Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62682.t1 | XP_003630950.2 | 98.2 | 605 | 11 | 0 | 1 | 605 | 1 | 605 | 9.90E-249 | 869.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62682.t1 | Q8L7S4 | 74.6 | 627 | 132 | 9 | 1 | 605 | 1 | 622 | 2.6e-173 | 610.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62682.t1 | G7LBD9 | 98.2 | 605 | 11 | 0 | 1 | 605 | 1 | 605 | 7.1e-249 | 869.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene62682 | 0.82295 | 1.80E-53 | -1.69E-46 |
| MS.gene049341 | MS.gene62682 | 0.816368 | 5.73E-52 | -1.69E-46 |
| MS.gene049382 | MS.gene62682 | 0.829227 | 5.79E-55 | -1.69E-46 |
| MS.gene049404 | MS.gene62682 | 0.811831 | 5.75E-51 | -1.69E-46 |
| MS.gene049435 | MS.gene62682 | 0.806297 | 8.81E-50 | -1.69E-46 |
| MS.gene049501 | MS.gene62682 | 0.818343 | 2.06E-52 | -1.69E-46 |
| MS.gene049821 | MS.gene62682 | 0.825193 | 5.36E-54 | -1.69E-46 |
| MS.gene049850 | MS.gene62682 | 0.820714 | 5.93E-53 | -1.69E-46 |
| MS.gene049887 | MS.gene62682 | 0.821345 | 4.24E-53 | -1.69E-46 |
| MS.gene049979 | MS.gene62682 | 0.822115 | 2.82E-53 | -1.69E-46 |
| MS.gene050020 | MS.gene62682 | 0.874729 | 5.38E-68 | -1.69E-46 |
| MS.gene05016 | MS.gene62682 | 0.816869 | 4.43E-52 | -1.69E-46 |
| MS.gene050241 | MS.gene62682 | 0.805825 | 1.11E-49 | -1.69E-46 |
| MS.gene050408 | MS.gene62682 | 0.829295 | 5.57E-55 | -1.69E-46 |
| MS.gene050442 | MS.gene62682 | 0.826055 | 3.35E-54 | -1.69E-46 |
| MS.gene050586 | MS.gene62682 | 0.867741 | 1.09E-65 | -1.69E-46 |
| MS.gene050762 | MS.gene62682 | 0.840335 | 9.25E-58 | -1.69E-46 |
| MS.gene050763 | MS.gene62682 | 0.838829 | 2.28E-57 | -1.69E-46 |
| MS.gene050778 | MS.gene62682 | 0.823947 | 1.05E-53 | -1.69E-46 |
| MS.gene050780 | MS.gene62682 | 0.805663 | 1.20E-49 | -1.69E-46 |
| MS.gene050807 | MS.gene62682 | 0.891953 | 2.48E-74 | -1.69E-46 |
| MS.gene050808 | MS.gene62682 | 0.863671 | 2.11E-64 | -1.69E-46 |
| MS.gene050815 | MS.gene62682 | 0.831897 | 1.29E-55 | -1.69E-46 |
| MS.gene050959 | MS.gene62682 | 0.854414 | 1.25E-61 | -1.69E-46 |
| MS.gene051102 | MS.gene62682 | 0.81708 | 3.97E-52 | -1.69E-46 |
| MS.gene051180 | MS.gene62682 | 0.839181 | 1.85E-57 | -1.69E-46 |
| MS.gene051198 | MS.gene62682 | 0.811262 | 7.65E-51 | -1.69E-46 |
| MS.gene051243 | MS.gene62682 | 0.802015 | 6.86E-49 | -1.69E-46 |
| MS.gene051247 | MS.gene62682 | 0.813692 | 2.25E-51 | -1.69E-46 |
| MS.gene051279 | MS.gene62682 | 0.801967 | 7.01E-49 | -1.69E-46 |
| MS.gene051328 | MS.gene62682 | 0.809808 | 1.58E-50 | -1.69E-46 |
| MS.gene051388 | MS.gene62682 | 0.819179 | 1.33E-52 | -1.69E-46 |
| MS.gene051577 | MS.gene62682 | 0.802001 | 6.90E-49 | -1.69E-46 |
| MS.gene05157 | MS.gene62682 | 0.849622 | 2.87E-60 | -1.69E-46 |
| MS.gene051719 | MS.gene62682 | 0.848373 | 6.39E-60 | -1.69E-46 |
| MS.gene051720 | MS.gene62682 | 0.85273 | 3.81E-61 | -1.69E-46 |
| MS.gene051789 | MS.gene62682 | 0.830026 | 3.70E-55 | -1.69E-46 |
| MS.gene052020 | MS.gene62682 | 0.845831 | 3.18E-59 | -1.69E-46 |
| MS.gene052133 | MS.gene62682 | 0.854139 | 1.50E-61 | -1.69E-46 |
| MS.gene05215 | MS.gene62682 | 0.809159 | 2.17E-50 | -1.69E-46 |
| MS.gene052256 | MS.gene62682 | 0.806136 | 9.53E-50 | -1.69E-46 |
| MS.gene052323 | MS.gene62682 | 0.84633 | 2.32E-59 | -1.69E-46 |
| MS.gene052397 | MS.gene62682 | 0.812652 | 3.81E-51 | -1.69E-46 |
| MS.gene052516 | MS.gene62682 | 0.828275 | 9.84E-55 | -1.69E-46 |
| MS.gene052665 | MS.gene62682 | 0.969552 | 2.73E-130 | -1.69E-46 |
| MS.gene052732 | MS.gene62682 | 0.855531 | 5.93E-62 | -1.69E-46 |
| MS.gene052856 | MS.gene62682 | 0.802542 | 5.34E-49 | -1.69E-46 |
| MS.gene052858 | MS.gene62682 | 0.803367 | 3.61E-49 | -1.69E-46 |
| MS.gene052860 | MS.gene62682 | 0.809665 | 1.69E-50 | -1.69E-46 |
| MS.gene052896 | MS.gene62682 | 0.821087 | 4.87E-53 | -1.69E-46 |
| MS.gene053074 | MS.gene62682 | 0.818241 | 2.17E-52 | -1.69E-46 |
| MS.gene053079 | MS.gene62682 | 0.814131 | 1.80E-51 | -1.69E-46 |
| MS.gene053144 | MS.gene62682 | 0.834079 | 3.69E-56 | -1.69E-46 |
| MS.gene053174 | MS.gene62682 | 0.837286 | 5.69E-57 | -1.69E-46 |
| MS.gene053221 | MS.gene62682 | 0.825778 | 3.89E-54 | -1.69E-46 |
| MS.gene053226 | MS.gene62682 | 0.800254 | 1.57E-48 | -1.69E-46 |
| MS.gene053437 | MS.gene62682 | 0.811992 | 5.30E-51 | -1.69E-46 |
| MS.gene053563 | MS.gene62682 | 0.838864 | 2.23E-57 | -1.69E-46 |
| MS.gene053565 | MS.gene62682 | 0.813905 | 2.02E-51 | -1.69E-46 |
| MS.gene053581 | MS.gene62682 | 0.833839 | 4.23E-56 | -1.69E-46 |
| MS.gene053599 | MS.gene62682 | 0.815028 | 1.14E-51 | -1.69E-46 |
| MS.gene053630 | MS.gene62682 | 0.836398 | 9.58E-57 | -1.69E-46 |
| MS.gene053894 | MS.gene62682 | 0.820877 | 5.44E-53 | -1.69E-46 |
| MS.gene054379 | MS.gene62682 | 0.830965 | 2.18E-55 | -1.69E-46 |
| MS.gene054550 | MS.gene62682 | 0.842317 | 2.78E-58 | -1.69E-46 |
| MS.gene054584 | MS.gene62682 | 0.841511 | 4.55E-58 | -1.69E-46 |
| MS.gene054596 | MS.gene62682 | 0.808011 | 3.82E-50 | -1.69E-46 |
| MS.gene05462 | MS.gene62682 | 0.830738 | 2.48E-55 | -1.69E-46 |
| MS.gene054697 | MS.gene62682 | 0.804189 | 2.43E-49 | -1.69E-46 |
| MS.gene054833 | MS.gene62682 | 0.807004 | 6.25E-50 | -1.69E-46 |
| MS.gene055357 | MS.gene62682 | 0.810018 | 1.42E-50 | -1.69E-46 |
| MS.gene055465 | MS.gene62682 | 0.882889 | 7.13E-71 | -1.69E-46 |
| MS.gene055466 | MS.gene62682 | 0.874061 | 9.06E-68 | -1.69E-46 |
| MS.gene055467 | MS.gene62682 | 0.817352 | 3.45E-52 | -1.69E-46 |
| MS.gene055468 | MS.gene62682 | 0.878416 | 2.86E-69 | -1.69E-46 |
