Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056977.t1 | XP_024631637.1 | 94.4 | 373 | 20 | 1 | 4 | 376 | 3 | 374 | 5.80E-191 | 676.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056977.t1 | P9WLH5 | 43.1 | 130 | 73 | 1 | 238 | 366 | 4 | 133 | 4.6e-19 | 97.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056977.t1 | A0A396JG07 | 94.4 | 373 | 20 | 1 | 4 | 376 | 3 | 374 | 4.2e-191 | 676.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene056977 | MS.gene57945 | 0.80204 | 6.77E-49 | -1.69E-46 |
MS.gene056977 | MS.gene69001 | 0.802747 | 4.84E-49 | -1.69E-46 |
MS.gene056977 | MS.gene71456 | 0.808022 | 3.80E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056977.t1 | AT1G24090 | 48.787 | 371 | 170 | 8 | 1 | 371 | 1 | 351 | 4.25e-110 | 326 |
MS.gene056977.t1 | AT3G01410 | 51.379 | 290 | 127 | 4 | 90 | 371 | 6 | 289 | 5.22e-100 | 298 |
MS.gene056977.t1 | AT3G01410 | 51.379 | 290 | 127 | 4 | 90 | 371 | 6 | 289 | 5.22e-100 | 298 |
MS.gene056977.t1 | AT5G51080 | 44.293 | 368 | 152 | 6 | 6 | 371 | 4 | 320 | 2.03e-98 | 295 |
MS.gene056977.t1 | AT5G51080 | 44.293 | 368 | 152 | 6 | 6 | 371 | 4 | 320 | 2.03e-98 | 295 |
MS.gene056977.t1 | AT5G51080 | 52.482 | 282 | 94 | 3 | 92 | 371 | 14 | 257 | 4.07e-98 | 292 |
Find 82 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGAGAATGATGTGATTTAAT+TGG | 0.134743 | 2.1:+5169799 | None:intergenic |
TGAAACAGATTGATGGTTTA+TGG | 0.184157 | 2.1:-5163907 | MS.gene056977:intron |
GCGATCTAAAGATGGGAATT+TGG | 0.249032 | 2.1:-5166217 | MS.gene056977:intron |
TTCAGATCAGTCATGTTCTA+AGG | 0.255193 | 2.1:-5163814 | MS.gene056977:CDS |
GGCTGATGCTCAAGCAAATT+TGG | 0.258544 | 2.1:-5162803 | MS.gene056977:CDS |
TTATCACTTCAAAGATTTAT+AGG | 0.263854 | 2.1:-5166126 | MS.gene056977:intron |
AAATTTATCCTTGAGTTCTT+TGG | 0.270072 | 2.1:+5163844 | None:intergenic |
GCTTGTTCCTTGTCCTTTCC+AGG | 0.289132 | 2.1:-5168741 | MS.gene056977:intron |
TATCACTTCAAAGATTTATA+GGG | 0.318536 | 2.1:-5166125 | MS.gene056977:intron |
TGAATATCGTGCAATGATAT+TGG | 0.323327 | 2.1:-5166065 | MS.gene056977:CDS |
CAAGTTAGATCGTGCTGCTC+TGG | 0.340543 | 2.1:-5167154 | MS.gene056977:CDS |
GAGAATGATGTGATTTAATT+GGG | 0.367152 | 2.1:+5169800 | None:intergenic |
TATCCTTTGTATACACTAAC+AGG | 0.369474 | 2.1:+5168866 | None:intergenic |
AATTTGGCCGTTAATCTTGC+TGG | 0.371744 | 2.1:-5162787 | MS.gene056977:intron |
