Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056468.t1 | PNY14304.1 | 90.5 | 529 | 50 | 0 | 1 | 529 | 89 | 617 | 1.30E-276 | 961.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056468.t1 | Q9SX33 | 74.6 | 511 | 122 | 2 | 1 | 506 | 83 | 590 | 4.1e-223 | 775.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056468.t1 | A0A2K3PGC8 | 90.5 | 529 | 50 | 0 | 1 | 529 | 89 | 617 | 9.3e-277 | 961.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056466 | MS.gene056468 | 0.807048 | 6.11E-50 | -1.69E-46 |
| MS.gene056468 | MS.gene056469 | 0.938519 | 5.89E-99 | -1.69E-46 |
| MS.gene056468 | MS.gene074625 | 0.822483 | 2.31E-53 | -1.69E-46 |
| MS.gene056468 | MS.gene93080 | 0.802981 | 4.34E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056468.t1 | MTR_8g069920 | 95.455 | 506 | 23 | 0 | 1 | 506 | 91 | 596 | 0.0 | 1003 |
| MS.gene056468.t1 | MTR_0021s0360 | 77.756 | 508 | 105 | 4 | 1 | 506 | 75 | 576 | 0.0 | 825 |
| MS.gene056468.t1 | MTR_3g037330 | 78.020 | 505 | 102 | 1 | 1 | 505 | 78 | 573 | 0.0 | 824 |
| MS.gene056468.t1 | MTR_3g037330 | 75.835 | 509 | 107 | 2 | 4 | 505 | 4 | 503 | 0.0 | 796 |
| MS.gene056468.t1 | MTR_4g112430 | 67.391 | 506 | 162 | 2 | 1 | 505 | 80 | 583 | 0.0 | 737 |
| MS.gene056468.t1 | MTR_6g006910 | 65.490 | 510 | 171 | 3 | 1 | 506 | 79 | 587 | 0.0 | 705 |
| MS.gene056468.t1 | MTR_2g099690 | 54.528 | 530 | 212 | 5 | 1 | 505 | 82 | 607 | 0.0 | 594 |
| MS.gene056468.t1 | MTR_2g099690 | 53.962 | 530 | 215 | 4 | 1 | 505 | 82 | 607 | 0.0 | 594 |
| MS.gene056468.t1 | MTR_2g099690 | 54.717 | 530 | 211 | 5 | 1 | 505 | 82 | 607 | 0.0 | 593 |
| MS.gene056468.t1 | MTR_8g062150 | 46.976 | 496 | 237 | 8 | 1 | 490 | 83 | 558 | 8.96e-147 | 434 |
| MS.gene056468.t1 | MTR_5g037210 | 47.379 | 496 | 235 | 7 | 1 | 490 | 63 | 538 | 1.07e-144 | 447 |
| MS.gene056468.t1 | MTR_8g018290 | 53.462 | 260 | 95 | 2 | 272 | 505 | 3 | 262 | 4.40e-81 | 271 |
| MS.gene056468.t1 | MTR_8g018290 | 53.462 | 260 | 95 | 2 | 272 | 505 | 3 | 262 | 5.82e-81 | 271 |
| MS.gene056468.t1 | MTR_7g073480 | 34.714 | 507 | 289 | 11 | 1 | 485 | 183 | 669 | 5.90e-80 | 273 |
| MS.gene056468.t1 | MTR_3g007240 | 34.280 | 493 | 298 | 7 | 1 | 485 | 161 | 635 | 1.09e-78 | 265 |
| MS.gene056468.t1 | MTR_3g007240 | 34.280 | 493 | 298 | 7 | 1 | 485 | 161 | 635 | 7.79e-78 | 266 |
| MS.gene056468.t1 | MTR_8g044210 | 33.603 | 494 | 301 | 8 | 1 | 485 | 110 | 585 | 4.19e-76 | 261 |
| MS.gene056468.t1 | MTR_2g090610 | 29.532 | 491 | 285 | 13 | 1 | 485 | 41 | 476 | 1.22e-53 | 196 |
| MS.gene056468.t1 | MTR_2g090610 | 29.532 | 491 | 285 | 13 | 1 | 485 | 41 | 476 | 2.59e-53 | 195 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056468.t1 | AT1G68710 | 74.560 | 511 | 122 | 2 | 1 | 506 | 83 | 590 | 0.0 | 807 |
| MS.gene056468.t1 | AT1G68710 | 74.560 | 511 | 122 | 2 | 1 | 506 | 83 | 590 | 0.0 | 806 |
| MS.gene056468.t1 | AT1G68710 | 74.560 | 511 | 122 | 2 | 1 | 506 | 83 | 590 | 0.0 | 806 |
| MS.gene056468.t1 | AT1G26130 | 72.727 | 506 | 135 | 1 | 1 | 506 | 83 | 585 | 0.0 | 790 |
| MS.gene056468.t1 | AT1G26130 | 72.727 | 506 | 135 | 1 | 1 | 506 | 83 | 585 | 0.0 | 790 |
| MS.gene056468.t1 | AT1G26130 | 72.727 | 506 | 135 | 1 | 1 | 506 | 83 | 585 | 0.0 | 790 |
| MS.gene056468.t1 | AT1G26130 | 72.727 | 506 | 135 | 1 | 1 | 506 | 83 | 585 | 0.0 | 790 |
| MS.gene056468.t1 | AT3G25610 | 70.669 | 508 | 142 | 3 | 1 | 506 | 81 | 583 | 0.0 | 759 |
| MS.gene056468.t1 | AT1G13210 | 70.138 | 509 | 144 | 4 | 1 | 506 | 79 | 582 | 0.0 | 735 |