| MS.gene055469 | MS.gene62682 | 0.876078 | 1.86E-68 | -1.69E-46 |
| MS.gene055512 | MS.gene62682 | 0.834873 | 2.33E-56 | -1.69E-46 |
| MS.gene055580 | MS.gene62682 | -0.833966 | 3.94E-56 | -1.69E-46 |
| MS.gene055608 | MS.gene62682 | 0.818184 | 2.24E-52 | -1.69E-46 |
| MS.gene055816 | MS.gene62682 | -0.813115 | 3.01E-51 | -1.69E-46 |
| MS.gene055861 | MS.gene62682 | -0.853802 | 1.88E-61 | -1.69E-46 |
| MS.gene055890 | MS.gene62682 | 0.806502 | 7.98E-50 | -1.69E-46 |
| MS.gene055891 | MS.gene62682 | 0.831159 | 1.95E-55 | -1.69E-46 |
| MS.gene055926 | MS.gene62682 | 0.810687 | 1.02E-50 | -1.69E-46 |
| MS.gene056043 | MS.gene62682 | -0.826842 | 2.17E-54 | -1.69E-46 |
| MS.gene05604 | MS.gene62682 | 0.821909 | 3.14E-53 | -1.69E-46 |
| MS.gene056069 | MS.gene62682 | -0.818788 | 1.63E-52 | -1.69E-46 |
| MS.gene056173 | MS.gene62682 | 0.817107 | 3.92E-52 | -1.69E-46 |
| MS.gene056308 | MS.gene62682 | 0.824353 | 8.45E-54 | -1.69E-46 |
| MS.gene05639 | MS.gene62682 | 0.829011 | 6.53E-55 | -1.69E-46 |
| MS.gene056432 | MS.gene62682 | 0.821234 | 4.50E-53 | -1.69E-46 |
| MS.gene056507 | MS.gene62682 | 0.804659 | 1.94E-49 | -1.69E-46 |
| MS.gene056552 | MS.gene62682 | 0.801717 | 7.89E-49 | -1.69E-46 |
| MS.gene056553 | MS.gene62682 | 0.824601 | 7.39E-54 | -1.69E-46 |
| MS.gene056584 | MS.gene62682 | 0.83962 | 1.42E-57 | -1.69E-46 |
| MS.gene056589 | MS.gene62682 | 0.846724 | 1.81E-59 | -1.69E-46 |
| MS.gene056643 | MS.gene62682 | 0.833963 | 3.94E-56 | -1.69E-46 |
| MS.gene056760 | MS.gene62682 | 0.826536 | 2.57E-54 | -1.69E-46 |
| MS.gene057057 | MS.gene62682 | 0.803139 | 4.02E-49 | -1.69E-46 |
| MS.gene057060 | MS.gene62682 | 0.814428 | 1.55E-51 | -1.69E-46 |
| MS.gene057444 | MS.gene62682 | 0.821796 | 3.34E-53 | -1.69E-46 |
| MS.gene057446 | MS.gene62682 | 0.821689 | 3.53E-53 | -1.69E-46 |
| MS.gene057869 | MS.gene62682 | 0.827032 | 1.96E-54 | -1.69E-46 |
| MS.gene057915 | MS.gene62682 | 0.817842 | 2.67E-52 | -1.69E-46 |
| MS.gene058087 | MS.gene62682 | 0.823234 | 1.55E-53 | -1.69E-46 |
| MS.gene058168 | MS.gene62682 | 0.818173 | 2.25E-52 | -1.69E-46 |
| MS.gene058636 | MS.gene62682 | 0.850432 | 1.70E-60 | -1.69E-46 |
| MS.gene058638 | MS.gene62682 | 0.825623 | 4.24E-54 | -1.69E-46 |
| MS.gene058639 | MS.gene62682 | 0.832478 | 9.24E-56 | -1.69E-46 |
| MS.gene058851 | MS.gene62682 | 0.818911 | 1.53E-52 | -1.69E-46 |
| MS.gene058852 | MS.gene62682 | 0.833129 | 6.37E-56 | -1.69E-46 |
| MS.gene058906 | MS.gene62682 | 0.81562 | 8.42E-52 | -1.69E-46 |
| MS.gene058982 | MS.gene62682 | 0.829685 | 4.48E-55 | -1.69E-46 |
| MS.gene059006 | MS.gene62682 | 0.808234 | 3.42E-50 | -1.69E-46 |
| MS.gene059331 | MS.gene62682 | 0.805471 | 1.31E-49 | -1.69E-46 |
| MS.gene059335 | MS.gene62682 | 0.800987 | 1.11E-48 | -1.69E-46 |
| MS.gene059713 | MS.gene62682 | 0.829971 | 3.82E-55 | -1.69E-46 |
| MS.gene059725 | MS.gene62682 | 0.847773 | 9.35E-60 | -1.69E-46 |
| MS.gene05978 | MS.gene62682 | 0.803435 | 3.49E-49 | -1.69E-46 |
| MS.gene059937 | MS.gene62682 | 0.86517 | 7.17E-65 | -1.69E-46 |
| MS.gene060137 | MS.gene62682 | -0.81437 | 1.59E-51 | -1.69E-46 |
| MS.gene060194 | MS.gene62682 | 0.805394 | 1.36E-49 | -1.69E-46 |
| MS.gene060404 | MS.gene62682 | 0.802971 | 4.35E-49 | -1.69E-46 |
| MS.gene060470 | MS.gene62682 | 0.824856 | 6.43E-54 | -1.69E-46 |
| MS.gene060480 | MS.gene62682 | 0.843189 | 1.63E-58 | -1.69E-46 |
| MS.gene060587 | MS.gene62682 | 0.864887 | 8.79E-65 | -1.69E-46 |
| MS.gene060619 | MS.gene62682 | 0.821389 | 4.14E-53 | -1.69E-46 |
| MS.gene060637 | MS.gene62682 | 0.837274 | 5.72E-57 | -1.69E-46 |
| MS.gene060803 | MS.gene62682 | 0.829534 | 4.88E-55 | -1.69E-46 |
| MS.gene060884 | MS.gene62682 | 0.810589 | 1.07E-50 | -1.69E-46 |
| MS.gene061006 | MS.gene62682 | 0.826897 | 2.11E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62682.t1 | MTR_8g105350 | 98.020 | 606 | 12 | 0 | 1 | 606 | 1 | 606 | 0.0 | 1201 |
| MS.gene62682.t1 | MTR_1g032520 | 82.838 | 606 | 99 | 2 | 1 | 606 | 1 | 601 | 0.0 | 967 |
| MS.gene62682.t1 | MTR_8g021120 | 83.279 | 610 | 92 | 5 | 1 | 606 | 1 | 604 | 0.0 | 951 |
| MS.gene62682.t1 | MTR_4g133890 | 49.540 | 543 | 233 | 12 | 56 | 573 | 17 | 543 | 7.91e-148 | 439 |
| MS.gene62682.t1 | MTR_4g133890 | 49.540 | 543 | 233 | 12 | 56 | 573 | 25 | 551 | 2.75e-147 | 438 |
| MS.gene62682.t1 | MTR_2g026590 | 47.993 | 548 | 253 | 9 | 57 | 587 | 13 | 545 | 1.50e-145 | 432 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62682.t1 | AT1G24764 | 74.400 | 625 | 137 | 8 | 1 | 605 | 1 | 622 | 0.0 | 891 |
| MS.gene62682.t1 | AT1G24764 | 74.400 | 625 | 137 | 8 | 1 | 605 | 60 | 681 | 0.0 | 888 |
| MS.gene62682.t1 | AT1G68060 | 75.980 | 612 | 125 | 10 | 1 | 597 | 1 | 605 | 0.0 | 887 |
| MS.gene62682.t1 | AT1G14840 | 74.622 | 595 | 128 | 10 | 20 | 604 | 11 | 592 | 0.0 | 840 |
| MS.gene62682.t1 | AT2G01750 | 75.648 | 579 | 129 | 6 | 30 | 604 | 47 | 617 | 0.0 | 821 |
| MS.gene62682.t1 | AT2G01750 | 75.606 | 578 | 129 | 6 | 30 | 603 | 47 | 616 | 0.0 | 819 |
| MS.gene62682.t1 | AT1G14840 | 71.405 | 605 | 135 | 11 | 10 | 604 | 1 | 577 | 0.0 | 798 |
| MS.gene62682.t1 | AT1G24764 | 78.390 | 472 | 96 | 4 | 137 | 605 | 1 | 469 | 0.0 | 731 |
| MS.gene62682.t1 | AT4G17220 | 46.692 | 529 | 234 | 7 | 57 | 578 | 6 | 493 | 3.75e-135 | 404 |
Find 129 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACGGTTTCCGGATCGTTTA+AGG | 0.181490 | 4.2:-1449092 | MS.gene62682:CDS |
| CCGGTGCCGTTGACGGTTTC+CGG | 0.215030 | 4.2:-1449103 | MS.gene62682:CDS |