GAACTTATCTACATTGTATA+AGG | 0.377831 | 2.1:-5163870 | MS.gene056977:CDS |
TTCTACATGAAACAGATTGA+TGG | 0.383985 | 2.1:-5163914 | MS.gene056977:intron |
TTCTACAGATGGCCAAGTTC+AGG | 0.388377 | 2.1:-5162670 | MS.gene056977:intron |
GAGAACGGTTTGCTACGAAT+TGG | 0.405814 | 2.1:+5169851 | None:intergenic |
GTCCCCTTGTATAGAGATAC+TGG | 0.409155 | 2.1:+5166012 | None:intergenic |
AGCTTCCACCTTGTGCAACT+TGG | 0.418444 | 2.1:+5169690 | None:intergenic |
ATTGTTTAGCAGAAAGCAAC+TGG | 0.423491 | 2.1:-5167216 | MS.gene056977:intron |
TGCATTTGATGTGGTCCCTT+GGG | 0.427113 | 2.1:+5168106 | None:intergenic |
CTGCATTTGATGTGGTCCCT+TGG | 0.432302 | 2.1:+5168105 | None:intergenic |
AGAACGGTTTGCTACGAATT+GGG | 0.435837 | 2.1:+5169852 | None:intergenic |
GAATATCGTGCAATGATATT+GGG | 0.438564 | 2.1:-5166064 | MS.gene056977:CDS |
CTACATACTCTTCCTGAACT+TGG | 0.442911 | 2.1:+5162658 | None:intergenic |
GATTTGAAAGAGGATTTGTT+TGG | 0.443266 | 2.1:-5168767 | MS.gene056977:CDS |
AGCCTCACCAGCAAGATTAA+CGG | 0.446430 | 2.1:+5162780 | None:intergenic |
TCAAGCTCAAGTTGGATCTT+CGG | 0.449526 | 2.1:-5169572 | MS.gene056977:intron |
TAGAGCCTCTGATTTGAAAG+AGG | 0.474768 | 2.1:-5168777 | MS.gene056977:CDS |
GGTGCATCAAAAGGAAATCC+TGG | 0.488807 | 2.1:-5166264 | MS.gene056977:CDS |
TAACTTGACTTGCTTTCTCA+AGG | 0.499915 | 2.1:+5167170 | None:intergenic |
GAATTCGATGGTGCATCAAA+AGG | 0.500046 | 2.1:-5166273 | MS.gene056977:CDS |
AAGTTAGATCGTGCTGCTCT+GGG | 0.500929 | 2.1:-5167153 | MS.gene056977:CDS |
AGCTGAAACGACGATGGATA+AGG | 0.501427 | 2.1:-5169671 | MS.gene056977:CDS |
TTGGGTTGTTCTTGCGAGGA+TGG | 0.509421 | 2.1:+5169870 | None:intergenic |
AAAGGAAATCCTGGAAAAGC+TGG | 0.513026 | 2.1:-5166255 | MS.gene056977:CDS |
GCTGTTCTGCGATCTAAAGA+TGG | 0.516726 | 2.1:-5166225 | MS.gene056977:CDS |
CTCTAAACTTGTGTGCATGC+AGG | 0.521677 | 2.1:-5165990 | MS.gene056977:intron |
ACTCATTCTCAAGCTCAAGT+TGG | 0.529411 | 2.1:-5169580 | MS.gene056977:CDS |
TTCACCAGTATCTCTATACA+AGG | 0.534023 | 2.1:-5166016 | MS.gene056977:CDS |
TATAGGGTTCGTGAAGGTGT+GGG | 0.534380 | 2.1:-5166109 | MS.gene056977:CDS |
AACAAATTGAGAACGAAATG+AGG | 0.537238 | 2.1:+5169771 | None:intergenic |
GTAAGGAAAGGGGATGTTGT+TGG | 0.539606 | 2.1:-5169619 | MS.gene056977:CDS |
CAAATCCTCTTTCAAATCAG+AGG | 0.541089 | 2.1:+5168772 | None:intergenic |
