Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056469.t1 | XP_013446194.1 | 94.5 | 399 | 19 | 1 | 1 | 399 | 1 | 396 | 4.40E-203 | 717.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056469.t1 | Q9SX33 | 68.1 | 395 | 111 | 2 | 5 | 399 | 9 | 388 | 1.5e-154 | 547.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056469.t1 | A0A072TSN7 | 94.5 | 399 | 19 | 1 | 1 | 399 | 1 | 396 | 3.2e-203 | 717.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056468 | MS.gene056469 | 0.938519 | 5.89E-99 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056469.t1 | MTR_8g069920 | 94.236 | 399 | 20 | 1 | 1 | 399 | 1 | 396 | 0.0 | 761 |
| MS.gene056469.t1 | MTR_3g037330 | 74.430 | 395 | 88 | 1 | 5 | 399 | 2 | 383 | 0.0 | 606 |
| MS.gene056469.t1 | MTR_0021s0360 | 72.843 | 394 | 90 | 3 | 8 | 399 | 4 | 382 | 0.0 | 592 |
| MS.gene056469.t1 | MTR_4g112430 | 62.500 | 400 | 135 | 2 | 1 | 399 | 1 | 386 | 1.84e-180 | 536 |
| MS.gene056469.t1 | MTR_3g037330 | 76.129 | 310 | 67 | 1 | 97 | 399 | 4 | 313 | 2.34e-164 | 491 |
| MS.gene056469.t1 | MTR_6g006910 | 60.150 | 399 | 142 | 4 | 2 | 399 | 3 | 385 | 7.93e-164 | 492 |
| MS.gene056469.t1 | MTR_2g099690 | 50.510 | 392 | 176 | 3 | 8 | 399 | 10 | 383 | 3.37e-134 | 407 |
| MS.gene056469.t1 | MTR_2g099690 | 50.510 | 392 | 176 | 3 | 8 | 399 | 10 | 383 | 8.34e-134 | 407 |
| MS.gene056469.t1 | MTR_2g099690 | 50.510 | 392 | 176 | 3 | 8 | 399 | 10 | 383 | 4.19e-131 | 407 |
| MS.gene056469.t1 | MTR_8g062150 | 43.014 | 365 | 179 | 5 | 39 | 399 | 44 | 383 | 2.87e-87 | 277 |
| MS.gene056469.t1 | MTR_5g037210 | 45.672 | 335 | 168 | 4 | 70 | 399 | 39 | 364 | 5.01e-87 | 288 |
| MS.gene056469.t1 | MTR_3g007240 | 35.000 | 340 | 213 | 3 | 70 | 405 | 137 | 472 | 4.72e-62 | 216 |
| MS.gene056469.t1 | MTR_3g007240 | 35.000 | 340 | 213 | 3 | 70 | 405 | 137 | 472 | 1.26e-61 | 216 |
| MS.gene056469.t1 | MTR_8g044210 | 36.657 | 341 | 207 | 5 | 70 | 405 | 86 | 422 | 3.03e-61 | 215 |
| MS.gene056469.t1 | MTR_7g073480 | 36.443 | 343 | 208 | 7 | 70 | 405 | 159 | 498 | 2.40e-59 | 209 |
| MS.gene056469.t1 | MTR_2g090610 | 29.240 | 342 | 223 | 7 | 70 | 405 | 17 | 345 | 1.94e-36 | 142 |
| MS.gene056469.t1 | MTR_2g090610 | 29.240 | 342 | 223 | 7 | 70 | 405 | 17 | 345 | 2.12e-36 | 142 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056469.t1 | AT1G68710 | 67.742 | 403 | 111 | 3 | 1 | 399 | 1 | 388 | 0.0 | 570 |
| MS.gene056469.t1 | AT1G68710 | 67.742 | 403 | 111 | 3 | 1 | 399 | 1 | 388 | 0.0 | 569 |
| MS.gene056469.t1 | AT1G68710 | 67.742 | 403 | 111 | 3 | 1 | 399 | 1 | 388 | 0.0 | 569 |
| MS.gene056469.t1 | AT1G26130 | 65.163 | 399 | 116 | 3 | 5 | 399 | 9 | 388 | 0.0 | 549 |
| MS.gene056469.t1 | AT1G26130 | 65.163 | 399 | 116 | 3 | 5 | 399 | 9 | 388 | 0.0 | 548 |
| MS.gene056469.t1 | AT1G26130 | 65.163 | 399 | 116 | 3 | 5 | 399 | 9 | 388 | 0.0 | 548 |
