Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057043.t1 | AFK49674.1 | 85.1 | 302 | 41 | 1 | 1 | 298 | 1 | 302 | 2.40E-83 | 318.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057043.t1 | Q14919 | 56.0 | 91 | 40 | 0 | 2 | 92 | 5 | 95 | 1.2e-22 | 108.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057043.t1 | I3TAY2 | 85.1 | 302 | 41 | 1 | 1 | 298 | 1 | 302 | 1.8e-83 | 318.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene057043.t1 | TF | NF-YC |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057043 | MS.gene43398 | 0.94302 | 2.55E-102 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057043.t1 | MTR_5g088760 | 91.409 | 291 | 19 | 3 | 1 | 286 | 1 | 290 | 1.91e-164 | 459 |
| MS.gene057043.t1 | MTR_5g088760 | 91.071 | 280 | 19 | 3 | 12 | 286 | 3 | 281 | 2.55e-155 | 436 |
| MS.gene057043.t1 | MTR_5g088760 | 90.876 | 274 | 19 | 3 | 18 | 286 | 1 | 273 | 4.97e-151 | 424 |
| MS.gene057043.t1 | MTR_3g012030 | 48.993 | 298 | 123 | 9 | 1 | 287 | 1 | 280 | 1.02e-77 | 238 |
| MS.gene057043.t1 | MTR_8g041420 | 44.013 | 309 | 136 | 6 | 1 | 287 | 1 | 294 | 5.19e-74 | 229 |
| MS.gene057043.t1 | MTR_3g012030 | 46.263 | 281 | 122 | 9 | 18 | 287 | 1 | 263 | 5.51e-65 | 205 |
| MS.gene057043.t1 | MTR_3g012030 | 37.975 | 237 | 118 | 9 | 62 | 287 | 1 | 219 | 1.21e-32 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057043.t1 | AT5G19490 | 43.667 | 300 | 125 | 8 | 1 | 297 | 1 | 259 | 1.60e-58 | 188 |
| MS.gene057043.t1 | AT3G12480 | 69.173 | 133 | 35 | 1 | 1 | 127 | 1 | 133 | 2.21e-58 | 189 |
Find 62 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTAACTTCCTCGATTTC+TGG | 0.151578 | 5.4:-69902824 | None:intergenic |
| AACTAGCCAACTTAAGTAAA+AGG | 0.241392 | 5.4:+69903116 | MS.gene057043:CDS |
| GTGAGCAAAGTTCCTGATTT+AGG | 0.300821 | 5.4:+69901946 | MS.gene057043:CDS |
| GGAAGGGGCGGTAGGGGTAG+AGG | 0.322327 | 5.4:+69902677 | MS.gene057043:CDS |
| ATGCAAGCTGATGAAGATAT+AGG | 0.348420 | 5.4:+69900685 | MS.gene057043:CDS |
| GCTTAACTTCCTCGATTTCT+GGG | 0.371274 | 5.4:-69902823 | None:intergenic |
| ACTTAAGTTGGCTAGTTGTA+AGG | 0.372538 | 5.4:-69903110 | None:intergenic |
| GGAGACCAAGAGAAGTAAAA+TGG | 0.382690 | 5.4:+69902131 | MS.gene057043:CDS |
| AGGGGTAGAGGCAGGGGACG+TGG | 0.387631 | 5.4:+69902689 | MS.gene057043:CDS |
| TAAAAGGATTGATGAAGATA+TGG | 0.395167 | 5.4:+69903132 | MS.gene057043:CDS |
| TTTCGATTTAAATCTGAATC+CGG | 0.397431 | 5.4:+69902925 | MS.gene057043:CDS |
| GGGGCGGTAGGGGTAGAGGC+AGG | 0.398203 | 5.4:+69902681 | MS.gene057043:CDS |
| GGCGGTAGGGGTAGAGGCAG+GGG | 0.408013 | 5.4:+69902683 | MS.gene057043:CDS |
| TGCAAGCTGATGAAGATATA+GGG | 0.408049 | 5.4:+69900686 | MS.gene057043:CDS |
| AGGGGACGTGGCCGCGGCCA+AGG | 0.424123 | 5.4:+69902701 | MS.gene057043:CDS |
| AGAGGCAGGGGACGTGGCCG+CGG | 0.424913 | 5.4:+69902695 | MS.gene057043:CDS |
| GCAGCAGAACCGCCTAAATC+AGG | 0.433277 | 5.4:-69901958 | None:intergenic |
| GAACAATGCTTAACTTCCTC+AGG | 0.444484 | 5.4:-69902866 | None:intergenic |
| TCCATGTCGTCATCCGGATC+CGG | 0.447116 | 5.4:-69902944 | None:intergenic |
| ACTTCCTCAGGTTCTTTGAC+TGG | 0.454445 | 5.4:-69902854 | None:intergenic |
| TTTCGAACTACCACTTCAGC+TGG | 0.460443 | 5.4:-69902902 | None:intergenic |
| TTAGGCGGTTCTGCTGCAAC+TGG | 0.479475 | 5.4:+69901964 | MS.gene057043:CDS |
| CTTAAGTTGGCTAGTTGTAA+GGG | 0.481167 | 5.4:-69903109 | None:intergenic |
| ATTTCATCCATGTCGTCATC+CGG | 0.486479 | 5.4:-69902950 | None:intergenic |
| ACCAGTGGAAGGGGCGGTAG+GGG | 0.488619 | 5.4:+69902671 | MS.gene057043:CDS |
| TTACAAATGAAAAGCATTCA+CGG | 0.491312 | 5.4:-69900941 | None:intergenic |
| ATACCAGTGGAAGGGGCGGT+AGG | 0.493238 | 5.4:+69902669 | MS.gene057043:CDS |
| TACCAGTGGAAGGGGCGGTA+GGG | 0.494206 | 5.4:+69902670 | MS.gene057043:CDS |
| GAAGATGAACCGGATGGGAT+AGG | 0.503037 | 5.4:-69902986 | None:intergenic |
