Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene05724.t1 | XP_013460282.1 | 89.6 | 1130 | 102 | 2 | 3 | 1125 | 2 | 1123 | 0.00E+00 | 2023.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene05724.t1 | F4IXE7 | 32.3 | 520 | 327 | 8 | 581 | 1091 | 597 | 1100 | 1.1e-73 | 280.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene05724.t1 | A0A072UYY7 | 89.6 | 1130 | 102 | 2 | 3 | 1125 | 2 | 1123 | 0.0e+00 | 2023.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene05724.t1 | TR | PHD |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene05724 | MS.gene42070 | 0.804322 | 2.28E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene05724.t1 | MTR_3g464550 | 92.124 | 1130 | 74 | 3 | 3 | 1125 | 2 | 1123 | 0.0 | 2112 |
MS.gene05724.t1 | MTR_5g071340 | 48.223 | 844 | 385 | 15 | 229 | 1058 | 339 | 1144 | 0.0 | 726 |
MS.gene05724.t1 | MTR_5g071340 | 47.445 | 274 | 121 | 7 | 17 | 273 | 26 | 293 | 2.73e-64 | 238 |
MS.gene05724.t1 | MTR_5g024390 | 41.781 | 438 | 218 | 10 | 595 | 1008 | 1 | 425 | 4.64e-109 | 348 |
MS.gene05724.t1 | MTR_5g024500 | 41.667 | 432 | 215 | 10 | 595 | 1002 | 1 | 419 | 3.98e-108 | 345 |
MS.gene05724.t1 | MTR_7g109640 | 43.333 | 420 | 217 | 10 | 596 | 1006 | 383 | 790 | 3.74e-106 | 352 |
MS.gene05724.t1 | MTR_4g027030 | 66.400 | 250 | 62 | 4 | 3 | 230 | 2 | 251 | 8.04e-101 | 319 |
MS.gene05724.t1 | MTR_3g103110 | 37.527 | 469 | 216 | 9 | 596 | 1002 | 338 | 791 | 5.03e-97 | 327 |
MS.gene05724.t1 | MTR_3g103120 | 40.898 | 423 | 219 | 10 | 596 | 1002 | 425 | 832 | 3.00e-93 | 318 |
MS.gene05724.t1 | MTR_1g103830 | 40.097 | 414 | 235 | 8 | 597 | 1003 | 606 | 1013 | 9.15e-84 | 300 |
MS.gene05724.t1 | MTR_2g078040 | 37.010 | 408 | 252 | 5 | 597 | 1002 | 762 | 1166 | 2.94e-82 | 294 |
MS.gene05724.t1 | MTR_1g072130 | 35.244 | 471 | 281 | 10 | 543 | 1003 | 765 | 1221 | 2.16e-79 | 286 |
MS.gene05724.t1 | MTR_7g095140 | 33.648 | 318 | 186 | 6 | 701 | 1012 | 13 | 311 | 1.32e-59 | 209 |
MS.gene05724.t1 | MTR_3g103160 | 34.606 | 419 | 167 | 10 | 599 | 1002 | 110 | 436 | 3.00e-54 | 196 |
MS.gene05724.t1 | MTR_4g099530 | 26.806 | 526 | 332 | 17 | 492 | 1002 | 11 | 498 | 9.72e-44 | 167 |
MS.gene05724.t1 | MTR_7g102610 | 27.485 | 513 | 282 | 12 | 562 | 1002 | 453 | 947 | 1.22e-43 | 172 |
MS.gene05724.t1 | MTR_1g068930 | 28.132 | 423 | 240 | 10 | 608 | 985 | 472 | 875 | 9.42e-43 | 169 |
MS.gene05724.t1 | MTR_1g068930 | 28.132 | 423 | 240 | 10 | 608 | 985 | 435 | 838 | 9.94e-43 | 169 |
MS.gene05724.t1 | MTR_1g062330 | 27.152 | 453 | 256 | 9 | 608 | 1000 | 362 | 800 | 7.83e-40 | 160 |
MS.gene05724.t1 | MTR_4g056990 | 26.897 | 435 | 238 | 11 | 622 | 1003 | 213 | 620 | 4.57e-37 | 149 |
MS.gene05724.t1 | MTR_4g050090 | 27.130 | 446 | 235 | 14 | 629 | 1006 | 222 | 645 | 3.12e-35 | 145 |
MS.gene05724.t1 | MTR_4g057290 | 25.610 | 410 | 228 | 9 | 629 | 978 | 122 | 514 | 3.55e-32 | 134 |
MS.gene05724.t1 | MTR_1g062330 | 25.714 | 350 | 188 | 8 | 608 | 899 | 362 | 697 | 1.74e-22 | 104 |
MS.gene05724.t1 | MTR_2g084425 | 32.804 | 189 | 113 | 4 | 821 | 1007 | 847 | 1023 | 2.47e-22 | 104 |
MS.gene05724.t1 | MTR_2g084425 | 25.316 | 237 | 118 | 3 | 622 | 810 | 484 | 709 | 1.36e-16 | 85.9 |
MS.gene05724.t1 | MTR_2g084425 | 25.316 | 237 | 118 | 3 | 622 | 810 | 484 | 709 | 1.44e-16 | 85.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene05724.t1 | AT5G58610 | 36.215 | 1099 | 563 | 28 | 12 | 1043 | 23 | 1050 | 0.0 | 653 |
MS.gene05724.t1 | AT5G58610 | 36.490 | 1077 | 553 | 27 | 27 | 1043 | 36 | 1041 | 0.0 | 652 |
