AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene05639


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05639.t1 MTR_3g462140 98.311 296 2 1 1 296 1 293 0.0 588
MS.gene05639.t1 MTR_3g462140 28.492 179 110 4 31 208 136 297 5.13e-15 74.3
MS.gene05639.t1 MTR_7g066690 75.517 290 67 1 7 296 9 294 4.50e-163 456
MS.gene05639.t1 MTR_7g066690 29.070 172 108 4 139 297 33 203 2.09e-15 75.5
MS.gene05639.t1 MTR_4g018750 74.662 296 71 1 1 296 1 292 7.64e-163 455
MS.gene05639.t1 MTR_4g018750 28.488 172 109 4 139 297 31 201 5.81e-15 74.3
MS.gene05639.t1 MTR_4g018750 73.034 267 68 1 1 267 1 263 6.58e-141 399
MS.gene05639.t1 MTR_4g018750 28.488 172 109 4 139 297 31 201 3.95e-15 74.7
MS.gene05639.t1 MTR_3g100570 34.426 305 178 6 13 297 4 306 4.79e-55 181
MS.gene05639.t1 MTR_3g100570 27.119 177 121 2 31 207 140 308 8.60e-16 76.6
MS.gene05639.t1 MTR_3g100570 26.636 214 121 6 122 305 1 208 6.99e-11 62.4
MS.gene05639.t1 MTR_1g090330 34.114 299 160 6 16 297 15 293 3.04e-54 179
MS.gene05639.t1 MTR_1g090330 31.429 175 108 3 123 288 14 185 4.75e-15 74.7
MS.gene05639.t1 MTR_5g032420 33.654 312 180 3 13 297 4 315 1.29e-51 172
MS.gene05639.t1 MTR_5g032420 25.989 177 122 3 31 207 150 317 6.75e-11 62.4
MS.gene05639.t1 MTR_8g068890 34.641 306 178 3 13 297 4 308 3.37e-51 171
MS.gene05639.t1 MTR_8g068890 27.684 177 119 3 31 207 143 310 2.09e-14 72.8
MS.gene05639.t1 MTR_1g088995 34.343 297 165 7 10 297 28 303 1.63e-42 149
MS.gene05639.t1 MTR_8g086070 28.777 278 172 4 28 297 33 292 8.28e-28 109
MS.gene05639.t1 MTR_8g086070 28.729 181 110 4 129 300 27 197 1.63e-13 70.1
MS.gene05639.t1 MTR_8g076760 28.819 288 170 7 31 298 30 302 8.44e-26 104
MS.gene05639.t1 MTR_4g057850 27.645 293 187 6 16 298 23 300 1.38e-25 103
MS.gene05639.t1 MTR_4g057850 29.730 185 112 7 117 291 16 192 5.78e-11 62.8
MS.gene05639.t1 MTR_1g088995 33.636 220 122 6 10 226 28 226 3.98e-25 101
MS.gene05639.t1 MTR_7g084400 28.523 298 185 5 7 297 205 481 1.15e-23 100
MS.gene05639.t1 MTR_2g436930 25.574 305 194 6 19 295 19 318 8.04e-23 96.7
MS.gene05639.t1 MTR_4g119770 24.595 309 198 6 19 297 18 321 1.12e-22 96.3
MS.gene05639.t1 MTR_8g086070 30.899 178 105 2 28 204 33 193 4.46e-21 89.7
MS.gene05639.t1 MTR_8g086070 28.729 181 110 4 129 300 27 197 5.78e-14 70.1
MS.gene05639.t1 MTR_5g009500 26.364 330 183 9 6 297 27 334 2.86e-20 90.1
MS.gene05639.t1 MTR_5g009500 26.484 219 138 4 4 209 130 338 9.19e-16 77.0
MS.gene05639.t1 MTR_5g030530 31.071 280 165 10 31 295 24 290 5.72e-20 88.2
MS.gene05639.t1 MTR_5g030530 29.947 187 116 4 123 295 8 193 6.13e-16 77.0
MS.gene05639.t1 MTR_5g030530 27.230 213 136 6 4 209 96 296 3.13e-15 75.1
MS.gene05639.t1 MTR_8g066975 30.851 188 117 2 123 297 8 195 8.95e-20 87.8
MS.gene05639.t1 MTR_8g066975 29.137 278 173 7 31 295 24 290 2.61e-18 83.6
MS.gene05639.t1 MTR_8g066975 29.469 207 128 5 9 209 102 296 2.56e-17 80.9
MS.gene05639.t1 MTR_7g117030 25.378 331 214 8 8 306 10 339 3.82e-19 86.7
MS.gene05639.t1 MTR_4g119770 26.639 244 158 5 19 246 18 256 2.65e-18 83.2
MS.gene05639.t1 MTR_7g064980 26.059 307 204 7 4 297 14 310 3.71e-18 83.6
MS.gene05639.t1 MTR_8g027975 25.749 334 186 10 4 297 38 349 4.14e-18 84.0
MS.gene05639.t1 MTR_8g027975 28.571 203 120 3 19 206 158 350 4.43e-17 80.9
MS.gene05639.t1 MTR_8g027975 29.688 192 119 5 123 302 51 238 2.67e-11 63.9
MS.gene05639.t1 MTR_5g055410 26.667 285 171 7 31 297 37 301 1.14e-16 79.7
MS.gene05639.t1 MTR_7g068340 23.022 278 189 7 29 305 101 354 1.36e-16 79.7
MS.gene05639.t1 MTR_7g068340 26.702 191 115 3 19 209 191 356 7.07e-12 65.9
MS.gene05639.t1 MTR_7g068340 26.829 164 118 2 135 297 99 261 1.93e-11 64.7
MS.gene05639.t1 MTR_1g087840 24.648 284 178 8 31 297 35 299 9.57e-16 76.6
MS.gene05639.t1 MTR_1g087840 23.832 214 148 5 1 212 106 306 1.62e-12 67.4
MS.gene05639.t1 MTR_4g012850 30.460 174 107 5 31 203 126 286 1.01e-15 76.6
MS.gene05639.t1 MTR_4g012850 23.607 305 201 8 13 306 14 297 5.38e-15 74.3
MS.gene05639.t1 MTR_3g104500 22.945 292 205 5 2 282 21 303 1.60e-15 76.3
MS.gene05639.t1 MTR_3g104500 27.184 206 134 5 4 207 128 319 7.01e-13 68.6
MS.gene05639.t1 MTR_3g098460 24.917 301 193 8 8 297 198 476 1.87e-15 77.0
MS.gene05639.t1 MTR_3g025800 23.404 329 202 9 5 297 13 327 3.15e-15 75.5
MS.gene05639.t1 MTR_7g109135 24.444 225 153 5 2 224 11 220 1.09e-14 72.4
MS.gene05639.t1 MTR_7g109135 24.444 225 153 5 2 224 32 241 1.93e-14 72.0
MS.gene05639.t1 MTR_3g104600 22.611 314 203 8 11 300 31 328 2.16e-14 73.2
MS.gene05639.t1 MTR_7g109135 25.517 290 192 7 19 297 26 302 2.26e-14 72.8
MS.gene05639.t1 MTR_7g109135 24.444 225 153 5 2 224 110 319 4.85e-14 71.6
MS.gene05639.t1 MTR_1g097890 27.018 285 167 10 16 296 52 299 2.97e-14 72.4
MS.gene05639.t1 MTR_8g096050 24.415 299 199 6 7 297 219 498 5.99e-14 72.4
MS.gene05639.t1 MTR_4g088545 28.652 178 115 3 31 206 28 195 6.08e-14 70.9
MS.gene05639.t1 MTR_4g088545 24.820 278 185 6 31 295 28 294 1.22e-13 70.5
MS.gene05639.t1 MTR_4g088545 28.652 178 115 3 31 206 28 195 1.37e-13 69.3
MS.gene05639.t1 MTR_4g016730 24.579 297 186 10 15 305 89 353 4.46e-13 69.3
MS.gene05639.t1 MTR_8g092080 24.749 299 186 8 10 305 47 309 9.62e-13 68.2
