGGTCTCTCA+AGG	0.559262	4.3:+36985667	MS.gene46885:CDS
GGCTCTTGTTTGCAACAAAG+AGG	0.560233	4.3:+36984712	MS.gene46885:CDS
AGTAGACAGTGTGAAGGAGA+TGG	0.569154	4.3:+36985704	MS.gene46885:CDS
GAATCCTGGAAGTAGTAGAA+AGG	0.569556	4.3:+36984880	MS.gene46885:CDS
GATGGTGCCATGGTTGTAGC+TGG	0.569629	4.3:+36984407	MS.gene46885:CDS
CCGCGAACTATCTCAGCAGT+TGG	0.570583	4.3:+36985578	MS.gene46885:CDS
TGGTAGTGTGGGAACTGCAG+TGG	0.577611	4.3:-36984537	None:intergenic
GCTCTTGTTTGCAACAAAGA+GGG	0.580043	4.3:+36984713	MS.gene46885:CDS
TGAGGCAAAGGGCAGAAACA+AGG	0.583136	4.3:+36984768	MS.gene46885:CDS
TAGCATACCTGATGAATACA+TGG	0.584054	4.3:+36984430	MS.gene46885:CDS
GCAGAAGCGTCTGGTAGTGT+GGG	0.584434	4.3:-36984548	None:intergenic
GGTAGTGTGGGAACTGCAGT+GGG	0.584997	4.3:-36984536	None:intergenic
AGACGGAACTGCTATTGGAC+GGG	0.589838	4.3:+36984691	MS.gene46885:CDS
CTCTCACGATCAAGGAAAGA+CGG	0.590017	4.3:+36984674	MS.gene46885:CDS
TAACGCATCTTGGTCATGGG+CGG	0.612194	4.3:+36984195	MS.gene46885:CDS
AAGACGGAACTGCTATTGGA+CGG	0.612304	4.3:+36984690	MS.gene46885:CDS
TCTGCTGAGGAGCCTTATGT+GGG	0.621782	4.3:+36984566	MS.gene46885:CDS
AGTGATATTTGATTATATCG+AGG	0.622955	4.3:+36985644	MS.gene46885:CDS
CAAAGGGCAGAAACAAGGGT+TGG	0.628129	4.3:+36984773	MS.gene46885:CDS
TTACAATGCATACGCAGCCG+AGG	0.629238	4.3:+36984625	MS.gene46885:CDS
TATGCTACCAGCTACAACCA+TGG	0.631572	4.3:-36984414	None:intergenic
GCGTATAGTAGACAGTGTGA+AGG	0.633138	4.3:+36985698	MS.gene46885:CDS
TACAGTAAGAGATGGTGCCA+TGG	0.635293	4.3:+36984397	MS.gene46885:CDS
TTATATCGAGGAGCATAATG+TGG	0.635828	4.3:+36985656	MS.gene46885:CDS
TATATCGAGGAGCATAATGT+GGG	0.635920	4.3:+36985657	MS.gene46885:CDS
ACTACCAGACGCTTCTGCTG+AGG	0.646967	4.3:+36984553	MS.gene46885:CDS
AACGGCGATACAGTAAGAGA+TGG	0.652494	4.3:+36984389	MS.gene46885:CDS
GAGGCAAAGGGCAGAAACAA+GGG	0.664007	4.3:+36984769	MS.gene46885:CDS
GCAGGGCAATGATTATGATG+AGG	0.664420	4.3:+36984798	MS.gene46885:CDS
ACAAGCGCGAAAAGATTGTG+AGG	0.665448	4.3:+36984750	MS.gene46885:CDS
GTGACTCAAGATTCTTCTGG+AGG	0.668755	4.3:+36984500	MS.gene46885:CDS
GCGTATGATGAATCCAACCT+CGG	0.694329	4.3:-36984642	None:intergenic
TGTGGGTCAAGAGTTCGAGT+CGG	0.698582	4.3:+36984583	MS.gene46885:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAATGAAAATTAAAAATGAA+TGG	-	chr4.3:36985202-36985221	None:intergenic	10.0%
!!	TTATAATTTATACAATTCTT+CGG	-	chr4.3:36984949-36984968	None:intergenic	10.0%
!!	GAAAATTAATTCTGGTAAAT+GGG	+	chr4.3:36984820-36984839	MS.gene46885:CDS	20.0%
!!!	AATGGATGAAGTATTATATA+AGG	-	chr4.3:36985184-36985203	None:intergenic	20.0%
