AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene056985

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056985.t1 MTR_2g099490 94.524 347 17 1 1 345 1 347 0.0 653
MS.gene056985.t1 MTR_2g099490 91.014 345 17 1 1 345 1 331 0.0 622
MS.gene056985.t1 MTR_8g019540 51.176 340 121 12 23 345 7 318 1.48e-83 256
MS.gene056985.t1 MTR_2g041090 55.147 136 49 4 121 253 19 145 8.02e-40 140
MS.gene056985.t1 MTR_2g030170 52.174 115 51 2 168 282 95 205 4.79e-33 122
MS.gene056985.t1 MTR_2g030170 52.174 115 51 2 168 282 128 238 2.27e-32 121
MS.gene056985.t1 MTR_8g037270 56.311 103 40 1 144 246 117 214 1.09e-30 118
MS.gene056985.t1 MTR_3g061510 49.624 133 52 3 114 246 112 229 1.49e-30 119
MS.gene056985.t1 MTR_3g061510 49.624 133 52 3 114 246 132 249 1.88e-30 119
MS.gene056985.t1 MTR_7g106450 51.000 100 40 3 147 246 136 226 4.67e-24 101
MS.gene056985.t1 MTR_1g056530 41.844 141 67 4 108 245 95 223 5.68e-24 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056985.t1 AT1G17590 38.655 357 158 14 10 345 12 328 2.58e-52 176
MS.gene056985.t1 AT1G17590 38.655 357 158 14 10 345 12 328 2.58e-52 176
MS.gene056985.t1 AT1G17590 38.655 357 158 14 10 345 12 328 2.58e-52 176
MS.gene056985.t1 AT1G17590 38.655 357 158 14 10 345 12 328 2.58e-52 176
MS.gene056985.t1 AT1G72830 36.905 336 166 12 2 318 4 312 3.51e-49 168
MS.gene056985.t1 AT1G72830 36.795 337 166 13 2 318 4 313 2.29e-47 163
MS.gene056985.t1 AT1G54160 38.281 256 107 8 22 250 11 242 8.94e-40 142
MS.gene056985.t1 AT3G14020 37.386 329 135 16 20 318 13 300 1.74e-38 139
MS.gene056985.t1 AT3G14020 37.386 329 135 16 20 318 13 300 1.74e-38 139
MS.gene056985.t1 AT1G72830 34.627 335 150 12 2 318 4 287 2.11e-37 136
MS.gene056985.t1 AT1G30500 51.938 129 58 2 130 254 40 168 1.02e-36 131
MS.gene056985.t1 AT1G30500 52.381 126 58 2 130 254 40 164 1.83e-36 130
MS.gene056985.t1 AT2G34720 51.613 124 51 3 123 246 44 158 5.64e-33 121
MS.gene056985.t1 AT2G34720 52.941 119 47 3 128 246 14 123 1.49e-31 117
MS.gene056985.t1 AT2G34720 52.941 119 47 3 128 246 14 123 1.49e-31 117
MS.gene056985.t1 AT3G20910 45.926 135 59 4 117 251 111 231 1.31e-29 115
MS.gene056985.t1 AT5G12840 47.015 134 55 4 116 248 116 234 6.13e-29 113
MS.gene056985.t1 AT5G12840 47.015 134 55 4 116 248 116 234 6.13e-29 113
MS.gene056985.t1 AT5G12840 47.015 134 55 4 116 248 116 234 6.13e-29 113
MS.gene056985.t1 AT5G12840 47.015 134 55 4 116 248 115 233 6.39e-29 113
MS.gene056985.t1 AT5G12840 47.015 134 55 4 116 248 115 233 6.39e-29 113
MS.gene056985.t1 AT5G06510 48.214 112 46 4 149 259 9 109 5.46e-24 97.1
MS.gene056985.t1 AT5G06510 48.214 112 46 4 149 259 9 109 5.46e-24 97.1
MS.gene056985.t1 AT5G06510 47.788 113 47 4 149 260 104 205 1.31e-23 98.6
MS.gene056985.t1 AT5G06510 47.788 113 47 4 149 260 104 205 1.31e-23 98.6
MS.gene056985.t1 AT5G06510 47.788 113 47 4 149 260 104 205 1.31e-23 98.6
MS.gene056985.t1 AT5G06510 47.788 113 47 4 149 260 104 205 1.31e-23 98.6
MS.gene056985.t1 AT5G06510 47.788 113 47 4 149 260 55 156 2.10e-23 97.1