| MS.gene056468.t1 | AT3G27870 | 64.892 | 507 | 170 | 4 | 1 | 506 | 79 | 578 | 0.0 | 718 |
| MS.gene056468.t1 | AT3G27870 | 64.892 | 507 | 170 | 4 | 1 | 506 | 79 | 578 | 0.0 | 717 |
| MS.gene056468.t1 | AT3G13900 | 54.935 | 537 | 202 | 5 | 1 | 505 | 82 | 610 | 0.0 | 598 |
| MS.gene056468.t1 | AT3G13900 | 54.935 | 537 | 202 | 5 | 1 | 505 | 82 | 610 | 0.0 | 598 |
| MS.gene056468.t1 | AT3G13900 | 54.935 | 537 | 202 | 5 | 1 | 505 | 82 | 610 | 0.0 | 597 |
| MS.gene056468.t1 | AT1G54280 | 55.056 | 534 | 207 | 4 | 1 | 505 | 83 | 612 | 0.0 | 597 |
| MS.gene056468.t1 | AT1G54280 | 55.056 | 534 | 207 | 4 | 1 | 505 | 83 | 612 | 0.0 | 597 |
| MS.gene056468.t1 | AT1G54280 | 55.056 | 534 | 207 | 4 | 1 | 505 | 83 | 612 | 0.0 | 597 |
| MS.gene056468.t1 | AT1G72700 | 55.133 | 526 | 211 | 3 | 1 | 505 | 82 | 603 | 0.0 | 593 |
| MS.gene056468.t1 | AT1G72700 | 55.133 | 526 | 211 | 3 | 1 | 505 | 82 | 603 | 0.0 | 593 |
| MS.gene056468.t1 | AT1G72700 | 55.133 | 526 | 211 | 3 | 1 | 505 | 82 | 603 | 0.0 | 593 |
| MS.gene056468.t1 | AT1G17500 | 54.951 | 515 | 218 | 2 | 1 | 505 | 82 | 592 | 0.0 | 590 |
| MS.gene056468.t1 | AT1G17500 | 54.951 | 515 | 218 | 2 | 1 | 505 | 82 | 592 | 0.0 | 590 |
| MS.gene056468.t1 | AT3G27870 | 64.975 | 394 | 130 | 4 | 114 | 506 | 1 | 387 | 0.0 | 562 |
| MS.gene056468.t1 | AT1G59820 | 47.035 | 489 | 238 | 6 | 1 | 488 | 75 | 543 | 8.64e-146 | 450 |
| MS.gene056468.t1 | AT5G04930 | 34.200 | 500 | 290 | 10 | 1 | 485 | 108 | 583 | 5.99e-78 | 266 |
| MS.gene056468.t1 | AT5G44240 | 28.226 | 496 | 295 | 13 | 1 | 490 | 41 | 481 | 4.32e-51 | 189 |
| MS.gene056468.t1 | AT5G44240 | 28.226 | 496 | 295 | 13 | 1 | 490 | 73 | 513 | 6.55e-51 | 188 |
Find 94 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCCTCTTGTTGTTGTTAT+TGG | 0.033009 | 8.3:+32651353 | MS.gene056468:CDS |
| CCTGTGTCTTGATCTATTTC+TGG | 0.074243 | 8.3:-32653542 | None:intergenic |
| GCAGCAGCGGCCGGTCTTTC+TGG | 0.118823 | 8.3:-32653008 | None:intergenic |
| TTCGAGTTGGATCCGGTTTC+AGG | 0.186473 | 8.3:+32653671 | MS.gene056468:CDS |
| CGGCGAAAAGATGGTATTTA+AGG | 0.254679 | 8.3:+32652958 | MS.gene056468:CDS |
| TTGACAGCCTTAATGTTATA+TGG | 0.270443 | 8.3:+32653044 | MS.gene056468:CDS |
| GTTATTGCGGCAAGAGAAAT+TGG | 0.287354 | 8.3:+32653608 | MS.gene056468:CDS |
| AAAGAATAATGAATGGTAAC+TGG | 0.291908 | 8.3:+32653450 | MS.gene056468:CDS |
| GATGAATTCCATCGAGTTGC+AGG | 0.313455 | 8.3:-32653255 | None:intergenic |
| GCATATGGAAACACACCTTT+AGG | 0.333030 | 8.3:+32653761 | MS.gene056468:CDS |
| TGTCTCACCGTCCAAGTTCA+TGG | 0.336386 | 8.3:-32652532 | None:intergenic |
| CTGCTTCCTTGTAGTACATA+TGG | 0.338780 | 8.3:-32653145 | None:intergenic |
| ACAATACTTTCTGATAAAAC+TGG | 0.339621 | 8.3:+32653224 | MS.gene056468:CDS |
| GTTAAAGTTCATAAAGTTGA+TGG | 0.354361 | 8.3:+32652378 | MS.gene056468:CDS |
| AAAGAAACCATATAACATTA+AGG | 0.365493 | 8.3:-32653051 | None:intergenic |
| AAAAGGTTCATCGGTAGTTC+AGG | 0.368646 | 8.3:+32653346 | MS.gene056468:CDS |
| TCGATCGCTGGTGTAGCTTA+TGG | 0.383191 | 8.3:+32653284 | MS.gene056468:CDS |
| TCAACTTTCTTGCCTGAAAC+CGG | 0.386614 | 8.3:-32653683 | None:intergenic |
| TTTGGAGCTGTTATCTTCAC+TGG | 0.390973 | 8.3:+32652765 | MS.gene056468:CDS |
| GGTTAGTTGTTTCAATTGCT+TGG | 0.406534 | 8.3:+32653708 | MS.gene056468:CDS |
| TGAAAGAAGGTATTGAAGAT+TGG | 0.406954 | 8.3:+32651387 | MS.gene056468:CDS |
| GCAAATCTGTACTCGTTTGT+TGG | 0.407737 | 8.3:+32652654 | MS.gene056468:CDS |