MS.gene05639.t1 MTR_7g109135 25.000 172 121 4 55 224 147 312 1.10e-12 67.8
MS.gene05639.t1 MTR_2g102010 23.264 288 194 7 13 291 15 284 1.19e-12 67.4
MS.gene05639.t1 MTR_2g102010 26.437 174 116 3 31 203 126 288 5.92e-11 62.4
MS.gene05639.t1 MTR_5g073040 27.011 174 116 4 127 295 39 206 2.60e-12 66.6
MS.gene05639.t1 MTR_2g098070 29.050 179 114 4 32 210 188 353 3.87e-12 66.6
MS.gene05639.t1 MTR_2g098070 23.239 284 199 6 2 275 53 327 6.45e-12 65.9
MS.gene05639.t1 MTR_2g436930 23.581 229 144 4 93 295 5 228 6.87e-12 64.7
MS.gene05639.t1 MTR_4g114320 26.108 203 132 4 9 211 212 396 3.05e-11 63.9
MS.gene05639.t1 MTR_3g090820 26.471 204 134 5 59 246 124 327 6.03e-11 62.8
MS.gene05639.t1 MTR_4g078545 23.636 275 191 7 11 275 71 336 8.57e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05639.t1 AT5G58970 72.069 290 77 1 8 297 9 294 1.28e-160 450
MS.gene05639.t1 AT5G58970 28.922 204 127 4 9 211 114 300 7.98e-19 85.5
MS.gene05639.t1 AT3G54110 70.432 301 83 2 1 300 1 296 5.50e-155 436
MS.gene05639.t1 AT3G54110 31.053 190 112 6 31 218 134 306 8.66e-16 76.6
MS.gene05639.t1 AT5G58970 71.610 236 63 1 8 243 9 240 9.99e-125 357
MS.gene05639.t1 AT5G58970 26.531 196 128 5 116 297 9 202 6.72e-16 76.6
MS.gene05639.t1 AT1G14140 37.153 288 167 5 16 297 17 296 3.61e-60 194
MS.gene05639.t1 AT1G14140 28.191 188 121 4 4 190 107 281 2.23e-18 84.0
MS.gene05639.t1 AT1G14140 31.285 179 110 3 116 282 9 186 3.98e-16 77.8
MS.gene05639.t1 AT4G24570 33.770 305 180 4 13 297 4 306 5.77e-49 166
MS.gene05639.t1 AT2G22500 34.539 304 177 5 11 297 6 304 6.22e-49 166
MS.gene05639.t1 AT2G22500 27.684 177 119 3 31 207 139 306 9.08e-15 73.9
MS.gene05639.t1 AT4G03115 34.256 289 163 5 15 297 38 305 2.78e-46 159
MS.gene05639.t1 AT4G03115 34.256 289 163 5 15 297 70 337 6.10e-46 159
MS.gene05639.t1 AT5G09470 32.209 326 179 6 13 297 4 328 2.19e-44 154
MS.gene05639.t1 AT4G03115 35.124 242 140 4 62 297 12 242 1.71e-42 147
MS.gene05639.t1 AT4G03115 26.042 192 114 5 1 183 48 220 1.74e-11 63.5
MS.gene05639.t1 AT4G03115 35.470 234 134 4 70 297 12 234 6.13e-42 145
MS.gene05639.t1 AT4G03115 26.042 192 114 5 1 183 40 212 1.52e-11 63.5
MS.gene05639.t1 AT5G19760 28.622 283 174 5 28 301 30 293 1.03e-28 112
MS.gene05639.t1 AT5G19760 27.830 212 118 5 98 300 9 194 6.47e-14 71.2
MS.gene05639.t1 AT4G03115 33.971 209 117 4 15 223 38 225 1.51e-28 110
MS.gene05639.t1 AT4G03115 33.971 209 117 4 15 223 38 225 1.86e-28 109
MS.gene05639.t1 AT3G21390 26.885 305 188 4 21 295 25 324 3.56e-27 108
MS.gene05639.t1 AT3G21390 26.885 305 188 4 21 295 47 346 4.47e-27 108
MS.gene05639.t1 AT5G48970 25.974 308 192 6 19 295 26 328 7.65e-25 102
MS.gene05639.t1 AT5G01340 27.393 303 190 7 6 297 12 295 2.65e-24 100
MS.gene05639.t1 AT5G61810 30.272 294 178 7 8 297 58 328 3.06e-23 98.2
MS.gene05639.t1 AT5G61810 30.272 294 178 7 8 297 201 471 1.10e-22 98.2
MS.gene05639.t1 AT5G46800 31.449 283 163 9 31 295 24 293 1.40e-20 90.1
MS.gene05639.t1 AT5G46800 30.542 203 134 3 9 209 102 299 7.47e-20 88.2
MS.gene05639.t1 AT5G46800 27.807 187 109 4 130 295 15 196 2.24e-13 69.7
MS.gene05639.t1 AT5G46800 31.449 283 163 9 31 295 24 293 1.40e-20 90.1
MS.gene05639.t1 AT5G46800 30.542 203 134 3 9 209 102 299 7.47e-20 88.2
MS.gene05639.t1 AT5G46800 27.807 187 109 4 130 295 15 196 2.24e-13 69.7
MS.gene05639.t1 AT5G46800 31.449 283 163 9 31 295 24 293 1.40e-20 90.1
MS.gene05639.t1 AT5G46800 30.542 203 134 3 9 209 102 299 7.47e-20 88.2
MS.gene05639.t1 AT5G46800 27.807 187 109 4 130 295 15 196 2.24e-13 69.7
MS.gene05639.t1 AT5G66380 29.236 301 181 10 18 298 9 297 6.11e-20 88.6
MS.gene05639.t1 AT5G66380 27.876 226 133 8 5 217 100 308 3.43e-11 63.5
MS.gene05639.t1 AT5G48970 25.191 262 162 5 63 295 1 257 1.39e-19 86.7
MS.gene05639.t1 AT1G79900 26.568 271 168 6 31 295 32 277 1.25e-18 84.7
MS.gene05639.t1 AT5G56450 25.436 287 190 6 11 282 30 307 2.68e-18 84.3
MS.gene05639.t1 AT1G25380 26.117 291 172 8 31 300 37 305 2.93e-18 84.3
MS.gene05639.t1 AT1G25380 26.117 291 172 8 31 300 37 305 2.93e-18 84.3
MS.gene05639.t1 AT3G53940 26.073 303 199 7 8 297 66 356 3.04e-18 84.3
MS.gene05639.t1 AT5G07320 26.936 297 186 6 7 297 201 472 3.17e-18 85.1
MS.gene05639.t1 AT1G34065 25.962 312 178 10 5 306 63 331 2.26e-17 81.6
MS.gene05639.t1 AT3G51870 25.794 252 168 6 29 279 105 338 2.31e-17 82.0
MS.gene05639.t1 AT1G34065 25.962 312 178 10 5 306 70 338 2.50e-17 81.6
MS.gene05639.t1 AT2G47490 27.562 283 183 8 31 302 33 304 2.86e-17 81.3
MS.gene05639.t1 AT4G01100 25.705 319 191 8 10 297 37 340 6.81e-17 80.5
MS.gene05639.t1 AT4G01100 28.155 206 123 3 19 209 149 344 3.34e-15 75.5
MS.gene05639.t1 AT4G01100 26.846 298 172 8 31 297 8 290 2.44e-16 78.2
MS.gene05639.t1 AT4G01100 28.155 206 123 3 19 209 99 294 1.36e-15 76.3
MS.gene05639.t1 AT2G37890 28.197 305 187 12 13 299 43 333 2.71e-16 78.6
MS.gene05639.t1 AT5G01500 25.692 253 169 6 28 279 132 366 3.44e-16 79.0
MS.gene05639.t1 AT4G01100 25.301 332 190 9 10 297 37 354 1.33e-15 77.0
MS.gene05639.t1 AT4G01100 28.155 206 123 3 19 209 163 358 1.77e-15 76.6
MS.gene05639.t1 AT5G51050 25.667 300 191 7 7 297 215 491 2.42e-14 73.6
MS.gene05639.t1 AT2G26360 25.368 272 170 7 13 280 113 355 1.11e-13 71.2