| ACCCCTACCGCCCCTTCCAC+TGG | 0.506809 | 5.4:-69902672 | None:intergenic |
| TTTAAATCTGAATCCGGATC+CGG | 0.510680 | 5.4:+69902931 | MS.gene057043:CDS |
| GGGCGGTAGGGGTAGAGGCA+GGG | 0.517634 | 5.4:+69902682 | MS.gene057043:CDS |
| CATGCGCATACCAGTGGAAG+GGG | 0.522977 | 5.4:+69902662 | MS.gene057043:CDS |
| TCCGGATCCGGATGACGACA+TGG | 0.537250 | 5.4:+69902943 | MS.gene057043:CDS |
| GACTACTTACAAACTAGAAG+AGG | 0.544073 | 5.4:-69900727 | None:intergenic |
| TGTGAAGCATTGAAGCAAAA+CGG | 0.548283 | 5.4:+69902776 | MS.gene057043:CDS |
| ACCTCCTCTTAGTGACAGCT+TGG | 0.548550 | 5.4:-69901993 | None:intergenic |
| AATTTCAGAAGAGAAGATTG+AGG | 0.553548 | 5.4:+69903039 | MS.gene057043:CDS |
| ATACGAGATAACACTTAGGA+AGG | 0.554816 | 5.4:+69900909 | MS.gene057043:CDS |
| GAACCGGATGGGATAGGAGT+TGG | 0.555156 | 5.4:-69902980 | None:intergenic |
| GAGAAGATTGAGGAATACCC+TGG | 0.559641 | 5.4:+69903049 | MS.gene057043:CDS |
| ATATCAGAAAAGGACCATCC+AGG | 0.563775 | 5.4:-69903067 | None:intergenic |
| GGAAGTTAAGCATTGTTCAC+CGG | 0.563902 | 5.4:+69902871 | MS.gene057043:CDS |
| ACACCAACTCCTATCCCATC+CGG | 0.568917 | 5.4:+69902977 | MS.gene057043:CDS |
| AACATGCGCATACCAGTGGA+AGG | 0.579451 | 5.4:+69902660 | MS.gene057043:CDS |
| ACGACCAAGCTGTCACTAAG+AGG | 0.580960 | 5.4:+69901989 | MS.gene057043:CDS |
| GGTAAGAAAACCAGCTGAAG+TGG | 0.584865 | 5.4:+69902892 | MS.gene057043:CDS |
| TATCAGAAAAGGACCATCCA+GGG | 0.585690 | 5.4:-69903066 | None:intergenic |
| AGATATAGGGAAGATTGCAT+TGG | 0.616410 | 5.4:+69900699 | MS.gene057043:CDS |
| TAATGTAAGCCCAGAAATCG+AGG | 0.616586 | 5.4:+69902814 | MS.gene057043:CDS |
| AGCAAAGTTCCTGATTTAGG+CGG | 0.623500 | 5.4:+69901949 | MS.gene057043:CDS |
| TACGAGATAACACTTAGGAA+GGG | 0.624927 | 5.4:+69900910 | MS.gene057043:CDS |
| GAACATACGAGATAACACTT+AGG | 0.625584 | 5.4:+69900905 | MS.gene057043:CDS |
| CGAGAACATGCGCATACCAG+TGG | 0.633781 | 5.4:+69902656 | MS.gene057043:CDS |
| GGATGGGATAGGAGTTGGTG+TGG | 0.637023 | 5.4:-69902975 | None:intergenic |
| GCGCATACCAGTGGAAGGGG+CGG | 0.637896 | 5.4:+69902665 | MS.gene057043:CDS |
| ACATGCGCATACCAGTGGAA+GGG | 0.649450 | 5.4:+69902661 | MS.gene057043:CDS |
| AGATTGAGGAATACCCTGGA+TGG | 0.653139 | 5.4:+69903053 | MS.gene057043:CDS |
| TTCACCAGTCAAAGAACCTG+AGG | 0.656260 | 5.4:+69902850 | MS.gene057043:CDS |
| CTTACAAACTAGAAGAGGCA+CGG | 0.671946 | 5.4:-69900722 | None:intergenic |
| ACCAAGCTGTCACTAAGAGG+AGG | 0.677608 | 5.4:+69901992 | MS.gene057043:CDS |
| TGACGATGATGACAGCGATG+AGG | 0.685240 | 5.4:+69902110 | MS.gene057043:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAATCAGT+TGG | - | chr5.4:69902565-69902584 | None:intergenic | 10.0% |
| !! | AAATTTAACAAAATTAAACA+AGG | + | chr5.4:69901201-69901220 | MS.gene057043:intron | 10.0% |
| !! | AATTTCACAAAAAAAAAAAT+CGG | + | chr5.4:69901177-69901196 | MS.gene057043:intron | 10.0% |
| !! | ATTGATATATTTATTTATGT+TGG | - | chr5.4:69901632-69901651 | None:intergenic | 10.0% |
| !! | TAGTAAAAAAAAATGTTAAA+AGG | - | chr5.4:69900370-69900389 | None:intergenic | 10.0% |
| !! | TATCTTTAAATTTAATATGT+TGG | - | chr5.4:69901076-69901095 | None:intergenic | 10.0% |
| !!! | TAAATTTTTTTCTTTATAGT+TGG | - | chr5.4:69901050-69901069 | None:intergenic | 10.0% |
| !! | AAGAAAAAATATTCTTCAAT+CGG | - | chr5.4:69901765-69901784 | None:intergenic | 15.0% |
| !! | ATAGTCATAAACAAATTAAA+TGG | - | chr5.4:69901544-69901563 | None:intergenic | 15.0% |
| !! | GTTTCAAAAAACAAAAATTA+GGG | - | chr5.4:69900764-69900783 | None:intergenic | 15.0% |
| !! | TAAACCTAATGATAATAATA+AGG | - | chr5.4:69899460-69899479 | None:intergenic | 15.0% |
| !! | TCCTTTATTAAAATTTGATA+TGG | + | chr5.4:69899913-69899932 | MS.gene057043:intron | 15.0% |
| !! | TGTTTCAAAAAACAAAAATT+AGG | - | chr5.4:69900765-69900784 | None:intergenic | 15.0% |