MS.gene056985.t1 AT3G05690 37.500 168 86 6 85 245 44 199 6.81e-20 89.0
MS.gene056985.t1 AT3G05690 37.500 168 86 6 85 245 81 236 9.26e-20 89.0

Find 81 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCTTTGAATTCACATATA+TGG 0.180422 2.1:+5098488 None:intergenic
CACTTTGAAGCTCAAACTTT+TGG 0.192638 2.1:+5100176 None:intergenic
TTCAACCTGATCATGCATTT+TGG 0.229189 2.1:+5098133 None:intergenic
GCGAATCAAGCTTTGATTCT+TGG 0.254868 2.1:+5098222 None:intergenic
TTCATATGGCCAACAATATA+AGG 0.305273 2.1:-5099052 MS.gene056985:intron
TATAGCTGGTGGAAACATTT+TGG 0.306979 2.1:+5098189 None:intergenic
GAGAACCGAGGAGAACAATA+TGG 0.321909 2.1:-5099293 MS.gene056985:CDS
AAATTCTGACCAGCTTCTTC+AGG 0.334629 2.1:-5098571 MS.gene056985:CDS
CTCATCGAATCATCATCTAT+TGG 0.336945 2.1:-5099265 MS.gene056985:CDS
TGCTTTGAATTCACATATAT+GGG 0.338735 2.1:+5098489 None:intergenic
TTCCAGCATTGTTCTTCTAC+TGG 0.343547 2.1:-5099328 MS.gene056985:CDS
GGAGGATGGACGGTGAGATT+TGG 0.358180 2.1:+5099238 None:intergenic
AATTCCCTTGCCATCTGATA+TGG 0.360890 2.1:-5098520 MS.gene056985:CDS
GCTTCTTCAGGGCCAGCTAA+TGG 0.362306 2.1:-5098559 MS.gene056985:CDS
GGCCTACTTTCTGCTTCATA+TGG 0.362322 2.1:-5099066 MS.gene056985:CDS
CACCGTCCATCCTCCACTAA+TGG 0.364359 2.1:-5099230 MS.gene056985:CDS
TATACTTGTTTGAATTTGAA+TGG 0.374199 2.1:-5098170 MS.gene056985:CDS
TATCAGATGGCAAGGGAATT+CGG 0.376992 2.1:+5098523 None:intergenic
TACAAATTACCTTATATTGT+TGG 0.397767 2.1:+5099043 None:intergenic
TCATCGAATCATCATCTATT+GGG 0.410536 2.1:-5099264 MS.gene056985:CDS
CAGAAGCAGTTTCCATTAGC+TGG 0.410914 2.1:+5098547 None:intergenic
TGTCGGGACTCGTGAAGATA+TGG 0.413042 2.1:+5098305 None:intergenic
TATATCTGCTTACAAGTGAT+TGG 0.427209 2.1:+5099200 None:intergenic
AGCACATAACAAACTCATAA+AGG 0.430383 2.1:-5098421 MS.gene056985:CDS
GAGTGTTCAATTTCAAGAAC+AGG 0.445837 2.1:-5100115 MS.gene056985:CDS
TGAAATGTTTCAGCAGCAAC+AGG 0.453392 2.1:-5098063 MS.gene056985:CDS
ATGTCACATACGGATCTCAT+AGG 0.460134 2.1:-5098088 MS.gene056985:CDS
TTCCTTCCAGTCTGAGAAGA+AGG 0.473570 2.1:+5098014 None:intergenic
AATTCTGACCAGCTTCTTCA+GGG 0.474643 2.1:-5098570 MS.gene056985:CDS
AGCAACAGGAGTTAGAGTTC+AGG 0.485902 2.1:-5098049 MS.gene056985:CDS
CAAATTCAAACAAGTATAGC+TGG 0.488784 2.1:+5098175 None:intergenic
GAATTTGAATGGAAATATGT+CGG 0.489962 2.1:-5098159 MS.gene056985:CDS
GGAATCCAAAATGCATGATC+AGG 0.490416 2.1:-5098138 MS.gene056985:CDS
CTTCAATGCATGTACATGTC+GGG 0.500813 2.1:+5098289 None:intergenic
TCGACTGGCTCATCACAATC+AGG 0.502357 2.1:-5100075 MS.gene056985:intron
GAAAGTAGGCCATTGTAGCC+TGG 0.505229 2.1:+5099078 None:intergenic
AACCAGTAGAAGAACAATGC+TGG 0.515161 2.1:+5099326 None:intergenic
TATGAGGCGAAGACAGTGTC+GGG 0.515554 2.1:-5098454 MS.gene056985:CDS
GCACTCCACTATGCTGATCC+AGG 0.517924 2.1:-5099096 MS.gene056985:CDS
TCAGAAGATCTTCCCCATGA+TGG 0.517971 2.1:+5100225 None:intergenic
CACTCAGTGCTTTACTGTTG+TGG 0.518735 2.1:+5100133 None:intergenic
AGCAGTACCATGCTATTATG+AGG 0.519657 2.1:-5098470 MS.gene056985:CDS
AGAACCGAGGAGAACAATAT+GGG 0.525995 2.1:-5099292 MS.gene056985:CDS
AGCATTGAGAAAACGGCCAC+CGG 0.542799 2.1:+5098253 None:intergenic