| MS.gene056469.t1 | AT1G26130 | 65.163 | 399 | 116 | 3 | 5 | 399 | 9 | 388 | 0.0 | 548 |
| MS.gene056469.t1 | AT3G25610 | 66.158 | 393 | 116 | 4 | 9 | 399 | 11 | 388 | 0.0 | 545 |
| MS.gene056469.t1 | AT1G13210 | 64.428 | 402 | 125 | 5 | 1 | 399 | 1 | 387 | 1.23e-179 | 533 |
| MS.gene056469.t1 | AT3G27870 | 61.000 | 400 | 137 | 4 | 1 | 399 | 1 | 382 | 8.51e-175 | 515 |
| MS.gene056469.t1 | AT3G27870 | 61.000 | 400 | 137 | 4 | 1 | 399 | 1 | 382 | 1.68e-172 | 514 |
| MS.gene056469.t1 | AT1G72700 | 52.381 | 399 | 171 | 4 | 2 | 399 | 3 | 383 | 3.26e-137 | 423 |
| MS.gene056469.t1 | AT1G72700 | 52.381 | 399 | 171 | 4 | 2 | 399 | 3 | 383 | 3.26e-137 | 423 |
| MS.gene056469.t1 | AT1G72700 | 52.381 | 399 | 171 | 4 | 2 | 399 | 3 | 383 | 3.26e-137 | 423 |
| MS.gene056469.t1 | AT3G13900 | 51.795 | 390 | 167 | 5 | 12 | 399 | 13 | 383 | 3.34e-136 | 414 |
| MS.gene056469.t1 | AT1G54280 | 52.525 | 396 | 168 | 5 | 12 | 405 | 13 | 390 | 3.48e-136 | 421 |
| MS.gene056469.t1 | AT1G54280 | 52.525 | 396 | 168 | 5 | 12 | 405 | 13 | 390 | 3.48e-136 | 421 |
| MS.gene056469.t1 | AT1G54280 | 52.525 | 396 | 168 | 5 | 12 | 405 | 13 | 390 | 3.48e-136 | 421 |
| MS.gene056469.t1 | AT3G13900 | 51.795 | 390 | 167 | 5 | 12 | 399 | 13 | 383 | 1.62e-135 | 414 |
| MS.gene056469.t1 | AT3G13900 | 51.795 | 390 | 167 | 5 | 12 | 399 | 13 | 383 | 1.42e-133 | 414 |
| MS.gene056469.t1 | AT1G17500 | 50.627 | 399 | 178 | 3 | 2 | 399 | 3 | 383 | 1.04e-130 | 406 |
| MS.gene056469.t1 | AT1G17500 | 50.627 | 399 | 178 | 3 | 2 | 399 | 3 | 383 | 1.04e-130 | 406 |
| MS.gene056469.t1 | AT1G59820 | 41.779 | 371 | 189 | 5 | 29 | 399 | 27 | 370 | 6.08e-87 | 288 |
| MS.gene056469.t1 | AT3G27870 | 64.948 | 194 | 64 | 2 | 207 | 399 | 1 | 191 | 5.17e-84 | 277 |
| MS.gene056469.t1 | AT5G04930 | 34.294 | 347 | 208 | 5 | 70 | 405 | 84 | 421 | 1.26e-59 | 210 |
| MS.gene056469.t1 | AT5G44240 | 28.399 | 331 | 218 | 7 | 71 | 395 | 18 | 335 | 4.99e-34 | 135 |
| MS.gene056469.t1 | AT5G44240 | 28.399 | 331 | 218 | 7 | 71 | 395 | 50 | 367 | 5.98e-34 | 135 |
Find 69 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCCTCTTGTTGTTGTTAT+TGG | 0.033009 | 8.3:+32638536 | MS.gene056469:CDS |
| GCAGCAGCGGCCGGTCTTTC+TGG | 0.118823 | 8.3:-32640191 | None:intergenic |
| CGGCGAAAAGATGGTATTTA+AGG | 0.254679 | 8.3:+32640141 | MS.gene056469:CDS |
| TTGACAGCCTTAATGTTATA+TGG | 0.270443 | 8.3:+32640227 | MS.gene056469:CDS |
| GATGGAGATCATTCACAAAT+TGG | 0.303669 | 8.3:+32638245 | MS.gene056469:CDS |
| TGTCTCACCGTCCAAGTTCA+TGG | 0.336386 | 8.3:-32639715 | None:intergenic |
| GTTAAAGTTCATAAAGTTGA+TGG | 0.354361 | 8.3:+32639561 | MS.gene056469:CDS |
| TTCAAAGCAAGTTCTGTTGA+TGG | 0.359866 | 8.3:+32638227 | MS.gene056469:CDS |
| AAAGAAACCATATAACATTA+AGG | 0.365493 | 8.3:-32640234 | None:intergenic |
