Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43398.t1 | AFK49674.1 | 84.6 | 285 | 40 | 1 | 1 | 281 | 18 | 302 | 2.00E-74 | 289.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43398.t1 | Q14919 | 54.7 | 75 | 34 | 0 | 1 | 75 | 21 | 95 | 5.5e-17 | 89.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43398.t1 | I3TAY2 | 84.6 | 285 | 40 | 1 | 1 | 281 | 18 | 302 | 1.4e-74 | 289.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene43398.t1 | TF | NF-YC |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057043 | MS.gene43398 | 0.94302 | 2.55E-102 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43398.t1 | MTR_5g088760 | 91.241 | 274 | 18 | 3 | 1 | 269 | 1 | 273 | 7.17e-152 | 426 |
| MS.gene43398.t1 | MTR_5g088760 | 91.241 | 274 | 18 | 3 | 1 | 269 | 9 | 281 | 8.55e-152 | 426 |
| MS.gene43398.t1 | MTR_5g088760 | 91.606 | 274 | 17 | 3 | 1 | 269 | 18 | 290 | 9.06e-152 | 426 |
| MS.gene43398.t1 | MTR_3g012030 | 46.619 | 281 | 121 | 9 | 1 | 270 | 1 | 263 | 1.17e-65 | 206 |
| MS.gene43398.t1 | MTR_3g012030 | 46.619 | 281 | 121 | 9 | 1 | 270 | 18 | 280 | 2.42e-65 | 206 |
| MS.gene43398.t1 | MTR_8g041420 | 41.438 | 292 | 134 | 6 | 1 | 270 | 18 | 294 | 1.12e-61 | 197 |
| MS.gene43398.t1 | MTR_3g012030 | 37.975 | 237 | 118 | 9 | 45 | 270 | 1 | 219 | 8.92e-33 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43398.t1 | AT5G19490 | 41.696 | 283 | 121 | 8 | 1 | 280 | 18 | 259 | 7.34e-48 | 160 |
| MS.gene43398.t1 | AT3G12480 | 65.517 | 116 | 34 | 1 | 1 | 110 | 18 | 133 | 8.55e-46 | 156 |
Find 63 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTAACTTCCTCGATTTC+TGG | 0.151578 | 8.4:-1130032 | None:intergenic |
| AACTAGCCAACTTAAGTAAA+AGG | 0.241392 | 8.4:+1130324 | MS.gene43398:CDS |
| GTGAGCAAAGTTCCTGATTT+AGG | 0.300821 | 8.4:+1129152 | MS.gene43398:CDS |
| GGAAGGGGCGGTAGGGGTAG+AGG | 0.322327 | 8.4:+1129885 | MS.gene43398:CDS |
| ATGCAAGCTGATGAAGATAT+AGG | 0.348420 | 8.4:+1127890 | MS.gene43398:CDS |
| GCTTAACTTCCTCGATTTCT+GGG | 0.371274 | 8.4:-1130031 | None:intergenic |
| ACTTAAGTTGGCTAGTTGTA+AGG | 0.372538 | 8.4:-1130318 | None:intergenic |
| GGAGACCAAGAGAAGTAAAA+TGG | 0.382690 | 8.4:+1129337 | MS.gene43398:CDS |
| AGGGGTAGAGGCAGGGGACG+TGG | 0.387631 | 8.4:+1129897 | MS.gene43398:CDS |
| TAAAAGGATTGATGAAGATA+TGG | 0.395167 | 8.4:+1130340 | MS.gene43398:CDS |
| TTTCGATTTAAATCTGAATC+CGG | 0.397431 | 8.4:+1130133 | MS.gene43398:CDS |
| GGGGCGGTAGGGGTAGAGGC+AGG | 0.398203 | 8.4:+1129889 | MS.gene43398:CDS |
| GGCGGTAGGGGTAGAGGCAG+GGG | 0.408013 | 8.4:+1129891 | MS.gene43398:CDS |
| TGCAAGCTGATGAAGATATA+GGG | 0.408049 | 8.4:+1127891 | MS.gene43398:CDS |