TTGAAGAGAGCTAGAGGTGC+CGG 0.546127 2.1:-5098272 MS.gene056985:CDS
ACATCCCATATTGTTCTCCT+CGG 0.546379 2.1:+5099288 None:intergenic
CAAAAGTTTGAGCTTCAAAG+TGG 0.551748 2.1:-5100175 MS.gene056985:CDS
TTCCGCCATATCAGATGGCA+AGG 0.552797 2.1:+5098515 None:intergenic
TTAGCTGGCCCTGAAGAAGC+TGG 0.554264 2.1:+5098562 None:intergenic
GTAGAAGAACAATGCTGGAA+AGG 0.555226 2.1:+5099331 None:intergenic
TCATCTTCAACTCAATCGAC+TGG 0.564458 2.1:-5100090 MS.gene056985:CDS
GATTGGCTGTGATCCATTAG+TGG 0.569834 2.1:+5099217 None:intergenic
TCTTCAATGCATGTACATGT+CGG 0.575938 2.1:+5098288 None:intergenic
ACCCTTCTTCTCAGACTGGA+AGG 0.577435 2.1:-5098016 MS.gene056985:CDS
CTCACATGCGGACGGATAGT+CGG 0.579968 2.1:+5097946 None:intergenic
TGTAGCCTGGATCAGCATAG+TGG 0.581932 2.1:+5099091 None:intergenic
ATGATGGACATCCGAAAACA+TGG 0.581989 2.1:+5100241 None:intergenic
GATGCTTCTGATGTCACATA+CGG 0.584773 2.1:-5098098 MS.gene056985:CDS
TATGCTGATCCAGGCTACAA+TGG 0.586886 2.1:-5099087 MS.gene056985:CDS
GGTTCTTCCGCCATATCAGA+TGG 0.587888 2.1:+5098510 None:intergenic
TCCCTTGCCATCTGATATGG+CGG 0.605293 2.1:-5098517 MS.gene056985:CDS
AGTTACCCTTCTTCTCAGAC+TGG 0.606122 2.1:-5098020 MS.gene056985:CDS
ATTCAAACAAGTATAGCTGG+TGG 0.610080 2.1:+5098178 None:intergenic
GGCCATATGAAGCAGAAAGT+AGG 0.615452 2.1:+5099064 None:intergenic
TACAAAGCTGACAAGAATGT+TGG 0.616527 2.1:-5097981 MS.gene056985:CDS
TTATGAGGCGAAGACAGTGT+CGG 0.619331 2.1:-5098455 MS.gene056985:CDS
ATCCATTAGTGGAGGATGGA+CGG 0.629213 2.1:+5099228 None:intergenic
TTACTGTTGTGGCATCCTTG+TGG 0.631295 2.1:+5100144 None:intergenic
CATGCATTGAAGAGAGCTAG+AGG 0.633203 2.1:-5098278 MS.gene056985:CDS
ACAAGTCTCTCACATGCGGA+CGG 0.640777 2.1:+5097938 None:intergenic
GTCTTCGCCTCATAATAGCA+TGG 0.641090 2.1:+5098463 None:intergenic
TCCTTCCAGTCTGAGAAGAA+GGG 0.646710 2.1:+5098015 None:intergenic
TTCTACAAGTCTCTCACATG+CGG 0.648923 2.1:+5097934 None:intergenic
TGTGATCCATTAGTGGAGGA+TGG 0.649182 2.1:+5099224 None:intergenic
ATGGACATCCGAAAACATGG+TGG 0.675905 2.1:+5100244 None:intergenic
AAGAGAGCTAGAGGTGCCGG+TGG 0.677689 2.1:-5098269 MS.gene056985:CDS
TCCGCCATATCAGATGGCAA+GGG 0.679431 2.1:+5098516 None:intergenic
TTCAACATTTAAGAGAACCG+AGG 0.691304 2.1:-5099305 MS.gene056985:CDS
TGGCTGTGATCCATTAGTGG+AGG 0.701564 2.1:+5099220 None:intergenic
AAAGTGGAAGCTCTACCACA+AGG 0.704797 2.1:-5100159 MS.gene056985:CDS
TGGACATCCGAAAACATGGT+GGG 0.707024 2.1:+5100245 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAGAAAAACTTAAATTATA+TGG + chr2.1:5098572-5098591 None:intergenic 10.0%
!!! TTAAGTTTTTCTTATAAAAT+TGG - chr2.1:5098578-5098597 MS.gene056985:CDS 10.0%
!!! TTTTTTATCTCTTTTAATTA+CGG - chr2.1:5099219-5099238 MS.gene056985:CDS 10.0%
!!! AATTATTTTGATTTCTTATG+AGG - chr2.1:5099554-5099573 MS.gene056985:intron 15.0%
!!! TATTTACAAGTTTTTTTTGA+AGG + chr2.1:5099345-5099364 None:intergenic 15.0%
!!! TCTATTTCTTAAATTATTAC+TGG - chr2.1:5098393-5098412 MS.gene056985:intron 15.0%
!! AAAACTTGTAAATAGATGTT+AGG - chr2.1:5099351-5099370 MS.gene056985:intron 20.0%