| !!! | AAAATTGATTTAAGTGATTA+TGG | + | chr5.4:69902477-69902496 | MS.gene057043:intron | 15.0% |
| !!! | AATCACTTAAATCAATTTTT+TGG | - | chr5.4:69902476-69902495 | None:intergenic | 15.0% |
| !!! | ACCATATCAAATTTTAATAA+AGG | - | chr5.4:69899917-69899936 | None:intergenic | 15.0% |
| !!! | TATATTGTAATTTGTAAACA+GGG | + | chr5.4:69900198-69900217 | MS.gene057043:intron | 15.0% |
| !!! | TGAAGAATATTTTTTCTTTT+GGG | + | chr5.4:69901767-69901786 | MS.gene057043:intron | 15.0% |
| !!! | TGATTTGTATTTTGTATATT+AGG | + | chr5.4:69902073-69902092 | MS.gene057043:intron | 15.0% |
| !!! | TTACAGATTAAATTTCTTTT+CGG | - | chr5.4:69901302-69901321 | None:intergenic | 15.0% |
| !!! | TTGAAGAATATTTTTTCTTT+TGG | + | chr5.4:69901766-69901785 | MS.gene057043:intron | 15.0% |
| !!! | TTTTCTGTTTTTGTTTTATT+GGG | + | chr5.4:69899423-69899442 | MS.gene057043:intron | 15.0% |
| !!! | TTTTTCTGTTTTTGTTTTAT+TGG | + | chr5.4:69899422-69899441 | MS.gene057043:intron | 15.0% |
| !! | AAATCTTCTTTACCATAAAT+GGG | + | chr5.4:69900022-69900041 | MS.gene057043:intron | 20.0% |
| !! | ATATAGAACAAATATAACCA+GGG | - | chr5.4:69901830-69901849 | None:intergenic | 20.0% |
| !! | ATTTAGTAAACACTCAATTA+TGG | - | chr5.4:69901460-69901479 | None:intergenic | 20.0% |
| !! | GAATCCTTATTATTATCATT+AGG | + | chr5.4:69899453-69899472 | MS.gene057043:intron | 20.0% |
| !! | TAGCTCAATGTTTATTATTT+GGG | + | chr5.4:69901714-69901733 | MS.gene057043:intron | 20.0% |
| !! | TTGTACAAAATGTTGTTAAA+TGG | - | chr5.4:69902330-69902349 | None:intergenic | 20.0% |
| !!! | ATCATTAGGTTTATTTTTGT+TGG | + | chr5.4:69899467-69899486 | MS.gene057043:intron | 20.0% |
| !!! | ATTTTGATTATATGGATGAT+GGG | + | chr5.4:69899498-69899517 | MS.gene057043:intron | 20.0% |
| !!! | ATTTTTCAATGTCAACTAAT+AGG | + | chr5.4:69901493-69901512 | MS.gene057043:intron | 20.0% |
| !!! | CTATATTGTAATTTGTAAAC+AGG | + | chr5.4:69900197-69900216 | MS.gene057043:intron | 20.0% |
| !!! | GAAGAATATTTTTTCTTTTG+GGG | + | chr5.4:69901768-69901787 | MS.gene057043:intron | 20.0% |
| !!! | TATTTTGATTATATGGATGA+TGG | + | chr5.4:69899497-69899516 | MS.gene057043:intron | 20.0% |
| !!! | TCATTAGGTTTATTTTTGTT+GGG | + | chr5.4:69899468-69899487 | MS.gene057043:intron | 20.0% |
| ! | AAAAATATTCTTCAATCGGT+CGG | - | chr5.4:69901761-69901780 | None:intergenic | 25.0% |
| ! | AAATGTTAAAAGGACAAAAC+TGG | - | chr5.4:69900360-69900379 | None:intergenic | 25.0% |
| ! | AATGAGTGAGAATTCAATAA+TGG | - | chr5.4:69900537-69900556 | None:intergenic | 25.0% |
| ! | AATTGCATAAAATGTCTGTA+AGG | - | chr5.4:69901140-69901159 | None:intergenic | 25.0% |
| ! | AGATAAAATAACTCTGTTGT+GGG | + | chr5.4:69899593-69899612 | MS.gene057043:intron | 25.0% |
| ! | AGCTCAATGTTTATTATTTG+GGG | + | chr5.4:69901715-69901734 | MS.gene057043:intron | 25.0% |
| ! | ATAAAAATACTGTCAGATAG+CGG | - | chr5.4:69902442-69902461 | None:intergenic | 25.0% |
| ! | ATCAGCAAAACAATAACATT+AGG | - | chr5.4:69899813-69899832 | None:intergenic | 25.0% |
| ! | ATGATCAATGATATCAATAG+TGG | + | chr5.4:69900254-69900273 | MS.gene057043:intron | 25.0% |
| ! | CAAAAAACAAATATGCAAAG+TGG | - | chr5.4:69902218-69902237 | None:intergenic | 25.0% |
| ! | CACTCAATTATGGATAAAAT+TGG | - | chr5.4:69901450-69901469 | None:intergenic | 25.0% |
| ! | CGGATTGAAAAAGAAAATAA+CGG | + | chr5.4:69902255-69902274 | MS.gene057043:intron | 25.0% |
| ! | GAAATCTTCTTTACCATAAA+TGG | + | chr5.4:69900021-69900040 | MS.gene057043:intron | 25.0% |
| ! | GATATAGAACAAATATAACC+AGG | - | chr5.4:69901831-69901850 | None:intergenic | 25.0% |
| ! | GTAAATTAAAGCAACAACAA+AGG | + | chr5.4:69901371-69901390 | MS.gene057043:intron | 25.0% |
| ! | GTAGCTCAATGTTTATTATT+TGG | + | chr5.4:69901713-69901732 | MS.gene057043:intron | 25.0% |
| ! | TAAAAGGATTGATGAAGATA+TGG | + | chr5.4:69903132-69903151 | MS.gene057043:CDS | 25.0% |