| ATAGCAGTAACAGCTCTATA+AGG | 0.412735 | 8.3:-32651329 | None:intergenic |
| GTTGGGAGCTTGGAGTTTGA+AGG | 0.415391 | 8.3:+32652672 | MS.gene056468:CDS |
| AACGAGTACAGATTTGCATT+TGG | 0.420298 | 8.3:-32652648 | None:intergenic |
| GTACTCGTTTGTTGGGAGCT+TGG | 0.426726 | 8.3:+32652662 | MS.gene056468:CDS |
| ATCGACATTCGAGTTGGATC+CGG | 0.427934 | 8.3:+32653664 | MS.gene056468:CDS |
| CAACTCGAATGTCGATAAAC+TGG | 0.433803 | 8.3:-32653657 | None:intergenic |
| CTTCACTGGTCATGAGACTA+AGG | 0.437327 | 8.3:+32652779 | MS.gene056468:CDS |
| CAAATCTGTACTCGTTTGTT+GGG | 0.437561 | 8.3:+32652655 | MS.gene056468:CDS |
| TATCTGAAGAAGATGACATC+AGG | 0.444039 | 8.3:+32653378 | MS.gene056468:CDS |
| CTCCTACGAGGCTGAATCTC+CGG | 0.445077 | 8.3:+32653571 | MS.gene056468:CDS |
| GTCTTGATCTATTTCTGGTA+TGG | 0.448005 | 8.3:-32653537 | None:intergenic |
| GAAAGCAATAAGATATCTGC+TGG | 0.454136 | 8.3:-32652474 | None:intergenic |
| AAGAAGTTGCTGTGGGGAAA+GGG | 0.454802 | 8.3:-32652706 | None:intergenic |
| GAAGAAGTTGCTGTGGGGAA+AGG | 0.473322 | 8.3:-32652707 | None:intergenic |
| AAAACGGTTCGGCGAAAAGA+TGG | 0.482090 | 8.3:+32652949 | MS.gene056468:CDS |
| GAAGTTGAGATCCTCATGTA+AGG | 0.490188 | 8.3:-32652592 | None:intergenic |
| ATTGCTTTCGTCGAGTTATG+AGG | 0.492509 | 8.3:+32652488 | MS.gene056468:CDS |
| AAAACCATGAGTAGAAGAAA+AGG | 0.501512 | 8.3:+32653329 | MS.gene056468:CDS |
| TTATGTTGAGACCATGAACT+TGG | 0.501641 | 8.3:+32652521 | MS.gene056468:CDS |
| ATAACAAATGCAGCTTCATC+CGG | 0.503351 | 8.3:-32653590 | None:intergenic |
| GATTCTCCTGCAGGATATTG+AGG | 0.509618 | 8.3:+32652341 | MS.gene056468:intron |
| TTTCTTTGATCCAGAAAGAC+CGG | 0.509826 | 8.3:+32652998 | MS.gene056468:CDS |
| AAATATAGTGAAGGTAGAGA+AGG | 0.509951 | 8.3:+32652440 | MS.gene056468:CDS |
| TTCATCAAATGTTCGATCGC+TGG | 0.510172 | 8.3:+32653272 | MS.gene056468:CDS |
| GCCAAAGAAAATAGATCCTA+CGG | 0.514421 | 8.3:-32652904 | None:intergenic |
| AAGAAAACTGTAGAGTCGTC+AGG | 0.517705 | 8.3:-32652981 | None:intergenic |
| GATTGATGAAAATGCTCTGA+AGG | 0.518947 | 8.3:-32653115 | None:intergenic |
| AGACGACTTGCAAAACGGTT+CGG | 0.519754 | 8.3:+32652938 | MS.gene056468:CDS |
| TTTGAAGTGCGAGCATGTGC+CGG | 0.523227 | 8.3:-32653173 | None:intergenic |
| AAAATGCATATCCGTCCTAA+AGG | 0.528145 | 8.3:-32653776 | None:intergenic |
| AAGCCGAGTTGAGAGAAAGA+TGG | 0.539595 | 8.3:+32652836 | MS.gene056468:CDS |
| AACTTTGACCTGCAACTCGA+TGG | 0.540791 | 8.3:+32653247 | MS.gene056468:CDS |
| TATTGACACATACAAAGAGA+TGG | 0.545079 | 8.3:-32653078 | None:intergenic |
| CAGTTTATCGACATTCGAGT+TGG | 0.545441 | 8.3:+32653658 | MS.gene056468:CDS |
| ACTGATGAAAGAATAATGAA+TGG | 0.549401 | 8.3:+32653443 | MS.gene056468:CDS |
| TGAAATACAGCAGCAGCGGC+CGG | 0.552299 | 8.3:-32653017 | None:intergenic |
| TGGTATGGCTGTATGACAAA+CGG | 0.552523 | 8.3:-32653522 | None:intergenic |
| AAGGTATTGAAGATTGGCGT+AGG | 0.553334 | 8.3:+32651393 | MS.gene056468:CDS |
| AGAAGTTGCTGTGGGGAAAG+GGG | 0.554039 | 8.3:-32652705 | None:intergenic |
| ACTAAAGACGACTTGCAAAA+CGG | 0.555009 | 8.3:+32652933 | MS.gene056468:CDS |
| GGAGCAACTATTGTGAAAGA+AGG | 0.556916 | 8.3:+32651374 | MS.gene056468:CDS |
| TGAAGCTGCATTTGTTATTG+CGG | 0.558146 | 8.3:+32653595 | MS.gene056468:CDS |
| AAGAATAATGAATGGTAACT+GGG | 0.561151 | 8.3:+32653451 | MS.gene056468:CDS |
| CTCGCAGAAGAAGTTGCTGT+GGG | 0.563593 | 8.3:-32652713 | None:intergenic |
| CTACAAGGAAGCAGACAAAC+CGG | 0.566422 | 8.3:+32653154 | MS.gene056468:CDS |