!! TACAAATTACCTTATATTGT+TGG + chr2.1:5099192-5099211 None:intergenic 20.0%
!! TATACTTGTTTGAATTTGAA+TGG - chr2.1:5100062-5100081 MS.gene056985:intron 20.0%
!! TATATATATCTATGTTCTAG+TGG - chr2.1:5099051-5099070 MS.gene056985:intron 20.0%
!!! TTCTCATTTTGTTATGTTAT+TGG - chr2.1:5098231-5098250 MS.gene056985:CDS 20.0%
! AAATTGGAATTTGTCTTAGA+TGG - chr2.1:5098594-5098613 MS.gene056985:CDS 25.0%
! AGTGCAAATACTAATCAAAT+GGG + chr2.1:5098859-5098878 None:intergenic 25.0%
! CTATATATTGGTAAAAGCTA+TGG - chr2.1:5098542-5098561 MS.gene056985:CDS 25.0%
! GAATTTGAATGGAAATATGT+CGG - chr2.1:5100073-5100092 MS.gene056985:intron 25.0%
! TAATATCAATATCAACATGC+TGG + chr2.1:5099269-5099288 None:intergenic 25.0%
! TGCTGAATTACTTAATTTAG+TGG - chr2.1:5098824-5098843 MS.gene056985:intron 25.0%
!! AGACACTTTTCTCAAAATTT+TGG - chr2.1:5099097-5099116 MS.gene056985:CDS 25.0%
!! GACACTTTTCTCAAAATTTT+GGG - chr2.1:5099098-5099117 MS.gene056985:CDS 25.0%
!! TCAATTTTCAGTCATAACTA+TGG + chr2.1:5099602-5099621 None:intergenic 25.0%
!! TGCTTTGAATTCACATATAT+GGG + chr2.1:5099746-5099765 None:intergenic 25.0%
AGCACATAACAAACTCATAA+AGG - chr2.1:5099811-5099830 MS.gene056985:intron 30.0%
ATGATTTATGAAAGCCGTAA+AGG + chr2.1:5099470-5099489 None:intergenic 30.0%
CAAATTCAAACAAGTATAGC+TGG + chr2.1:5100060-5100079 None:intergenic 30.0%
CAGTGCAAATACTAATCAAA+TGG + chr2.1:5098860-5098879 None:intergenic 30.0%
CCATTTAGAGGAACAAATTA+AGG + chr2.1:5099410-5099429 None:intergenic 30.0%
GTGCAAATACTAATCAAATG+GGG + chr2.1:5098858-5098877 None:intergenic 30.0%
TACTACTGCAGTTTCTTAAT+AGG + chr2.1:5098268-5098287 None:intergenic 30.0%
TATATCTATGTTCTAGTGGA+TGG - chr2.1:5099055-5099074 MS.gene056985:CDS 30.0%
TATATCTGCTTACAAGTGAT+TGG + chr2.1:5099035-5099054 None:intergenic 30.0%
TCATCGAATCATCATCTATT+GGG - chr2.1:5098968-5098987 MS.gene056985:intron 30.0%
TGCAAATACTAATCAAATGG+GGG + chr2.1:5098857-5098876 None:intergenic 30.0%
TTCATATGGCCAACAATATA+AGG - chr2.1:5099180-5099199 MS.gene056985:intron 30.0%
TTGATGGGAAAATAAATGGT+TGG - chr2.1:5098728-5098747 MS.gene056985:intron 30.0%
! ATCGTTGATGGGAAAATAAA+TGG - chr2.1:5098724-5098743 MS.gene056985:intron 30.0%
! CTGCTTTGAATTCACATATA+TGG + chr2.1:5099747-5099766 None:intergenic 30.0%
!! ACACCTTTAATTTGAAGTGT+CGG + chr2.1:5098309-5098328 None:intergenic 30.0%
!! CCTTAATTTGTTCCTCTAAA+TGG - chr2.1:5099407-5099426 MS.gene056985:intron 30.0%
!! GCTTTTTAGCATTGAGAAAA+CGG + chr2.1:5099989-5100008 None:intergenic 30.0%
!! TATAAATTGACTCGCTTATG+AGG + chr2.1:5098682-5098701 None:intergenic 30.0%
!!! TTCTCAAAATTTTGGGTTTC+AGG - chr2.1:5099105-5099124 MS.gene056985:CDS 30.0%
AACAATATTGTTAGTGCGGT+TGG + chr2.1:5099901-5099920 None:intergenic 35.0%
ACACATACACAGCAGATAAT+GGG + chr2.1:5098766-5098785 None:intergenic 35.0%
AGTTATGAAGTAACGTGTCA+AGG + chr2.1:5098641-5098660 None:intergenic 35.0%
ATTATGTAAACCTACCTCCT+TGG - chr2.1:5098509-5098528 MS.gene056985:CDS 35.0%
ATTCAAACAAGTATAGCTGG+TGG + chr2.1:5100057-5100076 None:intergenic 35.0%
CAAAAGTTTGAGCTTCAAAG+TGG - chr2.1:5098057-5098076 MS.gene056985:CDS 35.0%