| ! | TATAGAACAAATATAACCAG+GGG | - | chr5.4:69901829-69901848 | None:intergenic | 25.0% |
| ! | TCAGCAAAACAATAACATTA+GGG | - | chr5.4:69899812-69899831 | None:intergenic | 25.0% |
| ! | TCTATATAATTGTTAGAGAC+TGG | + | chr5.4:69901596-69901615 | MS.gene057043:intron | 25.0% |
| ! | TTGCATAATTGATTATTGAC+AGG | + | chr5.4:69900645-69900664 | MS.gene057043:intron | 25.0% |
| ! | TTTCGATTTAAATCTGAATC+CGG | + | chr5.4:69902925-69902944 | MS.gene057043:CDS | 25.0% |
| !! | AATTACCATTTTACTTCTCT+TGG | - | chr5.4:69902139-69902158 | None:intergenic | 25.0% |
| !! | ATCAATCCTTTTACTTAAGT+TGG | - | chr5.4:69903125-69903144 | None:intergenic | 25.0% |
| !! | CTTTTCTGATATGGAAAAAA+TGG | + | chr5.4:69903078-69903097 | MS.gene057043:CDS | 25.0% |
| !! | TAGTTTATCTGTATTGCTTT+TGG | + | chr5.4:69900977-69900996 | MS.gene057043:intron | 25.0% |
| !! | TATTTCACATAGCGTATTTT+TGG | - | chr5.4:69900301-69900320 | None:intergenic | 25.0% |
| !! | TTGTACAAAATCATGTTTTG+CGG | + | chr5.4:69902342-69902361 | MS.gene057043:intron | 25.0% |
| !! | TTGTGATTTTTGTCTTGTAT+TGG | - | chr5.4:69901330-69901349 | None:intergenic | 25.0% |
| !!! | ATTTTTTTGTACTGTGCTTT+TGG | + | chr5.4:69900787-69900806 | MS.gene057043:intron | 25.0% |
| !!! | CATTAGGTTTATTTTTGTTG+GGG | + | chr5.4:69899469-69899488 | MS.gene057043:intron | 25.0% |
| !!! | CATTTTTTCCATATCAGAAA+AGG | - | chr5.4:69903080-69903099 | None:intergenic | 25.0% |
| !!! | GGTGAAATAAGATTTGTTTT+TGG | + | chr5.4:69899876-69899895 | MS.gene057043:intron | 25.0% |
| !!! | GGTTGGTTATTTTGATTATA+TGG | + | chr5.4:69899490-69899509 | MS.gene057043:intron | 25.0% |
| !!! | TCTTTTCACCATTCATTTTT+TGG | + | chr5.4:69900405-69900424 | MS.gene057043:intron | 25.0% |
| !!! | TTACAAATGAAAAGCATTCA+CGG | - | chr5.4:69900944-69900963 | None:intergenic | 25.0% |
| AAAAGCTTTACATGTCTTCT+TGG | + | chr5.4:69901866-69901885 | MS.gene057043:intron | 30.0% | |
| AAACAAGGACTAATTTCACA+AGG | + | chr5.4:69901216-69901235 | MS.gene057043:intron | 30.0% | |
| AACAGATGCCAAAAAATGAA+TGG | - | chr5.4:69900416-69900435 | None:intergenic | 30.0% | |
| AACATTAGGGTACATAGTAA+GGG | - | chr5.4:69899799-69899818 | None:intergenic | 30.0% | |
| AACTAGCCAACTTAAGTAAA+AGG | + | chr5.4:69903116-69903135 | MS.gene057043:CDS | 30.0% | |
| AACTGTACTACACAATTTGT+CGG | - | chr5.4:69899966-69899985 | None:intergenic | 30.0% | |
| AAGCATATAGGTACTTCATA+AGG | - | chr5.4:69900107-69900126 | None:intergenic | 30.0% | |
| AAGTTCAGTTGTCGAAAATT+AGG | - | chr5.4:69901686-69901705 | None:intergenic | 30.0% | |
| AATTTCAGAAGAGAAGATTG+AGG | + | chr5.4:69903039-69903058 | MS.gene057043:CDS | 30.0% | |
| ATAAAATAACTCTGTTGTGG+GGG | + | chr5.4:69899595-69899614 | MS.gene057043:intron | 30.0% | |
| ATAGAAAACATGACCAAAAG+CGG | - | chr5.4:69900181-69900200 | None:intergenic | 30.0% | |
| CAAATTGTGTAGTACAGTTA+CGG | + | chr5.4:69899967-69899986 | MS.gene057043:intron | 30.0% | |
| CAAGAAGATAAACAGTCATT+TGG | - | chr5.4:69900568-69900587 | None:intergenic | 30.0% | |
| CATCTGTTAGAAATCTGTTT+GGG | + | chr5.4:69900428-69900447 | MS.gene057043:intron | 30.0% | |
| GACAAGAAAAAAAACCGAAA+GGG | - | chr5.4:69899362-69899381 | None:intergenic | 30.0% | |
| GAGATAAAATAACTCTGTTG+TGG | + | chr5.4:69899592-69899611 | MS.gene057043:intron | 30.0% | |
| GATAAAATAACTCTGTTGTG+GGG | + | chr5.4:69899594-69899613 | MS.gene057043:intron | 30.0% | |
| GGTAAAGAAGATTTCATGAT+TGG | - | chr5.4:69900016-69900035 | None:intergenic | 30.0% | |
| TAACATTAGGGTACATAGTA+AGG | - | chr5.4:69899800-69899819 | None:intergenic | 30.0% | |
| TAATTGATTATTGACAGGCT+AGG | + | chr5.4:69900650-69900669 | MS.gene057043:intron | 30.0% | |
| TACTTGCTTAATATTGATGC+CGG | + | chr5.4:69899570-69899589 | MS.gene057043:intron | 30.0% | |