MS.gene05724.t1 | AT5G58610 | 36.490 | 1077 | 553 | 27 | 27 | 1043 | 36 | 1041 | 0.0 | 651 |
MS.gene05724.t1 | AT5G58610 | 36.682 | 1055 | 535 | 25 | 12 | 1002 | 23 | 1008 | 0.0 | 648 |
MS.gene05724.t1 | AT5G58610 | 36.682 | 1055 | 535 | 25 | 12 | 1002 | 23 | 1008 | 0.0 | 648 |
MS.gene05724.t1 | AT5G58610 | 35.933 | 1077 | 533 | 30 | 27 | 1043 | 36 | 1015 | 0.0 | 618 |
MS.gene05724.t1 | AT5G58610 | 35.933 | 1077 | 533 | 30 | 27 | 1043 | 36 | 1015 | 0.0 | 617 |
MS.gene05724.t1 | AT5G58610 | 35.394 | 1003 | 515 | 25 | 12 | 950 | 23 | 956 | 0.0 | 581 |
MS.gene05724.t1 | AT5G58610 | 35.678 | 981 | 505 | 24 | 27 | 950 | 36 | 947 | 0.0 | 578 |
MS.gene05724.t1 | AT5G58610 | 34.677 | 943 | 490 | 24 | 27 | 912 | 36 | 909 | 9.27e-171 | 527 |
MS.gene05724.t1 | AT5G58610 | 33.408 | 889 | 471 | 23 | 206 | 1043 | 1 | 819 | 1.69e-145 | 459 |
MS.gene05724.t1 | AT1G05380 | 38.789 | 446 | 260 | 8 | 571 | 1008 | 494 | 934 | 6.18e-91 | 317 |
MS.gene05724.t1 | AT1G05380 | 38.789 | 446 | 260 | 8 | 571 | 1008 | 494 | 934 | 6.18e-91 | 317 |
MS.gene05724.t1 | AT1G05380 | 38.789 | 446 | 260 | 8 | 571 | 1008 | 494 | 934 | 6.18e-91 | 317 |
MS.gene05724.t1 | AT3G14980 | 35.931 | 462 | 278 | 7 | 564 | 1011 | 575 | 1032 | 2.10e-87 | 305 |
MS.gene05724.t1 | AT3G14980 | 35.931 | 462 | 278 | 7 | 564 | 1011 | 530 | 987 | 3.42e-87 | 306 |
MS.gene05724.t1 | AT3G14980 | 35.931 | 462 | 278 | 7 | 564 | 1011 | 575 | 1032 | 5.37e-87 | 306 |
MS.gene05724.t1 | AT3G14980 | 35.931 | 462 | 278 | 7 | 564 | 1011 | 575 | 1032 | 5.37e-87 | 306 |
MS.gene05724.t1 | AT3G14980 | 35.931 | 462 | 278 | 7 | 564 | 1011 | 575 | 1032 | 5.37e-87 | 306 |
MS.gene05724.t1 | AT5G36740 | 31.034 | 638 | 379 | 18 | 412 | 1012 | 353 | 966 | 9.92e-87 | 305 |
MS.gene05724.t1 | AT5G36740 | 31.034 | 638 | 379 | 18 | 412 | 1012 | 353 | 966 | 9.92e-87 | 305 |
MS.gene05724.t1 | AT5G36740 | 30.401 | 648 | 380 | 19 | 412 | 1012 | 200 | 823 | 4.99e-83 | 293 |
MS.gene05724.t1 | AT4G14920 | 36.222 | 450 | 277 | 7 | 570 | 1015 | 553 | 996 | 1.19e-76 | 276 |
MS.gene05724.t1 | AT4G14920 | 36.613 | 437 | 267 | 7 | 570 | 1002 | 553 | 983 | 2.34e-76 | 275 |
MS.gene05724.t1 | AT4G14920 | 36.613 | 437 | 267 | 7 | 570 | 1002 | 553 | 983 | 2.34e-76 | 275 |
MS.gene05724.t1 | AT5G36670 | 28.593 | 654 | 388 | 20 | 412 | 1012 | 353 | 980 | 1.65e-73 | 266 |
MS.gene05724.t1 | AT5G36670 | 28.593 | 654 | 388 | 20 | 412 | 1012 | 353 | 980 | 1.65e-73 | 266 |
MS.gene05724.t1 | AT5G36670 | 28.012 | 664 | 389 | 21 | 412 | 1012 | 200 | 837 | 9.95e-70 | 254 |
MS.gene05724.t1 | AT5G36740 | 30.018 | 563 | 340 | 17 | 412 | 944 | 353 | 891 | 1.34e-69 | 251 |
MS.gene05724.t1 | AT5G36740 | 30.018 | 563 | 340 | 17 | 412 | 944 | 353 | 891 | 1.34e-69 | 251 |
MS.gene05724.t1 | AT5G36670 | 30.018 | 563 | 340 | 17 | 412 | 944 | 353 | 891 | 1.34e-69 | 251 |
MS.gene05724.t1 | AT5G36670 | 28.012 | 664 | 389 | 21 | 412 | 1012 | 353 | 990 | 1.90e-69 | 254 |
MS.gene05724.t1 | AT5G63900 | 43.322 | 307 | 142 | 11 | 704 | 1002 | 258 | 540 | 1.32e-66 | 235 |
MS.gene05724.t1 | AT3G14980 | 33.699 | 365 | 224 | 7 | 564 | 914 | 575 | 935 | 5.94e-59 | 220 |
MS.gene05724.t1 | AT2G27980 | 29.425 | 452 | 239 | 10 | 633 | 1020 | 637 | 1072 | 4.51e-47 | 184 |
MS.gene05724.t1 | AT2G37520 | 28.935 | 432 | 233 | 10 | 624 | 1000 | 401 | 813 | 2.27e-44 | 174 |
MS.gene05724.t1 | AT3G53680 | 27.918 | 437 | 254 | 8 | 624 | 1012 | 418 | 841 | 4.67e-43 | 170 |