| TGCTTCCCTTGTAGTACATA+TGG | 0.377343 | 8.3:-32640329 | None:intergenic |
| TTTGGAGCTGTTATCTTCAC+TGG | 0.390973 | 8.3:+32639948 | MS.gene056469:CDS |
| TGAAAGAAGGTATTGAAGAT+TGG | 0.406954 | 8.3:+32638570 | MS.gene056469:CDS |
| GCAAATCTGTACTCGTTTGT+TGG | 0.407737 | 8.3:+32639837 | MS.gene056469:CDS |
| ATAGCAGTAACAGCTCTATA+AGG | 0.412735 | 8.3:-32638512 | None:intergenic |
| GTTGGGAGCTTGGAGTTTGA+AGG | 0.415391 | 8.3:+32639855 | MS.gene056469:CDS |
| AACGAGTACAGATTTGCATT+TGG | 0.420298 | 8.3:-32639831 | None:intergenic |
| GTACTCGTTTGTTGGGAGCT+TGG | 0.426726 | 8.3:+32639845 | MS.gene056469:CDS |
| CTTCACTGGTCATGAGACTA+AGG | 0.437327 | 8.3:+32639962 | MS.gene056469:CDS |
| CAAATCTGTACTCGTTTGTT+GGG | 0.437561 | 8.3:+32639838 | MS.gene056469:CDS |
| TTGGTAGTAAAGGTTATTCA+AGG | 0.440779 | 8.3:+32638264 | MS.gene056469:CDS |
| GAAAGCAATAAGATATCTGC+TGG | 0.454136 | 8.3:-32639657 | None:intergenic |
| AAGAAGTTGCTGTGGGGAAA+GGG | 0.454802 | 8.3:-32639889 | None:intergenic |
| CATTCACAAATTGGTAGTAA+AGG | 0.469250 | 8.3:+32638254 | MS.gene056469:CDS |
| GAAGAAGTTGCTGTGGGGAA+AGG | 0.473322 | 8.3:-32639890 | None:intergenic |
| TACAAGGGAAGCAGACAAAC+CGG | 0.481957 | 8.3:+32640339 | MS.gene056469:CDS |
| AAAACGGTTCGGCGAAAAGA+TGG | 0.482090 | 8.3:+32640132 | MS.gene056469:CDS |
| GAAGTTGAGATCCTCATGTA+AGG | 0.490188 | 8.3:-32639775 | None:intergenic |
| ATTGCTTTCGTCGAGTTATG+AGG | 0.492509 | 8.3:+32639671 | MS.gene056469:CDS |
| TTATGTTGAGACCATGAACT+TGG | 0.501641 | 8.3:+32639704 | MS.gene056469:CDS |
| GATTCTCCTGCAGGATATTG+AGG | 0.509618 | 8.3:+32639524 | MS.gene056469:intron |
| TTTCTTTGATCCAGAAAGAC+CGG | 0.509826 | 8.3:+32640181 | MS.gene056469:CDS |
| AAATATAGTGAAGGTAGAGA+AGG | 0.509951 | 8.3:+32639623 | MS.gene056469:CDS |
| GCCAAAGAAAATAGATCCTA+CGG | 0.514421 | 8.3:-32640087 | None:intergenic |
| AAGAAAACTGTAGAGTCGTC+AGG | 0.517705 | 8.3:-32640164 | None:intergenic |
| GATTGATGAAAATGCTCTGA+AGG | 0.518947 | 8.3:-32640299 | None:intergenic |
| AGACGACTTGCAAAACGGTT+CGG | 0.519754 | 8.3:+32640121 | MS.gene056469:CDS |
| TTTGAAGTGCGAGCATGTGC+CGG | 0.523227 | 8.3:-32640358 | None:intergenic |
| CTTCTGAGGAAGTTGTGATA+AGG | 0.531482 | 8.3:+32638351 | MS.gene056469:CDS |
| AAGCCGAGTTGAGAGAAAGA+TGG | 0.539595 | 8.3:+32640019 | MS.gene056469:CDS |
| TGAAATACAGCAGCAGCGGC+CGG | 0.552299 | 8.3:-32640200 | None:intergenic |
| AAGGTATTGAAGATTGGCGT+AGG | 0.553334 | 8.3:+32638576 | MS.gene056469:CDS |
| AGAAGTTGCTGTGGGGAAAG+GGG | 0.554039 | 8.3:-32639888 | None:intergenic |
| ACTAAAGACGACTTGCAAAA+CGG | 0.555009 | 8.3:+32640116 | MS.gene056469:CDS |
| GGAGCAACTATTGTGAAAGA+AGG | 0.556916 | 8.3:+32638557 | MS.gene056469:CDS |
| AATTGACACATACAAAGAGA+TGG | 0.557497 | 8.3:-32640261 | None:intergenic |
| CTCGCAGAAGAAGTTGCTGT+GGG | 0.563593 | 8.3:-32639896 | None:intergenic |