| TATCCATCTTTCTCTCAACT+CGG | 0.581134 | 8.3:-32652839 | None:intergenic |
| TTGTTTCTAATGGCATCCGT+AGG | 0.583489 | 8.3:+32652888 | MS.gene056468:CDS |
| TCAAACTTGAACGAGGAGCT+CGG | 0.587910 | 8.3:+32653191 | MS.gene056468:CDS |
| ATCTGAAGAAGATGACATCA+GGG | 0.589545 | 8.3:+32653379 | MS.gene056468:CDS |
| GCTCCAATAACAACAACAAG+AGG | 0.592389 | 8.3:-32651356 | None:intergenic |
| ATTGACACATACAAAGAGAT+GGG | 0.593790 | 8.3:-32653077 | None:intergenic |
| GAGTAGAAGAAAAGGTTCAT+CGG | 0.597269 | 8.3:+32653337 | MS.gene056468:CDS |
| GAAGGTAGGAAATATAGTGA+AGG | 0.597992 | 8.3:+32652431 | MS.gene056468:CDS |
| TTTCAGGCAAGAAAGTTGAA+AGG | 0.598352 | 8.3:+32653687 | MS.gene056468:CDS |
| GCATGGAAGAATCTGAAGGT+AGG | 0.600276 | 8.3:+32652417 | MS.gene056468:CDS |
| GCTGGTGTAGCTTATGGTCG+TGG | 0.601721 | 8.3:+32653290 | MS.gene056468:CDS |
| CAATAACAACAACAAGAGGA+AGG | 0.622130 | 8.3:-32651352 | None:intergenic |
| TCTCGCAGAAGAAGTTGCTG+TGG | 0.623799 | 8.3:-32652714 | None:intergenic |
| AGATATCCATATGTACTACA+AGG | 0.629740 | 8.3:+32653139 | MS.gene056468:CDS |
| GGTAACATCTTCCTTACATG+AGG | 0.634401 | 8.3:+32652581 | MS.gene056468:CDS |
| TACTGCATGGAAGAATCTGA+AGG | 0.635886 | 8.3:+32652413 | MS.gene056468:CDS |
| ATCCGGAGATTCAGCCTCGT+AGG | 0.646783 | 8.3:-32653573 | None:intergenic |
| AAAGCAATAAGATATCTGCT+GGG | 0.653943 | 8.3:-32652473 | None:intergenic |
| GTTGAGACCATGAACTTGGA+CGG | 0.659530 | 8.3:+32652525 | MS.gene056468:CDS |
| TTCTGGATAACATCTGCATG+AGG | 0.660085 | 8.3:-32653482 | None:intergenic |
| ATGGAAACACACCTTTAGGA+CGG | 0.664872 | 8.3:+32653765 | MS.gene056468:CDS |
| ACAATGAAATACAGCAGCAG+CGG | 0.666534 | 8.3:-32653021 | None:intergenic |
| CCAGAAATAGATCAAGACAC+AGG | 0.681899 | 8.3:+32653542 | MS.gene056468:CDS |
| CACAGGAAATGTCTCCTACG+AGG | 0.720054 | 8.3:+32653559 | MS.gene056468:CDS |
| TCTGAAGAAGATGACATCAG+GGG | 0.720971 | 8.3:+32653380 | MS.gene056468:CDS |
| TCGCAGAAGAAGTTGCTGTG+GGG | 0.722359 | 8.3:-32652712 | None:intergenic |
| TCGCACTTCAAACTTGAACG+AGG | 0.722504 | 8.3:+32653184 | MS.gene056468:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGATGTTAATAAAATATAA+GGG | + | chr8.3:32651585-32651604 | MS.gene056468:intron | 10.0% |
| !!! | AAATTGTTATTTTTAATCAA+TGG | + | chr8.3:32652192-32652211 | MS.gene056468:intron | 10.0% |
| !! | AAAATTCAATCCAAATTTAA+TGG | + | chr8.3:32651862-32651881 | MS.gene056468:intron | 15.0% |
| !! | CTTGATGTTAATAAAATATA+AGG | + | chr8.3:32651584-32651603 | MS.gene056468:intron | 15.0% |
| !! | TTCAAATATTGAACATATAT+TGG | - | chr8.3:32652073-32652092 | None:intergenic | 15.0% |
| !!! | AGTAAAGTTAAAACTTTTAA+TGG | - | chr8.3:32653426-32653445 | None:intergenic | 15.0% |
| !!! | TTAACTAATTGAAAATTTTG+TGG | + | chr8.3:32651903-32651922 | MS.gene056468:intron | 15.0% |
| !! | AAAGAAACCATATAACATTA+AGG | - | chr8.3:32653054-32653073 | None:intergenic | 20.0% |
| !! | ACATAATACAAGAAAATCAT+TGG | - | chr8.3:32652164-32652183 | None:intergenic | 20.0% |
| !! | ATAAGGGAGATAAATTATTT+AGG | + | chr8.3:32651601-32651620 | MS.gene056468:intron | 20.0% |
| !! | ATTCTTTAAGCCATTAAATT+TGG | - | chr8.3:32651875-32651894 | None:intergenic | 20.0% |
| !! | TTTACAAAAAGGTAAAATTG+TGG | + | chr8.3:32651950-32651969 | MS.gene056468:intron | 20.0% |
| !!! | AATTTCTATTTTTTGGTTAC+TGG | + | chr8.3:32651281-32651300 | MS.gene056468:CDS | 20.0% |
| !!! | AATTTTGTGGTATTTTTACA+AGG | + | chr8.3:32651916-32651935 | MS.gene056468:intron | 20.0% |
| !!! | AGTTGCAAATTTCTATTTTT+TGG | + | chr8.3:32651274-32651293 | MS.gene056468:CDS | 20.0% |