MS.gene05724.t1 | AT3G53680 | 27.918 | 437 | 254 | 8 | 624 | 1012 | 420 | 843 | 5.74e-43 | 170 |
MS.gene05724.t1 | AT2G36720 | 26.974 | 456 | 253 | 10 | 608 | 1000 | 533 | 971 | 5.33e-38 | 155 |
MS.gene05724.t1 | AT2G36720 | 26.974 | 456 | 253 | 10 | 608 | 1000 | 533 | 971 | 5.33e-38 | 155 |
Find 249 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACACCTCTTCTTCTATTATT+TGG | 0.106047 | 3.1:-48481342 | None:intergenic |
GGGCACCGTACTGTGCTTTC+TGG | 0.111625 | 3.1:+48481780 | MS.gene05724:CDS |
ATTCAGAAATCGACTATTTC+TGG | 0.151862 | 3.1:+48481438 | MS.gene05724:CDS |
AACCAAGACAGAACATTTAA+AGG | 0.177176 | 3.1:-48481702 | None:intergenic |
CCAGTTGGCAAAACCGAATT+TGG | 0.185947 | 3.1:-48485901 | None:intergenic |
CCTAATCCTCCCACGTTTAC+TGG | 0.211548 | 3.1:-48480140 | None:intergenic |
CACATAACTTCCGGATTTAC+TGG | 0.222960 | 3.1:-48482534 | None:intergenic |
CGGTATCGGTAAGGCAAATT+TGG | 0.235298 | 3.1:+48480434 | MS.gene05724:CDS |
ACCAAGTGCCAATATCTTTC+TGG | 0.242341 | 3.1:+48481899 | MS.gene05724:CDS |
GAGAATATTCTGAATGATAA+TGG | 0.245574 | 3.1:+48480055 | MS.gene05724:CDS |
TAATAGTAAAAGTGGATTAT+TGG | 0.263495 | 3.1:+48482889 | MS.gene05724:CDS |
CCTGAGTAATCCGCATTTCC+TGG | 0.269201 | 3.1:-48480333 | None:intergenic |
CATCAGAAGCTCACGCAATT+AGG | 0.270532 | 3.1:+48485709 | MS.gene05724:intron |
AATTGTGATCTTTCAAAGTT+TGG | 0.278158 | 3.1:-48485808 | None:intergenic |
GGGTTTCTATTCCGTACTTC+TGG | 0.279523 | 3.1:+48485015 | MS.gene05724:CDS |
AGTGAGTGTTTCAAGTGTTT+TGG | 0.279598 | 3.1:+48480099 | MS.gene05724:CDS |
TGAATGGTCAAGGTATTTAA+AGG | 0.280119 | 3.1:-48481468 | None:intergenic |
CATCGCTTCGGCGCTTTGGC+AGG | 0.290256 | 3.1:-48481605 | None:intergenic |
CCGAAAATGGTCTTGATATA+AGG | 0.291887 | 3.1:+48481064 | MS.gene05724:CDS |
ATTTGTTCCGTTTGCCGCTT+TGG | 0.297414 | 3.1:+48482032 | MS.gene05724:CDS |
GATACATGGACCGGCGCTTT+TGG | 0.305649 | 3.1:+48485772 | MS.gene05724:CDS |
GTAATGTCGATATTCTTTCT+AGG | 0.309285 | 3.1:+48479617 | MS.gene05724:CDS |
GCAAGAAGAGGATTCCTTTA+GGG | 0.310158 | 3.1:-48482969 | None:intergenic |
AACTCTTCTCCGTCCGAAAA+TGG | 0.313482 | 3.1:+48481051 | MS.gene05724:CDS |
TTCATTTCATCACCCAAATC+AGG | 0.315241 | 3.1:-48480301 | None:intergenic |
CCTGCAATCGGGCATATAAA+AGG | 0.318750 | 3.1:+48481256 | MS.gene05724:CDS |
GATCTTGCATTATTTGTATC+TGG | 0.322209 | 3.1:-48481947 | None:intergenic |
CCAGTAAACGTGGGAGGATT+AGG | 0.325073 | 3.1:+48480140 | MS.gene05724:CDS |
TTCTGACTCCAAGGCAACTA+TGG | 0.328818 | 3.1:+48480864 | MS.gene05724:CDS |
GAGAAGTGTGATCTTAAGTA+TGG | 0.340078 | 3.1:+48480187 | MS.gene05724:CDS |
TGCAAGAAGAGGATTCCTTT+AGG | 0.345444 | 3.1:-48482970 | None:intergenic |
GCTTGGTAAACTTCAGAAAC+TGG | 0.348392 | 3.1:-48486063 | None:intergenic |
TTGTCCGCACCCACTGAAAC+TGG | 0.359349 | 3.1:-48482815 | None:intergenic |
CACCTTCCCACCAAGCTTCC+TGG | 0.361570 | 3.1:-48480231 | None:intergenic |
TTTCTCGGCCTTGAAACTTC+CGG | 0.373286 | 3.1:+48480585 | MS.gene05724:CDS |
CATGTTGTTACCAAGGTCTA+AGG | 0.373440 | 3.1:+48481737 | MS.gene05724:CDS |
AAATATTCCCTCTCCAAATT+CGG | 0.374447 | 3.1:+48485888 | MS.gene05724:CDS |
GAAGCGATGAATCAACTCTA+AGG | 0.378506 | 3.1:+48481619 | MS.gene05724:CDS |
TGGTCAGTGTAGCAACTATT+AGG | 0.379578 | 3.1:+48485053 | MS.gene05724:CDS |
GATGGACTAAGAGGCACATT+TGG | 0.383730 | 3.1:-48481111 | None:intergenic |
TGGAAACATCTTGCATATCT+TGG | 0.388953 | 3.1:+48480907 | MS.gene05724:CDS |
TGTTGTTGGTCCACAGGAAT+TGG | 0.390924 | 3.1:-48487253 | None:intergenic |
AATGCAAGATCACAAGTCTA+AGG | 0.396731 | 3.1:+48481959 | MS.gene05724:CDS |