| AGATATCCATATGTACTACA+AGG | 0.578663 | 8.3:+32640323 | MS.gene056469:CDS |
| TATCCATCTTTCTCTCAACT+CGG | 0.581134 | 8.3:-32640022 | None:intergenic |
| TTGTTTCTAATGGCATCCGT+AGG | 0.583489 | 8.3:+32640071 | MS.gene056469:CDS |
| ATTGACACATACAAAGAGAT+GGG | 0.584732 | 8.3:-32640260 | None:intergenic |
| TGGTAGTAAAGGTTATTCAA+GGG | 0.588099 | 8.3:+32638265 | MS.gene056469:CDS |
| GCTCCAATAACAACAACAAG+AGG | 0.592389 | 8.3:-32638539 | None:intergenic |
| GAAGGTAGGAAATATAGTGA+AGG | 0.597992 | 8.3:+32639614 | MS.gene056469:CDS |
| GCATGGAAGAATCTGAAGGT+AGG | 0.600276 | 8.3:+32639600 | MS.gene056469:CDS |
| CACAACTTCCTCAGAAGTCG+TGG | 0.602660 | 8.3:-32638345 | None:intergenic |
| TAGTAAAGGTTATTCAAGGG+TGG | 0.606719 | 8.3:+32638268 | MS.gene056469:CDS |
| GACTACTGCCACGACTTCTG+AGG | 0.609012 | 8.3:+32638337 | MS.gene056469:CDS |
| TAAGACTTTAGAATGAGGGG+TGG | 0.614361 | 8.3:+32638158 | None:intergenic |
| CAATAACAACAACAAGAGGA+AGG | 0.622130 | 8.3:-32638535 | None:intergenic |
| TCTCGCAGAAGAAGTTGCTG+TGG | 0.623799 | 8.3:-32639897 | None:intergenic |
| GGTAACATCTTCCTTACATG+AGG | 0.634401 | 8.3:+32639764 | MS.gene056469:CDS |
| TACTGCATGGAAGAATCTGA+AGG | 0.635886 | 8.3:+32639596 | MS.gene056469:CDS |
| GGTTAAGACTTTAGAATGAG+GGG | 0.642891 | 8.3:+32638155 | None:intergenic |
| GTGTTATGCAATGAACAAGA+AGG | 0.643804 | 8.3:+32638290 | MS.gene056469:CDS |
| AAAGCAATAAGATATCTGCT+GGG | 0.653943 | 8.3:-32639656 | None:intergenic |
| GATATCCATATGTACTACAA+GGG | 0.659439 | 8.3:+32640324 | MS.gene056469:CDS |
| GTTGAGACCATGAACTTGGA+CGG | 0.659530 | 8.3:+32639708 | MS.gene056469:CDS |
| ACAATGAAATACAGCAGCAG+CGG | 0.666534 | 8.3:-32640204 | None:intergenic |
| TCGCAGAAGAAGTTGCTGTG+GGG | 0.722359 | 8.3:-32639895 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGATGTTAATAAAATATAA+GGG | + | chr8.3:32638768-32638787 | MS.gene056469:intron | 10.0% |
| !!! | AAATTGTTATTTTTAATCAA+TGG | + | chr8.3:32639375-32639394 | MS.gene056469:intron | 10.0% |
| !! | AAAATTCAATCCAAATTTAA+TGG | + | chr8.3:32639045-32639064 | MS.gene056469:intron | 15.0% |
| !! | CTTGATGTTAATAAAATATA+AGG | + | chr8.3:32638767-32638786 | MS.gene056469:intron | 15.0% |
| !! | TTCAAATATTGAACATATAT+TGG | - | chr8.3:32639256-32639275 | None:intergenic | 15.0% |
| !!! | TTAACTAATTGAAAATTTTG+TGG | + | chr8.3:32639086-32639105 | MS.gene056469:intron | 15.0% |
| !! | AAAGAAACCATATAACATTA+AGG | - | chr8.3:32640237-32640256 | None:intergenic | 20.0% |
| !! | ACATAATACAAGAAAATCAT+TGG | - | chr8.3:32639347-32639366 | None:intergenic | 20.0% |
| !! | ATAAGGGAGATAAATTATTT+AGG | + | chr8.3:32638784-32638803 | MS.gene056469:intron | 20.0% |
| !! | ATTCTTTAAGCCATTAAATT+TGG | - | chr8.3:32639058-32639077 | None:intergenic | 20.0% |
| !! | TTTACAAAAAGGTAAAATTG+TGG | + | chr8.3:32639133-32639152 | MS.gene056469:intron | 20.0% |