CAAGATATCTCATCGTTGAT+GGG - chr2.1:5098713-5098732 MS.gene056985:intron 35.0%
CTCATCGAATCATCATCTAT+TGG - chr2.1:5098967-5098986 MS.gene056985:intron 35.0%
GAGTGTTCAATTTCAAGAAC+AGG - chr2.1:5098117-5098136 MS.gene056985:CDS 35.0%
GATTAGTATTTGCACTGTGT+TGG - chr2.1:5098863-5098882 MS.gene056985:intron 35.0%
GCACAACAATATTGTTAGTG+CGG + chr2.1:5099905-5099924 None:intergenic 35.0%
TACAAAGCTGACAAGAATGT+TGG - chr2.1:5100251-5100270 MS.gene056985:CDS 35.0%
TACACATACACAGCAGATAA+TGG + chr2.1:5098767-5098786 None:intergenic 35.0%
TCGAATGTAACTATGTGAGT+CGG + chr2.1:5098368-5098387 None:intergenic 35.0%
TCTTCAATGCATGTACATGT+CGG + chr2.1:5099947-5099966 None:intergenic 35.0%
TGAATGAACAGTCCATTTAG+AGG + chr2.1:5099422-5099441 None:intergenic 35.0%
TTCAACATTTAAGAGAACCG+AGG - chr2.1:5098927-5098946 MS.gene056985:intron 35.0%
! TATAGCTGGTGGAAACATTT+TGG + chr2.1:5100046-5100065 None:intergenic 35.0%
! TGCATATATTTGAGACCAGA+GGG - chr2.1:5099514-5099533 MS.gene056985:intron 35.0%
! TTCAACCTGATCATGCATTT+TGG + chr2.1:5100102-5100121 None:intergenic 35.0%
! TTGCATATATTTGAGACCAG+AGG - chr2.1:5099513-5099532 MS.gene056985:intron 35.0%
! TTTTGGACATGGATGTTTGT+TGG + chr2.1:5098042-5098061 None:intergenic 35.0%
!! CTGTTCTTCATAGCTTTTTC+TGG - chr2.1:5098446-5098465 MS.gene056985:CDS 35.0%
!! CTTCAAATTAAAGGTGTCTC+CGG - chr2.1:5098312-5098331 MS.gene056985:intron 35.0%
!! GAAACATTTTGGTCATGGTT+TGG + chr2.1:5100035-5100054 None:intergenic 35.0%
!!! CACTTTGAAGCTCAAACTTT+TGG + chr2.1:5098059-5098078 None:intergenic 35.0%
AAAACACCAGTTGACAAGCA+CGG + chr2.1:5098213-5098232 None:intergenic 40.0%
AAATTCTGACCAGCTTCTTC+AGG - chr2.1:5099661-5099680 MS.gene056985:intron 40.0%
AACCAGTAGAAGAACAATGC+TGG + chr2.1:5098909-5098928 None:intergenic 40.0%
AATTCCCTTGCCATCTGATA+TGG - chr2.1:5099712-5099731 MS.gene056985:intron 40.0%
AATTCTGACCAGCTTCTTCA+GGG - chr2.1:5099662-5099681 MS.gene056985:intron 40.0%
ACATCCCATATTGTTCTCCT+CGG + chr2.1:5098947-5098966 None:intergenic 40.0%
AGAACCGAGGAGAACAATAT+GGG - chr2.1:5098940-5098959 MS.gene056985:intron 40.0%
AGACATCCATACACAGACAA+CGG + chr2.1:5098428-5098447 None:intergenic 40.0%
AGCAGTACCATGCTATTATG+AGG - chr2.1:5099762-5099781 MS.gene056985:intron 40.0%
ATGTCACATACGGATCTCAT+AGG - chr2.1:5100144-5100163 MS.gene056985:CDS 40.0%
CTTCAATGCATGTACATGTC+GGG + chr2.1:5099946-5099965 None:intergenic 40.0%
GATGCTTCTGATGTCACATA+CGG - chr2.1:5100134-5100153 MS.gene056985:CDS 40.0%
GCAAGATATCTCATCGTTGA+TGG - chr2.1:5098712-5098731 MS.gene056985:intron 40.0%
GGAATCCAAAATGCATGATC+AGG - chr2.1:5100094-5100113 MS.gene056985:CDS 40.0%
GTAGAAGAACAATGCTGGAA+AGG + chr2.1:5098904-5098923 None:intergenic 40.0%
TATATAGCCAGTGCTAACCA+AGG + chr2.1:5098529-5098548 None:intergenic 40.0%
TATCAGATGGCAAGGGAATT+CGG + chr2.1:5099712-5099731 None:intergenic 40.0%
TCAATATCAACATGCTGGAG+TGG + chr2.1:5099264-5099283 None:intergenic 40.0%
TCATCTTCAACTCAATCGAC+TGG - chr2.1:5098142-5098161 MS.gene056985:CDS 40.0%
TGAAATGTTTCAGCAGCAAC+AGG - chr2.1:5100169-5100188 MS.gene056985:CDS 40.0%