| !!! | GTTTTGTATTTTGTTTCTAA+TGG | + | chr8.3:32652878-32652897 | MS.gene056468:CDS | 20.0% |
| ! | AAAGAATAATGAATGGTAAC+TGG | + | chr8.3:32653450-32653469 | MS.gene056468:CDS | 25.0% |
| ! | AAGAATAATGAATGGTAACT+GGG | + | chr8.3:32653451-32653470 | MS.gene056468:CDS | 25.0% |
| ! | ACAACAGATTATAGCTTATA+AGG | - | chr8.3:32651744-32651763 | None:intergenic | 25.0% |
| ! | ACAATACTTTCTGATAAAAC+TGG | + | chr8.3:32653224-32653243 | MS.gene056468:CDS | 25.0% |
| ! | ACAGAATATTCTGATTCATA+TGG | - | chr8.3:32651542-32651561 | None:intergenic | 25.0% |
| ! | ACTGATGAAAGAATAATGAA+TGG | + | chr8.3:32653443-32653462 | MS.gene056468:CDS | 25.0% |
| ! | GTTAAAGTTCATAAAGTTGA+TGG | + | chr8.3:32652378-32652397 | MS.gene056468:CDS | 25.0% |
| ! | TAAATTATTTAGGCTCTGTT+TGG | + | chr8.3:32651611-32651630 | MS.gene056468:intron | 25.0% |
| !! | ACAAATTTGAAGCAAAAACA+AGG | + | chr8.3:32652552-32652571 | MS.gene056468:CDS | 25.0% |
| !! | CGTAATACAGACTATATTTT+TGG | + | chr8.3:32652747-32652766 | MS.gene056468:CDS | 25.0% |
| !! | TCTGTATTTTATCATATGCA+GGG | - | chr8.3:32652249-32652268 | None:intergenic | 25.0% |
| !!! | AATTTTTTGAGCTTATCAAC+AGG | - | chr8.3:32651848-32651867 | None:intergenic | 25.0% |
| !!! | TGGTTTTGAATTCTTCAAAA+GGG | + | chr8.3:32653628-32653647 | MS.gene056468:CDS | 25.0% |
| !!! | TTGGTTTTGAATTCTTCAAA+AGG | + | chr8.3:32653627-32653646 | MS.gene056468:CDS | 25.0% |
| AAAACCATGAGTAGAAGAAA+AGG | + | chr8.3:32653329-32653348 | MS.gene056468:CDS | 30.0% | |
| AAAGCAATAAGATATCTGCT+GGG | - | chr8.3:32652476-32652495 | None:intergenic | 30.0% | |
| AAATATAGTGAAGGTAGAGA+AGG | + | chr8.3:32652440-32652459 | MS.gene056468:CDS | 30.0% | |
| AGATATCCATATGTACTACA+AGG | + | chr8.3:32653139-32653158 | MS.gene056468:CDS | 30.0% | |
| ATTGACACATACAAAGAGAT+GGG | - | chr8.3:32653080-32653099 | None:intergenic | 30.0% | |
| TATTGACACATACAAAGAGA+TGG | - | chr8.3:32653081-32653100 | None:intergenic | 30.0% | |
| TTGACAGCCTTAATGTTATA+TGG | + | chr8.3:32653044-32653063 | MS.gene056468:CDS | 30.0% | |
| ! | CCATGAAGTACTTTACAAAA+AGG | + | chr8.3:32651939-32651958 | MS.gene056468:intron | 30.0% |
| ! | CTCTGTATTTTATCATATGC+AGG | - | chr8.3:32652250-32652269 | None:intergenic | 30.0% |
| ! | TACAGAGTTAGTAATGCTTT+TGG | + | chr8.3:32652263-32652282 | MS.gene056468:intron | 30.0% |
| !! | AGCTTTTCTGTTTAGTTTCT+CGG | + | chr8.3:32651995-32652014 | MS.gene056468:intron | 30.0% |
| !! | CCTTTTTGTAAAGTACTTCA+TGG | - | chr8.3:32651942-32651961 | None:intergenic | 30.0% |
| !! | TGAAAGAAGGTATTGAAGAT+TGG | + | chr8.3:32651387-32651406 | MS.gene056468:CDS | 30.0% |
| !!! | TTTTTTGGTTACTGGTGTTT+TGG | + | chr8.3:32651289-32651308 | MS.gene056468:CDS | 30.0% |
| AAAATGCATATCCGTCCTAA+AGG | - | chr8.3:32653779-32653798 | None:intergenic | 35.0% | |
| AACGAGTACAGATTTGCATT+TGG | - | chr8.3:32652651-32652670 | None:intergenic | 35.0% | |
| ACTAAAGACGACTTGCAAAA+CGG | + | chr8.3:32652933-32652952 | MS.gene056468:CDS | 35.0% | |
| ATAACAAATGCAGCTTCATC+CGG | - | chr8.3:32653593-32653612 | None:intergenic | 35.0% | |
| ATAGCAGTAACAGCTCTATA+AGG | - | chr8.3:32651332-32651351 | None:intergenic | 35.0% | |
| ATCTGAAGAAGATGACATCA+GGG | + | chr8.3:32653379-32653398 | MS.gene056468:CDS | 35.0% | |
| ATTTGAATCTGCTAAGTTGC+AGG | + | chr8.3:32652086-32652105 | MS.gene056468:intron | 35.0% | |
| CAAAAAGGTAAAATTGTGGC+AGG | + | chr8.3:32651954-32651973 | MS.gene056468:intron | 35.0% | |