| !!! | AATTTCTATTTTTTGGTTAC+TGG | + | chr8.3:32638464-32638483 | MS.gene056469:CDS | 20.0% |
| !!! | AATTTTGTGGTATTTTTACA+AGG | + | chr8.3:32639099-32639118 | MS.gene056469:intron | 20.0% |
| !!! | AGTTGCAAATTTCTATTTTT+TGG | + | chr8.3:32638457-32638476 | MS.gene056469:CDS | 20.0% |
| !!! | GTTTTGTATTTTGTTTCTAA+TGG | + | chr8.3:32640061-32640080 | MS.gene056469:CDS | 20.0% |
| ! | ACAACAGATTATAGCTTATA+AGG | - | chr8.3:32638927-32638946 | None:intergenic | 25.0% |
| ! | ACAGAATATTCTGATTCATA+TGG | - | chr8.3:32638725-32638744 | None:intergenic | 25.0% |
| ! | GTTAAAGTTCATAAAGTTGA+TGG | + | chr8.3:32639561-32639580 | MS.gene056469:CDS | 25.0% |
| ! | TAAATTATTTAGGCTCTGTT+TGG | + | chr8.3:32638794-32638813 | MS.gene056469:intron | 25.0% |
| !! | AACTGTTCAAAAAGTGATTT+TGG | - | chr8.3:32638431-32638450 | None:intergenic | 25.0% |
| !! | ACAAATTTGAAGCAAAAACA+AGG | + | chr8.3:32639735-32639754 | MS.gene056469:CDS | 25.0% |
| !! | CGTAATACAGACTATATTTT+TGG | + | chr8.3:32639930-32639949 | MS.gene056469:CDS | 25.0% |
| !! | TCTGTATTTTATCATATGCA+GGG | - | chr8.3:32639432-32639451 | None:intergenic | 25.0% |
| !!! | AATCACTTTTTGAACAGTTT+AGG | + | chr8.3:32638432-32638451 | MS.gene056469:CDS | 25.0% |
| !!! | AATTTTTTGAGCTTATCAAC+AGG | - | chr8.3:32639031-32639050 | None:intergenic | 25.0% |
| AAAGCAATAAGATATCTGCT+GGG | - | chr8.3:32639659-32639678 | None:intergenic | 30.0% | |
| AAATATAGTGAAGGTAGAGA+AGG | + | chr8.3:32639623-32639642 | MS.gene056469:CDS | 30.0% | |
| AATTGACACATACAAAGAGA+TGG | - | chr8.3:32640264-32640283 | None:intergenic | 30.0% | |
| AGATATCCATATGTACTACA+AGG | + | chr8.3:32640323-32640342 | MS.gene056469:CDS | 30.0% | |
| ATTGACACATACAAAGAGAT+GGG | - | chr8.3:32640263-32640282 | None:intergenic | 30.0% | |
| GATATCCATATGTACTACAA+GGG | + | chr8.3:32640324-32640343 | MS.gene056469:CDS | 30.0% | |
| TGGTAGTAAAGGTTATTCAA+GGG | + | chr8.3:32638265-32638284 | MS.gene056469:CDS | 30.0% | |
| TTGACAGCCTTAATGTTATA+TGG | + | chr8.3:32640227-32640246 | MS.gene056469:CDS | 30.0% | |
| ! | CATTCACAAATTGGTAGTAA+AGG | + | chr8.3:32638254-32638273 | MS.gene056469:CDS | 30.0% |
| ! | CCATGAAGTACTTTACAAAA+AGG | + | chr8.3:32639122-32639141 | MS.gene056469:intron | 30.0% |
| ! | CTCTGTATTTTATCATATGC+AGG | - | chr8.3:32639433-32639452 | None:intergenic | 30.0% |
| ! | GTTCAAAAAGTGATTTTGGA+AGG | - | chr8.3:32638427-32638446 | None:intergenic | 30.0% |
| ! | TACAGAGTTAGTAATGCTTT+TGG | + | chr8.3:32639446-32639465 | MS.gene056469:intron | 30.0% |
| ! | TTGGTAGTAAAGGTTATTCA+AGG | + | chr8.3:32638264-32638283 | MS.gene056469:CDS | 30.0% |
| !! | AGCTTTTCTGTTTAGTTTCT+CGG | + | chr8.3:32639178-32639197 | MS.gene056469:intron | 30.0% |
| !! | CCTTTTTGTAAAGTACTTCA+TGG | - | chr8.3:32639125-32639144 | None:intergenic | 30.0% |
| !! | TGAAAGAAGGTATTGAAGAT+TGG | + | chr8.3:32638570-32638589 | MS.gene056469:CDS | 30.0% |