MS.gene05639.t1 AT4G11440 24.437 311 190 7 3 295 314 597 1.48e-12 68.6
MS.gene05639.t1 AT4G11440 24.437 311 190 7 3 295 314 597 1.48e-12 68.6
MS.gene05639.t1 AT2G17270 26.154 260 149 7 31 278 38 266 1.53e-12 67.4
MS.gene05639.t1 AT1G14560 28.910 211 128 6 15 213 25 225 1.73e-12 66.2
MS.gene05639.t1 AT5G13490 25.260 289 188 8 10 283 83 358 2.31e-12 67.4
MS.gene05639.t1 AT5G13490 29.143 175 112 5 32 206 210 372 1.38e-11 65.1
MS.gene05639.t1 AT5G13490 25.260 289 188 8 10 283 83 358 2.31e-12 67.4
MS.gene05639.t1 AT5G13490 29.143 175 112 5 32 206 210 372 1.38e-11 65.1
MS.gene05639.t1 AT3G55640 24.756 307 206 8 7 300 30 324 3.26e-12 66.6
MS.gene05639.t1 AT3G55640 24.756 307 206 8 7 300 30 324 3.26e-12 66.6
MS.gene05639.t1 AT4G39460 26.280 293 169 10 10 295 53 305 3.50e-12 66.6
MS.gene05639.t1 AT4G39460 26.280 293 169 10 10 295 53 305 3.50e-12 66.6
MS.gene05639.t1 AT4G39460 26.280 293 169 10 10 295 53 305 3.50e-12 66.6
MS.gene05639.t1 AT1G14560 28.910 211 128 6 15 213 123 323 4.41e-12 66.2
MS.gene05639.t1 AT4G27940 23.034 356 216 9 7 306 57 410 4.86e-12 66.6
MS.gene05639.t1 AT5G15640 25.085 295 170 11 31 297 37 308 6.27e-12 65.5
MS.gene05639.t1 AT3G55640 26.596 188 128 2 123 300 38 225 6.43e-12 65.1
MS.gene05639.t1 AT3G55640 26.596 188 128 2 123 300 38 225 6.43e-12 65.1
MS.gene05639.t1 AT5G15640 25.085 295 170 11 31 297 44 315 7.45e-12 65.5
MS.gene05639.t1 AT1G14560 30.270 185 108 5 15 187 123 298 8.90e-12 65.1
MS.gene05639.t1 AT5G17400 26.241 282 183 7 11 279 10 279 1.07e-11 64.7
MS.gene05639.t1 AT5G17400 26.341 205 130 5 11 211 115 302 7.08e-11 62.4
MS.gene05639.t1 AT4G28390 23.183 289 203 6 4 282 72 351 1.89e-11 64.7
MS.gene05639.t1 AT4G28390 23.183 289 203 6 4 282 72 351 1.89e-11 64.7
MS.gene05639.t1 AT2G33820 25.517 290 190 9 31 306 34 311 2.05e-11 63.9
MS.gene05639.t1 AT1G07030 24.157 178 128 3 119 295 36 207 2.96e-11 63.5
MS.gene05639.t1 AT4G26180 21.683 309 209 9 11 302 17 309 4.48e-11 63.2
MS.gene05639.t1 AT2G33820 26.728 217 137 7 31 236 34 239 7.91e-11 62.0
MS.gene05639.t1 AT1G74240 23.051 295 185 8 13 279 34 314 9.27e-11 62.4

Find 78 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAAGGGGTTTCTTCTTTA+TGG 0.121592 3.2:+53182203 MS.gene05639:CDS
CCAAGTAAACCTTTATATTT+AGG 0.181790 3.2:-53182157 None:intergenic
AAAGGCTTCCTTCCAAATTT+TGG 0.202231 3.2:+53185006 MS.gene05639:CDS
GGGGCCTTGTGGACTGGACT+TGG 0.217757 3.2:+53183803 MS.gene05639:CDS
ATTGCATTTCGTGCTATATT+AGG 0.233816 3.2:-53183827 None:intergenic
TGGAAGGAAGCCTTTGTAAA+AGG 0.271542 3.2:-53184998 None:intergenic
ACTCCTACTCGACCAAAATT+TGG 0.275793 3.2:-53185018 None:intergenic
CCTAAATATAAAGGTTTACT+TGG 0.296459 3.2:+53182157 MS.gene05639:CDS
ACGGGTTTGCCTAAATATAA+AGG 0.304831 3.2:+53182148 MS.gene05639:CDS
GGGGTACCCAAGCGCTATTC+TGG 0.328763 3.2:+53183624 MS.gene05639:CDS
CTTGTTGGTGCTGCATTTGT+TGG 0.329452 3.2:+53182739 MS.gene05639:CDS
TTATGGAAAGGCATTGTTCC+TGG 0.330400 3.2:+53182220 MS.gene05639:CDS
AGGATTGAGCGAAGGTAATA+TGG 0.337373 3.2:-53181915 None:intergenic
GGGTTAGGGGCCTTGTGGAC+TGG 0.357450 3.2:+53183797 MS.gene05639:CDS
TTTGAAAATTCCAGGATTCA+TGG 0.362691 3.2:+53184002 MS.gene05639:CDS
TCTGAAGGCCAGTTGCCATC+TGG 0.374516 3.2:+53183603 MS.gene05639:CDS
ATTACTAACAGGATCATATA+AGG 0.379377 3.2:-53182281 None:intergenic
GGGCCTTGTGGACTGGACTT+GGG 0.384491 3.2:+53183804 MS.gene05639:CDS
AAGTCTGACTTGTCTCAATA+TGG 0.386405 3.2:-53183667 None:intergenic
ATACTTGCTGCTCTTCTAAC+TGG 0.387241 3.2:+53182784 MS.gene05639:CDS
TGAACTTGTGGTAGGTGCTT+TGG 0.389892 3.2:+53183533 MS.gene05639:intron
ATGAGTATCTTACTTGTTCA+AGG 0.396662 3.2:-53185065 None:intergenic
ATGTTGAACTAGGAAGGGTT+AGG 0.409375 3.2:+53183782 MS.gene05639:intron
CGACAGATCTAGTCAAAGTT+AGG 0.412037 3.2:+53183574 MS.gene05639:CDS
TAGTTATGATCGAGTGAAAC+AGG 0.420473 3.2:+53183871 MS.gene05639:CDS
TGGGTACCCCAGATGGCAAC+TGG 0.424255 3.2:-53183611 None:intergenic
AAAACTATTGCTAGAGAAGA+AGG 0.425811 3.2:+53182187 MS.gene05639:CDS
TTGTACTATTCCGTTGGATA+CGG 0.428063 3.2:+53182066 MS.gene05639:CDS
CTGAAGGCCAGTTGCCATCT+GGG 0.437468 3.2:+53183604 MS.gene05639:CDS
ACTCACCTCCTAGCTGGCCT+AGG 0.439987 3.2:+53184036 MS.gene05639:CDS
GCCTTTACTCACCTCCTAGC+TGG 0.453112 3.2:+53184030 MS.gene05639:CDS
CTCCTAGCTGGCCTAGGAGC+AGG 0.459244 3.2:+53184042 MS.gene05639:CDS
TTACACCGTCAGTGTTTGTA+TGG 0.460620 3.2:+53182244 MS.gene05639:CDS
GATGATGATGATGGTGGAAC+GGG 0.463988 3.2:+53182130 MS.gene05639:CDS
TGTTGAACTAGGAAGGGTTA+GGG 0.466885 3.2:+53183783 MS.gene05639:intron
CCAGGTAAAATCCAGGATGA+TGG 0.473168 3.2:+53184518 MS.gene05639:intron
GTAGAACCTACCACATCAAC+AGG 0.479656 3.2:-53184090 None:intergenic
AAGGCATTGTCCATGAATCC+TGG 0.493052 3.2:-53184012 None:intergenic
TGAGCGAAGGTAATATGGTT+GGG 0.504822 3.2:-53181910 None:intergenic
GGCGAAAGCGCTGCAGAGGA+AGG 0.506136 3.2:-53181935 None:intergenic
CAGGTAAAATCCAGGATGAT+GGG 0.507381 3.2:+53184519 MS.gene05639:intron
AACTATTGCTAGAGAAGAAG+GGG 0.515115 3.2:+53182189 MS.gene05639:CDS
TTGAGCGAAGGTAATATGGT+TGG 0.517005 3.2:-53181911 None:intergenic
GCCAGCTAGGAGGTGAGTAA+AGG 0.521462 3.2:-53184031 None:intergenic
CACCGTCAGTGTTTGTATGG+TGG 0.524296 3.2:+53182247 MS.gene05639:CDS