| CAAATCTGTACTCGTTTGTT+GGG | + | chr8.3:32652655-32652674 | MS.gene056468:CDS | 35.0% | |
| CAATAACAACAACAAGAGGA+AGG | - | chr8.3:32651355-32651374 | None:intergenic | 35.0% | |
| CCAATAGACGAAAAAACTTC+TGG | - | chr8.3:32653502-32653521 | None:intergenic | 35.0% | |
| GAAAGCAATAAGATATCTGC+TGG | - | chr8.3:32652477-32652496 | None:intergenic | 35.0% | |
| GAAGCAAAAACAAGGTTTAG+AGG | + | chr8.3:32652560-32652579 | MS.gene056468:CDS | 35.0% | |
| GAAGGTAGGAAATATAGTGA+AGG | + | chr8.3:32652431-32652450 | MS.gene056468:CDS | 35.0% | |
| GAGTAGAAGAAAAGGTTCAT+CGG | + | chr8.3:32653337-32653356 | MS.gene056468:CDS | 35.0% | |
| GATTGATGAAAATGCTCTGA+AGG | - | chr8.3:32653118-32653137 | None:intergenic | 35.0% | |
| GCCAAAGAAAATAGATCCTA+CGG | - | chr8.3:32652907-32652926 | None:intergenic | 35.0% | |
| GTAACCCCTAAAAAACTTGA+GGG | + | chr8.3:32652136-32652155 | MS.gene056468:intron | 35.0% | |
| TATCCATCTTTCTCTCAACT+CGG | - | chr8.3:32652842-32652861 | None:intergenic | 35.0% | |
| TATCTGAAGAAGATGACATC+AGG | + | chr8.3:32653378-32653397 | MS.gene056468:CDS | 35.0% | |
| TGTAACCCCTAAAAAACTTG+AGG | + | chr8.3:32652135-32652154 | MS.gene056468:intron | 35.0% | |
| TTATGTTGAGACCATGAACT+TGG | + | chr8.3:32652521-32652540 | MS.gene056468:CDS | 35.0% | |
| TTTCAGGCAAGAAAGTTGAA+AGG | + | chr8.3:32653687-32653706 | MS.gene056468:CDS | 35.0% | |
| TTTCTCGGTATTGTTTCGAA+AGG | + | chr8.3:32652010-32652029 | MS.gene056468:intron | 35.0% | |
| TTTCTTTGATCCAGAAAGAC+CGG | + | chr8.3:32652998-32653017 | MS.gene056468:CDS | 35.0% | |
| TTTGAATCTGCTAAGTTGCA+GGG | + | chr8.3:32652087-32652106 | MS.gene056468:intron | 35.0% | |
| ! | GCGTTTTTGAATATACTGCA+TGG | + | chr8.3:32652400-32652419 | MS.gene056468:CDS | 35.0% |
| ! | GCTGCAATTTTTCTTGCATA+TGG | + | chr8.3:32653746-32653765 | MS.gene056468:CDS | 35.0% |
| ! | GGTTAGTTGTTTCAATTGCT+TGG | + | chr8.3:32653708-32653727 | MS.gene056468:CDS | 35.0% |
| ! | TCCGTAGGATCTATTTTCTT+TGG | + | chr8.3:32652903-32652922 | MS.gene056468:CDS | 35.0% |
| ! | TGAACCTTTTCTTCTACTCA+TGG | - | chr8.3:32653336-32653355 | None:intergenic | 35.0% |
| !! | CTTCCTCTTGTTGTTGTTAT+TGG | + | chr8.3:32651353-32651372 | MS.gene056468:CDS | 35.0% |
| !! | GTCTTGATCTATTTCTGGTA+TGG | - | chr8.3:32653540-32653559 | None:intergenic | 35.0% |
| !! | TGAAGCTGCATTTGTTATTG+CGG | + | chr8.3:32653595-32653614 | MS.gene056468:CDS | 35.0% |
| !!! | CCAGAAGTTTTTTCGTCTAT+TGG | + | chr8.3:32653499-32653518 | MS.gene056468:CDS | 35.0% |
| AAAAGGTTCATCGGTAGTTC+AGG | + | chr8.3:32653346-32653365 | MS.gene056468:CDS | 40.0% | |
| AAACACTCGTGAGACTATTC+AGG | - | chr8.3:32651822-32651841 | None:intergenic | 40.0% | |
| AACACTCGTGAGACTATTCA+GGG | - | chr8.3:32651821-32651840 | None:intergenic | 40.0% | |
| AAGAAAACTGTAGAGTCGTC+AGG | - | chr8.3:32652984-32653003 | None:intergenic | 40.0% | |
| ACAATGAAATACAGCAGCAG+CGG | - | chr8.3:32653024-32653043 | None:intergenic | 40.0% | |
| ACTACCAACTCTTTCTGTTG+TGG | + | chr8.3:32651442-32651461 | MS.gene056468:intron | 40.0% | |
| AGACTATTCAGGGGAGATTA+TGG | - | chr8.3:32651811-32651830 | None:intergenic | 40.0% | |
| ATTGCTTTCGTCGAGTTATG+AGG | + | chr8.3:32652488-32652507 | MS.gene056468:CDS | 40.0% | |
| CAACTCGAATGTCGATAAAC+TGG | - | chr8.3:32653660-32653679 | None:intergenic | 40.0% | |
| CAGTTTATCGACATTCGAGT+TGG | + | chr8.3:32653658-32653677 | MS.gene056468:CDS | 40.0% | |
| CCAGAAATAGATCAAGACAC+AGG | + | chr8.3:32653542-32653561 | MS.gene056468:CDS | 40.0% | |