| CCAGGAGGAAAACAAAATTT+TGG | 0.247069 | 4.2:-1447437 | MS.gene62682:intron |
| AGGAGTAAAATTCTTCTAAA+TGG | 0.256803 | 4.2:-1446469 | MS.gene62682:CDS |
| ACAAAGAGGAAAACAATAAT+TGG | 0.267719 | 4.2:-1446399 | MS.gene62682:CDS |
| CAATAATTGGAAAGGAAGTT+TGG | 0.278285 | 4.2:-1446386 | MS.gene62682:CDS |
| CCTCTAGTTCCCTGACAGTT+TGG | 0.279717 | 4.2:+1447371 | None:intergenic |
| CTCTAGTTCCCTGACAGTTT+GGG | 0.283034 | 4.2:+1447372 | None:intergenic |
| CTAGAGGAGGCTGTCCTTGC+AGG | 0.298621 | 4.2:-1447355 | MS.gene62682:CDS |
| TACTCTGTTTGCTGTTACCT+TGG | 0.304652 | 4.2:+1447134 | None:intergenic |
| GCTCAGCAACAGCTTGTTAC+TGG | 0.317278 | 4.2:-1445949 | MS.gene62682:CDS |
| TGCCTCAACTTCCATAGCTT+TGG | 0.325019 | 4.2:+1446089 | None:intergenic |
| AGCCATTCTAGCTCCTTTAG+AGG | 0.326419 | 4.2:-1447872 | MS.gene62682:CDS |
| GGACCGTCTTACGAAATCTA+AGG | 0.330608 | 4.2:-1447674 | MS.gene62682:CDS |
| CATGAACTTGCTTCATGGTT+CGG | 0.340177 | 4.2:-1449005 | MS.gene62682:CDS |
| ATATCCAAACCCAACTCTAA+TGG | 0.348727 | 4.2:-1446610 | MS.gene62682:CDS |
| TGTTGCTGAGCACTGTTCAT+AGG | 0.349019 | 4.2:+1445961 | None:intergenic |
| GCCTTCCCGACGACAATCCC+TGG | 0.358957 | 4.2:-1446647 | MS.gene62682:CDS |
| GAACATCATCCTTTCAAATA+AGG | 0.359369 | 4.2:-1446573 | MS.gene62682:CDS |
| ATCATCCACCATGGAGGCCT+TGG | 0.362971 | 4.2:+1447606 | None:intergenic |
| GATATAGAGGATAATGTTCC+AGG | 0.366472 | 4.2:-1446334 | MS.gene62682:CDS |
| GCATTCGATGAGACCTAGTT+TGG | 0.367879 | 4.2:-1449041 | MS.gene62682:CDS |
| TCTACTAATGGCAAGTCATT+TGG | 0.371972 | 4.2:+1446355 | None:intergenic |
| TGAAGAGCGACGATTCTTGC+AGG | 0.372497 | 4.2:-1447046 | MS.gene62682:intron |
| GGGAGAGATGCAGCAACTTC+GGG | 0.383230 | 4.2:-1446907 | MS.gene62682:CDS |
| TGAAGCTGAAAGGACTGTTC+AGG | 0.393847 | 4.2:-1447638 | MS.gene62682:CDS |
| AAACCCATTAGAGTTGGGTT+TGG | 0.396024 | 4.2:+1446606 | None:intergenic |
| GAGTTCATGAACTTGCTTCA+TGG | 0.400786 | 4.2:-1449010 | MS.gene62682:CDS |
| GAAGAATTGTCGAAGGTAGA+TGG | 0.401031 | 4.2:-1448146 | MS.gene62682:CDS |
| TTATCCTCTATATCTACTAA+TGG | 0.416061 | 4.2:+1446343 | None:intergenic |
| TGGTTCGGATCCAGTGAAAC+TGG | 0.417554 | 4.2:-1448990 | MS.gene62682:CDS |
| TATCCAAACCCAACTCTAAT+GGG | 0.418318 | 4.2:-1446609 | MS.gene62682:CDS |
| TGTTCAGGTTGCCTTGGCCA+AGG | 0.418461 | 4.2:-1447623 | MS.gene62682:CDS |
| CGACTTGAGAATGATGTTAG+AGG | 0.418672 | 4.2:-1448959 | MS.gene62682:intron |
| CTTTAGTTCTTTCAGAAGAC+TGG | 0.425602 | 4.2:+1446422 | None:intergenic |
| AAAAGCTCACCCAAACTGTC+AGG | 0.427752 | 4.2:-1447381 | MS.gene62682:CDS |
| TCAAGATGATAACAGAGCTT+TGG | 0.430655 | 4.2:-1447695 | MS.gene62682:CDS |
| GTCAGAAACCCATTAGAGTT+GGG | 0.435909 | 4.2:+1446601 | None:intergenic |
| GGTGACGCCGGTGCCGTTGA+CGG | 0.437292 | 4.2:-1449110 | MS.gene62682:CDS |
| TGCCTTGGCCAAGGCCTCCA+TGG | 0.440738 | 4.2:-1447614 | MS.gene62682:CDS |
| CTTCACATTGCTGAAACGCT+TGG | 0.448038 | 4.2:+1445987 | None:intergenic |
| AGGGAGAGATGCAGCAACTT+CGG | 0.463109 | 4.2:-1446908 | MS.gene62682:CDS |
| CGATTAAGCTCCAGTTTCAC+TGG | 0.465244 | 4.2:+1448980 | None:intergenic |
| TTTCCCTTCCTTAAACGATC+CGG | 0.468302 | 4.2:+1449084 | None:intergenic |
| GGAGCTAGAATGGCTTCTAT+AGG | 0.468769 | 4.2:+1447880 | None:intergenic |
| CTTGCCATTAGTAGATATAG+AGG | 0.469171 | 4.2:-1446347 | MS.gene62682:CDS |
| AGCATTCTTCAAAATTGAGC+TGG | 0.473860 | 4.2:+1446537 | None:intergenic |
| GTTGCTGAGCACTGTTCATA+GGG | 0.474288 | 4.2:+1445962 | None:intergenic |
| CTGTAGTAGTGGCTAATGAA+TGG | 0.479204 | 4.2:-1447110 | MS.gene62682:CDS |
| GTATGATTTGCTGCAGAAAG+AGG | 0.486051 | 4.2:-1446305 | MS.gene62682:CDS |
| AGGGAAAATGTGTTAGCAAT+GGG | 0.489064 | 4.2:-1446669 | MS.gene62682:CDS |
| TGATGGTGGCTCTAGGTCAC+TGG | 0.489643 | 4.2:-1446494 | MS.gene62682:CDS |
| AGTCAGAAACCCATTAGAGT+TGG | 0.493992 | 4.2:+1446600 | None:intergenic |
| CACCATGGAGGCCTTGGCCA+AGG | 0.496680 | 4.2:+1447612 | None:intergenic |
| GTCCTAGTGTTGAGGAAAGC+TGG | 0.499161 | 4.2:-1446283 | MS.gene62682:CDS |
| AAGGACTGTTCAGGTTGCCT+TGG | 0.499232 | 4.2:-1447629 | MS.gene62682:CDS |
| AGCCTCTAAAGGAGCTAGAA+TGG | 0.499413 | 4.2:+1447870 | None:intergenic |
| AACTCATCCGCATCCAAACT+AGG | 0.505439 | 4.2:+1449028 | None:intergenic |
| CTCAGCAACAGCTTGTTACT+GGG | 0.513643 | 4.2:-1445948 | MS.gene62682:CDS |
| TTGAGGCAAAGAAGATGCGA+AGG | 0.515230 | 4.2:-1446074 | MS.gene62682:CDS |
| CCGGAAACCGTCAACGGCAC+CGG | 0.518335 | 4.2:+1449103 | None:intergenic |
| TTCCACCCAGGGATTGTCGT+CGG | 0.518701 | 4.2:+1446641 | None:intergenic |
| AGGCTGAACTCAAGCTTGCT+CGG | 0.519693 | 4.2:-1447852 | MS.gene62682:CDS |
| AGCTTGAGTTCAGCCTCTAA+AGG | 0.520147 | 4.2:+1447859 | None:intergenic |
| TCCACCCAGGGATTGTCGTC+GGG | 0.522810 | 4.2:+1446642 | None:intergenic |
| GACTGGTTAAACGACGAACT+TGG | 0.527055 | 4.2:+1446439 | None:intergenic |
| TATTAATCGCGGCACTTCAG+AGG | 0.534381 | 4.2:-1446689 | MS.gene62682:CDS |
| GCATAGACTGAAGGTGGCAG+AGG | 0.535525 | 4.2:-1447407 | MS.gene62682:CDS |
| GGATACATTGACCAAAGCTA+TGG | 0.536322 | 4.2:-1446100 | MS.gene62682:CDS |
| AAGGGTCCATGCTGCTCAGA+AGG | 0.536406 | 4.2:-1447917 | MS.gene62682:CDS |
| CCCAGGGATTGTCGTCGGGA+AGG | 0.537826 | 4.2:+1446646 | None:intergenic |
| GCGAAGGGAGGTAGCTGTCA+TGG | 0.538751 | 4.2:-1446058 | MS.gene62682:CDS |
| CACAGAGGACCTTATTTGAA+AGG | 0.541508 | 4.2:+1446564 | None:intergenic |
| GAAACAGATTGAGATTTGCC+AGG | 0.542161 | 4.2:-1447557 | MS.gene62682:intron |
| CAGCTGAAGCTACTCTTCGA+AGG | 0.542966 | 4.2:-1447936 | MS.gene62682:CDS |
| CGGTTCCATTCCCACGTCAC+CGG | 0.547668 | 4.2:+1449138 | None:intergenic |