| TGCATTTACATGTCTTTGTT+TGG | + | chr5.4:69900068-69900087 | MS.gene057043:intron | 30.0% | |
| TTGTTCTATATCCTCTTTCT+TGG | + | chr5.4:69901839-69901858 | MS.gene057043:intron | 30.0% | |
| ! | AAAAAACAACCTTTTCAACG+AGG | - | chr5.4:69899385-69899404 | None:intergenic | 30.0% |
| ! | AAAAACAACCTTTTCAACGA+GGG | - | chr5.4:69899384-69899403 | None:intergenic | 30.0% |
| ! | AATGGCTTTTCTGCAATTTA+TGG | + | chr5.4:69902526-69902545 | MS.gene057043:intron | 30.0% |
| ! | AATTGAAACCGAAAGCATAT+AGG | - | chr5.4:69900119-69900138 | None:intergenic | 30.0% |
| ! | AGCTATAACATAGTGGAATA+TGG | - | chr5.4:69902413-69902432 | None:intergenic | 30.0% |
| ! | ATGAAGTACCTATATGCTTT+CGG | + | chr5.4:69900108-69900127 | MS.gene057043:intron | 30.0% |
| ! | ATGCTCATAGATATCGTTTT+GGG | + | chr5.4:69899855-69899874 | MS.gene057043:intron | 30.0% |
| ! | TCCACTATATTATAGCTCTA+TGG | + | chr5.4:69902387-69902406 | MS.gene057043:intron | 30.0% |
| !! | AACTGATTTTGAAGATGAAC+CGG | - | chr5.4:69902999-69903018 | None:intergenic | 30.0% |
| !! | CAACAGAGTTATTTTATCTC+CGG | - | chr5.4:69899592-69899611 | None:intergenic | 30.0% |
| !!! | CAGTTGATAGCTATTTTACT+CGG | - | chr5.4:69902589-69902608 | None:intergenic | 30.0% |
| !!! | TTTCTTTTTCAATCCGTGAT+AGG | - | chr5.4:69902251-69902270 | None:intergenic | 30.0% |
| AAAAACCGAAAGGGTAAACA+AGG | - | chr5.4:69899353-69899372 | None:intergenic | 35.0% | |
| ACTAAGCAAATGCCCATTTA+TGG | - | chr5.4:69900037-69900056 | None:intergenic | 35.0% | |
| AGATATAGGGAAGATTGCAT+TGG | + | chr5.4:69900699-69900718 | MS.gene057043:CDS | 35.0% | |
| ATACGAGATAACACTTAGGA+AGG | + | chr5.4:69900909-69900928 | MS.gene057043:CDS | 35.0% | |
| ATGATACGTTGTCATAGGTT+TGG | + | chr5.4:69900153-69900172 | MS.gene057043:intron | 35.0% | |
| ATGCAAGCTGATGAAGATAT+AGG | + | chr5.4:69900685-69900704 | MS.gene057043:CDS | 35.0% | |
| ATTGAATTCTCACTCATTGC+AGG | + | chr5.4:69900539-69900558 | MS.gene057043:intron | 35.0% | |
| CAGGAATATTACTCAGCAAA+AGG | - | chr5.4:69902185-69902204 | None:intergenic | 35.0% | |
| GAACATACGAGATAACACTT+AGG | + | chr5.4:69900905-69900924 | MS.gene057043:CDS | 35.0% | |
| GACACAATCAAATTGCTAGT+TGG | - | chr5.4:69900494-69900513 | None:intergenic | 35.0% | |
| GACTACTTACAAACTAGAAG+AGG | - | chr5.4:69900730-69900749 | None:intergenic | 35.0% | |
| GCATCTGTTAGAAATCTGTT+TGG | + | chr5.4:69900427-69900446 | MS.gene057043:intron | 35.0% | |
| GCCATAGAGCTATAATATAG+TGG | - | chr5.4:69902391-69902410 | None:intergenic | 35.0% | |
| GCTATAGAGCTATAACATAG+TGG | - | chr5.4:69902420-69902439 | None:intergenic | 35.0% | |
| GGACAAGAAAAAAAACCGAA+AGG | - | chr5.4:69899363-69899382 | None:intergenic | 35.0% | |
| TAAAATAACTCTGTTGTGGG+GGG | + | chr5.4:69899596-69899615 | MS.gene057043:intron | 35.0% | |
| TACGAGATAACACTTAGGAA+GGG | + | chr5.4:69900910-69900929 | MS.gene057043:CDS | 35.0% | |
| TAGAAATCTGTTTGGGAACA+TGG | + | chr5.4:69900435-69900454 | MS.gene057043:intron | 35.0% | |
| TCGGTTTCAATTACCAATAG+CGG | + | chr5.4:69900127-69900146 | MS.gene057043:intron | 35.0% | |
| TGATTATGGAAGTTCACTAC+TGG | + | chr5.4:69902491-69902510 | MS.gene057043:intron | 35.0% | |
| TGCAAGCTGATGAAGATATA+GGG | + | chr5.4:69900686-69900705 | MS.gene057043:CDS | 35.0% | |
| TGTATGCAACTTGGGTTTAA+GGG | + | chr5.4:69899753-69899772 | MS.gene057043:intron | 35.0% | |
| TTGGACCATGTTATATTCAG+CGG | + | chr5.4:69900996-69901015 | MS.gene057043:intron | 35.0% | |
| TTTAAATCTGAATCCGGATC+CGG | + | chr5.4:69902931-69902950 | MS.gene057043:CDS | 35.0% | |
| ! | AGCTAGCAAAATTTTTACGC+AGG | + | chr5.4:69901022-69901041 | MS.gene057043:intron | 35.0% |
| ! | CATGCTCATAGATATCGTTT+TGG | + | chr5.4:69899854-69899873 | MS.gene057043:intron | 35.0% |
| ! | CTAGCAAAATTTTTACGCAG+GGG | + | chr5.4:69901024-69901043 | MS.gene057043:intron | 35.0% |