!!!	TAAGTAGTTAAAGGTATTAT+AGG	+	chr4.3:36985343-36985362	MS.gene46885:intron	20.0%
!!!	TGAAGTTTTTAGGATAATAT+TGG	+	chr4.3:36985107-36985126	MS.gene46885:intron	20.0%
!!!	TTCTTGTTATGTAGTTATAT+TGG	+	chr4.3:36985377-36985396	MS.gene46885:intron	20.0%
!	AGTGATATTTGATTATATCG+AGG	+	chr4.3:36985644-36985663	MS.gene46885:CDS	25.0%
!	ATGAGATGATAAGTAGTTAA+AGG	+	chr4.3:36985334-36985353	MS.gene46885:intron	25.0%
!	ATGATGAGGAAAATTAATTC+TGG	+	chr4.3:36984812-36984831	MS.gene46885:CDS	25.0%
!	CAACTTAGAAATTACCTTTA+CGG	+	chr4.3:36985429-36985448	MS.gene46885:intron	25.0%
!	GATTCTCGTATATATTGTAA+TGG	+	chr4.3:36984995-36985014	MS.gene46885:intron	25.0%
!	GGAAAATTAATTCTGGTAAA+TGG	+	chr4.3:36984819-36984838	MS.gene46885:CDS	25.0%
!	TTATGTTCTTCTTCTTCTTT+AGG	-	chr4.3:36985732-36985751	None:intergenic	25.0%
!!	CATTTCAGAATGAAGTTTTT+AGG	+	chr4.3:36985097-36985116	MS.gene46885:intron	25.0%
!!	CTAAAAACTTCATTCTGAAA+TGG	-	chr4.3:36985099-36985118	None:intergenic	25.0%
!!	GAATGAATGGTATTAGTTTA+AGG	+	chr4.3:36985057-36985076	MS.gene46885:intron	25.0%
	AAGCATAAAGTAACAATGAC+AGG	-	chr4.3:36985027-36985046	None:intergenic	30.0%
	ACATAGAACGATACAGATAT+AGG	-	chr4.3:36984244-36984263	None:intergenic	30.0%
	AGTTAATTCTGCATTGAACT+TGG	-	chr4.3:36985259-36985278	None:intergenic	30.0%
	CTTGATAGATTGAGAATGAA+TGG	+	chr4.3:36985044-36985063	MS.gene46885:intron	30.0%
	GGTTATTACGAAGTTTGTAA+AGG	+	chr4.3:36984841-36984860	MS.gene46885:CDS	30.0%
	TTTATCGCAGAGAGATAAAT+AGG	+	chr4.3:36985307-36985326	MS.gene46885:intron	30.0%
!	CTATAAGATTTTCAGTGTTC+AGG	-	chr4.3:36984323-36984342	None:intergenic	30.0%
!	GGAGATGTTTGAAATTTATC+CGG	+	chr4.3:36984901-36984920	MS.gene46885:CDS	30.0%
	AGAAACAAACGAGGTAAGTA+GGG	-	chr4.3:36985528-36985547	None:intergenic	35.0%
	CTGTATCGTTCTATGTATCT+GGG	+	chr4.3:36984248-36984267	MS.gene46885:CDS	35.0%
	TAGAAACAAACGAGGTAAGT+AGG	-	chr4.3:36985529-36985548	None:intergenic	35.0%
	TAGCATACCTGATGAATACA+TGG	+	chr4.3:36984430-36984449	MS.gene46885:CDS	35.0%
	TCTGTATCGTTCTATGTATC+TGG	+	chr4.3:36984247-36984266	MS.gene46885:CDS	35.0%
	TCTTCTTCCATGTATTCATC+AGG	-	chr4.3:36984440-36984459	None:intergenic	35.0%
!	GAGATTGATGACTCTGTTAA+CGG	+	chr4.3:36984371-36984390	MS.gene46885:CDS	35.0%
!	TAAAAAGCATAGGAACTGAC+CGG	-	chr4.3:36984923-36984942	None:intergenic	35.0%
!	TATATCGAGGAGCATAATGT+GGG	+	chr4.3:36985657-36985676	MS.gene46885:CDS	35.0%
!	TCTTCGGTAGTAAAAAGCAT+AGG	-	chr4.3:36984933-36984952	None:intergenic	35.0%