| TTGCAGCAGCACCGCCTGCA+AGG | 0.549043 | 4.2:+1447341 | None:intergenic |
| ATTAATCGCGGCACTTCAGA+GGG | 0.552798 | 4.2:-1446688 | MS.gene62682:CDS |
| TGAAAGAACTAAAGACAAAG+AGG | 0.552858 | 4.2:-1446413 | MS.gene62682:CDS |
| CTTCCTTAGATTTCGTAAGA+CGG | 0.553947 | 4.2:+1447671 | None:intergenic |
| GAGGGAAAATGTGTTAGCAA+TGG | 0.554350 | 4.2:-1446670 | MS.gene62682:CDS |
| CAGCACTTCTTGAAGCTGAA+AGG | 0.556835 | 4.2:-1447648 | MS.gene62682:CDS |
| AGCAAATCATACAAAACTCC+TGG | 0.558030 | 4.2:+1446316 | None:intergenic |
| CCTTCCCGACGACAATCCCT+GGG | 0.558801 | 4.2:-1446646 | MS.gene62682:CDS |
| TCGGGAGTTGGCTCGTGCCA+AGG | 0.564508 | 4.2:-1447151 | MS.gene62682:CDS |
| TATGCTATCTGTTCCACCCA+GGG | 0.568259 | 4.2:+1446630 | None:intergenic |
| AGATAAAGACGATGCCATTG+AGG | 0.568782 | 4.2:-1446236 | MS.gene62682:intron |
| TTTCCGGATCGTTTAAGGAA+GGG | 0.568827 | 4.2:-1449087 | MS.gene62682:CDS |
| AAACAGAGTAGCTGTAGTAG+TGG | 0.569015 | 4.2:-1447121 | MS.gene62682:CDS |
| GGAACCGACGGTGGTGACGC+CGG | 0.569709 | 4.2:-1449122 | MS.gene62682:CDS |
| GAGGAAAACAATAATTGGAA+AGG | 0.570719 | 4.2:-1446394 | MS.gene62682:CDS |
| TGGTTAAACGACGAACTTGG+TGG | 0.570824 | 4.2:+1446442 | None:intergenic |
| GTTTCCGGATCGTTTAAGGA+AGG | 0.572546 | 4.2:-1449088 | MS.gene62682:CDS |
| GGAGGTAGCTGTCATGGAGA+AGG | 0.573439 | 4.2:-1446052 | MS.gene62682:CDS |
| GACCAAAGCTATGGAAGTTG+AGG | 0.577831 | 4.2:-1446091 | MS.gene62682:CDS |
| GGAGGTGGCTGCAATGCGCG+TGG | 0.579154 | 4.2:-1446031 | MS.gene62682:CDS |
| AACGATCCGGAAACCGTCAA+CGG | 0.580826 | 4.2:+1449097 | None:intergenic |
| GATGAGACCTAGTTTGGATG+CGG | 0.582124 | 4.2:-1449035 | MS.gene62682:CDS |
| AACTGTCAGGGAACTAGAGG+AGG | 0.584056 | 4.2:-1447368 | MS.gene62682:CDS |
| AGCTGTCATGGAGAAGGAGG+TGG | 0.586105 | 4.2:-1446046 | MS.gene62682:CDS |
| GCTAGAATGGCTTCTATAGG+AGG | 0.588125 | 4.2:+1447883 | None:intergenic |
| GAGGAGGCTGTCCTTGCAGG+CGG | 0.590371 | 4.2:-1447352 | MS.gene62682:CDS |
| CGTCATCCTTCTGAGCAGCA+TGG | 0.593027 | 4.2:+1447911 | None:intergenic |
| ATTCTTCAAAATTGAGCTGG+AGG | 0.593608 | 4.2:+1446540 | None:intergenic |
| GGTAGCTGTCATGGAGAAGG+AGG | 0.598076 | 4.2:-1446049 | MS.gene62682:CDS |
| TGATGAAAAGAAAGCATCGA+TGG | 0.599203 | 4.2:-1447971 | MS.gene62682:CDS |
| AGCTGAAGCTACTCTTCGAA+GGG | 0.608327 | 4.2:-1447935 | MS.gene62682:CDS |
| GGACAGAATGCATAGACTGA+AGG | 0.608459 | 4.2:-1447416 | MS.gene62682:CDS |
| CAGAATGCATAGACTGAAGG+TGG | 0.610746 | 4.2:-1447413 | MS.gene62682:CDS |
| ACTCAAGCTTGCTCGGCAAG+AGG | 0.612136 | 4.2:-1447845 | MS.gene62682:intron |
| CTTGGCCAAGGCCTCCATGG+TGG | 0.617740 | 4.2:-1447611 | MS.gene62682:CDS |
| GGCACCGGCGTCACCACCGT+CGG | 0.624819 | 4.2:+1449118 | None:intergenic |
| GTGGCTCTAGGTCACTGGAA+AGG | 0.628966 | 4.2:-1446489 | MS.gene62682:CDS |
| CCAAACTGTCAGGGAACTAG+AGG | 0.629519 | 4.2:-1447371 | MS.gene62682:CDS |
| GACCAGCTTTCCTCAACACT+AGG | 0.630129 | 4.2:+1446281 | None:intergenic |
| GCTTACTGAAGAATTGTCGA+AGG | 0.641029 | 4.2:-1448153 | MS.gene62682:CDS |
| ATATGCTATCTGTTCCACCC+AGG | 0.641087 | 4.2:+1446629 | None:intergenic |
| AAAGCTCACCCAAACTGTCA+GGG | 0.642656 | 4.2:-1447380 | MS.gene62682:CDS |
| AGAAAGAGGTCCTAGTGTTG+AGG | 0.642915 | 4.2:-1446291 | MS.gene62682:CDS |
| GGCAAAGAAGATGCGAAGGG+AGG | 0.650499 | 4.2:-1446070 | MS.gene62682:CDS |
| TGAGGCAAAGAAGATGCGAA+GGG | 0.652267 | 4.2:-1446073 | MS.gene62682:CDS |
| AAGTGATGCCTGTAAAACAA+TGG | 0.658150 | 4.2:-1447071 | MS.gene62682:CDS |
| TGACGTGGGAATGGAACCGA+CGG | 0.658829 | 4.2:-1449134 | MS.gene62682:CDS |
| AATTGAGCTGGAGGACACAG+AGG | 0.682767 | 4.2:+1446549 | None:intergenic |
| TTGGAGATCATCCACCATGG+AGG | 0.693889 | 4.2:+1447600 | None:intergenic |
| TCCCGACGACAATCCCTGGG+TGG | 0.703158 | 4.2:-1446643 | MS.gene62682:CDS |
| AGCAACAGCTTGTTACTGGG+AGG | 0.709426 | 4.2:-1445945 | MS.gene62682:intron |
| ACTTCTAACAGTATTAATCG+CGG | 0.716319 | 4.2:-1446700 | MS.gene62682:CDS |
| CGTGGGAATGGAACCGACGG+TGG | 0.718391 | 4.2:-1449131 | MS.gene62682:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTCTTACTAATTT+TGG | - | chr4.2:1446321-1446340 | MS.gene62682:CDS | 10.0% |
| !! | AAAAATCATTACAACAATTA+AGG | + | chr4.2:1446578-1446597 | None:intergenic | 15.0% |
| !! | ATTCAAAATAGGAAAAAATA+AGG | + | chr4.2:1447192-1447211 | None:intergenic | 15.0% |
| !! | TGATTAATAAATTATGACAA+AGG | + | chr4.2:1446753-1446772 | None:intergenic | 15.0% |
| !!! | TTATTTTTTCCTATTTTGAA+TGG | - | chr4.2:1447191-1447210 | MS.gene62682:intron | 15.0% |
| !! | AAATTAATATCACCAAACAA+TGG | + | chr4.2:1446433-1446452 | None:intergenic | 20.0% |
| !! | ACAAAAAAGTTACATCATTA+TGG | + | chr4.2:1447522-1447541 | None:intergenic | 20.0% |
| !! | GAATATGGTTCAATAAAATA+TGG | + | chr4.2:1448070-1448089 | None:intergenic | 20.0% |
| !! | TAAAATATGGAAACAGTTAA+AGG | + | chr4.2:1448057-1448076 | None:intergenic | 20.0% |
| !! | TACAAAACCAACAAATAAAT+CGG | + | chr4.2:1446517-1446536 | None:intergenic | 20.0% |
| !! | TTCAGGAAAAATATCAATTA+CGG | - | chr4.2:1448249-1448268 | MS.gene62682:intron | 20.0% |
| !!! | ATTTTCAAGCTAACAAATTA+AGG | + | chr4.2:1446800-1446819 | None:intergenic | 20.0% |
| !!! | ATTTTTTACCCAGTAATTAT+TGG | - | chr4.2:1446592-1446611 | MS.gene62682:CDS | 20.0% |
| !!! | TTTTTCCTGAAAATTGTAAA+AGG | + | chr4.2:1448240-1448259 | None:intergenic | 20.0% |
| ! | AAAAAGATTACTAACCTCAA+TGG | + | chr4.2:1448783-1448802 | None:intergenic | 25.0% |
| ! | ACAAAGAGGAAAACAATAAT+TGG | - | chr4.2:1448603-1448622 | MS.gene62682:intron | 25.0% |