| ! | GATCTACAGTTTTACTTCCT+TGG | - | chr5.4:69902721-69902740 | None:intergenic | 35.0% |
| ! | GCTAGCAAAATTTTTACGCA+GGG | + | chr5.4:69901023-69901042 | MS.gene057043:intron | 35.0% |
| ! | GTTTAAGGGGTAGTAGTTTT+TGG | + | chr5.4:69899767-69899786 | MS.gene057043:intron | 35.0% |
| ! | TGTTTATTATTTGGGGTAGC+CGG | + | chr5.4:69901722-69901741 | MS.gene057043:intron | 35.0% |
| ! | TTCGACAACTGAACTTGTTT+GGG | + | chr5.4:69901690-69901709 | MS.gene057043:intron | 35.0% |
| ! | TTTCGACAACTGAACTTGTT+TGG | + | chr5.4:69901689-69901708 | MS.gene057043:intron | 35.0% |
| !! | ACTTAAGTTGGCTAGTTGTA+AGG | - | chr5.4:69903113-69903132 | None:intergenic | 35.0% |
| !! | ATTTTGAAGATGAACCGGAT+GGG | - | chr5.4:69902994-69903013 | None:intergenic | 35.0% |
| !! | CTATTTCGTACAAAGTGTTG+AGG | + | chr5.4:69899723-69899742 | MS.gene057043:intron | 35.0% |
| !! | CTTAAGTTGGCTAGTTGTAA+GGG | - | chr5.4:69903112-69903131 | None:intergenic | 35.0% |
| !! | GGTCGGTATGTATTTTTATC+CGG | - | chr5.4:69901744-69901763 | None:intergenic | 35.0% |
| !! | TAGTGGATTGCAGAAAATAG+CGG | + | chr5.4:69900271-69900290 | MS.gene057043:intron | 35.0% |
| !! | TGTGAAGCATTGAAGCAAAA+CGG | + | chr5.4:69902776-69902795 | MS.gene057043:CDS | 35.0% |
| !!! | AGCTTTTAGAACCAAGAAAG+AGG | - | chr5.4:69901853-69901872 | None:intergenic | 35.0% |
| !!! | AGGTTTATTTTTGTTGGGGT+TGG | + | chr5.4:69899473-69899492 | MS.gene057043:intron | 35.0% |
| !!! | GGCTTACATTATTTTGAGTG+TGG | - | chr5.4:69902805-69902824 | None:intergenic | 35.0% |
| AAAGGGTAAACAAGGAAAGG+AGG | - | chr5.4:69899345-69899364 | None:intergenic | 40.0% | |
| AACGTATCATATGCCGCTAT+TGG | - | chr5.4:69900143-69900162 | None:intergenic | 40.0% | |
| ACAGAACTCACGCAAGAAAT+AGG | - | chr5.4:69902042-69902061 | None:intergenic | 40.0% | |
| AGAACAAATATAACCAGGGG+CGG | - | chr5.4:69901826-69901845 | None:intergenic | 40.0% | |
| AGCAAAGTTCCTGATTTAGG+CGG | + | chr5.4:69901949-69901968 | MS.gene057043:CDS | 40.0% | |
| AGCTTAACTTCCTCGATTTC+TGG | - | chr5.4:69902827-69902846 | None:intergenic | 40.0% | |
| ATATCAGAAAAGGACCATCC+AGG | - | chr5.4:69903070-69903089 | None:intergenic | 40.0% | |
| ATTTCATCCATGTCGTCATC+CGG | - | chr5.4:69902953-69902972 | None:intergenic | 40.0% | |
| CTTACAAACTAGAAGAGGCA+CGG | - | chr5.4:69900725-69900744 | None:intergenic | 40.0% | |
| GAACAATGCTTAACTTCCTC+AGG | - | chr5.4:69902869-69902888 | None:intergenic | 40.0% | |
| GCTTAACTTCCTCGATTTCT+GGG | - | chr5.4:69902826-69902845 | None:intergenic | 40.0% | |
| GGAGACCAAGAGAAGTAAAA+TGG | + | chr5.4:69902131-69902150 | MS.gene057043:CDS | 40.0% | |
| GGCATATGATACGTTGTCAT+AGG | + | chr5.4:69900148-69900167 | MS.gene057043:intron | 40.0% | |
| GTATGCAACTTGGGTTTAAG+GGG | + | chr5.4:69899754-69899773 | MS.gene057043:intron | 40.0% | |
| GTGAGCAAAGTTCCTGATTT+AGG | + | chr5.4:69901946-69901965 | MS.gene057043:CDS | 40.0% | |
| GTGTATGCAACTTGGGTTTA+AGG | + | chr5.4:69899752-69899771 | MS.gene057043:intron | 40.0% | |
| TAATGTAAGCCCAGAAATCG+AGG | + | chr5.4:69902814-69902833 | MS.gene057043:CDS | 40.0% | |
| TATCAGAAAAGGACCATCCA+GGG | - | chr5.4:69903069-69903088 | None:intergenic | 40.0% | |
| TGAAATAGCAGACAGTTTCG+CGG | + | chr5.4:69900314-69900333 | MS.gene057043:intron | 40.0% | |
| TTTCTTGTCCCTCGTTGAAA+AGG | + | chr5.4:69899373-69899392 | MS.gene057043:intron | 40.0% | |
| ! | CCTTTCCTTGTTTACCCTTT+CGG | + | chr5.4:69899345-69899364 | MS.gene057043:intron | 40.0% |
| ! | GGAAGTTAAGCATTGTTCAC+CGG | + | chr5.4:69902871-69902890 | MS.gene057043:CDS | 40.0% |
| ! | TCGACAACTGAACTTGTTTG+GGG | + | chr5.4:69901691-69901710 | MS.gene057043:intron | 40.0% |
| ! | TGGATGGTCCTTTTCTGATA+TGG | + | chr5.4:69903069-69903088 | MS.gene057043:CDS | 40.0% |
| !! | GATTTTGAAGATGAACCGGA+TGG | - | chr5.4:69902995-69903014 | None:intergenic | 40.0% |