GATTAGGCCAGTGCCTCCTT+TGG | 0.397024 | 3.1:+48480156 | MS.gene05724:CDS |
GAACTTGATAATAGTAAAAG+TGG | 0.398807 | 3.1:+48482881 | MS.gene05724:CDS |
ACCATCGGCCAGAAAGATAT+TGG | 0.399541 | 3.1:-48481907 | None:intergenic |
AAACTTCCGGAGATGGAATC+AGG | 0.401835 | 3.1:+48480598 | MS.gene05724:CDS |
TCGCATATTAATGGATGAAT+TGG | 0.403985 | 3.1:+48485271 | MS.gene05724:CDS |
TGGAATGTGTCGCATATTAA+TGG | 0.405995 | 3.1:+48485262 | MS.gene05724:CDS |
ATTACTAGCACTACTGCTTC+CGG | 0.409786 | 3.1:-48486034 | None:intergenic |
GGCACCGTACTGTGCTTTCT+GGG | 0.413489 | 3.1:+48481781 | MS.gene05724:CDS |
TTTGTCCATCGTGTCGATGC+GGG | 0.414181 | 3.1:+48482248 | MS.gene05724:CDS |
GTAGCCAAAGCAAATTCAAC+GGG | 0.414503 | 3.1:+48482275 | MS.gene05724:CDS |
TGTTGTTCCTCCAGCTGAAA+AGG | 0.415498 | 3.1:+48480663 | MS.gene05724:CDS |
ACTTAATCGAATGAATTTCC+AGG | 0.417064 | 3.1:+48484994 | MS.gene05724:CDS |
TTTCATTCTGGCAATGTTGT+TGG | 0.419236 | 3.1:-48487267 | None:intergenic |
ACAGCCCTTCAAAGTCTGTT+AGG | 0.423835 | 3.1:+48482788 | MS.gene05724:CDS |
TGATGGTACCCGGAAAATCT+AGG | 0.425301 | 3.1:-48485846 | None:intergenic |
TCATAAGACGTGTCTTGGTC+TGG | 0.426619 | 3.1:+48482094 | MS.gene05724:CDS |
ATTATTGCAATGGATTCCAT+TGG | 0.427186 | 3.1:-48480980 | None:intergenic |
CTTCTTCTATTATTTGGAGG+TGG | 0.430595 | 3.1:-48481336 | None:intergenic |
AACCTTTAAATGTTCTGTCT+TGG | 0.434230 | 3.1:+48481700 | MS.gene05724:CDS |
TTCCATCTCCGGAAGTTTCA+AGG | 0.435157 | 3.1:-48480593 | None:intergenic |
CCGGCTTTCCACATAACTTC+CGG | 0.435342 | 3.1:-48482543 | None:intergenic |
TCCTTCGAATTTCATGCTAC+TGG | 0.436416 | 3.1:+48481861 | MS.gene05724:CDS |
CCTCTTCTTCTATTATTTGG+AGG | 0.441510 | 3.1:-48481339 | None:intergenic |
TCTTAGGGTCCTTGGAGATA+AGG | 0.443751 | 3.1:+48485193 | MS.gene05724:intron |
GGCAACTATGGCATCTTTGA+AGG | 0.445667 | 3.1:+48480876 | MS.gene05724:CDS |
AGTAGAGATACCAGTAAATC+CGG | 0.447861 | 3.1:+48482524 | MS.gene05724:CDS |
CTCTTCTTGCAGAGATCTGA+TGG | 0.450854 | 3.1:+48482982 | MS.gene05724:CDS |
CAAATTTGCCTTACCGATAC+CGG | 0.451165 | 3.1:-48480433 | None:intergenic |
TTTGTGGAGACACTTGATAA+TGG | 0.452655 | 3.1:+48480522 | MS.gene05724:CDS |
GTTCACACTGAATGCATGTA+AGG | 0.456612 | 3.1:-48482318 | None:intergenic |
TGAATGAGAAGAAGGATTTG+TGG | 0.456943 | 3.1:+48480506 | MS.gene05724:CDS |
TCTTCTTGAGTGCATGTTTG+TGG | 0.458079 | 3.1:-48481233 | None:intergenic |
GGACAAAACCATTCACCATC+AGG | 0.458765 | 3.1:-48482232 | None:intergenic |
GGGATGAAGTTACGGAGAGA+TGG | 0.459836 | 3.1:+48480359 | MS.gene05724:CDS |
GATGGGAGCGACGAGGGAAA+TGG | 0.459932 | 3.1:+48480377 | MS.gene05724:CDS |
TCATGAGGAAAATGTTGATC+AGG | 0.461489 | 3.1:+48481488 | MS.gene05724:CDS |
GATTGAGGAGTTGTATCTTC+CGG | 0.462600 | 3.1:+48480414 | MS.gene05724:CDS |
CACTCAAGAAGACCTGCAAT+CGG | 0.463785 | 3.1:+48481244 | MS.gene05724:CDS |
CGAATAAATCAAGTGCAAAT+CGG | 0.466377 | 3.1:+48481550 | MS.gene05724:CDS |
TTAGAGTTGATTCATCGCTT+CGG | 0.468082 | 3.1:-48481617 | None:intergenic |
GATTCATCGCTTCGGCGCTT+TGG | 0.468963 | 3.1:-48481609 | None:intergenic |
CAAAGATGCCATAGTTGCCT+TGG | 0.470190 | 3.1:-48480872 | None:intergenic |
AGGTGAATTATTATCTGAAA+AGG | 0.470293 | 3.1:+48480618 | MS.gene05724:CDS |
GGCCTTGAAACTTCCGGAGA+TGG | 0.471082 | 3.1:+48480591 | MS.gene05724:CDS |
AGGCAAGAGGAAGACGCCTT+TGG | 0.471117 | 3.1:-48481666 | None:intergenic |
GAAGGCGATAATGATAATCT+TGG | 0.474333 | 3.1:+48486933 | MS.gene05724:CDS |
TCAGGATTGGGATGAAGTTA+CGG | 0.474444 | 3.1:+48480351 | MS.gene05724:CDS |