CTCACCTTCGCCGTATCCAA+CGG 0.528615 3.2:-53182076 None:intergenic
GGGGTTTCTTCTTTATGGAA+AGG 0.530881 3.2:+53182208 MS.gene05639:CDS
AAGCGGCGAAAGCGCTGCAG+AGG 0.545162 3.2:-53181939 None:intergenic
TCTTAAGACTTTGTTCAATG+AGG 0.551405 3.2:+53184575 MS.gene05639:CDS
AAACTATTGCTAGAGAAGAA+GGG 0.553807 3.2:+53182188 MS.gene05639:CDS
TAGCGCTTGGGTACCCCAGA+TGG 0.554856 3.2:-53183618 None:intergenic
CATGGCACCAGAATAGCGCT+TGG 0.555660 3.2:-53183631 None:intergenic
TATGGTAGAATATGCATCCA+TGG 0.557398 3.2:-53183649 None:intergenic
AGACTTCAACTACAAAAGAA+AGG 0.558997 3.2:+53182097 MS.gene05639:CDS
TGAGTATCTTACTTGTTCAA+GGG 0.564723 3.2:-53185064 None:intergenic
GACCTGCTCCTAGGCCAGCT+AGG 0.575634 3.2:-53184044 None:intergenic
ATGGCACCAGAATAGCGCTT+GGG 0.575674 3.2:-53183630 None:intergenic
TATCGGTTCTCCTGTTGATG+TGG 0.579989 3.2:+53184080 MS.gene05639:CDS
AAACACTGACGGTGTAAACC+AGG 0.582087 3.2:-53182238 None:intergenic
AGGAAGGGTTAGGGGCCTTG+TGG 0.584729 3.2:+53183792 MS.gene05639:intron
CAAGCGCTATTCTGGTGCCA+TGG 0.590918 3.2:+53183632 MS.gene05639:CDS
AAAGTTAGGCTTCAATCTGA+AGG 0.600171 3.2:+53183588 MS.gene05639:CDS
TTTCGCCGCTTGTTTCGCTG+AGG 0.600906 3.2:+53181951 MS.gene05639:CDS
GCAAGTATCATATGATACAA+AGG 0.606842 3.2:-53182769 None:intergenic
TGATGATGATGATGGTGGAA+CGG 0.607320 3.2:+53182129 MS.gene05639:CDS
CTAACTTTGACTAGATCTGT+CGG 0.618713 3.2:-53183573 None:intergenic
AGGCCCAAGTCCAGTCCACA+AGG 0.619944 3.2:-53183807 None:intergenic
AGGTAAAATCCAGGATGATG+GGG 0.619947 3.2:+53184520 MS.gene05639:intron
TATTCCGTTGGATACGGCGA+AGG 0.622758 3.2:+53182072 MS.gene05639:CDS
CTACTCGACCAAAATTTGGA+AGG 0.622994 3.2:-53185014 None:intergenic
AACCACCATACAAACACTGA+CGG 0.633993 3.2:-53182249 None:intergenic
GGTAAAATCCAGGATGATGG+GGG 0.637020 3.2:+53184521 MS.gene05639:intron
AAGAACCTCAGCGAAACAAG+CGG 0.638454 3.2:-53181956 None:intergenic
GTTGAACTAGGAAGGGTTAG+GGG 0.655659 3.2:+53183784 MS.gene05639:intron
GCAGAGGAAGGATTGAGCGA+AGG 0.655916 3.2:-53181923 None:intergenic
TGAAGGCCAGTTGCCATCTG+GGG 0.659322 3.2:+53183605 MS.gene05639:CDS
CTGCTCCTAGGCCAGCTAGG+AGG 0.661972 3.2:-53184041 None:intergenic
CTTCAACTACAAAAGAAAGG+TGG 0.679200 3.2:+53182100 MS.gene05639:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATCATTTGATTTAAATTT+AGG + chr3.2:53183239-53183258 MS.gene05639:intron 10.0%
!! AACATGATAGTATTATAAAA+GGG - chr3.2:53182315-53182334 None:intergenic 15.0%
!! TAACATGATAGTATTATAAA+AGG - chr3.2:53182316-53182335 None:intergenic 15.0%
!! TATAATATCGAAGTAAAAAT+GGG + chr3.2:53182983-53183002 MS.gene05639:intron 15.0%
!!! CTGTTTTTGTATAATTTATA+AGG + chr3.2:53182429-53182448 MS.gene05639:intron 15.0%
!!! TTTATTTTAACCCTTTATAT+TGG + chr3.2:53184717-53184736 MS.gene05639:intron 15.0%
!! AAATAATAATTGCTTGATGT+AGG + chr3.2:53183213-53183232 MS.gene05639:intron 20.0%
!! AAATTTAATGCTAACAATGT+TGG + chr3.2:53184284-53184303 MS.gene05639:intron 20.0%
!! AATATTATTATCTTGTGTTC+TGG - chr3.2:53183034-53183053 None:intergenic 20.0%
!! AATGAGAAGCAATAAAAAAT+GGG - chr3.2:53182830-53182849 None:intergenic 20.0%
!! AATTCATAAGAGAATTAGTT+AGG + chr3.2:53183325-53183344 MS.gene05639:intron 20.0%
!! ATAATATCGAAGTAAAAATG+GGG + chr3.2:53182984-53183003 MS.gene05639:intron 20.0%
!! ATATAACCTATGCTATAAAA+TGG - chr3.2:53183491-53183510 None:intergenic 20.0%
!! ATTTCTAATGTCCTAATTAA+AGG + chr3.2:53185143-53185162 MS.gene05639:intron 20.0%
!! GAGACATAATATACATATAA+AGG - chr3.2:53183749-53183768 None:intergenic 20.0%
!! GTATAATATCGAAGTAAAAA+TGG + chr3.2:53182982-53183001 MS.gene05639:intron 20.0%
!! TATAACCTATGCTATAAAAT+GGG - chr3.2:53183490-53183509 None:intergenic 20.0%
!! TTGTATATATATGTTGAACT+AGG + chr3.2:53183772-53183791 MS.gene05639:intron 20.0%
!! TTTAATTAGGACATTAGAAA+TGG - chr3.2:53185144-53185163 None:intergenic 20.0%
!!! AGTTTATAAAGTGATTTTAC+CGG - chr3.2:53185104-53185123 None:intergenic 20.0%
!!! ATACTATCATGTTATTGATT+TGG + chr3.2:53182322-53182341 MS.gene05639:intron 20.0%
!!! ATGAATATCTCATTTTATGA+GGG + chr3.2:53184769-53184788 MS.gene05639:intron 20.0%
!!! ATTAGTTAGGTTTCTATTTT+TGG + chr3.2:53183338-53183357 MS.gene05639:intron 20.0%
!!! ATTTTCAAAATACATGTTTG+TGG - chr3.2:53184363-53184382 None:intergenic 20.0%
!!! CATAAAGTTTATCATTGTTT+TGG + chr3.2:53184932-53184951 MS.gene05639:intron 20.0%
!!! TTTCATTTTCCATGAAAATT+GGG - chr3.2:53183073-53183092 None:intergenic 20.0%
!!! TTTTCAAAATACATGTTTGT+GGG - chr3.2:53184362-53184381 None:intergenic 20.0%
!!! TTTTCATTTTCCATGAAAAT+TGG - chr3.2:53183074-53183093 None:intergenic 20.0%
! AAACAGGTAATCACATTATA+AGG + chr3.2:53183887-53183906 MS.gene05639:intron 25.0%
! AACAATGACAAAATCAAACA+AGG - chr3.2:53184615-53184634 None:intergenic 25.0%
! AACAGGTAATCACATTATAA+GGG + chr3.2:53183888-53183907 MS.gene05639:intron 25.0%
! AATCAGAACATCCAATATAA+AGG - chr3.2:53184731-53184750 None:intergenic 25.0%
! AGAACTTATGAAAACATCTT+AGG - chr3.2:53182586-53182605 None:intergenic 25.0%
! AGACTGAAGTTAAAGAAAAT+AGG - chr3.2:53184131-53184150 None:intergenic 25.0%
! ATAAATCTTTCAACTCTCAT+AGG - chr3.2:53184661-53184680 None:intergenic 25.0%
! ATAACCTATGCTATAAAATG+GGG - chr3.2:53183489-53183508 None:intergenic 25.0%
! ATATATATGTTGAACTAGGA+AGG + chr3.2:53183776-53183795 MS.gene05639:intron 25.0%