| CCTGTGTCTTGATCTATTTC+TGG | - | chr8.3:32653545-32653564 | None:intergenic | 40.0% | |
| CGGCGAAAAGATGGTATTTA+AGG | + | chr8.3:32652958-32652977 | MS.gene056468:CDS | 40.0% | |
| CTGCTTCCTTGTAGTACATA+TGG | - | chr8.3:32653148-32653167 | None:intergenic | 40.0% | |
| GAAGTTGAGATCCTCATGTA+AGG | - | chr8.3:32652595-32652614 | None:intergenic | 40.0% | |
| GAATCCACAACAGAAAGAGT+TGG | - | chr8.3:32651449-32651468 | None:intergenic | 40.0% | |
| GACATATATGATTCTCCTGC+AGG | + | chr8.3:32652332-32652351 | MS.gene056468:intron | 40.0% | |
| GCAAATCTGTACTCGTTTGT+TGG | + | chr8.3:32652654-32652673 | MS.gene056468:CDS | 40.0% | |
| GCATATGGAAACACACCTTT+AGG | + | chr8.3:32653761-32653780 | MS.gene056468:CDS | 40.0% | |
| GCTCCAATAACAACAACAAG+AGG | - | chr8.3:32651359-32651378 | None:intergenic | 40.0% | |
| GGAGCAACTATTGTGAAAGA+AGG | + | chr8.3:32651374-32651393 | MS.gene056468:CDS | 40.0% | |
| GGTAACATCTTCCTTACATG+AGG | + | chr8.3:32652581-32652600 | MS.gene056468:CDS | 40.0% | |
| GTTATTGCGGCAAGAGAAAT+TGG | + | chr8.3:32653608-32653627 | MS.gene056468:CDS | 40.0% | |
| TACTGCATGGAAGAATCTGA+AGG | + | chr8.3:32652413-32652432 | MS.gene056468:CDS | 40.0% | |
| TCAACTTTCTTGCCTGAAAC+CGG | - | chr8.3:32653686-32653705 | None:intergenic | 40.0% | |
| TCTGAAGAAGATGACATCAG+GGG | + | chr8.3:32653380-32653399 | MS.gene056468:CDS | 40.0% | |
| TGGTATGGCTGTATGACAAA+CGG | - | chr8.3:32653525-32653544 | None:intergenic | 40.0% | |
| TTCATCAAATGTTCGATCGC+TGG | + | chr8.3:32653272-32653291 | MS.gene056468:CDS | 40.0% | |
| TTCTGGATAACATCTGCATG+AGG | - | chr8.3:32653485-32653504 | None:intergenic | 40.0% | |
| ! | ATGGAAACACACCTTTAGGA+CGG | + | chr8.3:32653765-32653784 | MS.gene056468:CDS | 40.0% |
| ! | TTTGGAGCTGTTATCTTCAC+TGG | + | chr8.3:32652765-32652784 | MS.gene056468:CDS | 40.0% |
| !! | AAGGTATTGAAGATTGGCGT+AGG | + | chr8.3:32651393-32651412 | MS.gene056468:CDS | 40.0% |
| !! | TTGTTTCTAATGGCATCCGT+AGG | + | chr8.3:32652888-32652907 | MS.gene056468:CDS | 40.0% |
| !!! | TGGCTCCCTCAAGTTTTTTA+GGG | - | chr8.3:32652144-32652163 | None:intergenic | 40.0% |
| !!! | TTGGCTCCCTCAAGTTTTTT+AGG | - | chr8.3:32652145-32652164 | None:intergenic | 40.0% |
| AAATTGTGGCAGGCAGCTTA+TGG | + | chr8.3:32651964-32651983 | MS.gene056468:intron | 45.0% | |
| AACTTTGACCTGCAACTCGA+TGG | + | chr8.3:32653247-32653266 | MS.gene056468:CDS | 45.0% | |
| AAGAAGTTGCTGTGGGGAAA+GGG | - | chr8.3:32652709-32652728 | None:intergenic | 45.0% | |
| AAGCTATCCCAGAGAGCTTA+TGG | + | chr8.3:32651767-32651786 | MS.gene056468:intron | 45.0% | |
| ACACTCGTGAGACTATTCAG+GGG | - | chr8.3:32651820-32651839 | None:intergenic | 45.0% | |
| AGACGACTTGCAAAACGGTT+CGG | + | chr8.3:32652938-32652957 | MS.gene056468:CDS | 45.0% | |
| AGATTGGCGTAGGAAAAAGC+AGG | + | chr8.3:32651403-32651422 | MS.gene056468:CDS | 45.0% | |
| CTACAAGGAAGCAGACAAAC+CGG | + | chr8.3:32653154-32653173 | MS.gene056468:CDS | 45.0% | |
| CTTCACTGGTCATGAGACTA+AGG | + | chr8.3:32652779-32652798 | MS.gene056468:CDS | 45.0% | |
| GACATGTCCATAAGCTCTCT+GGG | - | chr8.3:32651777-32651796 | None:intergenic | 45.0% | |
| GATTCTCCTGCAGGATATTG+AGG | + | chr8.3:32652341-32652360 | MS.gene056468:intron | 45.0% | |
| GCATGGAAGAATCTGAAGGT+AGG | + | chr8.3:32652417-32652436 | MS.gene056468:CDS | 45.0% | |
| GTACTGCAGGATAGAGAAGA+AGG | - | chr8.3:32651494-32651513 | None:intergenic | 45.0% | |
| GTTGAGACCATGAACTTGGA+CGG | + | chr8.3:32652525-32652544 | MS.gene056468:CDS | 45.0% | |