| AGGGGACGTGGCCGCGGCCA+AGG | 0.424123 | 8.4:+1129909 | MS.gene43398:CDS |
| AGAGGCAGGGGACGTGGCCG+CGG | 0.424913 | 8.4:+1129903 | MS.gene43398:CDS |
| GCAGCAGAACCGCCTAAATC+AGG | 0.433277 | 8.4:-1129164 | None:intergenic |
| GAACAATGCTTAACTTCCTC+AGG | 0.444484 | 8.4:-1130074 | None:intergenic |
| TCCATGTCGTCATCCGGATC+CGG | 0.447116 | 8.4:-1130152 | None:intergenic |
| ACTTCCTCAGGTTCTTTGAC+TGG | 0.454445 | 8.4:-1130062 | None:intergenic |
| TTTCGAACTACCACTTCAGC+TGG | 0.460443 | 8.4:-1130110 | None:intergenic |
| TTAGGCGGTTCTGCTGCAAC+TGG | 0.479475 | 8.4:+1129170 | MS.gene43398:CDS |
| CTTAAGTTGGCTAGTTGTAA+GGG | 0.481167 | 8.4:-1130317 | None:intergenic |
| ATTTCATCCATGTCGTCATC+CGG | 0.486479 | 8.4:-1130158 | None:intergenic |
| ACCAGTGGAAGGGGCGGTAG+GGG | 0.488619 | 8.4:+1129879 | MS.gene43398:CDS |
| TTACAAATGAAAAGCATTCA+CGG | 0.491312 | 8.4:-1128146 | None:intergenic |
| ATACCAGTGGAAGGGGCGGT+AGG | 0.493238 | 8.4:+1129877 | MS.gene43398:CDS |
| TACCAGTGGAAGGGGCGGTA+GGG | 0.494206 | 8.4:+1129878 | MS.gene43398:CDS |
| GAAGATGAACCGGATGGGAT+AGG | 0.503037 | 8.4:-1130194 | None:intergenic |
| ACCCCTACCGCCCCTTCCAC+TGG | 0.506809 | 8.4:-1129880 | None:intergenic |
| TTTAAATCTGAATCCGGATC+CGG | 0.510680 | 8.4:+1130139 | MS.gene43398:CDS |
| GGGCGGTAGGGGTAGAGGCA+GGG | 0.517634 | 8.4:+1129890 | MS.gene43398:CDS |
| CATGCGCATACCAGTGGAAG+GGG | 0.522977 | 8.4:+1129870 | MS.gene43398:CDS |
| TCCGGATCCGGATGACGACA+TGG | 0.537250 | 8.4:+1130151 | MS.gene43398:CDS |
| GACTACTTACAAACTAGAAG+AGG | 0.544073 | 8.4:-1127932 | None:intergenic |
| TGTGAAGCATTGAAGCAAAA+CGG | 0.548283 | 8.4:+1129984 | MS.gene43398:CDS |
| ACCTCCTCTTAGTGACAGCT+TGG | 0.548550 | 8.4:-1129199 | None:intergenic |
| AATTTCAGAAGAGAAGATTG+AGG | 0.553548 | 8.4:+1130247 | MS.gene43398:CDS |
| CATACGAGATAACACTTAGG+AGG | 0.553719 | 8.4:+1128113 | MS.gene43398:CDS |
| GAACCGGATGGGATAGGAGT+TGG | 0.555156 | 8.4:-1130188 | None:intergenic |
| GAGAAGATTGAGGAATACCC+TGG | 0.559641 | 8.4:+1130257 | MS.gene43398:CDS |
| ATATCAGAAAAGGACCATCC+AGG | 0.563775 | 8.4:-1130275 | None:intergenic |
| GGAAGTTAAGCATTGTTCAC+CGG | 0.563902 | 8.4:+1130079 | MS.gene43398:CDS |
| ACACCAACTCCTATCCCATC+CGG | 0.568917 | 8.4:+1130185 | MS.gene43398:CDS |
| AACATGCGCATACCAGTGGA+AGG | 0.579451 | 8.4:+1129868 | MS.gene43398:CDS |
| ACGACCAAGCTGTCACTAAG+AGG | 0.580960 | 8.4:+1129195 | MS.gene43398:CDS |
| GGTAAGAAAACCAGCTGAAG+TGG | 0.584865 | 8.4:+1130100 | MS.gene43398:CDS |
| TATCAGAAAAGGACCATCCA+GGG | 0.585690 | 8.4:-1130274 | None:intergenic |
| ATACGAGATAACACTTAGGA+GGG | 0.600468 | 8.4:+1128114 | MS.gene43398:CDS |
| AGATATAGGGAAGATTGCAT+TGG | 0.616410 | 8.4:+1127904 | MS.gene43398:CDS |