! ATCAGAACATCCAATATAAA+GGG - chr3.2:53184730-53184749 None:intergenic 25.0%
! ATGTTATGGTAGAAACATAA+AGG + chr3.2:53182856-53182875 MS.gene05639:intron 25.0%
! ATTACTAACAGGATCATATA+AGG - chr3.2:53182284-53182303 None:intergenic 25.0%
! ATTCTAGTGTTACATTATCA+AGG - chr3.2:53183179-53183198 None:intergenic 25.0%
! CAATGAGAAGCAATAAAAAA+TGG - chr3.2:53182831-53182850 None:intergenic 25.0%
! CATTATAAGGGATTCTAAAT+TGG + chr3.2:53183900-53183919 MS.gene05639:intron 25.0%
! CCAAGTAAACCTTTATATTT+AGG - chr3.2:53182160-53182179 None:intergenic 25.0%
! CCTAAATATAAAGGTTTACT+TGG + chr3.2:53182157-53182176 MS.gene05639:CDS 25.0%
! CTAATAGAAACATTCTTTCA+AGG - chr3.2:53183136-53183155 None:intergenic 25.0%
! GATGTAGATAGTTACAAAAT+AGG + chr3.2:53183263-53183282 MS.gene05639:intron 25.0%
! TACCTGGAAAATTATAAACA+TGG - chr3.2:53184505-53184524 None:intergenic 25.0%
! TATATATGTTGAACTAGGAA+GGG + chr3.2:53183777-53183796 MS.gene05639:intron 25.0%
! TGAAGTTAAAGAAAATAGGA+GGG - chr3.2:53184127-53184146 None:intergenic 25.0%
! TGTTATGGTAGAAACATAAA+GGG + chr3.2:53182857-53182876 MS.gene05639:intron 25.0%
! TTACAAAATAGGTTGTAGAT+TGG + chr3.2:53183274-53183293 MS.gene05639:intron 25.0%
! TTCAATGCTTAAGTTAGTAA+GGG + chr3.2:53182960-53182979 MS.gene05639:intron 25.0%
! TTCTCATTGCTTAAATGTTA+TGG + chr3.2:53182842-53182861 MS.gene05639:intron 25.0%
! TTGCAAGATTCATTATAGTA+CGG + chr3.2:53184392-53184411 MS.gene05639:intron 25.0%
! TTGCATTTCCTTTCTAAATA+AGG + chr3.2:53183386-53183405 MS.gene05639:intron 25.0%
! TTTCAATGCTTAAGTTAGTA+AGG + chr3.2:53182959-53182978 MS.gene05639:intron 25.0%
!! AATAAGGCGCTTATATAAAA+AGG - chr3.2:53182350-53182369 None:intergenic 25.0%
!! ATCATTCTCCTTATTTAGAA+AGG - chr3.2:53183397-53183416 None:intergenic 25.0%
!! ATCCATGTTTATAATTTTCC+AGG + chr3.2:53184500-53184519 MS.gene05639:intron 25.0%
!! CATAAAGGGAGATTTTTATA+TGG + chr3.2:53182871-53182890 MS.gene05639:intron 25.0%
!! CATGCTTAATTTCTGAAAAT+TGG + chr3.2:53185276-53185295 MS.gene05639:intron 25.0%
!! GATGAATATCTCATTTTATG+AGG + chr3.2:53184768-53184787 MS.gene05639:intron 25.0%
!! TGAATATCTCATTTTATGAG+GGG + chr3.2:53184770-53184789 MS.gene05639:intron 25.0%
!! TTCATTTTCCATGAAAATTG+GGG - chr3.2:53183072-53183091 None:intergenic 25.0%
!!! GATTCATTTTTTTGAACTTG+TGG + chr3.2:53183521-53183540 MS.gene05639:intron 25.0%
!!! TAAAATAAGTTGATCCAAAC+AGG + chr3.2:53182645-53182664 MS.gene05639:intron 25.0%
AAAACTATTGCTAGAGAAGA+AGG + chr3.2:53182187-53182206 MS.gene05639:CDS 30.0%
AAACTATTGCTAGAGAAGAA+GGG + chr3.2:53182188-53182207 MS.gene05639:CDS 30.0%
ACTCATAAAATTCGCAATTC+CGG + chr3.2:53185082-53185101 MS.gene05639:intron 30.0%
AGACTTCAACTACAAAAGAA+AGG + chr3.2:53182097-53182116 MS.gene05639:CDS 30.0%
AGATTGGAAAGAAAGGAAAT+GGG + chr3.2:53183290-53183309 MS.gene05639:intron 30.0%
ATGAGTATCTTACTTGTTCA+AGG - chr3.2:53185068-53185087 None:intergenic 30.0%
ATTGCATTTCGTGCTATATT+AGG - chr3.2:53183830-53183849 None:intergenic 30.0%
CATTTCATGTAATGCAACAT+TGG - chr3.2:53183939-53183958 None:intergenic 30.0%
CTGAAGTTAAAGAAAATAGG+AGG - chr3.2:53184128-53184147 None:intergenic 30.0%
CTGTCTCATTTCATTATTGA+AGG - chr3.2:53184194-53184213 None:intergenic 30.0%
GACATTAGAAATGGATAACA+AGG - chr3.2:53185135-53185154 None:intergenic 30.0%
GCAAGTATCATATGATACAA+AGG - chr3.2:53182772-53182791 None:intergenic 30.0%
GTACTAAAAGCTGCAAAATA+AGG - chr3.2:53182366-53182385 None:intergenic 30.0%
TAGATTGGAAAGAAAGGAAA+TGG + chr3.2:53183289-53183308 MS.gene05639:intron 30.0%
TCTTAAGACTTTGTTCAATG+AGG + chr3.2:53184575-53184594 MS.gene05639:CDS 30.0%
TGAAATGAGACAGAAAAAGA+AGG + chr3.2:53184201-53184220 MS.gene05639:intron 30.0%
TGAGTATCTTACTTGTTCAA+GGG - chr3.2:53185067-53185086 None:intergenic 30.0%
TGCAAGATTCATTATAGTAC+GGG + chr3.2:53184393-53184412 MS.gene05639:intron 30.0%
TGCTTGTTTAATTCATAGTG+TGG + chr3.2:53183417-53183436 MS.gene05639:intron 30.0%
TTATTATCTTGTGTTCTGGT+CGG - chr3.2:53183030-53183049 None:intergenic 30.0%
TTTGAAAATTCCAGGATTCA+TGG + chr3.2:53184002-53184021 MS.gene05639:CDS 30.0%
! AAATGTATTGCAGGGATTTT+TGG + chr3.2:53184975-53184994 MS.gene05639:intron 30.0%
! TAATTTTCCAGGTAAAATCC+AGG + chr3.2:53184511-53184530 MS.gene05639:intron 30.0%
! TCATTTTCCATGAAAATTGG+GGG - chr3.2:53183071-53183090 None:intergenic 30.0%
! TTCTTGGATTGGAGTAATTT+CGG + chr3.2:53182668-53182687 MS.gene05639:intron 30.0%
!! AGCATTGAAATTACTTTTGC+AGG - chr3.2:53182949-53182968 None:intergenic 30.0%
!! GGGAAGTATTAATTACTAAC+AGG - chr3.2:53182295-53182314 None:intergenic 30.0%
!!! CATTTTTTTGAACTTGTGGT+AGG + chr3.2:53183525-53183544 MS.gene05639:intron 30.0%
!!! GGTCTTTTTGCTGTTTTTAT+CGG + chr3.2:53184063-53184082 MS.gene05639:CDS 30.0%
AAAGTTAGGCTTCAATCTGA+AGG + chr3.2:53183588-53183607 MS.gene05639:CDS 35.0%
AACTATTGCTAGAGAAGAAG+GGG + chr3.2:53182189-53182208 MS.gene05639:CDS 35.0%
AAGAAGGGGTTTCTTCTTTA+TGG + chr3.2:53182203-53182222 MS.gene05639:CDS 35.0%
AAGTTAGAAGCTGAAGCATA+CGG - chr3.2:53185304-53185323 None:intergenic 35.0%
ACGGGTTTGCCTAAATATAA+AGG + chr3.2:53182148-53182167 MS.gene05639:CDS 35.0%
ACTTGAGAACAGAGCAATAA+AGG - chr3.2:53184852-53184871 None:intergenic 35.0%