ACTTGTATTGTTGAATTCGA+TGG | 0.542427 | 2.1:-5166285 | MS.gene056977:CDS |
CGAATTGGGTTGTTCTTGCG+AGG | 0.550711 | 2.1:+5169866 | None:intergenic |
GAGGAGTTGTGTGGAGAGAA+CGG | 0.554750 | 2.1:+5169836 | None:intergenic |
AACTTGACTTGCTTTCTCAA+GGG | 0.557807 | 2.1:+5167171 | None:intergenic |
TCAGATCAGTCATGTTCTAA+GGG | 0.560954 | 2.1:-5163813 | MS.gene056977:intron |
TAGGATCCTTCTTCTACCCA+AGG | 0.563692 | 2.1:-5168122 | MS.gene056977:CDS |
TGGATAAGGAAGAAAATGAA+AGG | 0.566422 | 2.1:-5169657 | MS.gene056977:CDS |
TTATAGGGTTCGTGAAGGTG+TGG | 0.569284 | 2.1:-5166110 | MS.gene056977:CDS |
GTGGTCCCTTGGGTAGAAGA+AGG | 0.569864 | 2.1:+5168116 | None:intergenic |
TCTTTAGTCCATGCGAGAGA+AGG | 0.570205 | 2.1:+5168816 | None:intergenic |
TAAGGTGGCCAAAGAACTCA+AGG | 0.571307 | 2.1:-5163852 | MS.gene056977:CDS |
AAACTGCTATTTACCTGGAA+AGG | 0.572285 | 2.1:+5168728 | None:intergenic |
CTGTTCTGCGATCTAAAGAT+GGG | 0.572621 | 2.1:-5166224 | MS.gene056977:CDS |
AATCCTGGAAAAGCTGGTGC+TGG | 0.574330 | 2.1:-5166249 | MS.gene056977:CDS |
ACAGATTGATGGTTTATGGA+AGG | 0.582815 | 2.1:-5163903 | MS.gene056977:intron |
TCTCAAGGGATCTTCAGAGA+TGG | 0.583595 | 2.1:+5167185 | None:intergenic |
ATTTGCTTGAGCATCAGCCT+CGG | 0.592297 | 2.1:+5162807 | None:intergenic |
CAAGTTCAGGAAGAGTATGT+AGG | 0.601445 | 2.1:-5162657 | MS.gene056977:CDS |
TGGTTCTTCCAAGTTGCACA+AGG | 0.602002 | 2.1:-5169698 | MS.gene056977:CDS |
GAGGAGTACCTTCTCTCGCA+TGG | 0.605135 | 2.1:-5168824 | MS.gene056977:CDS |
CACCAGTATCTCTATACAAG+GGG | 0.606584 | 2.1:-5166014 | MS.gene056977:CDS |
CTTATCTACATTGTATAAGG+TGG | 0.608500 | 2.1:-5163867 | MS.gene056977:CDS |
AGTGCTTGAACAAGATATTG+TGG | 0.610016 | 2.1:-5168057 | MS.gene056977:intron |
TTCTTCCAAGTTGCACAAGG+TGG | 0.616108 | 2.1:-5169695 | MS.gene056977:CDS |
AAGATTTATAGGGTTCGTGA+AGG | 0.617042 | 2.1:-5166115 | MS.gene056977:CDS |
AGATGAATCTGCATTTGATG+TGG | 0.617914 | 2.1:+5168097 | None:intergenic |
AGGATCCTTCTTCTACCCAA+GGG | 0.620452 | 2.1:-5168121 | MS.gene056977:CDS |
CTATTTACCTGGAAAGGACA+AGG | 0.621733 | 2.1:+5168734 | None:intergenic |
ATTGGGAATGAGAAAGTGTG+AGG | 0.625366 | 2.1:+5169817 | None:intergenic |
CCTCCTGTTAGTGTATACAA+AGG | 0.645658 | 2.1:-5168869 | MS.gene056977:CDS |
AGAAAGTGTGAGGAGTTGTG+TGG | 0.647121 | 2.1:+5169827 | None:intergenic |
TTCAATGTCGAACGAAACTG+AGG | 0.648109 | 2.1:-5168843 | MS.gene056977:CDS |