| TAATGTAAGCCCAGAAATCG+AGG | 0.616586 | 8.4:+1130022 | MS.gene43398:CDS |
| AGCAAAGTTCCTGATTTAGG+CGG | 0.623500 | 8.4:+1129155 | MS.gene43398:CDS |
| CGAGAACATGCGCATACCAG+TGG | 0.633781 | 8.4:+1129864 | MS.gene43398:CDS |
| GGATGGGATAGGAGTTGGTG+TGG | 0.637023 | 8.4:-1130183 | None:intergenic |
| GCGCATACCAGTGGAAGGGG+CGG | 0.637896 | 8.4:+1129873 | MS.gene43398:CDS |
| GAACATACGAGATAACACTT+AGG | 0.637954 | 8.4:+1128110 | MS.gene43398:CDS |
| ACATGCGCATACCAGTGGAA+GGG | 0.649450 | 8.4:+1129869 | MS.gene43398:CDS |
| AGATTGAGGAATACCCTGGA+TGG | 0.653139 | 8.4:+1130261 | MS.gene43398:CDS |
| TTCACCAGTCAAAGAACCTG+AGG | 0.656260 | 8.4:+1130058 | MS.gene43398:CDS |
| CTTACAAACTAGAAGAGGCA+CGG | 0.671946 | 8.4:-1127927 | None:intergenic |
| TACGAGATAACACTTAGGAG+GGG | 0.675136 | 8.4:+1128115 | MS.gene43398:CDS |
| ACCAAGCTGTCACTAAGAGG+AGG | 0.677608 | 8.4:+1129198 | MS.gene43398:CDS |
| TGACGATGATGACAGCGATG+AGG | 0.685240 | 8.4:+1129316 | MS.gene43398:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAATCAGT+TGG | - | chr8.4:1129771-1129790 | None:intergenic | 10.0% |
| !! | AAATTTAACAAAATTAAACA+AGG | + | chr8.4:1128407-1128426 | MS.gene43398:intron | 10.0% |
| !! | ATTGATATATTTATTTATGT+TGG | - | chr8.4:1128838-1128857 | None:intergenic | 10.0% |
| !! | ATTTCACAAAAAAAAAAAAT+CGG | + | chr8.4:1128383-1128402 | MS.gene43398:intron | 10.0% |
| !! | TATCTTTAAATTTAATATGT+TGG | - | chr8.4:1128281-1128300 | None:intergenic | 10.0% |
| !!! | TAAATTTTTTTCTTTATAGT+TGG | - | chr8.4:1128255-1128274 | None:intergenic | 10.0% |
| !! | AAGAAAAAATATTCTTCAAT+CGG | - | chr8.4:1128971-1128990 | None:intergenic | 15.0% |
| !! | ATAGTCATAAACAAATTAAA+TGG | - | chr8.4:1128750-1128769 | None:intergenic | 15.0% |
| !! | GTTTCAAAAAACAAAAAATA+GGG | - | chr8.4:1127969-1127988 | None:intergenic | 15.0% |
| !! | TGTTTCAAAAAACAAAAAAT+AGG | - | chr8.4:1127970-1127989 | None:intergenic | 15.0% |
| !!! | AAAATTGATTTAAGTGATTA+TGG | + | chr8.4:1129683-1129702 | MS.gene43398:intron | 15.0% |
| !!! | AATCACTTAAATCAATTTTT+TGG | - | chr8.4:1129682-1129701 | None:intergenic | 15.0% |
| !!! | TGAAGAATATTTTTTCTTTT+GGG | + | chr8.4:1128973-1128992 | MS.gene43398:intron | 15.0% |
| !!! | TGATTTGTATTTTGTATATT+AGG | + | chr8.4:1129279-1129298 | MS.gene43398:intron | 15.0% |
| !!! | TTACAGATTAAATTTCTTTT+CGG | - | chr8.4:1128508-1128527 | None:intergenic | 15.0% |
| !!! | TTGAAGAATATTTTTTCTTT+TGG | + | chr8.4:1128972-1128991 | MS.gene43398:intron | 15.0% |
| !! | ATATAGAACAAATATAACCA+GGG | - | chr8.4:1129036-1129055 | None:intergenic | 20.0% |
| !! | ATTTAGTAAACACTCAATTA+TGG | - | chr8.4:1128666-1128685 | None:intergenic | 20.0% |