AGAATATTCTGAATGATAAT+GGG | 0.475569 | 3.1:+48480056 | MS.gene05724:CDS |
ATCGTTGGATCAACAAATGA+TGG | 0.477086 | 3.1:+48486107 | MS.gene05724:CDS |
TGGCAATGTTGTTGGTCCAC+AGG | 0.477715 | 3.1:-48487259 | None:intergenic |
TCTGGAGAGAAATGAAGATC+TGG | 0.483681 | 3.1:+48485033 | MS.gene05724:CDS |
GATAGACAAAAGAGAATCGT+TGG | 0.484937 | 3.1:+48486092 | MS.gene05724:CDS |
CAAAATGAAGTTTCATGCAA+CGG | 0.485051 | 3.1:+48480700 | MS.gene05724:CDS |
AAAAGTGCTCTCTTGTAAAG+TGG | 0.486293 | 3.1:+48487320 | MS.gene05724:CDS |
ACATATTGCTTAACAGCATC+GGG | 0.489875 | 3.1:-48480835 | None:intergenic |
AATTCACCTGATTCCATCTC+CGG | 0.489949 | 3.1:-48480604 | None:intergenic |
ATGACGACGATACTGAAATC+TGG | 0.490750 | 3.1:-48485240 | None:intergenic |
AATGCGGATTACTCAGGATT+GGG | 0.491002 | 3.1:+48480339 | MS.gene05724:CDS |
ATTTAAAGTCAAATTGTTCG+TGG | 0.491332 | 3.1:+48480779 | MS.gene05724:CDS |
AACTCAACCAAAGGAGGCAC+TGG | 0.491829 | 3.1:-48480163 | None:intergenic |
ATTCTGAATGATAATGGGTT+GGG | 0.491960 | 3.1:+48480061 | MS.gene05724:CDS |
TTATTGCAATGGATTCCATT+GGG | 0.492268 | 3.1:-48480979 | None:intergenic |
AGTAAACTTTATTATTGCAA+TGG | 0.492400 | 3.1:-48480990 | None:intergenic |
AACATCTTGCATATCTTGGA+TGG | 0.495598 | 3.1:+48480911 | MS.gene05724:CDS |
CAGTAAATCCGGAAGTTATG+TGG | 0.497239 | 3.1:+48482535 | MS.gene05724:CDS |
TTCGCCTCCAAAGCGGCAAA+CGG | 0.498884 | 3.1:-48482039 | None:intergenic |
TTCATTTCTCTCCAGAAGTA+CGG | 0.498951 | 3.1:-48485026 | None:intergenic |
TGAAATGAAGGTCGGAATCC+AGG | 0.500755 | 3.1:+48480315 | MS.gene05724:CDS |
GGAGTTGTATCTTCCGGTAT+CGG | 0.502507 | 3.1:+48480420 | MS.gene05724:CDS |
TATTCTGAATGATAATGGGT+TGG | 0.503416 | 3.1:+48480060 | MS.gene05724:CDS |
CCTCCAAATAATAGAAGAAG+AGG | 0.505734 | 3.1:+48481339 | MS.gene05724:CDS |
GAGAAGAATTTCTGTTTCAG+TGG | 0.506628 | 3.1:-48481378 | None:intergenic |
GTAGCTGAAGTACCTCTTGT+TGG | 0.510042 | 3.1:+48485215 | MS.gene05724:CDS |
TTAAAGGTTTATGATGTGAA+AGG | 0.510336 | 3.1:-48481686 | None:intergenic |
AAATGCGGATTACTCAGGAT+TGG | 0.511598 | 3.1:+48480338 | MS.gene05724:CDS |
GATATTGGCACTTGGTCTGA+TGG | 0.512828 | 3.1:-48481892 | None:intergenic |
GCTGTCCTAACAGACTTTGA+AGG | 0.513374 | 3.1:-48482793 | None:intergenic |
GCCAATATCTTTCTGGCCGA+TGG | 0.514917 | 3.1:+48481906 | MS.gene05724:CDS |
CATCAGATCTCTGCAAGAAG+AGG | 0.515594 | 3.1:-48482981 | None:intergenic |
CACATATTGCTTAACAGCAT+CGG | 0.516322 | 3.1:-48480836 | None:intergenic |
CGAAAACAAGATGCTATCTC+CGG | 0.516683 | 3.1:+48486015 | MS.gene05724:CDS |
GTTAGGACAGCCAGTTTCAG+TGG | 0.517338 | 3.1:+48482805 | MS.gene05724:CDS |
GGAGGTAGTTGGTGACTACT+TGG | 0.518838 | 3.1:+48480543 | MS.gene05724:CDS |
ATGGACATTGAATGAGAAGA+AGG | 0.520484 | 3.1:+48480498 | MS.gene05724:CDS |
GGTACTGAGATCAAATGAAA+GGG | 0.522206 | 3.1:+48481641 | MS.gene05724:CDS |
TACCAGGAAGCTTGGTGGGA+AGG | 0.523101 | 3.1:+48480229 | MS.gene05724:CDS |
TGTTCCGTTTGCCGCTTTGG+AGG | 0.523366 | 3.1:+48482035 | MS.gene05724:CDS |
AGGATCTCCCTGATGGTGAA+TGG | 0.525582 | 3.1:+48482224 | MS.gene05724:intron |
GGACGGAGAAGAGTTCATCA+TGG | 0.529822 | 3.1:-48481043 | None:intergenic |
TGAATGTTTCGAGCCCCTAA+AGG | 0.530764 | 3.1:+48482955 | MS.gene05724:CDS |
ATGTAAATTACCAGGAAGCT+TGG | 0.532737 | 3.1:+48480221 | MS.gene05724:CDS |
CTTAATCGAATGAATTTCCA+GGG | 0.533875 | 3.1:+48484995 | MS.gene05724:CDS |
GGGTACTGAGATCAAATGAA+AGG | 0.534729 | 3.1:+48481640 | MS.gene05724:CDS |
TTTAAAGTCAAATTGTTCGT+GGG | 0.535401 | 3.1:+48480780 | MS.gene05724:CDS |
GGATGAAGTTACGGAGAGAT+GGG | 0.535957 | 3.1:+48480360 | MS.gene05724:CDS |