| ! | ACAATTAACTAAGATTGCAA+TGG | + | chr4.2:1448843-1448862 | None:intergenic | 25.0% |
| ! | ACTAAGATTAAAATCCAAAC+AGG | + | chr4.2:1448809-1448828 | None:intergenic | 25.0% |
| ! | AGGAGTAAAATTCTTCTAAA+TGG | - | chr4.2:1448533-1448552 | MS.gene62682:intron | 25.0% |
| ! | ATCTTAGTTAATTGTTGCAA+TGG | - | chr4.2:1448848-1448867 | MS.gene62682:CDS | 25.0% |
| ! | CAACAAAGGATTAAATACAA+AGG | + | chr4.2:1448005-1448024 | None:intergenic | 25.0% |
| ! | CACAGTTAAAAGTAATAATC+TGG | - | chr4.2:1448157-1448176 | MS.gene62682:intron | 25.0% |
| ! | TATTGAACCATATTCTTACA+GGG | - | chr4.2:1448075-1448094 | MS.gene62682:intron | 25.0% |
| ! | TGATCTCCAAAATAAAAATC+AGG | - | chr4.2:1447415-1447434 | MS.gene62682:CDS | 25.0% |
| ! | TTATCCTCTATATCTACTAA+TGG | + | chr4.2:1448662-1448681 | None:intergenic | 25.0% |
| ! | TTATTGAACCATATTCTTAC+AGG | - | chr4.2:1448074-1448093 | MS.gene62682:intron | 25.0% |
| ! | TTTAATATCACATATGTACG+CGG | - | chr4.2:1446457-1446476 | MS.gene62682:CDS | 25.0% |
| !! | GTAAACCTTTTACAATTTTC+AGG | - | chr4.2:1448232-1448251 | MS.gene62682:intron | 25.0% |
| !! | GTAATCTTTTTAAACCTGTT+TGG | - | chr4.2:1448792-1448811 | MS.gene62682:CDS | 25.0% |
| !!! | TAACCATCTGATCTTTTTTT+TGG | + | chr4.2:1446716-1446735 | None:intergenic | 25.0% |
| !!! | TCAATTTTGAAGAATGCTAA+AGG | - | chr4.2:1448470-1448489 | MS.gene62682:intron | 25.0% |
| !!! | TGATGTAACTTTTTTGTACT+TGG | - | chr4.2:1447525-1447544 | MS.gene62682:intron | 25.0% |
| !!! | TTAGCTCCTGATTTTTATTT+TGG | + | chr4.2:1447424-1447443 | None:intergenic | 25.0% |
| AAAAGGTTTACCTTGAGTAA+TGG | + | chr4.2:1448223-1448242 | None:intergenic | 30.0% | |
| AAGAAAGAAAAACTCTCGAT+CGG | - | chr4.2:1447832-1447851 | MS.gene62682:intron | 30.0% | |
| ACTTAAAGACAAAGCAACAA+AGG | + | chr4.2:1448019-1448038 | None:intergenic | 30.0% | |
| ACTTCTAACAGTATTAATCG+CGG | - | chr4.2:1448302-1448321 | MS.gene62682:intron | 30.0% | |
| ATTAAGCGCCAATAATTACT+GGG | + | chr4.2:1446603-1446622 | None:intergenic | 30.0% | |
| CAATAATTGGAAAGGAAGTT+TGG | - | chr4.2:1448616-1448635 | MS.gene62682:intron | 30.0% | |
| CAGAAACTACCATTCAAAAT+AGG | + | chr4.2:1447203-1447222 | None:intergenic | 30.0% | |
| CATAAAAGATTGCAAATACC+TGG | + | chr4.2:1447466-1447485 | None:intergenic | 30.0% | |
| GAACATCATCCTTTCAAATA+AGG | - | chr4.2:1448429-1448448 | MS.gene62682:intron | 30.0% | |
| GAGGAAAACAATAATTGGAA+AGG | - | chr4.2:1448608-1448627 | MS.gene62682:intron | 30.0% | |
| TAGTTTCTGTGTGAAAATAC+CGG | - | chr4.2:1447214-1447233 | MS.gene62682:intron | 30.0% | |
| TGAAAGAACTAAAGACAAAG+AGG | - | chr4.2:1448589-1448608 | MS.gene62682:intron | 30.0% | |
| TGCATTGTTTATAGATCAGA+TGG | - | chr4.2:1446658-1446677 | MS.gene62682:CDS | 30.0% | |
| TTTATAGATCAGATGGTTAC+TGG | - | chr4.2:1446665-1446684 | MS.gene62682:CDS | 30.0% | |
| ! | CTAGTTAAGAGTTTTTGCAT+GGG | - | chr4.2:1447792-1447811 | MS.gene62682:intron | 30.0% |
| ! | GGTACTTCTTTTTCTCTTTT+TGG | - | chr4.2:1449078-1449097 | MS.gene62682:CDS | 30.0% |
| ! | TCTAGTTAAGAGTTTTTGCA+TGG | - | chr4.2:1447791-1447810 | MS.gene62682:intron | 30.0% |
| !!! | CAAAATTTTGTTTTCCTCCT+GGG | + | chr4.2:1447567-1447586 | None:intergenic | 30.0% |
| !!! | CTTGCTTTTTTTCTGAAACT+AGG | - | chr4.2:1449139-1449158 | MS.gene62682:CDS | 30.0% |
| !!! | CTTTTTTACAAGCCATTGTT+TGG | - | chr4.2:1446418-1446437 | MS.gene62682:CDS | 30.0% |
| AAAATCAAGAGTGAAGCAAC+TGG | + | chr4.2:1447759-1447778 | None:intergenic | 35.0% | |
| AAGTGATGCCTGTAAAACAA+TGG | - | chr4.2:1447931-1447950 | MS.gene62682:CDS | 35.0% | |
| ACATCTCTAACGTTTGATAG+AGG | + | chr4.2:1446932-1446951 | None:intergenic | 35.0% | |
| AGAAAGAAAAACTCTCGATC+GGG | - | chr4.2:1447833-1447852 | MS.gene62682:intron | 35.0% | |
| AGCAAATCATACAAAACTCC+TGG | + | chr4.2:1448689-1448708 | None:intergenic | 35.0% | |
| AGCATTCTTCAAAATTGAGC+TGG | + | chr4.2:1448468-1448487 | None:intergenic | 35.0% | |
| AGGGAAAATGTGTTAGCAAT+GGG | - | chr4.2:1448333-1448352 | MS.gene62682:intron | 35.0% | |
| ATAAGTTCTGCCATTACTCA+AGG | - | chr4.2:1448210-1448229 | MS.gene62682:intron | 35.0% | |
| ATATCCAAACCCAACTCTAA+TGG | - | chr4.2:1448392-1448411 | MS.gene62682:intron | 35.0% | |
| ATGTACGCGGTAATTATGTT+TGG | - | chr4.2:1446470-1446489 | MS.gene62682:CDS | 35.0% | |
| ATTCTTCAAAATTGAGCTGG+AGG | + | chr4.2:1448465-1448484 | None:intergenic | 35.0% | |
| CAACCTGCATGTATTAACTT+AGG | - | chr4.2:1448185-1448204 | MS.gene62682:intron | 35.0% | |
| CCAAAATTATCATGCCGTTA+CGG | - | chr4.2:1446285-1446304 | MS.gene62682:CDS | 35.0% | |
| CCACCAAAAAAAAGATCAGA+TGG | - | chr4.2:1446710-1446729 | MS.gene62682:CDS | 35.0% | |
| CTTCCTTAGATTTCGTAAGA+CGG | + | chr4.2:1447334-1447353 | None:intergenic | 35.0% | |
| CTTGCCATTAGTAGATATAG+AGG | - | chr4.2:1448655-1448674 | MS.gene62682:intron | 35.0% | |
| GATATAGAGGATAATGTTCC+AGG | - | chr4.2:1448668-1448687 | MS.gene62682:intron | 35.0% | |
| GATTAAGCGCCAATAATTAC+TGG | + | chr4.2:1446604-1446623 | None:intergenic | 35.0% | |
| GTAAACACATCACAACATGA+AGG | + | chr4.2:1446968-1446987 | None:intergenic | 35.0% | |
| GTTCTATGTGTTTGCAGATA+AGG | - | chr4.2:1446134-1446153 | MS.gene62682:intron | 35.0% | |
| TAGAGAAAAAGCTGTTGAAG+AGG | - | chr4.2:1446215-1446234 | MS.gene62682:intron | 35.0% | |
| TATCCAAACCCAACTCTAAT+GGG | - | chr4.2:1448393-1448412 | MS.gene62682:intron | 35.0% | |
| TATGTTTGGGCTGAATTACA+GGG | - | chr4.2:1446484-1446503 | MS.gene62682:CDS | 35.0% | |
| TCAAGATGATAACAGAGCTT+TGG | - | chr4.2:1447307-1447326 | MS.gene62682:CDS | 35.0% | |