!	TTATATCGAGGAGCATAATG+TGG	+	chr4.3:36985656-36985675	MS.gene46885:CDS	35.0%
!!	TCTTGGTCTTGTTTGTAAGA+TGG	-	chr4.3:36984473-36984492	None:intergenic	35.0%
	AAACAAACGAGGTAAGTAGG+GGG	-	chr4.3:36985526-36985545	None:intergenic	40.0%
	AACGTGACTCAAGATTCTTC+TGG	+	chr4.3:36984497-36984516	MS.gene46885:CDS	40.0%
	ATCTCCTTTCTACTACTTCC+AGG	-	chr4.3:36984887-36984906	None:intergenic	40.0%
	CGAAAAGATTGTGAGGCAAA+GGG	+	chr4.3:36984757-36984776	MS.gene46885:CDS	40.0%
	CTAAGTTGCAATTTCTCTCG+TGG	-	chr4.3:36985417-36985436	None:intergenic	40.0%
	CTACTACTTCCAGGATTCAA+GGG	-	chr4.3:36984878-36984897	None:intergenic	40.0%
	CTTGAGTCACGTTATCATCT+TGG	-	chr4.3:36984490-36984509	None:intergenic	40.0%
	GAAACAAACGAGGTAAGTAG+GGG	-	chr4.3:36985527-36985546	None:intergenic	40.0%
	GAATCCTGGAAGTAGTAGAA+AGG	+	chr4.3:36984880-36984899	MS.gene46885:CDS	40.0%
	GACTGACATAGAAACAAACG+AGG	-	chr4.3:36985537-36985556	None:intergenic	40.0%
	TCTACTACTTCCAGGATTCA+AGG	-	chr4.3:36984879-36984898	None:intergenic	40.0%
	TCTATGTATCTGGGCTTCTT+AGG	+	chr4.3:36984257-36984276	MS.gene46885:CDS	40.0%
	TGTTAACGCATCTTGGTCAT+GGG	+	chr4.3:36984192-36984211	MS.gene46885:CDS	40.0%
	TTGCAATTTCTCTCGTGGAA+AGG	-	chr4.3:36985412-36985431	None:intergenic	40.0%
	TTGTTAACGCATCTTGGTCA+TGG	+	chr4.3:36984191-36984210	MS.gene46885:CDS	40.0%
	TTTCTCTCGTGGAAAGGATA+AGG	-	chr4.3:36985406-36985425	None:intergenic	40.0%
!	GCTCTTGTTTGCAACAAAGA+GGG	+	chr4.3:36984713-36984732	MS.gene46885:CDS	40.0%
!!!	CAGATCTTTTGTTGTTGCAG+TGG	+	chr4.3:36984343-36984362	MS.gene46885:intron	40.0%
	AACAAACGAGGTAAGTAGGG+GGG	-	chr4.3:36985525-36985544	None:intergenic	45.0%
	AACGGCGATACAGTAAGAGA+TGG	+	chr4.3:36984389-36984408	MS.gene46885:CDS	45.0%
	AAGACGGAACTGCTATTGGA+CGG	+	chr4.3:36984690-36984709	MS.gene46885:CDS	45.0%
	ACAAGCGCGAAAAGATTGTG+AGG	+	chr4.3:36984750-36984769	MS.gene46885:CDS	45.0%
	AGCATAATGTGGGTCTCTCA+AGG	+	chr4.3:36985667-36985686	MS.gene46885:CDS	45.0%
	AGGAAAGACGGAACTGCTAT+TGG	+	chr4.3:36984686-36984705	MS.gene46885:CDS	45.0%
	AGTAGACAGTGTGAAGGAGA+TGG	+	chr4.3:36985704-36985723	MS.gene46885:CDS	45.0%
	CTCTCACGATCAAGGAAAGA+CGG	+	chr4.3:36984674-36984693	MS.gene46885:CDS	45.0%
	GCAGGGCAATGATTATGATG+AGG	+	chr4.3:36984798-36984817	MS.gene46885:CDS	45.0%
	GCGAAAAGATTGTGAGGCAA+AGG	+	chr4.3:36984756-36984775	MS.gene46885:CDS	45.0%
	GCGTATAGTAGACAGTGTGA+AGG	+	chr4.3:36985698-36985717	MS.gene46885:CDS	45.0%
	GCGTATGATGAATCCAACCT+CGG	-	chr4.3:36984645-36984664	None:intergenic	45.0%
	GTGACTCAAGATTCTTCTGG+AGG	+	chr4.3:36984500-36984519	MS.gene46885:CDS	45.0%