CTAGACGAAGGAAGGCGAAA+GGG | 0.537831 | 3.1:+48487359 | MS.gene05724:CDS |
ATCATCTGAAAGCAGAAGGA+TGG | 0.539714 | 3.1:+48481301 | MS.gene05724:CDS |
CTACTTGGCTGTTACAGTAA+AGG | 0.541628 | 3.1:+48480558 | MS.gene05724:CDS |
CCAGGAAATGCGGATTACTC+AGG | 0.542770 | 3.1:+48480333 | MS.gene05724:CDS |
GAATGATAAGTGTGATGGAA+TGG | 0.545053 | 3.1:+48480258 | MS.gene05724:CDS |
TCTTGTAAAGTGGAGTGGAC+TGG | 0.545279 | 3.1:+48487330 | MS.gene05724:CDS |
ATCAAATGAAAGGGTGCCAA+AGG | 0.545984 | 3.1:+48481650 | MS.gene05724:CDS |
CCGGAAGTTATGTGGAAAGC+CGG | 0.546646 | 3.1:+48482543 | MS.gene05724:CDS |
CCAAACCCTATCAATGGAGG+AGG | 0.547670 | 3.1:+48479538 | None:intergenic |
TCTACCACAGTGGGAACAGC+AGG | 0.548324 | 3.1:-48485751 | None:intergenic |
TTCCCACTGTGGTAGATACA+TGG | 0.549468 | 3.1:+48485758 | MS.gene05724:CDS |
AATTTGCCGTGATTGGTGAA+TGG | 0.552298 | 3.1:+48480479 | MS.gene05724:CDS |
CATGTATAGGATCTCCCTGA+TGG | 0.557404 | 3.1:+48482217 | MS.gene05724:intron |
TGCTCTCTTGTAAAGTGGAG+TGG | 0.557520 | 3.1:+48487325 | MS.gene05724:CDS |
AAATTACCAGGAAGCTTGGT+GGG | 0.557807 | 3.1:+48480225 | MS.gene05724:CDS |
CAATGTCCATTCACCAATCA+CGG | 0.558049 | 3.1:-48480485 | None:intergenic |
AGATTTCAGTATCGTCGTCA+TGG | 0.558925 | 3.1:+48485242 | MS.gene05724:CDS |
TTCTGGCACATGATGGTACC+CGG | 0.559347 | 3.1:-48485856 | None:intergenic |
TCATTTCATCACCCAAATCA+GGG | 0.559352 | 3.1:-48480300 | None:intergenic |
TCATATCATAAGACGTGTCT+TGG | 0.562434 | 3.1:+48482089 | MS.gene05724:CDS |
ATCGGAAGCGAAAACGCTTG+AGG | 0.563012 | 3.1:+48481568 | MS.gene05724:CDS |
GAAGTTTCATGCAACGGTGC+TGG | 0.563913 | 3.1:+48480706 | MS.gene05724:CDS |
ACTCAAGAAGACCTGCAATC+GGG | 0.566161 | 3.1:+48481245 | MS.gene05724:CDS |
CAAGAAGAGGATTCCTTTAG+GGG | 0.566868 | 3.1:-48482968 | None:intergenic |
CGGAGAGATGGGAGCGACGA+GGG | 0.568858 | 3.1:+48480371 | MS.gene05724:CDS |
CGAAATCATCTGAAAGCAGA+AGG | 0.569282 | 3.1:+48481297 | MS.gene05724:CDS |
CTGCGGAAAAGACTGTGAAA+AGG | 0.570141 | 3.1:+48482568 | MS.gene05724:CDS |
CTGTCCTAACAGACTTTGAA+GGG | 0.570641 | 3.1:-48482792 | None:intergenic |
TGGTATTCCACAATGGCTTG+AGG | 0.570911 | 3.1:-48481213 | None:intergenic |
TCATCTGCCACTGCAACAGA+TGG | 0.573346 | 3.1:-48481177 | None:intergenic |
TGTATCTTCCGGTATCGGTA+AGG | 0.573927 | 3.1:+48480425 | MS.gene05724:CDS |
TTAGGACAGCCAGTTTCAGT+GGG | 0.574149 | 3.1:+48482806 | MS.gene05724:CDS |
ACATCTTGCATATCTTGGAT+GGG | 0.574776 | 3.1:+48480912 | MS.gene05724:CDS |
GGAACATGACAGTCACCGGC+AGG | 0.574813 | 3.1:-48481090 | None:intergenic |
ATTAATGGATGAATTGGAGA+AGG | 0.579634 | 3.1:+48485277 | MS.gene05724:CDS |
CACTTCTCAAACTCAACCAA+AGG | 0.582178 | 3.1:-48480172 | None:intergenic |
TTCTCAAACTCAACCAAAGG+AGG | 0.587475 | 3.1:-48480169 | None:intergenic |
GCCAGTAGCATGAAATTCGA+AGG | 0.587705 | 3.1:-48481862 | None:intergenic |
AAATACCTTGACCATTCATG+AGG | 0.588685 | 3.1:+48481473 | MS.gene05724:CDS |
GGCAAAACCGAATTTGGAGA+GGG | 0.589581 | 3.1:-48485895 | None:intergenic |
ACGTCTTATGATATGAAGAC+GGG | 0.594381 | 3.1:-48482082 | None:intergenic |
ACAGCCAGTTTCAGTGGGTG+CGG | 0.594757 | 3.1:+48482811 | MS.gene05724:CDS |
ATTTGGAACATGACAGTCAC+CGG | 0.595709 | 3.1:-48481094 | None:intergenic |
TAAATTACCAGGAAGCTTGG+TGG | 0.595722 | 3.1:+48480224 | MS.gene05724:CDS |
GCCAGAAAGATATTGGCACT+TGG | 0.596693 | 3.1:-48481900 | None:intergenic |
TACAGGTACAAGCCACCCAA+TGG | 0.597089 | 3.1:+48480964 | MS.gene05724:CDS |
TCTGGGCGAATAACTCATGA+AGG | 0.597089 | 3.1:+48481798 | MS.gene05724:CDS |