| TCTACTAATGGCAAGTCATT+TGG | + | chr4.2:1448650-1448669 | None:intergenic | 35.0% | |
| TCTCCTAAGTTAATACATGC+AGG | + | chr4.2:1448191-1448210 | None:intergenic | 35.0% | |
| TGTACGCGGTAATTATGTTT+GGG | - | chr4.2:1446471-1446490 | MS.gene62682:CDS | 35.0% | |
| TTATGTTTGGGCTGAATTAC+AGG | - | chr4.2:1446483-1446502 | MS.gene62682:CDS | 35.0% | |
| ! | CCAGGAGGAAAACAAAATTT+TGG | - | chr4.2:1447565-1447584 | MS.gene62682:CDS | 35.0% |
| ! | CTAGAAAGCAAAGTATTTCC+TGG | - | chr4.2:1446904-1446923 | MS.gene62682:CDS | 35.0% |
| ! | GTGTGAAAATACCGGTTAAA+GGG | - | chr4.2:1447222-1447241 | MS.gene62682:intron | 35.0% |
| ! | TGGCATCGTCTTTATCTTTT+AGG | + | chr4.2:1448763-1448782 | None:intergenic | 35.0% |
| ! | TGTGTGAAAATACCGGTTAA+AGG | - | chr4.2:1447221-1447240 | MS.gene62682:intron | 35.0% |
| !! | CTTTAGTTCTTTCAGAAGAC+TGG | + | chr4.2:1448583-1448602 | None:intergenic | 35.0% |
| !! | TCTTCAAGCCATTGTTTTAC+AGG | + | chr4.2:1447942-1447961 | None:intergenic | 35.0% |
| !! | TGATGAAAAGAAAGCATCGA+TGG | - | chr4.2:1447031-1447050 | MS.gene62682:intron | 35.0% |
| !!! | CCAAAATTTTGTTTTCCTCC+TGG | + | chr4.2:1447568-1447587 | None:intergenic | 35.0% |
| !!! | CCATCTGATCTTTTTTTTGG+TGG | + | chr4.2:1446713-1446732 | None:intergenic | 35.0% |
| !!! | TCTGATCTTTTTTTTGGTGG+TGG | + | chr4.2:1446710-1446729 | None:intergenic | 35.0% |
| AAACAGAGTAGCTGTAGTAG+TGG | - | chr4.2:1447881-1447900 | MS.gene62682:CDS | 40.0% | |
| AAACCCATTAGAGTTGGGTT+TGG | + | chr4.2:1448399-1448418 | None:intergenic | 40.0% | |
| AGATAAAGACGATGCCATTG+AGG | - | chr4.2:1448766-1448785 | MS.gene62682:intron | 40.0% | |
| AGTCAGAAACCCATTAGAGT+TGG | + | chr4.2:1448405-1448424 | None:intergenic | 40.0% | |
| ATTATCATGCCGTTACGGTT+AGG | - | chr4.2:1446290-1446309 | MS.gene62682:CDS | 40.0% | |
| CATCTCTCCCTGTAAGAATA+TGG | + | chr4.2:1448085-1448104 | None:intergenic | 40.0% | |
| CCAGATGCTAGCAAAAAAAG+TGG | - | chr4.2:1448881-1448900 | MS.gene62682:intron | 40.0% | |
| CGACTTGAGAATGATGTTAG+AGG | - | chr4.2:1446043-1446062 | MS.gene62682:CDS | 40.0% | |
| CTGTAGTAGTGGCTAATGAA+TGG | - | chr4.2:1447892-1447911 | MS.gene62682:CDS | 40.0% | |
| GAAACAGATTGAGATTTGCC+AGG | - | chr4.2:1447445-1447464 | MS.gene62682:intron | 40.0% | |
| GAAGAATTGTCGAAGGTAGA+TGG | - | chr4.2:1446856-1446875 | MS.gene62682:intron | 40.0% | |
| GAGGGAAAATGTGTTAGCAA+TGG | - | chr4.2:1448332-1448351 | MS.gene62682:intron | 40.0% | |
| GCAATCTGCAAGAAACAAGT+CGG | + | chr4.2:1447281-1447300 | None:intergenic | 40.0% | |
| GCTTACTGAAGAATTGTCGA+AGG | - | chr4.2:1446849-1446868 | MS.gene62682:intron | 40.0% | |
| GGATACATTGACCAAAGCTA+TGG | - | chr4.2:1448902-1448921 | MS.gene62682:intron | 40.0% | |
| GTCAGAAACCCATTAGAGTT+GGG | + | chr4.2:1448404-1448423 | None:intergenic | 40.0% | |
| TCGCAAAATCCTAACCGTAA+CGG | + | chr4.2:1446302-1446321 | None:intergenic | 40.0% | |
| TTTCCCTTCCTTAAACGATC+CGG | + | chr4.2:1445921-1445940 | None:intergenic | 40.0% | |
| TTTCCGGATCGTTTAAGGAA+GGG | - | chr4.2:1445915-1445934 | MS.gene62682:intron | 40.0% | |
| ! | CACAGAGGACCTTATTTGAA+AGG | + | chr4.2:1448441-1448460 | None:intergenic | 40.0% |
| ! | CATGAACTTGCTTCATGGTT+CGG | - | chr4.2:1445997-1446016 | MS.gene62682:CDS | 40.0% |
| ! | CCGTAACGGCATGATAATTT+TGG | + | chr4.2:1446288-1446307 | None:intergenic | 40.0% |
| ! | GAGTTCATGAACTTGCTTCA+TGG | - | chr4.2:1445992-1446011 | MS.gene62682:CDS | 40.0% |
| ! | GCATCTAAGTCTTTTGATGG+TGG | - | chr4.2:1448494-1448513 | MS.gene62682:intron | 40.0% |
| !! | ATTTTGGAGATCATCCACCA+TGG | + | chr4.2:1447408-1447427 | None:intergenic | 40.0% |
| !! | CATGGGCTGTTTGACATTTT+AGG | - | chr4.2:1447809-1447828 | MS.gene62682:intron | 40.0% |
| !! | GTATGATTTGCTGCAGAAAG+AGG | - | chr4.2:1448697-1448716 | MS.gene62682:intron | 40.0% |
| !! | TACTCTGTTTGCTGTTACCT+TGG | + | chr4.2:1447871-1447890 | None:intergenic | 40.0% |
| !!! | ATCTTTTTTTTGGTGGTGGC+CGG | + | chr4.2:1446706-1446725 | None:intergenic | 40.0% |
| !!! | CCACTTTTTTTGCTAGCATC+TGG | + | chr4.2:1448884-1448903 | None:intergenic | 40.0% |
| AAAAACTCTCGATCGGGAGT+TGG | - | chr4.2:1447839-1447858 | MS.gene62682:intron | 45.0% | |
| AAAAGCTCACCCAAACTGTC+AGG | - | chr4.2:1447621-1447640 | MS.gene62682:CDS | 45.0% | |
| AAAGCTCACCCAAACTGTCA+GGG | - | chr4.2:1447622-1447641 | MS.gene62682:CDS | 45.0% | |
| AACTCATCCGCATCCAAACT+AGG | + | chr4.2:1445977-1445996 | None:intergenic | 45.0% | |
| AGAAAGAGGTCCTAGTGTTG+AGG | - | chr4.2:1448711-1448730 | MS.gene62682:intron | 45.0% | |
| AGATCAGATGGTTACTGGTC+CGG | - | chr4.2:1446670-1446689 | MS.gene62682:CDS | 45.0% | |
| AGCTGAAGCTACTCTTCGAA+GGG | - | chr4.2:1447067-1447086 | MS.gene62682:CDS | 45.0% | |
| AGCTTGAGTTCAGCCTCTAA+AGG | + | chr4.2:1447146-1447165 | None:intergenic | 45.0% | |
| ATATGCTATCTGTTCCACCC+AGG | + | chr4.2:1448376-1448395 | None:intergenic | 45.0% | |
| ATTAATCGCGGCACTTCAGA+GGG | - | chr4.2:1448314-1448333 | MS.gene62682:intron | 45.0% | |
| CAAGAGTGAAGCAACTGGAA+AGG | + | chr4.2:1447754-1447773 | None:intergenic | 45.0% | |
| CAGAATGCATAGACTGAAGG+TGG | - | chr4.2:1447589-1447608 | MS.gene62682:CDS | 45.0% | |
| CAGCACTTCTTGAAGCTGAA+AGG | - | chr4.2:1447354-1447373 | MS.gene62682:CDS | 45.0% | |
| CGATTAAGCTCCAGTTTCAC+TGG | + | chr4.2:1446025-1446044 | None:intergenic | 45.0% | |
| CTTCACATTGCTGAAACGCT+TGG | + | chr4.2:1449018-1449037 | None:intergenic | 45.0% | |
| GACCAAAGCTATGGAAGTTG+AGG | - | chr4.2:1448911-1448930 | MS.gene62682:intron | 45.0% | |
| GATGAGACCTAGTTTGGATG+CGG | - | chr4.2:1445967-1445986 | MS.gene62682:CDS | 45.0% | |