| !!! | TTTTTTGGTTACTGGTGTTT+TGG | + | chr8.3:32638472-32638491 | MS.gene056469:CDS | 30.0% |
| AACGAGTACAGATTTGCATT+TGG | - | chr8.3:32639834-32639853 | None:intergenic | 35.0% | |
| ACTAAAGACGACTTGCAAAA+CGG | + | chr8.3:32640116-32640135 | MS.gene056469:CDS | 35.0% | |
| ATAGCAGTAACAGCTCTATA+AGG | - | chr8.3:32638515-32638534 | None:intergenic | 35.0% | |
| ATTTGAATCTGCTAAGTTGC+AGG | + | chr8.3:32639269-32639288 | MS.gene056469:intron | 35.0% | |
| CAAAAAGGTAAAATTGTGGC+AGG | + | chr8.3:32639137-32639156 | MS.gene056469:intron | 35.0% | |
| CAAATCTGTACTCGTTTGTT+GGG | + | chr8.3:32639838-32639857 | MS.gene056469:CDS | 35.0% | |
| CAATAACAACAACAAGAGGA+AGG | - | chr8.3:32638538-32638557 | None:intergenic | 35.0% | |
| GAAAGCAATAAGATATCTGC+TGG | - | chr8.3:32639660-32639679 | None:intergenic | 35.0% | |
| GAAGCAAAAACAAGGTTTAG+AGG | + | chr8.3:32639743-32639762 | MS.gene056469:CDS | 35.0% | |
| GAAGGTAGGAAATATAGTGA+AGG | + | chr8.3:32639614-32639633 | MS.gene056469:CDS | 35.0% | |
| GATGGAGATCATTCACAAAT+TGG | + | chr8.3:32638245-32638264 | MS.gene056469:CDS | 35.0% | |
| GATTGATGAAAATGCTCTGA+AGG | - | chr8.3:32640302-32640321 | None:intergenic | 35.0% | |
| GCCAAAGAAAATAGATCCTA+CGG | - | chr8.3:32640090-32640109 | None:intergenic | 35.0% | |
| GTAACCCCTAAAAAACTTGA+GGG | + | chr8.3:32639319-32639338 | MS.gene056469:intron | 35.0% | |
| GTGTTATGCAATGAACAAGA+AGG | + | chr8.3:32638290-32638309 | MS.gene056469:CDS | 35.0% | |
| TAGTAAAGGTTATTCAAGGG+TGG | + | chr8.3:32638268-32638287 | MS.gene056469:CDS | 35.0% | |
| TATCCATCTTTCTCTCAACT+CGG | - | chr8.3:32640025-32640044 | None:intergenic | 35.0% | |
| TGTAACCCCTAAAAAACTTG+AGG | + | chr8.3:32639318-32639337 | MS.gene056469:intron | 35.0% | |
| TTATGTTGAGACCATGAACT+TGG | + | chr8.3:32639704-32639723 | MS.gene056469:CDS | 35.0% | |
| TTCAAAGCAAGTTCTGTTGA+TGG | + | chr8.3:32638227-32638246 | MS.gene056469:CDS | 35.0% | |
| TTTCTCGGTATTGTTTCGAA+AGG | + | chr8.3:32639193-32639212 | MS.gene056469:intron | 35.0% | |
| TTTCTTTGATCCAGAAAGAC+CGG | + | chr8.3:32640181-32640200 | MS.gene056469:CDS | 35.0% | |
| TTTGAATCTGCTAAGTTGCA+GGG | + | chr8.3:32639270-32639289 | MS.gene056469:intron | 35.0% | |
| ! | GCGTTTTTGAATATACTGCA+TGG | + | chr8.3:32639583-32639602 | MS.gene056469:CDS | 35.0% |
| ! | TCCGTAGGATCTATTTTCTT+TGG | + | chr8.3:32640086-32640105 | MS.gene056469:CDS | 35.0% |
| !! | CTTCCTCTTGTTGTTGTTAT+TGG | + | chr8.3:32638536-32638555 | MS.gene056469:CDS | 35.0% |
| AAACACTCGTGAGACTATTC+AGG | - | chr8.3:32639005-32639024 | None:intergenic | 40.0% | |
| AACACTCGTGAGACTATTCA+GGG | - | chr8.3:32639004-32639023 | None:intergenic | 40.0% | |
| AAGAAAACTGTAGAGTCGTC+AGG | - | chr8.3:32640167-32640186 | None:intergenic | 40.0% | |
| ACAATGAAATACAGCAGCAG+CGG | - | chr8.3:32640207-32640226 | None:intergenic | 40.0% | |