TGTAGCCAAAGCAAATTCAA+CGG | 0.597213 | 3.1:+48482274 | MS.gene05724:CDS |
CTTTGAAAATCCAAAAGCGC+CGG | 0.597314 | 3.1:-48485782 | None:intergenic |
TGTGCTTGCTTCTGACTCCA+AGG | 0.601206 | 3.1:+48480855 | MS.gene05724:CDS |
GAAAATCAATGAAAGAGTTG+AGG | 0.603862 | 3.1:+48479595 | MS.gene05724:CDS |
GATGGAAGCCTCACAACTAG+AGG | 0.605377 | 3.1:-48481159 | None:intergenic |
CACGTCTTATGATATGAAGA+CGG | 0.605602 | 3.1:-48482083 | None:intergenic |
TGATAAGTGTGATGGAATGG+AGG | 0.608979 | 3.1:+48480261 | MS.gene05724:CDS |
CACTTGATAATGGAGGTAGT+TGG | 0.609618 | 3.1:+48480532 | MS.gene05724:CDS |
ATGGGAAATTGACATTGACC+TGG | 0.610133 | 3.1:+48480930 | MS.gene05724:CDS |
GGTGTACTCTAGACGAAGGA+AGG | 0.610377 | 3.1:+48487351 | MS.gene05724:CDS |
GTGTGTTGATGTAAATTACC+AGG | 0.611042 | 3.1:+48480213 | MS.gene05724:CDS |
GTTGTGAATGATAAGTGTGA+TGG | 0.611286 | 3.1:+48480253 | MS.gene05724:CDS |
TGATTTGGGTGATGAAATGA+AGG | 0.612944 | 3.1:+48480303 | MS.gene05724:CDS |
TTGCAATGGATTCCATTGGG+TGG | 0.613137 | 3.1:-48480976 | None:intergenic |
TTGGGTGATGAAATGAAGGT+CGG | 0.615563 | 3.1:+48480307 | MS.gene05724:CDS |
TAAGACGTGTCTTGGTCTGG+AGG | 0.616442 | 3.1:+48482097 | MS.gene05724:CDS |
TATGTGGAAAGCCGGTTCTG+CGG | 0.616945 | 3.1:+48482551 | MS.gene05724:CDS |
AGTGTGATGGAATGGAGGAG+AGG | 0.617309 | 3.1:+48480266 | MS.gene05724:CDS |
TAGACGAAGGAAGGCGAAAG+GGG | 0.617367 | 3.1:+48487360 | MS.gene05724:CDS |
GAAAGGGGAACATGAAGCGT+AGG | 0.617607 | 3.1:+48487375 | MS.gene05724:CDS |
AAGCGATGAATCAACTCTAA+GGG | 0.620220 | 3.1:+48481620 | MS.gene05724:CDS |
TTTATGATGTGAAAGGCAAG+AGG | 0.620240 | 3.1:-48481679 | None:intergenic |
CTTGATATAAGGCATCCTGC+CGG | 0.620590 | 3.1:+48481075 | MS.gene05724:CDS |
TTCGCCCAGAAAGCACAGTA+CGG | 0.622172 | 3.1:-48481785 | None:intergenic |
AGATAAGAGCGATCTACCAT+CGG | 0.623826 | 3.1:-48481922 | None:intergenic |
ATGTTTGTGGTATTCCACAA+TGG | 0.624693 | 3.1:-48481220 | None:intergenic |
TCTAGACGAAGGAAGGCGAA+AGG | 0.625198 | 3.1:+48487358 | MS.gene05724:CDS |
GAGGCTTCCATCTGTTGCAG+TGG | 0.625585 | 3.1:+48481170 | MS.gene05724:CDS |
GGCGGAGCAACCAATTCCTG+TGG | 0.627539 | 3.1:+48487243 | MS.gene05724:intron |
TGAAATCTGGTACCAACAAG+AGG | 0.629514 | 3.1:-48485227 | None:intergenic |
TGGCAAAACCGAATTTGGAG+AGG | 0.630456 | 3.1:-48485896 | None:intergenic |
CCACACAGTCATTTGCGTCA+AGG | 0.632292 | 3.1:+48481996 | MS.gene05724:CDS |
ACTGTGGTAGATACATGGAC+CGG | 0.633569 | 3.1:+48485763 | MS.gene05724:CDS |
ATGCAACGGTGCTGGTGAAG+CGG | 0.634047 | 3.1:+48480714 | MS.gene05724:CDS |
AAACGCTTGAGGAATTCAGA+TGG | 0.640084 | 3.1:+48481579 | MS.gene05724:CDS |
GAAGTACGGAATAGAAACCC+TGG | 0.641639 | 3.1:-48485012 | None:intergenic |
CTTCAGCTACCTTATCTCCA+AGG | 0.642106 | 3.1:-48485202 | None:intergenic |
AAGTTCACAACTCTCAGAGT+CGG | 0.642483 | 3.1:-48482864 | None:intergenic |
TTATTGTCCTCAAGCCATTG+TGG | 0.643240 | 3.1:+48481206 | MS.gene05724:CDS |
GTGGAGACACTTGATAATGG+AGG | 0.645022 | 3.1:+48480525 | MS.gene05724:CDS |
GAAGCTCACGCAATTAGGAG+TGG | 0.645058 | 3.1:+48485714 | MS.gene05724:intron |
ATCGGGTTATCCAGTAAACG+TGG | 0.645292 | 3.1:+48480130 | MS.gene05724:CDS |
GCAAGATCACAAGTCTAAGG+AGG | 0.646340 | 3.1:+48481962 | MS.gene05724:CDS |
GTCCATGTATCTACCACAGT+GGG | 0.654636 | 3.1:-48485760 | None:intergenic |
GAGTATCTCCTCTAGTTGTG+AGG | 0.656154 | 3.1:+48481151 | MS.gene05724:CDS |
CAAATCCCGCATCGACACGA+TGG | 0.658482 | 3.1:-48482253 | None:intergenic |
ACAGCAACATGTTGTTACCA+AGG | 0.659467 | 3.1:+48481730 | MS.gene05724:CDS |