| GCATTCGATGAGACCTAGTT+TGG | - | chr4.2:1445961-1445980 | MS.gene62682:CDS | 45.0% | |
| GCTAGAATGGCTTCTATAGG+AGG | + | chr4.2:1447122-1447141 | None:intergenic | 45.0% | |
| GGACAGAATGCATAGACTGA+AGG | - | chr4.2:1447586-1447605 | MS.gene62682:CDS | 45.0% | |
| GGACCGTCTTACGAAATCTA+AGG | - | chr4.2:1447328-1447347 | MS.gene62682:CDS | 45.0% | |
| GGAGCTAGAATGGCTTCTAT+AGG | + | chr4.2:1447125-1447144 | None:intergenic | 45.0% | |
| GTTTCCGGATCGTTTAAGGA+AGG | - | chr4.2:1445914-1445933 | MS.gene62682:intron | 45.0% | |
| TAACGTTTGATAGAGGCTCC+AGG | + | chr4.2:1446925-1446944 | None:intergenic | 45.0% | |
| TATGCTATCTGTTCCACCCA+GGG | + | chr4.2:1448375-1448394 | None:intergenic | 45.0% | |
| TATTAATCGCGGCACTTCAG+AGG | - | chr4.2:1448313-1448332 | MS.gene62682:intron | 45.0% | |
| TGAAGCTGAAAGGACTGTTC+AGG | - | chr4.2:1447364-1447383 | MS.gene62682:CDS | 45.0% | |
| TGAGGCAAAGAAGATGCGAA+GGG | - | chr4.2:1448929-1448948 | MS.gene62682:intron | 45.0% | |
| TGCCTCAACTTCCATAGCTT+TGG | + | chr4.2:1448916-1448935 | None:intergenic | 45.0% | |
| TGGTTAAACGACGAACTTGG+TGG | + | chr4.2:1448563-1448582 | None:intergenic | 45.0% | |
| TTGAGGCAAAGAAGATGCGA+AGG | - | chr4.2:1448928-1448947 | MS.gene62682:intron | 45.0% | |
| ! | AGCCTCTAAAGGAGCTAGAA+TGG | + | chr4.2:1447135-1447154 | None:intergenic | 45.0% |
| ! | CCAACAAATAAATCGGCTCC+CGG | + | chr4.2:1446510-1446529 | None:intergenic | 45.0% |
| ! | CTCTAGTTCCCTGACAGTTT+GGG | + | chr4.2:1447633-1447652 | None:intergenic | 45.0% |
| ! | GACTGGTTAAACGACGAACT+TGG | + | chr4.2:1448566-1448585 | None:intergenic | 45.0% |
| ! | GGCGCATCTAAGTCTTTTGA+TGG | - | chr4.2:1448491-1448510 | MS.gene62682:intron | 45.0% |
| ! | GTTGCTGAGCACTGTTCATA+GGG | + | chr4.2:1449043-1449062 | None:intergenic | 45.0% |
| ! | TGTTGCTGAGCACTGTTCAT+AGG | + | chr4.2:1449044-1449063 | None:intergenic | 45.0% |
| !! | AGCCATTCTAGCTCCTTTAG+AGG | - | chr4.2:1447130-1447149 | MS.gene62682:CDS | 45.0% |
| !! | CTCAGCAACAGCTTGTTACT+GGG | - | chr4.2:1449054-1449073 | MS.gene62682:CDS | 45.0% |
| !!! | AGTCTTTTGATGGTGGCTCT+AGG | - | chr4.2:1448501-1448520 | MS.gene62682:intron | 45.0% |
| !!! | TCTTTTTTTTGGTGGTGGCC+GGG | + | chr4.2:1446705-1446724 | None:intergenic | 45.0% |
| !!! | TTTTGTTTTCCTCCTGGGAG+AGG | + | chr4.2:1447562-1447581 | None:intergenic | 45.0% |
| !! | AGAAAATAAATAAAAAATTA+AGG | + | chr4.2:1446547-1446566 | None:intergenic | 5.0% |
| AACGATCCGGAAACCGTCAA+CGG | + | chr4.2:1445908-1445927 | None:intergenic | 50.0% | |
| AACTGTCAGGGAACTAGAGG+AGG | - | chr4.2:1447634-1447653 | MS.gene62682:CDS | 50.0% | |
| AATTGAGCTGGAGGACACAG+AGG | + | chr4.2:1448456-1448475 | None:intergenic | 50.0% | |
| AGGGAGAGATGCAGCAACTT+CGG | - | chr4.2:1448094-1448113 | MS.gene62682:intron | 50.0% | |
| CAGCTGAAGCTACTCTTCGA+AGG | - | chr4.2:1447066-1447085 | MS.gene62682:CDS | 50.0% | |
| CCAAACTGTCAGGGAACTAG+AGG | - | chr4.2:1447631-1447650 | MS.gene62682:CDS | 50.0% | |
| GACCAGCTTTCCTCAACACT+AGG | + | chr4.2:1448724-1448743 | None:intergenic | 50.0% | |
| GACGGTTTCCGGATCGTTTA+AGG | - | chr4.2:1445910-1445929 | MS.gene62682:intron | 50.0% | |
| GATCAGATGGTTACTGGTCC+GGG | - | chr4.2:1446671-1446690 | MS.gene62682:CDS | 50.0% | |
| TGAAGAGCGACGATTCTTGC+AGG | - | chr4.2:1447956-1447975 | MS.gene62682:CDS | 50.0% | |
| TTGGAGATCATCCACCATGG+AGG | + | chr4.2:1447405-1447424 | None:intergenic | 50.0% | |
| TTTGGGCTGAATTACAGGGC+CGG | - | chr4.2:1446488-1446507 | MS.gene62682:CDS | 50.0% | |
| ! | AGGCTGAACTCAAGCTTGCT+CGG | - | chr4.2:1447150-1447169 | MS.gene62682:CDS | 50.0% |
| ! | ATTTTCCGGTGACGTGGGAA+TGG | - | chr4.2:1445859-1445878 | MS.gene62682:intron | 50.0% |
| ! | CCGGGAGCCGATTTATTTGT+TGG | - | chr4.2:1446507-1446526 | MS.gene62682:CDS | 50.0% |
| ! | CCTCTAGTTCCCTGACAGTT+TGG | + | chr4.2:1447634-1447653 | None:intergenic | 50.0% |
| ! | GCTGAATTTTCCGGTGACGT+GGG | - | chr4.2:1445854-1445873 | MS.gene62682:intron | 50.0% |
| ! | GTCCTAGTGTTGAGGAAAGC+TGG | - | chr4.2:1448719-1448738 | MS.gene62682:intron | 50.0% |
| ! | TGGTTCGGATCCAGTGAAAC+TGG | - | chr4.2:1446012-1446031 | MS.gene62682:CDS | 50.0% |
| !! | AAGGACTGTTCAGGTTGCCT+TGG | - | chr4.2:1447373-1447392 | MS.gene62682:CDS | 50.0% |
| !! | AGCAACAGCTTGTTACTGGG+AGG | - | chr4.2:1449057-1449076 | MS.gene62682:CDS | 50.0% |
| !! | ATACCGGTTAAAGGGCACTG+AGG | - | chr4.2:1447230-1447249 | MS.gene62682:intron | 50.0% |
| !! | GCTCAGCAACAGCTTGTTAC+TGG | - | chr4.2:1449053-1449072 | MS.gene62682:CDS | 50.0% |
| AAGGGTCCATGCTGCTCAGA+AGG | - | chr4.2:1447085-1447104 | MS.gene62682:CDS | 55.0% | |
| AGAGCGACGATTCTTGCAGG+TGG | - | chr4.2:1447959-1447978 | MS.gene62682:CDS | 55.0% | |
| AGCTGTCATGGAGAAGGAGG+TGG | - | chr4.2:1448956-1448975 | MS.gene62682:intron | 55.0% | |
| ATCATCCACCATGGAGGCCT+TGG | + | chr4.2:1447399-1447418 | None:intergenic | 55.0% | |
| CAGCCTCAGTGCCCTTTAAC+CGG | + | chr4.2:1447236-1447255 | None:intergenic | 55.0% | |
| CGTCATCCTTCTGAGCAGCA+TGG | + | chr4.2:1447094-1447113 | None:intergenic | 55.0% | |
| CTGGTCCGGGATTCAAATCC+CGG | - | chr4.2:1446684-1446703 | MS.gene62682:CDS | 55.0% | |
| GCATAGACTGAAGGTGGCAG+AGG | - | chr4.2:1447595-1447614 | MS.gene62682:CDS | 55.0% | |
| GGAGGTAGCTGTCATGGAGA+AGG | - | chr4.2:1448950-1448969 | MS.gene62682:intron | 55.0% | |
| GGCAAAGAAGATGCGAAGGG+AGG | - | chr4.2:1448932-1448951 | MS.gene62682:intron | 55.0% | |
| GGGAGAGATGCAGCAACTTC+GGG | - | chr4.2:1448095-1448114 | MS.gene62682:intron | 55.0% | |