TGGTAGATGTGAATGATGAG+AGG | 0.665221 | 2.1:+5169890 | None:intergenic |
TCACCAGTATCTCTATACAA+GGG | 0.668023 | 2.1:-5166015 | MS.gene056977:CDS |
GGTGGAAGCTGAAACGACGA+TGG | 0.673721 | 2.1:-5169677 | MS.gene056977:CDS |
CCTTTGTATACACTAACAGG+AGG | 0.698122 | 2.1:+5168869 | None:intergenic |
TGTCAAGGACTTGAACTCCG+AGG | 0.716795 | 2.1:-5162824 | MS.gene056977:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 5162653 | 5169935 | 5162653 | ID=MS.gene056977 |
chr2.1 | mRNA | 5162653 | 5169935 | 5162653 | ID=MS.gene056977.t1;Parent=MS.gene056977 |
chr2.1 | exon | 5169573 | 5169935 | 5169573 | ID=MS.gene056977.t1.exon1;Parent=MS.gene056977.t1 |
chr2.1 | CDS | 5169573 | 5169935 | 5169573 | ID=cds.MS.gene056977.t1;Parent=MS.gene056977.t1 |
chr2.1 | exon | 5168742 | 5168900 | 5168742 | ID=MS.gene056977.t1.exon2;Parent=MS.gene056977.t1 |
chr2.1 | CDS | 5168742 | 5168900 | 5168742 | ID=cds.MS.gene056977.t1;Parent=MS.gene056977.t1 |
chr2.1 | exon | 5168058 | 5168141 | 5168058 | ID=MS.gene056977.t1.exon3;Parent=MS.gene056977.t1 |
chr2.1 | CDS | 5168058 | 5168141 | 5168058 | ID=cds.MS.gene056977.t1;Parent=MS.gene056977.t1 |
chr2.1 | exon | 5167131 | 5167226 | 5167131 | ID=MS.gene056977.t1.exon4;Parent=MS.gene056977.t1 |
chr2.1 | CDS | 5167131 | 5167226 | 5167131 | ID=cds.MS.gene056977.t1;Parent=MS.gene056977.t1 |
chr2.1 | exon | 5166218 | 5166310 | 5166218 | ID=MS.gene056977.t1.exon5;Parent=MS.gene056977.t1 |
chr2.1 | CDS | 5166218 | 5166310 | 5166218 | ID=cds.MS.gene056977.t1;Parent=MS.gene056977.t1 |
chr2.1 | exon | 5165991 | 5166134 | 5165991 | ID=MS.gene056977.t1.exon6;Parent=MS.gene056977.t1 |
chr2.1 | CDS | 5165991 | 5166134 | 5165991 | ID=cds.MS.gene056977.t1;Parent=MS.gene056977.t1 |
chr2.1 | exon | 5163814 | 5163921 | 5163814 | ID=MS.gene056977.t1.exon7;Parent=MS.gene056977.t1 |
chr2.1 | CDS | 5163814 | 5163921 | 5163814 | ID=cds.MS.gene056977.t1;Parent=MS.gene056977.t1 |
chr2.1 | exon | 5162788 | 5162839 | 5162788 | ID=MS.gene056977.t1.exon8;Parent=MS.gene056977.t1 |
chr2.1 | CDS | 5162788 | 5162839 | 5162788 | ID=cds.MS.gene056977.t1;Parent=MS.gene056977.t1 |
chr2.1 | exon | 5162653 | 5162684 | 5162653 | ID=MS.gene056977.t1.exon9;Parent=MS.gene056977.t1 |
chr2.1 | CDS | 5162653 | 5162684 | 5162653 | ID=cds.MS.gene056977.t1;Parent=MS.gene056977.t1 |
Gene Sequence |
Protein sequence |