| ACTACCAACTCTTTCTGTTG+TGG | + | chr8.3:32638625-32638644 | MS.gene056469:intron | 40.0% | |
| AGACTATTCAGGGGAGATTA+TGG | - | chr8.3:32638994-32639013 | None:intergenic | 40.0% | |
| ATTGCTTTCGTCGAGTTATG+AGG | + | chr8.3:32639671-32639690 | MS.gene056469:CDS | 40.0% | |
| CGGCGAAAAGATGGTATTTA+AGG | + | chr8.3:32640141-32640160 | MS.gene056469:CDS | 40.0% | |
| GAAGTTGAGATCCTCATGTA+AGG | - | chr8.3:32639778-32639797 | None:intergenic | 40.0% | |
| GAATCCACAACAGAAAGAGT+TGG | - | chr8.3:32638632-32638651 | None:intergenic | 40.0% | |
| GACATATATGATTCTCCTGC+AGG | + | chr8.3:32639515-32639534 | MS.gene056469:intron | 40.0% | |
| GCAAATCTGTACTCGTTTGT+TGG | + | chr8.3:32639837-32639856 | MS.gene056469:CDS | 40.0% | |
| GCTCCAATAACAACAACAAG+AGG | - | chr8.3:32638542-32638561 | None:intergenic | 40.0% | |
| GGAGCAACTATTGTGAAAGA+AGG | + | chr8.3:32638557-32638576 | MS.gene056469:CDS | 40.0% | |
| GGTAACATCTTCCTTACATG+AGG | + | chr8.3:32639764-32639783 | MS.gene056469:CDS | 40.0% | |
| TACTGCATGGAAGAATCTGA+AGG | + | chr8.3:32639596-32639615 | MS.gene056469:CDS | 40.0% | |
| TGCTTCCCTTGTAGTACATA+TGG | - | chr8.3:32640332-32640351 | None:intergenic | 40.0% | |
| ! | CTTCTGAGGAAGTTGTGATA+AGG | + | chr8.3:32638351-32638370 | MS.gene056469:CDS | 40.0% |
| ! | TTTGGAGCTGTTATCTTCAC+TGG | + | chr8.3:32639948-32639967 | MS.gene056469:CDS | 40.0% |
| !! | AAGGTATTGAAGATTGGCGT+AGG | + | chr8.3:32638576-32638595 | MS.gene056469:CDS | 40.0% |
| !! | TTGTTTCTAATGGCATCCGT+AGG | + | chr8.3:32640071-32640090 | MS.gene056469:CDS | 40.0% |
| !!! | TGGCTCCCTCAAGTTTTTTA+GGG | - | chr8.3:32639327-32639346 | None:intergenic | 40.0% |
| !!! | TTGGCTCCCTCAAGTTTTTT+AGG | - | chr8.3:32639328-32639347 | None:intergenic | 40.0% |
| AAATTGTGGCAGGCAGCTTA+TGG | + | chr8.3:32639147-32639166 | MS.gene056469:intron | 45.0% | |
| AAGAAGTTGCTGTGGGGAAA+GGG | - | chr8.3:32639892-32639911 | None:intergenic | 45.0% | |
| AAGCTATCCCAGAGAGCTTA+TGG | + | chr8.3:32638950-32638969 | MS.gene056469:intron | 45.0% | |
| ACACTCGTGAGACTATTCAG+GGG | - | chr8.3:32639003-32639022 | None:intergenic | 45.0% | |
| AGACGACTTGCAAAACGGTT+CGG | + | chr8.3:32640121-32640140 | MS.gene056469:CDS | 45.0% | |
| AGATTGGCGTAGGAAAAAGC+AGG | + | chr8.3:32638586-32638605 | MS.gene056469:CDS | 45.0% | |
| CTTCACTGGTCATGAGACTA+AGG | + | chr8.3:32639962-32639981 | MS.gene056469:CDS | 45.0% | |
| GACATGTCCATAAGCTCTCT+GGG | - | chr8.3:32638960-32638979 | None:intergenic | 45.0% | |
| GATTCTCCTGCAGGATATTG+AGG | + | chr8.3:32639524-32639543 | MS.gene056469:intron | 45.0% | |
| GCATGGAAGAATCTGAAGGT+AGG | + | chr8.3:32639600-32639619 | MS.gene056469:CDS | 45.0% | |
| GTACTGCAGGATAGAGAAGA+AGG | - | chr8.3:32638677-32638696 | None:intergenic | 45.0% | |
| GTTGAGACCATGAACTTGGA+CGG | + | chr8.3:32639708-32639727 | MS.gene056469:CDS | 45.0% | |