| GGTAGCTGTCATGGAGAAGG+AGG | - | chr4.2:1448953-1448972 | MS.gene62682:intron | 55.0% | |
| GTATCACCATCACCTCTCCC+AGG | - | chr4.2:1447547-1447566 | MS.gene62682:intron | 55.0% | |
| TGACGTGGGAATGGAACCGA+CGG | - | chr4.2:1445868-1445887 | MS.gene62682:intron | 55.0% | |
| TTCCACCCAGGGATTGTCGT+CGG | + | chr4.2:1448364-1448383 | None:intergenic | 55.0% | |
| TTGGGCTGAATTACAGGGCC+GGG | - | chr4.2:1446489-1446508 | MS.gene62682:CDS | 55.0% | |
| TTTCCTCCTGGGAGAGGTGA+TGG | + | chr4.2:1447556-1447575 | None:intergenic | 55.0% | |
| ! | ACTCAAGCTTGCTCGGCAAG+AGG | - | chr4.2:1447157-1447176 | MS.gene62682:CDS | 55.0% |
| ! | GGCTGAATTTTCCGGTGACG+TGG | - | chr4.2:1445853-1445872 | MS.gene62682:intron | 55.0% |
| !! | GTGGCTCTAGGTCACTGGAA+AGG | - | chr4.2:1448513-1448532 | MS.gene62682:intron | 55.0% |
| !! | TGATGGTGGCTCTAGGTCAC+TGG | - | chr4.2:1448508-1448527 | MS.gene62682:intron | 55.0% |
| !! | TGTTCAGGTTGCCTTGGCCA+AGG | - | chr4.2:1447379-1447398 | MS.gene62682:CDS | 55.0% |
| CCTTCCCGACGACAATCCCT+GGG | - | chr4.2:1448356-1448375 | MS.gene62682:intron | 60.0% | |
| CGGTTCCATTCCCACGTCAC+CGG | + | chr4.2:1445867-1445886 | None:intergenic | 60.0% | |
| CTAGAGGAGGCTGTCCTTGC+AGG | - | chr4.2:1447647-1447666 | MS.gene62682:CDS | 60.0% | |
| GCGAAGGGAGGTAGCTGTCA+TGG | - | chr4.2:1448944-1448963 | MS.gene62682:intron | 60.0% | |
| GGTGGCCGGGATTTGAATCC+CGG | + | chr4.2:1446692-1446711 | None:intergenic | 60.0% | |
| TCACCATCACCTCTCCCAGG+AGG | - | chr4.2:1447550-1447569 | MS.gene62682:intron | 60.0% | |
| TCCACCCAGGGATTGTCGTC+GGG | + | chr4.2:1448363-1448382 | None:intergenic | 60.0% | |
| !! | CGGTTAAAGGGCACTGAGGC+TGG | - | chr4.2:1447234-1447253 | MS.gene62682:intron | 60.0% |
| CACCATGGAGGCCTTGGCCA+AGG | + | chr4.2:1447393-1447412 | None:intergenic | 65.0% | |
| CCCAGGGATTGTCGTCGGGA+AGG | + | chr4.2:1448359-1448378 | None:intergenic | 65.0% | |
| CCGGAAACCGTCAACGGCAC+CGG | + | chr4.2:1445902-1445921 | None:intergenic | 65.0% | |
| CGTGGGAATGGAACCGACGG+TGG | - | chr4.2:1445871-1445890 | MS.gene62682:intron | 65.0% | |
| CTTGGCCAAGGCCTCCATGG+TGG | - | chr4.2:1447391-1447410 | MS.gene62682:CDS | 65.0% | |
| GAGGAGGCTGTCCTTGCAGG+CGG | - | chr4.2:1447650-1447669 | MS.gene62682:CDS | 65.0% | |
| GCCTTCCCGACGACAATCCC+TGG | - | chr4.2:1448355-1448374 | MS.gene62682:intron | 65.0% | |
| TCCCGACGACAATCCCTGGG+TGG | - | chr4.2:1448359-1448378 | MS.gene62682:intron | 65.0% | |
| TGCCTTGGCCAAGGCCTCCA+TGG | - | chr4.2:1447388-1447407 | MS.gene62682:CDS | 65.0% | |
| TTGCAGCAGCACCGCCTGCA+AGG | + | chr4.2:1447664-1447683 | None:intergenic | 65.0% | |
| !! | CCGGTGCCGTTGACGGTTTC+CGG | - | chr4.2:1445899-1445918 | MS.gene62682:intron | 65.0% |
| !! | TCGGGAGTTGGCTCGTGCCA+AGG | - | chr4.2:1447851-1447870 | MS.gene62682:CDS | 65.0% |
| GGAGGTGGCTGCAATGCGCG+TGG | - | chr4.2:1448971-1448990 | MS.gene62682:CDS | 70.0% | |
| ! | GGAACCGACGGTGGTGACGC+CGG | - | chr4.2:1445880-1445899 | MS.gene62682:intron | 70.0% |
| !! | GGTGACGCCGGTGCCGTTGA+CGG | - | chr4.2:1445892-1445911 | MS.gene62682:intron | 70.0% |
| !! | GGCACCGGCGTCACCACCGT+CGG | + | chr4.2:1445887-1445906 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 1445851 | 1449173 | 1445851 | ID=MS.gene62682 |
| chr4.2 | mRNA | 1445851 | 1449173 | 1445851 | ID=MS.gene62682.t1;Parent=MS.gene62682 |
| chr4.2 | exon | 1448960 | 1449173 | 1448960 | ID=MS.gene62682.t1.exon1;Parent=MS.gene62682.t1 |
| chr4.2 | CDS | 1448960 | 1449173 | 1448960 | ID=cds.MS.gene62682.t1;Parent=MS.gene62682.t1 |
| chr4.2 | exon | 1448788 | 1448873 | 1448788 | ID=MS.gene62682.t1.exon2;Parent=MS.gene62682.t1 |
| chr4.2 | CDS | 1448788 | 1448873 | 1448788 | ID=cds.MS.gene62682.t1;Parent=MS.gene62682.t1 |
| chr4.2 | exon | 1448109 | 1448174 | 1448109 | ID=MS.gene62682.t1.exon3;Parent=MS.gene62682.t1 |
| chr4.2 | CDS | 1448109 | 1448174 | 1448109 | ID=cds.MS.gene62682.t1;Parent=MS.gene62682.t1 |
| chr4.2 | exon | 1447846 | 1448016 | 1447846 | ID=MS.gene62682.t1.exon4;Parent=MS.gene62682.t1 |
| chr4.2 | CDS | 1447846 | 1448016 | 1447846 | ID=cds.MS.gene62682.t1;Parent=MS.gene62682.t1 |
| chr4.2 | exon | 1447558 | 1447728 | 1447558 | ID=MS.gene62682.t1.exon5;Parent=MS.gene62682.t1 |
| chr4.2 | CDS | 1447558 | 1447728 | 1447558 | ID=cds.MS.gene62682.t1;Parent=MS.gene62682.t1 |
| chr4.2 | exon | 1447300 | 1447455 | 1447300 | ID=MS.gene62682.t1.exon6;Parent=MS.gene62682.t1 |
| chr4.2 | CDS | 1447300 | 1447455 | 1447300 | ID=cds.MS.gene62682.t1;Parent=MS.gene62682.t1 |
| chr4.2 | exon | 1447047 | 1447193 | 1447047 | ID=MS.gene62682.t1.exon7;Parent=MS.gene62682.t1 |
| chr4.2 | CDS | 1447047 | 1447193 | 1447047 | ID=cds.MS.gene62682.t1;Parent=MS.gene62682.t1 |
| chr4.2 | exon | 1446857 | 1446928 | 1446857 | ID=MS.gene62682.t1.exon8;Parent=MS.gene62682.t1 |
| chr4.2 | CDS | 1446857 | 1446928 | 1446857 | ID=cds.MS.gene62682.t1;Parent=MS.gene62682.t1 |
| chr4.2 | exon | 1446237 | 1446770 | 1446237 | ID=MS.gene62682.t1.exon9;Parent=MS.gene62682.t1 |
| chr4.2 | CDS | 1446237 | 1446770 | 1446237 | ID=cds.MS.gene62682.t1;Parent=MS.gene62682.t1 |
| chr4.2 | exon | 1445946 | 1446139 | 1445946 | ID=MS.gene62682.t1.exon10;Parent=MS.gene62682.t1 |
| chr4.2 | CDS | 1445946 | 1446139 | 1445946 | ID=cds.MS.gene62682.t1;Parent=MS.gene62682.t1 |
| chr4.2 | exon | 1445851 | 1445863 | 1445851 | ID=MS.gene62682.t1.exon11;Parent=MS.gene62682.t1 |
| chr4.2 | CDS | 1445851 | 1445863 | 1445851 | ID=cds.MS.gene62682.t1;Parent=MS.gene62682.t1 |
| Gene Sequence |
| Protein sequence |