| !! | TAGCTCAATGTTTATTATTT+GGG | + | chr8.4:1128920-1128939 | MS.gene43398:intron | 20.0% |
| !! | TTGTACAAAATGTTGTTAAA+TGG | - | chr8.4:1129536-1129555 | None:intergenic | 20.0% |
| !!! | ATTTTTCAATGTCAACTAAT+AGG | + | chr8.4:1128699-1128718 | MS.gene43398:intron | 20.0% |
| !!! | GAAGAATATTTTTTCTTTTG+GGG | + | chr8.4:1128974-1128993 | MS.gene43398:intron | 20.0% |
| ! | AAAAATATTCTTCAATCGGT+CGG | - | chr8.4:1128967-1128986 | None:intergenic | 25.0% |
| ! | AATTGCATAAAATGTCTGTA+AGG | - | chr8.4:1128345-1128364 | None:intergenic | 25.0% |
| ! | AGCTCAATGTTTATTATTTG+GGG | + | chr8.4:1128921-1128940 | MS.gene43398:intron | 25.0% |
| ! | ATAAAAATACTGTCAGATAG+CGG | - | chr8.4:1129648-1129667 | None:intergenic | 25.0% |
| ! | CAAAAAACAAATATGCAAAG+TGG | - | chr8.4:1129424-1129443 | None:intergenic | 25.0% |
| ! | CACTCAATTATGGATAAAAT+TGG | - | chr8.4:1128656-1128675 | None:intergenic | 25.0% |
| ! | CGGATTGAAAAAGAAAATAA+CGG | + | chr8.4:1129461-1129480 | MS.gene43398:intron | 25.0% |
| ! | GATATAGAACAAATATAACC+AGG | - | chr8.4:1129037-1129056 | None:intergenic | 25.0% |
| ! | GTAAATTAAAGCAACAACAA+AGG | + | chr8.4:1128577-1128596 | MS.gene43398:intron | 25.0% |
| ! | GTAGCTCAATGTTTATTATT+TGG | + | chr8.4:1128919-1128938 | MS.gene43398:intron | 25.0% |
| ! | TAAAAGGATTGATGAAGATA+TGG | + | chr8.4:1130340-1130359 | MS.gene43398:CDS | 25.0% |
| ! | TATAGAACAAATATAACCAG+GGG | - | chr8.4:1129035-1129054 | None:intergenic | 25.0% |
| ! | TCTATATAATTGTTAGAGAC+TGG | + | chr8.4:1128802-1128821 | MS.gene43398:intron | 25.0% |
| ! | TTTCGATTTAAATCTGAATC+CGG | + | chr8.4:1130133-1130152 | MS.gene43398:CDS | 25.0% |
| !! | AATTACCATTTTACTTCTCT+TGG | - | chr8.4:1129345-1129364 | None:intergenic | 25.0% |
| !! | ATCAATCCTTTTACTTAAGT+TGG | - | chr8.4:1130333-1130352 | None:intergenic | 25.0% |
| !! | CTTTTCTGATATGGAAAAAA+TGG | + | chr8.4:1130286-1130305 | MS.gene43398:CDS | 25.0% |
| !! | TAGTTTATCTGTATTGCTTT+TGG | + | chr8.4:1128182-1128201 | MS.gene43398:intron | 25.0% |
| !! | TTGTACAAAATCATGTTTTG+CGG | + | chr8.4:1129548-1129567 | MS.gene43398:intron | 25.0% |
| !! | TTGTGATTTTTGTCTTGTAT+TGG | - | chr8.4:1128536-1128555 | None:intergenic | 25.0% |
| !!! | ATTTTTTTGTACTGTGCTTT+TGG | + | chr8.4:1127992-1128011 | MS.gene43398:intron | 25.0% |
| !!! | CATTTTTTCCATATCAGAAA+AGG | - | chr8.4:1130288-1130307 | None:intergenic | 25.0% |
| !!! | TTACAAATGAAAAGCATTCA+CGG | - | chr8.4:1128149-1128168 | None:intergenic | 25.0% |
| AAAAGCTTTACATGTCTTCT+TGG | + | chr8.4:1129072-1129091 | MS.gene43398:intron | 30.0% | |
| AAACAAGGACTAATTTCACA+AGG | + | chr8.4:1128422-1128441 | MS.gene43398:intron | 30.0% | |