| TACAAGGGAAGCAGACAAAC+CGG | + | chr8.3:32640339-32640358 | MS.gene056469:CDS | 45.0% | |
| TCTCTACACACTTGTACTGC+AGG | - | chr8.3:32638690-32638709 | None:intergenic | 45.0% | |
| TGACATGTCCATAAGCTCTC+TGG | - | chr8.3:32638961-32638980 | None:intergenic | 45.0% | |
| TGTTCACCTCAATATCCTGC+AGG | - | chr8.3:32639533-32639552 | None:intergenic | 45.0% | |
| ! | AAAACGGTTCGGCGAAAAGA+TGG | + | chr8.3:32640132-32640151 | MS.gene056469:CDS | 45.0% |
| ! | AAGCCGAGTTGAGAGAAAGA+TGG | + | chr8.3:32640019-32640038 | MS.gene056469:CDS | 45.0% |
| ! | TCAACTCGGCTTCTTTTCGA+AGG | - | chr8.3:32640011-32640030 | None:intergenic | 45.0% |
| !!! | GGCTCCCTCAAGTTTTTTAG+GGG | - | chr8.3:32639326-32639345 | None:intergenic | 45.0% |
| AAGTTGCAGGGTGCACGTAT+AGG | + | chr8.3:32639282-32639301 | MS.gene056469:intron | 50.0% | |
| AGAAGTTGCTGTGGGGAAAG+GGG | - | chr8.3:32639891-32639910 | None:intergenic | 50.0% | |
| AGTTGCAGGGTGCACGTATA+GGG | + | chr8.3:32639283-32639302 | MS.gene056469:intron | 50.0% | |
| CACAACTTCCTCAGAAGTCG+TGG | - | chr8.3:32638348-32638367 | None:intergenic | 50.0% | |
| CTCGCAGAAGAAGTTGCTGT+GGG | - | chr8.3:32639899-32639918 | None:intergenic | 50.0% | |
| GAAGAAGTTGCTGTGGGGAA+AGG | - | chr8.3:32639893-32639912 | None:intergenic | 50.0% | |
| GTTGGGAGCTTGGAGTTTGA+AGG | + | chr8.3:32639855-32639874 | MS.gene056469:CDS | 50.0% | |
| TCGCAGAAGAAGTTGCTGTG+GGG | - | chr8.3:32639898-32639917 | None:intergenic | 50.0% | |
| TCTCGCAGAAGAAGTTGCTG+TGG | - | chr8.3:32639900-32639919 | None:intergenic | 50.0% | |
| TGTCTCACCGTCCAAGTTCA+TGG | - | chr8.3:32639718-32639737 | None:intergenic | 50.0% | |
| ! | ACTCGGCTTCTTTTCGAAGG+TGG | - | chr8.3:32640008-32640027 | None:intergenic | 50.0% |
| ! | GTACTCGTTTGTTGGGAGCT+TGG | + | chr8.3:32639845-32639864 | MS.gene056469:CDS | 50.0% |
| ! | TTTGAAGTGCGAGCATGTGC+CGG | - | chr8.3:32640361-32640380 | None:intergenic | 50.0% |
| GACTACTGCCACGACTTCTG+AGG | + | chr8.3:32638337-32638356 | MS.gene056469:CDS | 55.0% | |
| TGAAATACAGCAGCAGCGGC+CGG | - | chr8.3:32640203-32640222 | None:intergenic | 55.0% | |
| GCAGCAGCGGCCGGTCTTTC+TGG | - | chr8.3:32640194-32640213 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 32638170 | 32640385 | 32638170 | ID=MS.gene056469 |
| chr8.3 | mRNA | 32638170 | 32640385 | 32638170 | ID=MS.gene056469.t1;Parent=MS.gene056469 |
| chr8.3 | exon | 32638170 | 32638607 | 32638170 | ID=MS.gene056469.t1.exon1;Parent=MS.gene056469.t1 |
| chr8.3 | CDS | 32638170 | 32638607 | 32638170 | ID=cds.MS.gene056469.t1;Parent=MS.gene056469.t1 |
| chr8.3 | exon | 32639537 | 32640385 | 32639537 | ID=MS.gene056469.t1.exon2;Parent=MS.gene056469.t1 |
| chr8.3 | CDS | 32639537 | 32640385 | 32639537 | ID=cds.MS.gene056469.t1;Parent=MS.gene056469.t1 |
| Gene Sequence |
| Protein sequence |