	TAAGCAAGCTCTCACGATCA+AGG	+	chr4.3:36984666-36984685	MS.gene46885:CDS	45.0%
	TATGCTACCAGCTACAACCA+TGG	-	chr4.3:36984417-36984436	None:intergenic	45.0%
	TCGAACTCTTGACCCACATA+AGG	-	chr4.3:36984581-36984600	None:intergenic	45.0%
!	ACAATCTTTTCGCGCTTGTC+AGG	-	chr4.3:36984749-36984768	None:intergenic	45.0%
!	GGCTCTTGTTTGCAACAAAG+AGG	+	chr4.3:36984712-36984731	MS.gene46885:CDS	45.0%
!	TACAGTAAGAGATGGTGCCA+TGG	+	chr4.3:36984397-36984416	MS.gene46885:CDS	45.0%
!!	ACATGCAGAAAGTGCCGTAA+AGG	-	chr4.3:36985446-36985465	None:intergenic	45.0%
!!	AGAAACAAGGGTTGGTTGCA+GGG	+	chr4.3:36984781-36984800	MS.gene46885:CDS	45.0%
	AGACGGAACTGCTATTGGAC+GGG	+	chr4.3:36984691-36984710	MS.gene46885:CDS	50.0%
	CAAAGGGCAGAAACAAGGGT+TGG	+	chr4.3:36984773-36984792	MS.gene46885:CDS	50.0%
	CACACACATCCCTTGAATCC+TGG	+	chr4.3:36984866-36984885	MS.gene46885:CDS	50.0%
	CCAACTGCTGAGATAGTTCG+CGG	-	chr4.3:36985581-36985600	None:intergenic	50.0%
	CTCTCGTGGAAAGGATAAGG+TGG	-	chr4.3:36985403-36985422	None:intergenic	50.0%
	GAGGCAAAGGGCAGAAACAA+GGG	+	chr4.3:36984769-36984788	MS.gene46885:CDS	50.0%
	TAACGCATCTTGGTCATGGG+CGG	+	chr4.3:36984195-36984214	MS.gene46885:CDS	50.0%
	TGAGGCAAAGGGCAGAAACA+AGG	+	chr4.3:36984768-36984787	MS.gene46885:CDS	50.0%
	TGTGGGTCAAGAGTTCGAGT+CGG	+	chr4.3:36984583-36984602	MS.gene46885:CDS	50.0%
	TTACAATGCATACGCAGCCG+AGG	+	chr4.3:36984625-36984644	MS.gene46885:CDS	50.0%
!	TCTGCTGAGGAGCCTTATGT+GGG	+	chr4.3:36984566-36984585	MS.gene46885:CDS	50.0%
!	TTCTGCTGAGGAGCCTTATG+TGG	+	chr4.3:36984565-36984584	MS.gene46885:CDS	50.0%
!!	CAGAAACAAGGGTTGGTTGC+AGG	+	chr4.3:36984780-36984799	MS.gene46885:CDS	50.0%
	AATGCATACGCAGCCGAGGT+TGG	+	chr4.3:36984629-36984648	MS.gene46885:CDS	55.0%
	ACTACCAGACGCTTCTGCTG+AGG	+	chr4.3:36984553-36984572	MS.gene46885:CDS	55.0%
	CCGCGAACTATCTCAGCAGT+TGG	+	chr4.3:36985578-36985597	MS.gene46885:CDS	55.0%
	GGTAGTGTGGGAACTGCAGT+GGG	-	chr4.3:36984539-36984558	None:intergenic	55.0%
!	TGGTAGTGTGGGAACTGCAG+TGG	-	chr4.3:36984540-36984559	None:intergenic	55.0%
!!	AGCAGAAGCGTCTGGTAGTG+TGG	-	chr4.3:36984552-36984571	None:intergenic	55.0%
!!	GATGGTGCCATGGTTGTAGC+TGG	+	chr4.3:36984407-36984426	MS.gene46885:CDS	55.0%
!!	GCAGAAGCGTCTGGTAGTGT+GGG	-	chr4.3:36984551-36984570	None:intergenic	55.0%
!!	GGCTCCTCAGCAGAAGCGTC+TGG	-	chr4.3:36984560-36984579	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	36984187	36985758	36984187	ID=MS.gene46885
chr4.3	mRNA	36984187	36985758	36984187	ID=MS.gene46885.t1;Parent=MS.gene46885