TGTCGATGTCTAGTCCTTTA+CGG - chr2.1:5099453-5099472 MS.gene056985:intron 40.0%
TTCCAGCATTGTTCTTCTAC+TGG - chr2.1:5098904-5098923 MS.gene056985:intron 40.0%
TTTGCACTGTGTTGGATACT+AGG - chr2.1:5098871-5098890 MS.gene056985:intron 40.0%
! ATGTTTTCGGATGTCCATCA+TGG - chr2.1:5097993-5098012 MS.gene056985:CDS 40.0%
! GAAGCTCAAACTTTTGGACA+TGG + chr2.1:5098053-5098072 None:intergenic 40.0%
! GCACCGACACTTCAAATTAA+AGG - chr2.1:5098303-5098322 MS.gene056985:CDS 40.0%
! GCGAATCAAGCTTTGATTCT+TGG + chr2.1:5100013-5100032 None:intergenic 40.0%
! TCAACATCCCACCATGTTTT+CGG - chr2.1:5097980-5097999 MS.gene056985:CDS 40.0%
! TGACACTTGTTGCTAGTTAC+AGG - chr2.1:5099619-5099638 MS.gene056985:intron 40.0%
! TGTTCTAGTGGATGGAAGTA+TGG - chr2.1:5099063-5099082 MS.gene056985:CDS 40.0%
! TGTTTTCGGATGTCCATCAT+GGG - chr2.1:5097994-5098013 MS.gene056985:CDS 40.0%
!! ATGATGGACATCCGAAAACA+TGG + chr2.1:5097994-5098013 None:intergenic 40.0%
!! GGTTAGCACTGGCTATATAT+TGG - chr2.1:5098530-5098549 MS.gene056985:CDS 40.0%
!! TGGTGGAAACATTTTGGTCA+TGG + chr2.1:5100040-5100059 None:intergenic 40.0%
AAAGTGGAAGCTCTACCACA+AGG - chr2.1:5098073-5098092 MS.gene056985:CDS 45.0%
AGCAACAGGAGTTAGAGTTC+AGG - chr2.1:5100183-5100202 MS.gene056985:CDS 45.0%
AGTTACCCTTCTTCTCAGAC+TGG - chr2.1:5100212-5100231 MS.gene056985:CDS 45.0%
ATACTAATCAAATGGGGGCG+TGG + chr2.1:5098852-5098871 None:intergenic 45.0%
ATCCATTAGTGGAGGATGGA+CGG + chr2.1:5099007-5099026 None:intergenic 45.0%
ATGGACATCCGAAAACATGG+TGG + chr2.1:5097991-5098010 None:intergenic 45.0%
CAACATGCTGGAGTGGAATA+CGG + chr2.1:5099257-5099276 None:intergenic 45.0%
CAATGTCCGTTGTCTGTGTA+TGG - chr2.1:5098419-5098438 MS.gene056985:CDS 45.0%
CACTCAGTGCTTTACTGTTG+TGG + chr2.1:5098102-5098121 None:intergenic 45.0%
CAGAAGCAGTTTCCATTAGC+TGG + chr2.1:5099688-5099707 None:intergenic 45.0%
CATACACAGACAACGGACAT+TGG + chr2.1:5098421-5098440 None:intergenic 45.0%
CATGCATTGAAGAGAGCTAG+AGG - chr2.1:5099954-5099973 MS.gene056985:intron 45.0%
GAGAACCGAGGAGAACAATA+TGG - chr2.1:5098939-5098958 MS.gene056985:intron 45.0%
GGCCATATGAAGCAGAAAGT+AGG + chr2.1:5099171-5099190 None:intergenic 45.0%
GGCCTACTTTCTGCTTCATA+TGG - chr2.1:5099166-5099185 MS.gene056985:intron 45.0%
GTCTTCGCCTCATAATAGCA+TGG + chr2.1:5099772-5099791 None:intergenic 45.0%
TATGCTGATCCAGGCTACAA+TGG - chr2.1:5099145-5099164 MS.gene056985:intron 45.0%
TCAGAAGATCTTCCCCATGA+TGG + chr2.1:5098010-5098029 None:intergenic 45.0%
TCCTTCCAGTCTGAGAAGAA+GGG + chr2.1:5100220-5100239 None:intergenic 45.0%
TGGACATCCGAAAACATGGT+GGG + chr2.1:5097990-5098009 None:intergenic 45.0%
TGTGATCCATTAGTGGAGGA+TGG + chr2.1:5099011-5099030 None:intergenic 45.0%
TTACTGTTGTGGCATCCTTG+TGG + chr2.1:5098091-5098110 None:intergenic 45.0%
TTAGGAGTAGATGTTGCAGC+TGG - chr2.1:5099369-5099388 MS.gene056985:intron 45.0%
TTATGAGGCGAAGACAGTGT+CGG - chr2.1:5099777-5099796 MS.gene056985:intron 45.0%
TTCCTTCCAGTCTGAGAAGA+AGG + chr2.1:5100221-5100240 None:intergenic 45.0%
! GATTGGCTGTGATCCATTAG+TGG + chr2.1:5099018-5099037 None:intergenic 45.0%