AGAAATTAAGCATGCATCAG+CGG - chr3.2:53185270-53185289 None:intergenic 35.0%
AGGTTGTAGATTGGAAAGAA+AGG + chr3.2:53183283-53183302 MS.gene05639:intron 35.0%
AGTGGGTCAAACCTTTAATT+AGG - chr3.2:53185157-53185176 None:intergenic 35.0%
ATATCGAAGTAAAAATGGGG+TGG + chr3.2:53182987-53183006 MS.gene05639:intron 35.0%
CACTAGAAGTGACATATCTT+TGG + chr3.2:53184228-53184247 MS.gene05639:intron 35.0%
CTAACTTTGACTAGATCTGT+CGG - chr3.2:53183576-53183595 None:intergenic 35.0%
CTTCAACTACAAAAGAAAGG+TGG + chr3.2:53182100-53182119 MS.gene05639:CDS 35.0%
GAGAACACAGTTAAACAGTT+TGG - chr3.2:53184340-53184359 None:intergenic 35.0%
GATGTGAGAAATGTATTGCA+GGG + chr3.2:53184967-53184986 MS.gene05639:intron 35.0%
GCAAGATTCATTATAGTACG+GGG + chr3.2:53184394-53184413 MS.gene05639:intron 35.0%
TAGTTATGATCGAGTGAAAC+AGG + chr3.2:53183871-53183890 MS.gene05639:CDS 35.0%
TATCAAACAAACCAGATAGC+AGG - chr3.2:53184902-53184921 None:intergenic 35.0%
TATCGAAGTAAAAATGGGGT+GGG + chr3.2:53182988-53183007 MS.gene05639:intron 35.0%
TATGGTAGAATATGCATCCA+TGG - chr3.2:53183652-53183671 None:intergenic 35.0%
TGATGTGAGAAATGTATTGC+AGG + chr3.2:53184966-53184985 MS.gene05639:intron 35.0%
TGTTCTGGTCGGAATATAAA+TGG - chr3.2:53183019-53183038 None:intergenic 35.0%
TTGTACTATTCCGTTGGATA+CGG + chr3.2:53182066-53182085 MS.gene05639:CDS 35.0%
! AAAGGCTTCCTTCCAAATTT+TGG + chr3.2:53185006-53185025 MS.gene05639:CDS 35.0%
! AAGTCTGACTTGTCTCAATA+TGG - chr3.2:53183670-53183689 None:intergenic 35.0%
! AATGCTAACAATGTTGGTGA+TGG + chr3.2:53184290-53184309 MS.gene05639:intron 35.0%
! CAGGTGAAAACTTTTCTTGT+TGG + chr3.2:53182724-53182743 MS.gene05639:intron 35.0%
! CTGTTTTCATAAGCTATCAC+GGG + chr3.2:53182520-53182539 MS.gene05639:intron 35.0%
! TCATTTTATGAGGGGACATT+GGG + chr3.2:53184778-53184797 MS.gene05639:intron 35.0%
! TGGTCTTTTGGACAAACTTT+TGG + chr3.2:53184248-53184267 MS.gene05639:intron 35.0%
! TGTTTTCATAAGCTATCACG+GGG + chr3.2:53182521-53182540 MS.gene05639:intron 35.0%
!! ACGTTCAATTGGTCGATTTT+TGG + chr3.2:53184426-53184445 MS.gene05639:intron 35.0%
!! CAGACGATTTTGAAAATTCC+AGG + chr3.2:53183994-53184013 MS.gene05639:intron 35.0%
!! GCTGTTTTCATAAGCTATCA+CGG + chr3.2:53182519-53182538 MS.gene05639:intron 35.0%
!! GTGACATATCTTTGGTCTTT+TGG + chr3.2:53184236-53184255 MS.gene05639:intron 35.0%
!! TATGAGTTGTGTTTTTCGAC+AGG + chr3.2:53182705-53182724 MS.gene05639:intron 35.0%
!!! GGATTTTTGGCCTTTTACAA+AGG + chr3.2:53184988-53185007 MS.gene05639:CDS 35.0%
!!! GTAGTTTTGTACTATTCCGT+TGG + chr3.2:53182060-53182079 MS.gene05639:intron 35.0%
AACAGTGTCACAAGTGCTTA+TGG + chr3.2:53182610-53182629 MS.gene05639:intron 40.0%
AACCACCATACAAACACTGA+CGG - chr3.2:53182252-53182271 None:intergenic 40.0%
AATGATCTTGGATTCTCTGG+TGG + chr3.2:53182915-53182934 MS.gene05639:intron 40.0%
ACCAGAGAATCCAAGATCAT+TGG - chr3.2:53182916-53182935 None:intergenic 40.0%
ACTCCTACTCGACCAAAATT+TGG - chr3.2:53185021-53185040 None:intergenic 40.0%
ACTGTAAGCTCCAATGATCT+TGG + chr3.2:53182903-53182922 MS.gene05639:intron 40.0%
AGGATTGAGCGAAGGTAATA+TGG - chr3.2:53181918-53181937 None:intergenic 40.0%
AGGTAAAATCCAGGATGATG+GGG + chr3.2:53184520-53184539 MS.gene05639:intron 40.0%
AGTTGATCCAAACAGGTTCT+TGG + chr3.2:53182652-53182671 MS.gene05639:intron 40.0%
ATCCAAACAGGTTCTTGGAT+TGG + chr3.2:53182657-53182676 MS.gene05639:intron 40.0%
ATGATCTTGGATTCTCTGGT+GGG + chr3.2:53182916-53182935 MS.gene05639:intron 40.0%
ATGTTGAACTAGGAAGGGTT+AGG + chr3.2:53183782-53183801 MS.gene05639:intron 40.0%
CAGGTAAAATCCAGGATGAT+GGG + chr3.2:53184519-53184538 MS.gene05639:intron 40.0%
CGACAGATCTAGTCAAAGTT+AGG + chr3.2:53183574-53183593 MS.gene05639:CDS 40.0%
CTACTCGACCAAAATTTGGA+AGG - chr3.2:53185017-53185036 None:intergenic 40.0%
CTATGCTATAAAATGGGGAC+TGG - chr3.2:53183484-53183503 None:intergenic 40.0%
GGGGTTTCTTCTTTATGGAA+AGG + chr3.2:53182208-53182227 MS.gene05639:CDS 40.0%
GGTACAGGAAAACGTTCAAT+TGG + chr3.2:53184415-53184434 MS.gene05639:intron 40.0%
TAAGCACTTGTGACACTGTT+TGG - chr3.2:53182610-53182629 None:intergenic 40.0%
TAATAACAGCTCCTGCTATC+TGG + chr3.2:53184888-53184907 MS.gene05639:intron 40.0%
TCCAATGATCTTGGATTCTC+TGG + chr3.2:53182912-53182931 MS.gene05639:intron 40.0%
TGAGCGAAGGTAATATGGTT+GGG - chr3.2:53181913-53181932 None:intergenic 40.0%
TGGAAGGAAGCCTTTGTAAA+AGG - chr3.2:53185001-53185020 None:intergenic 40.0%
TGTTGAACTAGGAAGGGTTA+GGG + chr3.2:53183783-53183802 MS.gene05639:intron 40.0%
TTACACCGTCAGTGTTTGTA+TGG + chr3.2:53182244-53182263 MS.gene05639:CDS 40.0%
TTCATTATAGTACGGGGTAC+AGG + chr3.2:53184400-53184419 MS.gene05639:intron 40.0%
TTGAGCGAAGGTAATATGGT+TGG - chr3.2:53181914-53181933 None:intergenic 40.0%
! ATACTTGCTGCTCTTCTAAC+TGG + chr3.2:53182784-53182803 MS.gene05639:CDS 40.0%
! CAGTCCCCATTTTATAGCAT+AGG + chr3.2:53183482-53183501 MS.gene05639:intron 40.0%
! CATTTTATGAGGGGACATTG+GGG + chr3.2:53184779-53184798 MS.gene05639:intron 40.0%
! CTCATTTTATGAGGGGACAT+TGG + chr3.2:53184777-53184796 MS.gene05639:intron 40.0%
! TCTAGCTTCAAACAGAGTTG+AGG + chr3.2:53183445-53183464 MS.gene05639:intron 40.0%
! TGATGAGAGCATATGCAAGT+GGG - chr3.2:53185174-53185193 None:intergenic 40.0%
! TTTAACGCCCCCAATTTTCA+TGG + chr3.2:53183061-53183080 MS.gene05639:intron 40.0%