| AACTAGCCAACTTAAGTAAA+AGG | + | chr8.4:1130324-1130343 | MS.gene43398:CDS | 30.0% | |
| AAGTTCAGTTGTCGAAAATT+AGG | - | chr8.4:1128892-1128911 | None:intergenic | 30.0% | |
| AATTTCAGAAGAGAAGATTG+AGG | + | chr8.4:1130247-1130266 | MS.gene43398:CDS | 30.0% | |
| TTGTTCTATATCCTCTTTCT+TGG | + | chr8.4:1129045-1129064 | MS.gene43398:intron | 30.0% | |
| ! | AATGGCTTTTCTGCAATTTA+TGG | + | chr8.4:1129732-1129751 | MS.gene43398:intron | 30.0% |
| ! | AGCTATAACATAGTGGAATA+TGG | - | chr8.4:1129619-1129638 | None:intergenic | 30.0% |
| ! | TCCACTATATTATAGCTCTA+TGG | + | chr8.4:1129593-1129612 | MS.gene43398:intron | 30.0% |
| !! | AACTGATTTTGAAGATGAAC+CGG | - | chr8.4:1130207-1130226 | None:intergenic | 30.0% |
| !!! | CAGTTGATAGCTATTTTACT+CGG | - | chr8.4:1129797-1129816 | None:intergenic | 30.0% |
| !!! | TTTCTTTTTCAATCCGTGAT+AGG | - | chr8.4:1129457-1129476 | None:intergenic | 30.0% |
| AGATATAGGGAAGATTGCAT+TGG | + | chr8.4:1127904-1127923 | MS.gene43398:CDS | 35.0% | |
| ATACGAGATAACACTTAGGA+GGG | + | chr8.4:1128114-1128133 | MS.gene43398:CDS | 35.0% | |
| ATGCAAGCTGATGAAGATAT+AGG | + | chr8.4:1127890-1127909 | MS.gene43398:CDS | 35.0% | |
| CAGGAATATTACTCAGCAAA+AGG | - | chr8.4:1129391-1129410 | None:intergenic | 35.0% | |
| GAACATACGAGATAACACTT+AGG | + | chr8.4:1128110-1128129 | MS.gene43398:CDS | 35.0% | |
| GACTACTTACAAACTAGAAG+AGG | - | chr8.4:1127935-1127954 | None:intergenic | 35.0% | |
| GCCATAGAGCTATAATATAG+TGG | - | chr8.4:1129597-1129616 | None:intergenic | 35.0% | |
| GCTATAGAGCTATAACATAG+TGG | - | chr8.4:1129626-1129645 | None:intergenic | 35.0% | |
| TGATTATGGAAGTTCACTAC+TGG | + | chr8.4:1129697-1129716 | MS.gene43398:intron | 35.0% | |
| TGCAAGCTGATGAAGATATA+GGG | + | chr8.4:1127891-1127910 | MS.gene43398:CDS | 35.0% | |
| TTGGACCATGTTATATTCAG+CGG | + | chr8.4:1128201-1128220 | MS.gene43398:intron | 35.0% | |
| TTTAAATCTGAATCCGGATC+CGG | + | chr8.4:1130139-1130158 | MS.gene43398:CDS | 35.0% | |
| ! | AGCTAGCAAAATTTTTACGC+AGG | + | chr8.4:1128227-1128246 | MS.gene43398:intron | 35.0% |
| ! | CTAGCAAAATTTTTACGCAG+GGG | + | chr8.4:1128229-1128248 | MS.gene43398:intron | 35.0% |
| ! | GATCTACAGTTTTACTTCCT+TGG | - | chr8.4:1129929-1129948 | None:intergenic | 35.0% |
| ! | GCTAGCAAAATTTTTACGCA+GGG | + | chr8.4:1128228-1128247 | MS.gene43398:intron | 35.0% |
| ! | TGTTTATTATTTGGGGTAGC+CGG | + | chr8.4:1128928-1128947 | MS.gene43398:intron | 35.0% |
| ! | TTCGACAACTGAACTTGTTT+GGG | + | chr8.4:1128896-1128915 | MS.gene43398:intron | 35.0% |
| ! | TTTCGACAACTGAACTTGTT+TGG | + | chr8.4:1128895-1128914 | MS.gene43398:intron | 35.0% |