| TCAAACTTGAACGAGGAGCT+CGG | + | chr8.3:32653191-32653210 | MS.gene056468:CDS | 45.0% | |
| TCGCACTTCAAACTTGAACG+AGG | + | chr8.3:32653184-32653203 | MS.gene056468:CDS | 45.0% | |
| TCTCTACACACTTGTACTGC+AGG | - | chr8.3:32651507-32651526 | None:intergenic | 45.0% | |
| TGACATGTCCATAAGCTCTC+TGG | - | chr8.3:32651778-32651797 | None:intergenic | 45.0% | |
| TGTTCACCTCAATATCCTGC+AGG | - | chr8.3:32652350-32652369 | None:intergenic | 45.0% | |
| ! | AAAACGGTTCGGCGAAAAGA+TGG | + | chr8.3:32652949-32652968 | MS.gene056468:CDS | 45.0% |
| ! | AAGCCGAGTTGAGAGAAAGA+TGG | + | chr8.3:32652836-32652855 | MS.gene056468:CDS | 45.0% |
| ! | GATGAATTCCATCGAGTTGC+AGG | - | chr8.3:32653258-32653277 | None:intergenic | 45.0% |
| ! | TCAACTCGGCTTCTTTTCGA+AGG | - | chr8.3:32652828-32652847 | None:intergenic | 45.0% |
| !! | ATCGACATTCGAGTTGGATC+CGG | + | chr8.3:32653664-32653683 | MS.gene056468:CDS | 45.0% |
| !!! | GGCTCCCTCAAGTTTTTTAG+GGG | - | chr8.3:32652143-32652162 | None:intergenic | 45.0% |
| AAGTTGCAGGGTGCACGTAT+AGG | + | chr8.3:32652099-32652118 | MS.gene056468:intron | 50.0% | |
| AGAAGTTGCTGTGGGGAAAG+GGG | - | chr8.3:32652708-32652727 | None:intergenic | 50.0% | |
| AGTTGCAGGGTGCACGTATA+GGG | + | chr8.3:32652100-32652119 | MS.gene056468:intron | 50.0% | |
| CACAGGAAATGTCTCCTACG+AGG | + | chr8.3:32653559-32653578 | MS.gene056468:CDS | 50.0% | |
| CTCGCAGAAGAAGTTGCTGT+GGG | - | chr8.3:32652716-32652735 | None:intergenic | 50.0% | |
| GAAGAAGTTGCTGTGGGGAA+AGG | - | chr8.3:32652710-32652729 | None:intergenic | 50.0% | |
| GTTGGGAGCTTGGAGTTTGA+AGG | + | chr8.3:32652672-32652691 | MS.gene056468:CDS | 50.0% | |
| TCGATCGCTGGTGTAGCTTA+TGG | + | chr8.3:32653284-32653303 | MS.gene056468:CDS | 50.0% | |
| TCGCAGAAGAAGTTGCTGTG+GGG | - | chr8.3:32652715-32652734 | None:intergenic | 50.0% | |
| TCTCGCAGAAGAAGTTGCTG+TGG | - | chr8.3:32652717-32652736 | None:intergenic | 50.0% | |
| TGTCTCACCGTCCAAGTTCA+TGG | - | chr8.3:32652535-32652554 | None:intergenic | 50.0% | |
| ! | ACTCGGCTTCTTTTCGAAGG+TGG | - | chr8.3:32652825-32652844 | None:intergenic | 50.0% |
| ! | GTACTCGTTTGTTGGGAGCT+TGG | + | chr8.3:32652662-32652681 | MS.gene056468:CDS | 50.0% |
| ! | TTTGAAGTGCGAGCATGTGC+CGG | - | chr8.3:32653176-32653195 | None:intergenic | 50.0% |
| !! | TTCGAGTTGGATCCGGTTTC+AGG | + | chr8.3:32653671-32653690 | MS.gene056468:CDS | 50.0% |
| ATCCGGAGATTCAGCCTCGT+AGG | - | chr8.3:32653576-32653595 | None:intergenic | 55.0% | |
| CTCCTACGAGGCTGAATCTC+CGG | + | chr8.3:32653571-32653590 | MS.gene056468:CDS | 55.0% | |
| GCTGGTGTAGCTTATGGTCG+TGG | + | chr8.3:32653290-32653309 | MS.gene056468:CDS | 55.0% | |
| TGAAATACAGCAGCAGCGGC+CGG | - | chr8.3:32653020-32653039 | None:intergenic | 55.0% | |
| GCAGCAGCGGCCGGTCTTTC+TGG | - | chr8.3:32653011-32653030 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 32651266 | 32653802 | 32651266 | ID=MS.gene056468 |
| chr8.3 | mRNA | 32651266 | 32653802 | 32651266 | ID=MS.gene056468.t1;Parent=MS.gene056468 |
| chr8.3 | exon | 32651266 | 32651424 | 32651266 | ID=MS.gene056468.t1.exon1;Parent=MS.gene056468.t1 |
| chr8.3 | CDS | 32651266 | 32651424 | 32651266 | ID=cds.MS.gene056468.t1;Parent=MS.gene056468.t1 |
| chr8.3 | exon | 32652354 | 32653802 | 32652354 | ID=MS.gene056468.t1.exon2;Parent=MS.gene056468.t1 |
| chr8.3 | CDS | 32652354 | 32653802 | 32652354 | ID=cds.MS.gene056468.t1;Parent=MS.gene056468.t1 |
| Gene Sequence |
| Protein sequence |