!! AAAGGAAATGGGAAGTGTTG+AGG + chr3.2:53183301-53183320 MS.gene05639:intron 40.0%
!! AATGTTGGTGATGGTATTGC+TGG + chr3.2:53184299-53184318 MS.gene05639:intron 40.0%
!! CACACAGCTTTGAAAGAGTA+CGG + chr3.2:53185192-53185211 MS.gene05639:intron 40.0%
!! CTTCCAAATTTTGGTCGAGT+AGG + chr3.2:53185015-53185034 MS.gene05639:CDS 40.0%
!! GGTGTTGATGATGATGATGA+TGG + chr3.2:53182121-53182140 MS.gene05639:CDS 40.0%
!! GTTGATGATGATGATGATGG+TGG + chr3.2:53182124-53182143 MS.gene05639:CDS 40.0%
!! TGATGATGATGATGGTGGAA+CGG + chr3.2:53182129-53182148 MS.gene05639:CDS 40.0%
!! TTATGGAAAGGCATTGTTCC+TGG + chr3.2:53182220-53182239 MS.gene05639:CDS 40.0%
AAAATAGGAGGGAGTGAGCT+TGG - chr3.2:53184116-53184135 None:intergenic 45.0%
AAACACTGACGGTGTAAACC+AGG - chr3.2:53182241-53182260 None:intergenic 45.0%
AAATAGGAGGGAGTGAGCTT+GGG - chr3.2:53184115-53184134 None:intergenic 45.0%
AAGAACCTCAGCGAAACAAG+CGG - chr3.2:53181959-53181978 None:intergenic 45.0%
AGCTTCAAACAGAGTTGAGG+TGG + chr3.2:53183448-53183467 MS.gene05639:intron 45.0%
CCAGGTAAAATCCAGGATGA+TGG + chr3.2:53184518-53184537 MS.gene05639:intron 45.0%
CTCCAATCCAAGAACCTGTT+TGG - chr3.2:53182662-53182681 None:intergenic 45.0%
GTAGAACCTACCACATCAAC+AGG - chr3.2:53184093-53184112 None:intergenic 45.0%
GTTGAACTAGGAAGGGTTAG+GGG + chr3.2:53183784-53183803 MS.gene05639:intron 45.0%
TGAACTTGTGGTAGGTGCTT+TGG + chr3.2:53183533-53183552 MS.gene05639:intron 45.0%
! CCATCATCCTGGATTTTACC+TGG - chr3.2:53184521-53184540 None:intergenic 45.0%
! GGTAAAATCCAGGATGATGG+GGG + chr3.2:53184521-53184540 MS.gene05639:intron 45.0%
! GTGATGAGAGCATATGCAAG+TGG - chr3.2:53185175-53185194 None:intergenic 45.0%
!! AAGGCATTGTCCATGAATCC+TGG - chr3.2:53184015-53184034 None:intergenic 45.0%
!! ATTTTGGTCGAGTAGGAGTC+TGG + chr3.2:53185022-53185041 MS.gene05639:CDS 45.0%
!! CTTGTTGGTGCTGCATTTGT+TGG + chr3.2:53182739-53182758 MS.gene05639:CDS 45.0%
!! GATGATGATGATGGTGGAAC+GGG + chr3.2:53182130-53182149 MS.gene05639:CDS 45.0%
!! TATCGGTTCTCCTGTTGATG+TGG + chr3.2:53184080-53184099 MS.gene05639:CDS 45.0%
!! AAAAAAAAATATACATATAA+AGG - chr3.2:53183716-53183735 None:intergenic 5.0%
AGAGTACGGCAGATCTGTCT+TGG + chr3.2:53185206-53185225 MS.gene05639:intron 50.0%
ATGGCACCAGAATAGCGCTT+GGG - chr3.2:53183633-53183652 None:intergenic 50.0%
CACCGTCAGTGTTTGTATGG+TGG + chr3.2:53182247-53182266 MS.gene05639:CDS 50.0%
CAGCAAAAAGACCTGCTCCT+AGG - chr3.2:53184056-53184075 None:intergenic 50.0%
GGTTCTCCTGTTGATGTGGT+AGG + chr3.2:53184084-53184103 MS.gene05639:intron 50.0%
TATTCCGTTGGATACGGCGA+AGG + chr3.2:53182072-53182091 MS.gene05639:CDS 50.0%
TTATGAGGGGACATTGGGGA+CGG + chr3.2:53184783-53184802 MS.gene05639:intron 50.0%
CATGGCACCAGAATAGCGCT+TGG - chr3.2:53183634-53183653 None:intergenic 55.0%
CTCACCTTCGCCGTATCCAA+CGG - chr3.2:53182079-53182098 None:intergenic 55.0%
CTGAAGGCCAGTTGCCATCT+GGG + chr3.2:53183604-53183623 MS.gene05639:CDS 55.0%
GCAGAGGAAGGATTGAGCGA+AGG - chr3.2:53181926-53181945 None:intergenic 55.0%
GCCAGCTAGGAGGTGAGTAA+AGG - chr3.2:53184034-53184053 None:intergenic 55.0%
GCCTTTACTCACCTCCTAGC+TGG + chr3.2:53184030-53184049 MS.gene05639:CDS 55.0%
TATGAGGGGACATTGGGGAC+GGG + chr3.2:53184784-53184803 MS.gene05639:intron 55.0%
TCTGAAGGCCAGTTGCCATC+TGG + chr3.2:53183603-53183622 MS.gene05639:CDS 55.0%
TGAAGGCCAGTTGCCATCTG+GGG + chr3.2:53183605-53183624 MS.gene05639:CDS 55.0%
TTTCGCCGCTTGTTTCGCTG+AGG + chr3.2:53181951-53181970 MS.gene05639:CDS 55.0%
! CAAGCGCTATTCTGGTGCCA+TGG + chr3.2:53183632-53183651 MS.gene05639:CDS 55.0%
AGGAAGGGTTAGGGGCCTTG+TGG + chr3.2:53183792-53183811 MS.gene05639:intron 60.0%
AGGCCCAAGTCCAGTCCACA+AGG - chr3.2:53183810-53183829 None:intergenic 60.0%
GCTTGAGTCCCCCATCATCC+TGG - chr3.2:53184532-53184551 None:intergenic 60.0%
TAGCGCTTGGGTACCCCAGA+TGG - chr3.2:53183621-53183640 None:intergenic 60.0%
TGGGTACCCCAGATGGCAAC+TGG - chr3.2:53183614-53183633 None:intergenic 60.0%
! ACTCACCTCCTAGCTGGCCT+AGG + chr3.2:53184036-53184055 MS.gene05639:CDS 60.0%
! GGGGTACCCAAGCGCTATTC+TGG + chr3.2:53183624-53183643 MS.gene05639:CDS 60.0%
!! GGGCCTTGTGGACTGGACTT+GGG + chr3.2:53183804-53183823 MS.gene05639:CDS 60.0%
CTGCTCCTAGGCCAGCTAGG+AGG - chr3.2:53184044-53184063 None:intergenic 65.0%
GACCTGCTCCTAGGCCAGCT+AGG - chr3.2:53184047-53184066 None:intergenic 65.0%
! CTCCTAGCTGGCCTAGGAGC+AGG + chr3.2:53184042-53184061 MS.gene05639:CDS 65.0%
! GGGTTAGGGGCCTTGTGGAC+TGG + chr3.2:53183797-53183816 MS.gene05639:CDS 65.0%
!! AAGCGGCGAAAGCGCTGCAG+AGG - chr3.2:53181942-53181961 None:intergenic 65.0%
!! GGCGAAAGCGCTGCAGAGGA+AGG - chr3.2:53181938-53181957 None:intergenic 65.0%
!! GGGGCCTTGTGGACTGGACT+TGG + chr3.2:53183803-53183822 MS.gene05639:CDS 65.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 53181895 53185346 53181895 ID=MS.gene05639
chr3.2 mRNA 53181895 53185346 53181895 ID=MS.gene05639.t1;Parent=MS.gene05639
chr3.2 exon 53181895 53181972 53181895 ID=MS.gene05639.t1.exon1;Parent=MS.gene05639.t1
chr3.2 CDS 53181895 53181972 53181895 ID=cds.MS.gene05639.t1;Parent=MS.gene05639.t1
chr3.2 exon 53182064 53182294 53182064 ID=MS.gene05639.t1.exon2;Parent=MS.gene05639.t1