| !! | TACTGGCTTGTGAATGCAAA+TGG | + | chr5.4:69902508-69902527 | MS.gene057043:intron | 40.0% |
| !! | TATGGATGATGGGTTTCTCT+TGG | + | chr5.4:69899508-69899527 | MS.gene057043:intron | 40.0% |
| !! | TTTCGTACAAAGTGTTGAGG+AGG | + | chr5.4:69899726-69899745 | MS.gene057043:intron | 40.0% |
| !!! | ACTTCAGCTGGTTTTCTTAC+CGG | - | chr5.4:69902893-69902912 | None:intergenic | 40.0% |
| !!! | TTTTTCTTTTGGGGTAGCCA+AGG | + | chr5.4:69901777-69901796 | MS.gene057043:intron | 40.0% |
| ACTTCCTCAGGTTCTTTGAC+TGG | - | chr5.4:69902857-69902876 | None:intergenic | 45.0% | |
| AGATTGAGGAATACCCTGGA+TGG | + | chr5.4:69903053-69903072 | MS.gene057043:CDS | 45.0% | |
| ATATGCAAAGTGGTGTGCAG+TGG | - | chr5.4:69902208-69902227 | None:intergenic | 45.0% | |
| CCGAAAGGGTAAACAAGGAA+AGG | - | chr5.4:69899348-69899367 | None:intergenic | 45.0% | |
| CTTCGCCGCTGAATATAACA+TGG | - | chr5.4:69901004-69901023 | None:intergenic | 45.0% | |
| GAAAGGAGGAACTTACAGCA+GGG | - | chr5.4:69899331-69899350 | None:intergenic | 45.0% | |
| GAAATAGCAGACAGTTTCGC+GGG | + | chr5.4:69900315-69900334 | MS.gene057043:intron | 45.0% | |
| GAGAAGATTGAGGAATACCC+TGG | + | chr5.4:69903049-69903068 | MS.gene057043:CDS | 45.0% | |
| GGTAAGAAAACCAGCTGAAG+TGG | + | chr5.4:69902892-69902911 | MS.gene057043:CDS | 45.0% | |
| GTACAGTTACGGTTCCTGAT+CGG | + | chr5.4:69899978-69899997 | MS.gene057043:intron | 45.0% | |
| TTCACCAGTCAAAGAACCTG+AGG | + | chr5.4:69902850-69902869 | MS.gene057043:CDS | 45.0% | |
| TTGTGCAGTGTTGCCTATCA+CGG | + | chr5.4:69902235-69902254 | MS.gene057043:intron | 45.0% | |
| TTTCGAACTACCACTTCAGC+TGG | - | chr5.4:69902905-69902924 | None:intergenic | 45.0% | |
| AACATGCGCATACCAGTGGA+AGG | + | chr5.4:69902660-69902679 | MS.gene057043:CDS | 50.0% | |
| ACACCAACTCCTATCCCATC+CGG | + | chr5.4:69902977-69902996 | MS.gene057043:CDS | 50.0% | |
| ACATGCGCATACCAGTGGAA+GGG | + | chr5.4:69902661-69902680 | MS.gene057043:CDS | 50.0% | |
| ACCAAGCTGTCACTAAGAGG+AGG | + | chr5.4:69901992-69902011 | MS.gene057043:CDS | 50.0% | |
| ACCTCCTCTTAGTGACAGCT+TGG | - | chr5.4:69901996-69902015 | None:intergenic | 50.0% | |
| ACGACCAAGCTGTCACTAAG+AGG | + | chr5.4:69901989-69902008 | MS.gene057043:CDS | 50.0% | |
| AGTTTCGCGGGCAATTGTGT+CGG | + | chr5.4:69900327-69900346 | MS.gene057043:intron | 50.0% | |
| ATGCTGTGTACTACGGTACG+AGG | + | chr5.4:69900226-69900245 | MS.gene057043:intron | 50.0% | |
| CGGTTCCTTTCATGTAGGAG+GGG | - | chr5.4:69901806-69901825 | None:intergenic | 50.0% | |
| CTCACGCAAGAAATAGGAGC+AGG | - | chr5.4:69902036-69902055 | None:intergenic | 50.0% | |
| GAAGATGAACCGGATGGGAT+AGG | - | chr5.4:69902989-69903008 | None:intergenic | 50.0% | |
| GAGGTGCGTGTATGCAACTT+GGG | + | chr5.4:69899745-69899764 | MS.gene057043:intron | 50.0% | |
| GCGGTTCCTTTCATGTAGGA+GGG | - | chr5.4:69901807-69901826 | None:intergenic | 50.0% | |
| GGAAAGGAGGAACTTACAGC+AGG | - | chr5.4:69899332-69899351 | None:intergenic | 50.0% | |
| GGCTGTCATGCTGTGTACTA+CGG | + | chr5.4:69900219-69900238 | MS.gene057043:intron | 50.0% | |
| TGACGATGATGACAGCGATG+AGG | + | chr5.4:69902110-69902129 | MS.gene057043:CDS | 50.0% | |
| TGCTGTGTACTACGGTACGA+GGG | + | chr5.4:69900227-69900246 | MS.gene057043:intron | 50.0% | |
| ! | ACTCTGTTGTGGGGGGTTTT+TGG | + | chr5.4:69899603-69899622 | MS.gene057043:intron | 50.0% |
| ! | CAGTTTTACTTCCTTGGCCG+CGG | - | chr5.4:69902715-69902734 | None:intergenic | 50.0% |
| ! | CATAGGTTTGGCACCGCTTT+TGG | + | chr5.4:69900165-69900184 | MS.gene057043:intron | 50.0% |
| AGGGGCGGTTCCTTTCATGT+AGG | - | chr5.4:69901811-69901830 | None:intergenic | 55.0% | |
| CATGCGCATACCAGTGGAAG+GGG | + | chr5.4:69902662-69902681 | MS.gene057043:CDS | 55.0% | |
| CGAGAACATGCGCATACCAG+TGG | + | chr5.4:69902656-69902675 | MS.gene057043:CDS | 55.0% | |