| !! | ACTTAAGTTGGCTAGTTGTA+AGG | - | chr8.4:1130321-1130340 | None:intergenic | 35.0% |
| !! | ATTTTGAAGATGAACCGGAT+GGG | - | chr8.4:1130202-1130221 | None:intergenic | 35.0% |
| !! | CTTAAGTTGGCTAGTTGTAA+GGG | - | chr8.4:1130320-1130339 | None:intergenic | 35.0% |
| !! | GGTCGGTATGTATTTTTATC+CGG | - | chr8.4:1128950-1128969 | None:intergenic | 35.0% |
| !! | TGTGAAGCATTGAAGCAAAA+CGG | + | chr8.4:1129984-1130003 | MS.gene43398:CDS | 35.0% |
| !!! | AGCTTTTAGAACCAAGAAAG+AGG | - | chr8.4:1129059-1129078 | None:intergenic | 35.0% |
| !!! | GGCTTACATTATTTTGAGTG+TGG | - | chr8.4:1130013-1130032 | None:intergenic | 35.0% |
| AGAACAAATATAACCAGGGG+CGG | - | chr8.4:1129032-1129051 | None:intergenic | 40.0% | |
| AGCAAAGTTCCTGATTTAGG+CGG | + | chr8.4:1129155-1129174 | MS.gene43398:CDS | 40.0% | |
| AGCTTAACTTCCTCGATTTC+TGG | - | chr8.4:1130035-1130054 | None:intergenic | 40.0% | |
| ATATCAGAAAAGGACCATCC+AGG | - | chr8.4:1130278-1130297 | None:intergenic | 40.0% | |
| ATTTCATCCATGTCGTCATC+CGG | - | chr8.4:1130161-1130180 | None:intergenic | 40.0% | |
| CATACGAGATAACACTTAGG+AGG | + | chr8.4:1128113-1128132 | MS.gene43398:CDS | 40.0% | |
| CTTACAAACTAGAAGAGGCA+CGG | - | chr8.4:1127930-1127949 | None:intergenic | 40.0% | |
| GAACAATGCTTAACTTCCTC+AGG | - | chr8.4:1130077-1130096 | None:intergenic | 40.0% | |
| GCTTAACTTCCTCGATTTCT+GGG | - | chr8.4:1130034-1130053 | None:intergenic | 40.0% | |
| GGAGACCAAGAGAAGTAAAA+TGG | + | chr8.4:1129337-1129356 | MS.gene43398:CDS | 40.0% | |
| GTGAGCAAAGTTCCTGATTT+AGG | + | chr8.4:1129152-1129171 | MS.gene43398:CDS | 40.0% | |
| TAATGTAAGCCCAGAAATCG+AGG | + | chr8.4:1130022-1130041 | MS.gene43398:CDS | 40.0% | |
| TACGAGATAACACTTAGGAG+GGG | + | chr8.4:1128115-1128134 | MS.gene43398:CDS | 40.0% | |
| TATCAGAAAAGGACCATCCA+GGG | - | chr8.4:1130277-1130296 | None:intergenic | 40.0% | |
| ! | GGAAGTTAAGCATTGTTCAC+CGG | + | chr8.4:1130079-1130098 | MS.gene43398:CDS | 40.0% |
| ! | TCGACAACTGAACTTGTTTG+GGG | + | chr8.4:1128897-1128916 | MS.gene43398:intron | 40.0% |
| ! | TGGATGGTCCTTTTCTGATA+TGG | + | chr8.4:1130277-1130296 | MS.gene43398:CDS | 40.0% |
| !! | GATTTTGAAGATGAACCGGA+TGG | - | chr8.4:1130203-1130222 | None:intergenic | 40.0% |
| !! | TACTGGCTTGTGAATGCAAA+TGG | + | chr8.4:1129714-1129733 | MS.gene43398:intron | 40.0% |
| !!! | ACTTCAGCTGGTTTTCTTAC+CGG | - | chr8.4:1130101-1130120 | None:intergenic | 40.0% |
| !!! | TTTTTCTTTTGGGGTAGCCA+AGG | + | chr8.4:1128983-1129002 | MS.gene43398:intron | 40.0% |
| ACAGAACTCGCGCAAGAAAT+AGG | - | chr8.4:1129248-1129267 | None:intergenic | 45.0% | |
| ACTTCCTCAGGTTCTTTGAC+TGG | - | chr8.4:1130065-1130084 | None:intergenic | 45.0% | |