! GTTTTCGGATGTCCATCATG+GGG - chr2.1:5097995-5098014 MS.gene056985:CDS 45.0%
!!! ATAATTCATTAAATTTTAAA+AGG + chr2.1:5099308-5099327 None:intergenic 5.0%
ACCCTTCTTCTCAGACTGGA+AGG - chr2.1:5100216-5100235 MS.gene056985:CDS 50.0%
AGACACGTGTTAGTGTCCGA+AGG - chr2.1:5098339-5098358 MS.gene056985:intron 50.0%
AGCTGAACTAGTAGTCCCTC+TGG + chr2.1:5099532-5099551 None:intergenic 50.0%
ATAGCCAGTGCTAACCAAGG+AGG + chr2.1:5098526-5098545 None:intergenic 50.0%
CACTAACACGTGTCTCACAC+CGG + chr2.1:5098334-5098353 None:intergenic 50.0%
CTAGACATCGACAGAGAGCA+CGG + chr2.1:5099446-5099465 None:intergenic 50.0%
GAAAGTAGGCCATTGTAGCC+TGG + chr2.1:5099157-5099176 None:intergenic 50.0%
GGTTCTTCCGCCATATCAGA+TGG + chr2.1:5099725-5099744 None:intergenic 50.0%
GTGATTCCGTGCTTGTCAAC+TGG - chr2.1:5098204-5098223 MS.gene056985:CDS 50.0%
TATGAGGCGAAGACAGTGTC+GGG - chr2.1:5099778-5099797 MS.gene056985:intron 50.0%
TCCCTTGCCATCTGATATGG+CGG - chr2.1:5099715-5099734 MS.gene056985:intron 50.0%
TCCGCCATATCAGATGGCAA+GGG + chr2.1:5099719-5099738 None:intergenic 50.0%
TGGCTGTGATCCATTAGTGG+AGG + chr2.1:5099015-5099034 None:intergenic 50.0%
TGTAGCCTGGATCAGCATAG+TGG + chr2.1:5099144-5099163 None:intergenic 50.0%
TGTCGGGACTCGTGAAGATA+TGG + chr2.1:5099930-5099949 None:intergenic 50.0%
TTCCGCCATATCAGATGGCA+AGG + chr2.1:5099720-5099739 None:intergenic 50.0%
! AGCATTGAGAAAACGGCCAC+CGG + chr2.1:5099982-5100001 None:intergenic 50.0%
! CTATGTGAGTCGGTGTCCTT+CGG + chr2.1:5098358-5098377 None:intergenic 50.0%
! TCGACTGGCTCATCACAATC+AGG - chr2.1:5098157-5098176 MS.gene056985:CDS 50.0%
! TTGAAGAGAGCTAGAGGTGC+CGG - chr2.1:5099960-5099979 MS.gene056985:intron 50.0%
CACCGTCCATCCTCCACTAA+TGG - chr2.1:5099002-5099021 MS.gene056985:intron 55.0%
CCAGTGCTAACCAAGGAGGT+AGG + chr2.1:5098522-5098541 None:intergenic 55.0%
CCTACCTCCTTGGTTAGCAC+TGG - chr2.1:5098519-5098538 MS.gene056985:CDS 55.0%
GCACTCCACTATGCTGATCC+AGG - chr2.1:5099136-5099155 MS.gene056985:intron 55.0%
GCTTCTTCAGGGCCAGCTAA+TGG - chr2.1:5099673-5099692 MS.gene056985:intron 55.0%
GGAGGATGGACGGTGAGATT+TGG + chr2.1:5098997-5099016 None:intergenic 55.0%
TTAGCTGGCCCTGAAGAAGC+TGG + chr2.1:5099673-5099692 None:intergenic 55.0%
!! AAGAGAGCTAGAGGTGCCGG+TGG - chr2.1:5099963-5099982 MS.gene056985:intron 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 5097947 5100307 5097947 ID=MS.gene056985
chr2.1 mRNA 5097947 5100307 5097947 ID=MS.gene056985.t1;Parent=MS.gene056985
chr2.1 exon 5100076 5100307 5100076 ID=MS.gene056985.t1.exon1;Parent=MS.gene056985.t1
chr2.1 CDS 5100076 5100307 5100076 ID=cds.MS.gene056985.t1;Parent=MS.gene056985.t1
chr2.1 exon 5099213 5099361 5099213 ID=MS.gene056985.t1.exon2;Parent=MS.gene056985.t1
chr2.1 CDS 5099213 5099361 5099213 ID=cds.MS.gene056985.t1;Parent=MS.gene056985.t1
chr2.1 exon 5099053 5099127 5099053 ID=MS.gene056985.t1.exon3;Parent=MS.gene056985.t1
chr2.1 CDS 5099053 5099127 5099053 ID=cds.MS.gene056985.t1;Parent=MS.gene056985.t1
chr2.1 exon 5098413 5098613 5098413 ID=MS.gene056985.t1.exon4;Parent=MS.gene056985.t1