chr3.2 CDS 53182064 53182294 53182064 ID=cds.MS.gene05639.t1;Parent=MS.gene05639.t1
chr3.2 exon 53182727 53182805 53182727 ID=MS.gene05639.t1.exon3;Parent=MS.gene05639.t1
chr3.2 CDS 53182727 53182805 53182727 ID=cds.MS.gene05639.t1;Parent=MS.gene05639.t1
chr3.2 exon 53183547 53183680 53183547 ID=MS.gene05639.t1.exon4;Parent=MS.gene05639.t1
chr3.2 CDS 53183547 53183680 53183547 ID=cds.MS.gene05639.t1;Parent=MS.gene05639.t1
chr3.2 exon 53183794 53183892 53183794 ID=MS.gene05639.t1.exon5;Parent=MS.gene05639.t1
chr3.2 CDS 53183794 53183892 53183794 ID=cds.MS.gene05639.t1;Parent=MS.gene05639.t1
chr3.2 exon 53183997 53184101 53183997 ID=MS.gene05639.t1.exon6;Parent=MS.gene05639.t1
chr3.2 CDS 53183997 53184101 53183997 ID=cds.MS.gene05639.t1;Parent=MS.gene05639.t1
chr3.2 exon 53184522 53184596 53184522 ID=MS.gene05639.t1.exon7;Parent=MS.gene05639.t1
chr3.2 CDS 53184522 53184596 53184522 ID=cds.MS.gene05639.t1;Parent=MS.gene05639.t1
chr3.2 exon 53184988 53185074 53184988 ID=MS.gene05639.t1.exon8;Parent=MS.gene05639.t1
chr3.2 CDS 53184988 53185074 53184988 ID=cds.MS.gene05639.t1;Parent=MS.gene05639.t1
chr3.2 exon 53185314 53185346 53185314 ID=MS.gene05639.t1.exon9;Parent=MS.gene05639.t1
chr3.2 CDS 53185314 53185346 53185314 ID=cds.MS.gene05639.t1;Parent=MS.gene05639.t1
Gene Sequence

>MS.gene05639

ATGTCAATCTCAGATCCCAACCATATTACCTTCGCTCAATCCTTCCTCTGCAGCGCTTTCGCCGCTTGTTTCGCTGAGGTTCTTCAATTTCTCTACATTTTTTTTTATAAATCTTCTTTCATTGATGATTCAACGATTGATCATTCTTTTTGTTTGTTTATGAATGTAGTTTTGTACTATTCCGTTGGATACGGCGAAGGTGAGACTTCAACTACAAAAGAAAGGTGGTGTTGATGATGATGATGATGGTGGAACGGGTTTGCCTAAATATAAAGGTTTACTTGGAACTGTTAAAACTATTGCTAGAGAAGAAGGGGTTTCTTCTTTATGGAAAGGCATTGTTCCTGGTTTACACCGTCAGTGTTTGTATGGTGGTTTAAGAATTGCCTTATATGATCCTGTTAGTAATTAATACTTCCCTTTTATAATACTATCATGTTATTGATTTGGAACCTTTTTATATAAGCGCCTTATTTTGCAGCTTTTAGTACAAGCGCTTATATGATAAGCACGTATGAGTATATTAAAGTCAATCTGTTTTTGTATAATTTATAAGGTGTTTTCATAAGCTATTCTCGAGAGCTTATGTAAATAAGCTAAAATTAACTTATGAACATGTCATAAGCTGTTTTCATAAGCTATCACGGGGAGCTTATGAAAATAAACTAAAAACAATTTATGAAAATGTCCTAAGATGTTTTCATAAGTTCTTCCAAACAGTGTCACAAGTGCTTATGGCAGTAGATAATCTAAAATAAGTTGATCCAAACAGGTTCTTGGATTGGAGTAATTTCGGTTTGTACGTATGATTATGAGTTGTGTTTTTCGACAGGTGAAAACTTTTCTTGTTGGTGCTGCATTTGTTGGAGAAGTTCCTTTGTATCATATGATACTTGCTGCTCTTCTAACTGGTCAGTAGTATTACTACTTAACCCATTTTTTATTGCTTCTCATTGCTTAAATGTTATGGTAGAAACATAAAGGGAGATTTTTATATGGTTTGATGTAACTGTAAGCTCCAATGATCTTGGATTCTCTGGTGGGAGAAATACCTGCAAAAGTAATTTCAATGCTTAAGTTAGTAAGGGTATAATATCGAAGTAAAAATGGGGTGGGTGACTCCATTTATATTCCGACCAGAACACAAGATAATAATATTCATTACTTTTAACGCCCCCAATTTTCATGGAAAATGAAAAATTAGAATTTTAGCTTTGTGTGTTTCTTTCTTTTTTTTTCCTTGAAAGAATGTTTCTATTAGTTTATTAAGTAGCTTTTTCACCTTGATAATGTAACACTAGAATTTATCATGAATGTGAAATAATAATTGCTTGATGTAGGTTTAAATCATTTGATTTAAATTTAGGTGATGTAGATAGTTACAAAATAGGTTGTAGATTGGAAAGAAAGGAAATGGGAAGTGTTGAGGAAATTCATAAGAGAATTAGTTAGGTTTCTATTTTTGGAAAAAAAGACTTAAATGCTCATAAGTTGCATTTCCTTTCTAAATAAGGAGAATGATTGCTTGTTTAATTCATAGTGTGGAGAATTCTAGCTTCAAACAGAGTTGAGGTGGTTAGCACTTACCAGTCCCCATTTTATAGCATAGGTTATATGTTAGTCATTGATTCATTTTTTTGAACTTGTGGTAGGTGCTTTGGCAATCACTATCGCTAATCCGACAGATCTAGTCAAAGTTAGGCTTCAATCTGAAGGCCAGTTGCCATCTGGGGTACCCAAGCGCTATTCTGGTGCCATGGATGCATATTCTACCATATTGAGACAAGTCAGACTTTCTTCTGATGTGTTTTTTTGATTCCTTTATATGTATATTTTTTTTTTGAAGAAATTCCTTTATATGTATATTATGTCTCATTTTGTATATATATGTTGAACTAGGAAGGGTTAGGGGCCTTGTGGACTGGACTTGGGCCTAATATAGCACGAAATGCAATTATAAATGCTGCTGAACTAGCTAGTTATGATCGAGTGAAACAGGTAATCACATTATAAGGGATTCTAAATTGGAATTTGCTAAAATCCAATGTTGCATTACATGAAATGCTACTGCAATGCTGCTCTGATTTTTCATACTTATGCAGACGATTTTGAAAATTCCAGGATTCATGGACAATGCCTTTACTCACCTCCTAGCTGGCCTAGGAGCAGGTCTTTTTGCTGTTTTTATCGGTTCTCCTGTTGATGTGGTAGGTTCTACCCAAGCTCACTCCCTCCTATTTTCTTTAACTTCAGTCTACACTTGCGTTTTATATGAACATTTGATAGTAATGACAGACCTTCAATAATGAAATGAGACAGAAAAAGAAGGAAGACACTAGAAGTGACATATCTTTGGTCTTTTGGACAAACTTTTGGTGTTCAATCTTGAAAATTTAATGCTAACAATGTTGGTGATGGTATTGCTGGAAAAATAAGATGAATCCAAACTGTTTAACTGTGTTCTCCCACAAACATGTATTTTGAAAATTTAGAACTATTGCAAGATTCATTATAGTACGGGGTACAGGAAAACGTTCAATTGGTCGATTTTTGGTGAACACTTATGAAGTAACACTATCTAAATTTTCAAAGCAAATTATGATTTATCCATGTTTATAATTTTCCAGGTAAAATCCAGGATGATGGGGGACTCAAGCTACAAAAACACATTTGACTGTTTTCTTAAGACTTTGTTCAATGAGGTAAGTAAACTTCTTCCTTGTTTGATTTTGTCATTGTTGTATTTGAACTTTAAATATGAATCCTATGAGAGTTGAAAGATTTATGACAATAATTAGCATCTTTTTTGTTATTATGTTAGTTTTATTTTAACCCTTTATATTGGATGTTCTGATTATTCTTTGAATGTCTTCGATGAATATCTCATTTTATGAGGGGACATTGGGGACGGGACTTATAGTTAAACAATGAATAACTTTTAATACTTGCTGCAACCTTTATTGCTCTGTTCTCAAGTGATCTGAAAGTATTTTTAATAACAGCTCCTGCTATCTGGTTTGTTTGATAAAAAAGTCTGCATAAAGTTTATCATTGTTTTGGACAACTTGAATTGATGTGAGAAATGTATTGCAGGGATTTTTGGCCTTTTACAAAGGCTTCCTTCCAAATTTTGGTCGAGTAGGAGTCTGGAACGTGATTATGTTTCTTACCCTTGAACAAGTAAGATACTCATAAAATTCGCAATTCCGGTAAAATCACTTTATAAACTGCATTGCACCTTGTTATCCATTTCTAATGTCCTAATTAAAGGTTTGACCCACTTGCATATGCTCTCATCACACAGCTTTGAAAGAGTACGGCAGATCTGTCTTGGTCTAATCTAGATTTAAAATGAATTTTCTTACAACATAGCCGCTGATGCATGCTTAATTTCTGAAAATTGGTTCCGTATGCTTCAGCTTCTAACTTATCACATACTCAAGAGAAACTAG

Protein sequence

>MS.gene05639.t1

MSISDPNHITFAQSFLCSAFAACFAEFCTIPLDTAKVRLQLQKKGGVDDDDDGGTGLPKYKGLLGTVKTIAREEGVSSLWKGIVPGLHRQCLYGGLRIALYDPVKTFLVGAAFVGEVPLYHMILAALLTGALAITIANPTDLVKVRLQSEGQLPSGVPKRYSGAMDAYSTILRQEGLGALWTGLGPNIARNAIINAAELASYDRVKQTILKIPGFMDNAFTHLLAGLGAGLFAVFIGSPVDVVKSRMMGDSSYKNTFDCFLKTLFNEGFLAFYKGFLPNFGRVGVWNVIMFLTLEQLLTYHILKRN