chr4.3	exon	36984187	36984278	36984187	ID=MS.gene46885.t1.exon1;Parent=MS.gene46885.t1
chr4.3	CDS	36984187	36984278	36984187	ID=cds.MS.gene46885.t1;Parent=MS.gene46885.t1
chr4.3	exon	36984346	36984922	36984346	ID=MS.gene46885.t1.exon2;Parent=MS.gene46885.t1
chr4.3	CDS	36984346	36984922	36984346	ID=cds.MS.gene46885.t1;Parent=MS.gene46885.t1
chr4.3	exon	36985555	36985758	36985555	ID=MS.gene46885.t1.exon3;Parent=MS.gene46885.t1
chr4.3	CDS	36985555	36985758	36985555	ID=cds.MS.gene46885.t1;Parent=MS.gene46885.t1

Gene Sequence

>MS.gene46885

ATGTTTGTTAACGCATCTTGGTCATGGGCGGCACATCTTGATTTTTCAAATATTCCTATATCTGTATCGTTCTATGTATCTGGGCTTCTTAGGTTATCGATCAACTTTGTAGACTGTTCTGTAGAATATATCACCTGAACACTGAAAATCTTATAGCAGATCTTTTGTTGTTGCAGTGGAGTTTGAGATTGATGACTCTGTTAACGGCGATACAGTAAGAGATGGTGCCATGGTTGTAGCTGGTAGCATACCTGATGAATACATGGAAGAAGAAAGTTCTGAACCATCTTACAAACAAGACCAAGATGATAACGTGACTCAAGATTCTTCTGGAGGAGTGTTAACAATACCCACTGCAGTTCCCACACTACCAGACGCTTCTGCTGAGGAGCCTTATGTGGGTCAAGAGTTCGAGTCGGAAGCAGCAGCGCATGCATTTTACAATGCATACGCAGCCGAGGTTGGATTCATCATACGCGTAAGCAAGCTCTCACGATCAAGGAAAGACGGAACTGCTATTGGACGGGCTCTTGTTTGCAACAAAGAGGGTTACAGAATGCCTGACAAGCGCGAAAAGATTGTGAGGCAAAGGGCAGAAACAAGGGTTGGTTGCAGGGCAATGATTATGATGAGGAAAATTAATTCTGGTAAATGGGTTATTACGAAGTTTGTAAAGGAGCACACACATCCCTTGAATCCTGGAAGTAGTAGAAAGGAGATGTTTGAAATTTATCCGGTCAGTTCCTATGCTTTTTACTACCGAAGAATTGTATAAATTATAATAGTTTATAAATTATAATAGTTTATTGATTCTCGTATATATTGTAATGGTTTATTCCTGTCATTGTTACTTTATGCTTGATAGATTGAGAATGAATGGTATTAGTTTAAGGATTAGATAATTTAAGACCATTTCAGAATGAAGTTTTTAGGATAATATTGGTTCTTTCACACATTTTAGCAAAATTTTGAATGAAGATTCTGTCTTTTTTCACCTTATATAATACTTCATCCATTCATTTTTAATTTTCATTTTTGTAAGAAACAAATCTTATTTATTTGTCGTTTTCCAAGTTCAATGCAGAATTAACTATTGTTTTGTCGATAATACTCTTAAGTATTTATCGCAGAGAGATAAATAGGTAGAATGAGATGATAAGTAGTTAAAGGTATTATAGGAAAATAGATCATTCTTGTTATGTAGTTATATTGGCCACCTTATCCTTTCCACGAGAGAAATTGCAACTTAGAAATTACCTTTACGGCACTTTCTGCATGTGAAGAACTTGCGTGATTTATAATTATTCTATTCTGTTCTCTTTTCAGTTTATTTTTCCCCCCTACTTACCTCGTTTGTTTCTATGTCAGTCTCAGAACGAACATGATAAAATCCGCGAACTATCTCAGCAGTTGGCAATAGAGAAAAAGCGATCTGTGACATATAAAAGACAACTTGAAGTGATATTTGATTATATCGAGGAGCATAATGTGGGTCTCTCAAGGAAAATGCAGCGTATAGTAGACAGTGTGAAGGAGATGGAACCTAAAGAAGAAGAAGAACATAATCATTGA

Protein sequence

>MS.gene46885.t1

MFVNASWSWAAHLDFSNIPISVSFYVSGLLRSFVVAVEFEIDDSVNGDTVRDGAMVVAGSIPDEYMEEESSEPSYKQDQDDNVTQDSSGGVLTIPTAVPTLPDASAEEPYVGQEFESEAAAHAFYNAYAAEVGFIIRVSKLSRSRKDGTAIGRALVCNKEGYRMPDKREKIVRQRAETRVGCRAMIMMRKINSGKWVITKFVKEHTHPLNPGSSRKEMFEIYPSQNEHDKIRELSQQLAIEKKRSVTYKRQLEVIFDYIEEHNVGLSRKMQRIVDSVKEMEPKEEEEHNH