| CGCATGTTCTCGCTGTGTGA+AGG | - | chr5.4:69902648-69902667 | None:intergenic | 55.0% | |
| GAACCGGATGGGATAGGAGT+TGG | - | chr5.4:69902983-69903002 | None:intergenic | 55.0% | |
| GCAGCAGAACCGCCTAAATC+AGG | - | chr5.4:69901961-69901980 | None:intergenic | 55.0% | |
| GGCGGTTCCTTTCATGTAGG+AGG | - | chr5.4:69901808-69901827 | None:intergenic | 55.0% | |
| GGCTACCCCTCCTACATGAA+AGG | + | chr5.4:69901798-69901817 | MS.gene057043:intron | 55.0% | |
| TACATGAAAGGAACCGCCCC+TGG | + | chr5.4:69901810-69901829 | MS.gene057043:intron | 55.0% | |
| TCATGTAGGAGGGGTAGCCT+TGG | - | chr5.4:69901797-69901816 | None:intergenic | 55.0% | |
| TCCATGTCGTCATCCGGATC+CGG | - | chr5.4:69902947-69902966 | None:intergenic | 55.0% | |
| TTAGGCGGTTCTGCTGCAAC+TGG | + | chr5.4:69901964-69901983 | MS.gene057043:CDS | 55.0% | |
| ! | GGAGGTGCGTGTATGCAACT+TGG | + | chr5.4:69899744-69899763 | MS.gene057043:intron | 55.0% |
| !! | GGATGGGATAGGAGTTGGTG+TGG | - | chr5.4:69902978-69902997 | None:intergenic | 55.0% |
| ATACCAGTGGAAGGGGCGGT+AGG | + | chr5.4:69902669-69902688 | MS.gene057043:CDS | 60.0% | |
| GCAAAGTGGTGTGCAGTGGC+AGG | - | chr5.4:69902204-69902223 | None:intergenic | 60.0% | |
| TACCAGTGGAAGGGGCGGTA+GGG | + | chr5.4:69902670-69902689 | MS.gene057043:CDS | 60.0% | |
| TCCGGATCCGGATGACGACA+TGG | + | chr5.4:69902943-69902962 | MS.gene057043:CDS | 60.0% | |
| ! | GGATACGCAACGCACCGATC+AGG | - | chr5.4:69899995-69900014 | None:intergenic | 60.0% |
| ACCAGTGGAAGGGGCGGTAG+GGG | + | chr5.4:69902671-69902690 | MS.gene057043:CDS | 65.0% | |
| GCGCATACCAGTGGAAGGGG+CGG | + | chr5.4:69902665-69902684 | MS.gene057043:CDS | 65.0% | |
| ACCCCTACCGCCCCTTCCAC+TGG | - | chr5.4:69902675-69902694 | None:intergenic | 70.0% | |
| AGGGGTAGAGGCAGGGGACG+TGG | + | chr5.4:69902689-69902708 | MS.gene057043:CDS | 70.0% | |
| GGAAGGGGCGGTAGGGGTAG+AGG | + | chr5.4:69902677-69902696 | MS.gene057043:CDS | 70.0% | |
| GGCGGTAGGGGTAGAGGCAG+GGG | + | chr5.4:69902683-69902702 | MS.gene057043:CDS | 70.0% | |
| GGGCGGTAGGGGTAGAGGCA+GGG | + | chr5.4:69902682-69902701 | MS.gene057043:CDS | 70.0% | |
| AGAGGCAGGGGACGTGGCCG+CGG | + | chr5.4:69902695-69902714 | MS.gene057043:CDS | 75.0% | |
| GGGGCGGTAGGGGTAGAGGC+AGG | + | chr5.4:69902681-69902700 | MS.gene057043:CDS | 75.0% | |
| ! | AGGGGACGTGGCCGCGGCCA+AGG | + | chr5.4:69902701-69902720 | MS.gene057043:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 69899302 | 69903177 | 69899302 | ID=MS.gene057043 |
| chr5.4 | mRNA | 69899302 | 69903177 | 69899302 | ID=MS.gene057043.t1;Parent=MS.gene057043 |
| chr5.4 | exon | 69899302 | 69899334 | 69899302 | ID=MS.gene057043.t1.exon1;Parent=MS.gene057043.t1 |
| chr5.4 | CDS | 69899302 | 69899334 | 69899302 | ID=cds.MS.gene057043.t1;Parent=MS.gene057043.t1 |
| chr5.4 | exon | 69900667 | 69900739 | 69900667 | ID=MS.gene057043.t1.exon2;Parent=MS.gene057043.t1 |
| chr5.4 | CDS | 69900667 | 69900739 | 69900667 | ID=cds.MS.gene057043.t1;Parent=MS.gene057043.t1 |
| chr5.4 | exon | 69900866 | 69900959 | 69900866 | ID=MS.gene057043.t1.exon3;Parent=MS.gene057043.t1 |
| chr5.4 | CDS | 69900866 | 69900959 | 69900866 | ID=cds.MS.gene057043.t1;Parent=MS.gene057043.t1 |
| chr5.4 | exon | 69901897 | 69902013 | 69901897 | ID=MS.gene057043.t1.exon4;Parent=MS.gene057043.t1 |
| chr5.4 | CDS | 69901897 | 69902013 | 69901897 | ID=cds.MS.gene057043.t1;Parent=MS.gene057043.t1 |
| chr5.4 | exon | 69902095 | 69902152 | 69902095 | ID=MS.gene057043.t1.exon5;Parent=MS.gene057043.t1 |
| chr5.4 | CDS | 69902095 | 69902152 | 69902095 | ID=cds.MS.gene057043.t1;Parent=MS.gene057043.t1 |
| chr5.4 | exon | 69902656 | 69903177 | 69902656 | ID=MS.gene057043.t1.exon6;Parent=MS.gene057043.t1 |
| chr5.4 | CDS | 69902656 | 69903177 | 69902656 | ID=cds.MS.gene057043.t1;Parent=MS.gene057043.t1 |
| Gene Sequence |
| Protein sequence |