chr2.1 CDS 5098413 5098613 5098413 ID=cds.MS.gene056985.t1;Parent=MS.gene056985.t1
chr2.1 exon 5097947 5098327 5097947 ID=MS.gene056985.t1.exon5;Parent=MS.gene056985.t1
chr2.1 CDS 5097947 5098327 5097947 ID=cds.MS.gene056985.t1;Parent=MS.gene056985.t1
Gene Sequence

>MS.gene056985

ATGAAGTGCTTATGTGAGAAAGACTCTGCTCATTCAACATCCCACCATGTTTTCGGATGTCCATCATGGGGAAGATCTTCTGAATCTGAAGTCCAACAAACATCCATGTCCAAAAGTTTGAGCTTCAAAGTGGAAGCTCTACCACAAGGATGCCACAACAGTAAAGCACTGAGTGTTCAATTTCAAGAACAGGATTCATCTTCAACTCAATCGACTGGCTCATCACAATCAGGTATTTGAATTGAAACACTATTTGTGTGATTCCGTGCTTGTCAACTGGTGTTTTCTCATTTTGTTATGTTATTGGTGTATATATCTCCTATTAAGAAACTGCAGTAGTACTTTGTATCTATGTAGCACCGACACTTCAAATTAAAGGTGTCTCCGGTGTGAGACACGTGTTAGTGTCCGAAGGACACCGACTCACATAGTTACATTCGATTACTTCTATTTCTTAAATTATTACTGGTGCCAATGTCCGTTGTCTGTGTATGGATGTCTGTTCTTCATAGCTTTTTCTGGTGATTGAAACAAAATGAAGTGATAGAAGTATATGATTATGATTATGTAAACCTACCTCCTTGGTTAGCACTGGCTATATATTGGTAAAAGCTATGGTCATCCATATAATTTAAGTTTTTCTTATAAAATTGGAATTTGTCTTAGATGGCTCAATCAAAATAACAAAATACCTTGACACGTTACTTCATAACTCATATTGAGAATTCAGCTCCTCATAAGCGAGTCAATTTATAGAATAATAAAGCAAGATATCTCATCGTTGATGGGAAAATAAATGGTTGGTATTCTAACACACCCATTATCTGCTGTGTATGTGTATGTGTATGTAATAACAACAAATTTTAATGTTTGAGATTGCTGAATTACTTAATTTAGTGGAGCCACGCCCCCATTTGATTAGTATTTGCACTGTGTTGGATACTAGGTCACATTCCTTTCCAGCATTGTTCTTCTACTGGTTCAACATTTAAGAGAACCGAGGAGAACAATATGGGATGTCTCATCGAATCATCATCTATTGGGAGTCCAAATCTCACCGTCCATCCTCCACTAATGGATCACAGCCAATCACTTGTAAGCAGATATATATATCTATGTTCTAGTGGATGGAAGTATGGAACATATATGCAGACACTTTTCTCAAAATTTTGGGTTTCAGGCGCATGTTGCACTCCACTATGCTGATCCAGGCTACAATGGCCTACTTTCTGCTTCATATGGCCAACAATATAAGGTAATTTGTATTCAAGATTTTTTATCTCTTTTAATTACGGTTAATTGTGTTACCGTATTCCACTCCAGCATGTTGATATTGATATTAATATTGTATGCAGTTTCCTTTTAAAATTTAATGAATTATGATTATGATCAAATCCTTCAAAAAAAACTTGTAAATAGATGTTAGGAGTAGATGTTGCAGCTGGTACATCTTGTTTATACCTTAATTTGTTCCTCTAAATGGACTGTTCATTCATCCGTGCTCTCTGTCGATGTCTAGTCCTTTACGGCTTTCATAAATCATGATTACATCAAGACTTCTGTTTTTTGCATATATTTGAGACCAGAGGGACTACTAGTTCAGCTTCAATTATTTTGATTTCTTATGAGGTGTATTAGTTCTCTAACTCGAACCATAGTTATGACTGAAAATTGACACTTGTTGCTAGTTACAGGCTTATAGCATCATGTCATCAAATTCTGACCAGCTTCTTCAGGGCCAGCTAATGGAAACTGCTTCTGTCCGAATTCCCTTGCCATCTGATATGGCGGAAGAACCCATATATGTGAATTCAAAGCAGTACCATGCTATTATGAGGCGAAGACAGTGTCGGGCAAAACTTGAAGCACATAACAAACTCATAAAGGATCGTAAAGTAAGCACACATGCATTTCTGTTTTGTCTCTTCTATAGCATAAAATTTCTCTTAAACCAACCGCACTAACAATATTGTTGTGCAGCCATATCTTCACGAGTCCCGACATGTACATGCATTGAAGAGAGCTAGAGGTGCCGGTGGCCGTTTTCTCAATGCTAAAAAGCTCCAAGAATCAAAGCTTGATTCGCCAAACCATGACCAAAATGTTTCCACCAGCTATACTTGTTTGAATTTGAATGGAAATATGTCGGAATCCAAAATGCATGATCAGGTTGAAAACTACAGAGATGATGCTTCTGATGTCACATACGGATCTCATAGGAATGAAATGTTTCAGCAGCAACAGGAGTTAGAGTTCAGGTTATGCAGTTACCCTTCTTCTCAGACTGGAAGGAACATGCATGATTACAAAGCTGACAAGAATGTTGGTGCGAATCAACGCCGACTATCCGTCCGCATGTGA
Protein sequence

>MS.gene056985.t1

MKCLCEKDSAHSTSHHVFGCPSWGRSSESEVQQTSMSKSLSFKVEALPQGCHNSKALSVQFQEQDSSSTQSTGSSQSGHIPFQHCSSTGSTFKRTEENNMGCLIESSSIGSPNLTVHPPLMDHSQSLAHVALHYADPGYNGLLSASYGQQYKAYSIMSSNSDQLLQGQLMETASVRIPLPSDMAEEPIYVNSKQYHAIMRRRQCRAKLEAHNKLIKDRKPYLHESRHVHALKRARGAGGRFLNAKKLQESKLDSPNHDQNVSTSYTCLNLNGNMSESKMHDQVENYRDDASDVTYGSHRNEMFQQQQELEFRLCSYPSSQTGRNMHDYKADKNVGANQRRLSVRM