| AGATTGAGGAATACCCTGGA+TGG | + | chr8.4:1130261-1130280 | MS.gene43398:CDS | 45.0% | |
| ATATGCAAAGTGGTGTGCAG+TGG | - | chr8.4:1129414-1129433 | None:intergenic | 45.0% | |
| CTTCGCCGCTGAATATAACA+TGG | - | chr8.4:1128209-1128228 | None:intergenic | 45.0% | |
| GAGAAGATTGAGGAATACCC+TGG | + | chr8.4:1130257-1130276 | MS.gene43398:CDS | 45.0% | |
| GGTAAGAAAACCAGCTGAAG+TGG | + | chr8.4:1130100-1130119 | MS.gene43398:CDS | 45.0% | |
| TTCACCAGTCAAAGAACCTG+AGG | + | chr8.4:1130058-1130077 | MS.gene43398:CDS | 45.0% | |
| TTGTGCAGTGTTGCCTATCA+CGG | + | chr8.4:1129441-1129460 | MS.gene43398:intron | 45.0% | |
| TTTCGAACTACCACTTCAGC+TGG | - | chr8.4:1130113-1130132 | None:intergenic | 45.0% | |
| AACATGCGCATACCAGTGGA+AGG | + | chr8.4:1129868-1129887 | MS.gene43398:CDS | 50.0% | |
| ACACCAACTCCTATCCCATC+CGG | + | chr8.4:1130185-1130204 | MS.gene43398:CDS | 50.0% | |
| ACATGCGCATACCAGTGGAA+GGG | + | chr8.4:1129869-1129888 | MS.gene43398:CDS | 50.0% | |
| ACCAAGCTGTCACTAAGAGG+AGG | + | chr8.4:1129198-1129217 | MS.gene43398:CDS | 50.0% | |
| ACCTCCTCTTAGTGACAGCT+TGG | - | chr8.4:1129202-1129221 | None:intergenic | 50.0% | |
| ACGACCAAGCTGTCACTAAG+AGG | + | chr8.4:1129195-1129214 | MS.gene43398:CDS | 50.0% | |
| CGGTTCCTTTCATGTAGGAG+GGG | - | chr8.4:1129012-1129031 | None:intergenic | 50.0% | |
| GAAGATGAACCGGATGGGAT+AGG | - | chr8.4:1130197-1130216 | None:intergenic | 50.0% | |
| GCGGTTCCTTTCATGTAGGA+GGG | - | chr8.4:1129013-1129032 | None:intergenic | 50.0% | |
| TGACGATGATGACAGCGATG+AGG | + | chr8.4:1129316-1129335 | MS.gene43398:CDS | 50.0% | |
| ! | CAGTTTTACTTCCTTGGCCG+CGG | - | chr8.4:1129923-1129942 | None:intergenic | 50.0% |
| AGGGGCGGTTCCTTTCATGT+AGG | - | chr8.4:1129017-1129036 | None:intergenic | 55.0% | |
| CATGCGCATACCAGTGGAAG+GGG | + | chr8.4:1129870-1129889 | MS.gene43398:CDS | 55.0% | |
| CGAGAACATGCGCATACCAG+TGG | + | chr8.4:1129864-1129883 | MS.gene43398:CDS | 55.0% | |
| CGCATGTTCTCGCTGTGTGA+AGG | - | chr8.4:1129856-1129875 | None:intergenic | 55.0% | |
| CTCGCGCAAGAAATAGGAGC+AGG | - | chr8.4:1129242-1129261 | None:intergenic | 55.0% | |
| GAACCGGATGGGATAGGAGT+TGG | - | chr8.4:1130191-1130210 | None:intergenic | 55.0% | |
| GCAGCAGAACCGCCTAAATC+AGG | - | chr8.4:1129167-1129186 | None:intergenic | 55.0% | |
| GGCGGTTCCTTTCATGTAGG+AGG | - | chr8.4:1129014-1129033 | None:intergenic | 55.0% | |
| GGCTACCCCTCCTACATGAA+AGG | + | chr8.4:1129004-1129023 | MS.gene43398:intron | 55.0% | |
| TACATGAAAGGAACCGCCCC+TGG | + | chr8.4:1129016-1129035 | MS.gene43398:intron | 55.0% | |
| TCATGTAGGAGGGGTAGCCT+TGG | - | chr8.4:1129003-1129022 | None:intergenic | 55.0% | |
| TCCATGTCGTCATCCGGATC+CGG | - | chr8.4:1130155-1130174 | None:intergenic | 55.0% | |
| TTAGGCGGTTCTGCTGCAAC+TGG | + | chr8.4:1129170-1129189 | MS.gene43398:CDS | 55.0% | |
| !! | GGATGGGATAGGAGTTGGTG+TGG | - | chr8.4:1130186-1130205 | None:intergenic | 55.0% |
| ATACCAGTGGAAGGGGCGGT+AGG | + | chr8.4:1129877-1129896 | MS.gene43398:CDS | 60.0% | |
| GCAAAGTGGTGTGCAGTGGC+AGG | - | chr8.4:1129410-1129429 | None:intergenic | 60.0% | |
| TACCAGTGGAAGGGGCGGTA+GGG | + | chr8.4:1129878-1129897 | MS.gene43398:CDS | 60.0% | |
| TCCGGATCCGGATGACGACA+TGG | + | chr8.4:1130151-1130170 | MS.gene43398:CDS | 60.0% | |
| ACCAGTGGAAGGGGCGGTAG+GGG | + | chr8.4:1129879-1129898 | MS.gene43398:CDS | 65.0% | |
| GCGCATACCAGTGGAAGGGG+CGG | + | chr8.4:1129873-1129892 | MS.gene43398:CDS | 65.0% | |
| ACCCCTACCGCCCCTTCCAC+TGG | - | chr8.4:1129883-1129902 | None:intergenic | 70.0% | |
| AGGGGTAGAGGCAGGGGACG+TGG | + | chr8.4:1129897-1129916 | MS.gene43398:CDS | 70.0% | |
| GGAAGGGGCGGTAGGGGTAG+AGG | + | chr8.4:1129885-1129904 | MS.gene43398:CDS | 70.0% | |
| GGCGGTAGGGGTAGAGGCAG+GGG | + | chr8.4:1129891-1129910 | MS.gene43398:CDS | 70.0% | |
| GGGCGGTAGGGGTAGAGGCA+GGG | + | chr8.4:1129890-1129909 | MS.gene43398:CDS | 70.0% | |
| AGAGGCAGGGGACGTGGCCG+CGG | + | chr8.4:1129903-1129922 | MS.gene43398:CDS | 75.0% | |
| GGGGCGGTAGGGGTAGAGGC+AGG | + | chr8.4:1129889-1129908 | MS.gene43398:CDS | 75.0% | |
| ! | AGGGGACGTGGCCGCGGCCA+AGG | + | chr8.4:1129909-1129928 | MS.gene43398:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 1127890 | 1130385 | 1127890 | ID=MS.gene43398 |
| chr8.4 | mRNA | 1127890 | 1130385 | 1127890 | ID=MS.gene43398.t1;Parent=MS.gene43398 |
| chr8.4 | exon | 1127890 | 1127944 | 1127890 | ID=MS.gene43398.t1.exon1;Parent=MS.gene43398.t1 |
| chr8.4 | CDS | 1127890 | 1127944 | 1127890 | ID=cds.MS.gene43398.t1;Parent=MS.gene43398.t1 |
| chr8.4 | exon | 1128071 | 1128164 | 1128071 | ID=MS.gene43398.t1.exon2;Parent=MS.gene43398.t1 |
| chr8.4 | CDS | 1128071 | 1128164 | 1128071 | ID=cds.MS.gene43398.t1;Parent=MS.gene43398.t1 |
| chr8.4 | exon | 1129103 | 1129219 | 1129103 | ID=MS.gene43398.t1.exon3;Parent=MS.gene43398.t1 |
| chr8.4 | CDS | 1129103 | 1129219 | 1129103 | ID=cds.MS.gene43398.t1;Parent=MS.gene43398.t1 |
| chr8.4 | exon | 1129301 | 1129358 | 1129301 | ID=MS.gene43398.t1.exon4;Parent=MS.gene43398.t1 |
| chr8.4 | CDS | 1129301 | 1129358 | 1129301 | ID=cds.MS.gene43398.t1;Parent=MS.gene43398.t1 |
| chr8.4 | exon | 1129864 | 1130385 | 1129864 | ID=MS.gene43398.t1.exon5;Parent=MS.gene43398.t1 |
| chr8.4 | CDS | 1129864 | 1130385 | 1129864 | ID=cds.MS.gene43398.t1;Parent=MS.gene43398.t1 |
| Gene Sequence |
| Protein sequence |