GACAAAACCATTCACCATCA+GGG | 0.668378 | 3.1:-48482231 | None:intergenic |
ACGGAGAGATGGGAGCGACG+AGG | 0.671386 | 3.1:+48480370 | MS.gene05724:CDS |
TCACAACTAGAGGAGATACT+CGG | 0.675835 | 3.1:-48481149 | None:intergenic |
TTTACCTGCTGTTCCCACTG+TGG | 0.676231 | 3.1:+48485747 | MS.gene05724:CDS |
TGGGTGCGGACAATCTAACA+TGG | 0.678752 | 3.1:+48482825 | MS.gene05724:CDS |
AGGTCGGAATCCAGGAAATG+CGG | 0.680557 | 3.1:+48480323 | MS.gene05724:CDS |
AAAGAAGTTCGCCTCCAAAG+CGG | 0.687855 | 3.1:-48482046 | None:intergenic |
CCTTGACGCAAATGACTGTG+TGG | 0.688106 | 3.1:-48481996 | None:intergenic |
CAAACCCTATCAATGGAGGA+GGG | 0.690346 | 3.1:+48479539 | None:intergenic |
GGTTATCCAGTAAACGTGGG+AGG | 0.693475 | 3.1:+48480134 | MS.gene05724:CDS |
TGTTATCGACTGTGTCACCA+TGG | 0.695665 | 3.1:+48486962 | MS.gene05724:CDS |
GACTGGTGTACTCTAGACGA+AGG | 0.706505 | 3.1:+48487347 | MS.gene05724:CDS |
TCGGGTTATCCAGTAAACGT+GGG | 0.713274 | 3.1:+48480131 | MS.gene05724:CDS |
TGGGAAATTGACATTGACCT+GGG | 0.718631 | 3.1:+48480931 | MS.gene05724:CDS |
AGCCAAAGCAAATTCAACGG+GGG | 0.735187 | 3.1:+48482277 | MS.gene05724:CDS |
TAGCCAAAGCAAATTCAACG+GGG | 0.739394 | 3.1:+48482276 | MS.gene05724:CDS |
GGTCCATGTATCTACCACAG+TGG | 0.749610 | 3.1:-48485761 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 48479551 | 48487396 | 48479551 | ID=MS.gene05724 |
chr3.1 | mRNA | 48479551 | 48487396 | 48479551 | ID=MS.gene05724.t1;Parent=MS.gene05724 |
chr3.1 | exon | 48479551 | 48479638 | 48479551 | ID=MS.gene05724.t1.exon1;Parent=MS.gene05724.t1 |
chr3.1 | CDS | 48479551 | 48479638 | 48479551 | ID=cds.MS.gene05724.t1;Parent=MS.gene05724.t1 |
chr3.1 | exon | 48480011 | 48482118 | 48480011 | ID=MS.gene05724.t1.exon2;Parent=MS.gene05724.t1 |
chr3.1 | CDS | 48480011 | 48482118 | 48480011 | ID=cds.MS.gene05724.t1;Parent=MS.gene05724.t1 |
chr3.1 | exon | 48482226 | 48482346 | 48482226 | ID=MS.gene05724.t1.exon3;Parent=MS.gene05724.t1 |
chr3.1 | CDS | 48482226 | 48482346 | 48482226 | ID=cds.MS.gene05724.t1;Parent=MS.gene05724.t1 |
chr3.1 | exon | 48482504 | 48482589 | 48482504 | ID=MS.gene05724.t1.exon4;Parent=MS.gene05724.t1 |
chr3.1 | CDS | 48482504 | 48482589 | 48482504 | ID=cds.MS.gene05724.t1;Parent=MS.gene05724.t1 |
chr3.1 | exon | 48482782 | 48483026 | 48482782 | ID=MS.gene05724.t1.exon5;Parent=MS.gene05724.t1 |
chr3.1 | CDS | 48482782 | 48483026 | 48482782 | ID=cds.MS.gene05724.t1;Parent=MS.gene05724.t1 |
chr3.1 | exon | 48484988 | 48485074 | 48484988 | ID=MS.gene05724.t1.exon6;Parent=MS.gene05724.t1 |
chr3.1 | CDS | 48484988 | 48485074 | 48484988 | ID=cds.MS.gene05724.t1;Parent=MS.gene05724.t1 |
chr3.1 | exon | 48485199 | 48485298 | 48485199 | ID=MS.gene05724.t1.exon7;Parent=MS.gene05724.t1 |
chr3.1 | CDS | 48485199 | 48485298 | 48485199 | ID=cds.MS.gene05724.t1;Parent=MS.gene05724.t1 |
chr3.1 | exon | 48485715 | 48485922 | 48485715 | ID=MS.gene05724.t1.exon8;Parent=MS.gene05724.t1 |
chr3.1 | CDS | 48485715 | 48485922 | 48485715 | ID=cds.MS.gene05724.t1;Parent=MS.gene05724.t1 |
chr3.1 | exon | 48486007 | 48486130 | 48486007 | ID=MS.gene05724.t1.exon9;Parent=MS.gene05724.t1 |
chr3.1 | CDS | 48486007 | 48486130 | 48486007 | ID=cds.MS.gene05724.t1;Parent=MS.gene05724.t1 |
chr3.1 | exon | 48486926 | 48486983 | 48486926 | ID=MS.gene05724.t1.exon10;Parent=MS.gene05724.t1 |
chr3.1 | CDS | 48486926 | 48486983 | 48486926 | ID=cds.MS.gene05724.t1;Parent=MS.gene05724.t1 |
chr3.1 | exon | 48487244 | 48487396 | 48487244 | ID=MS.gene05724.t1.exon11;Parent=MS.gene05724.t1 |
chr3.1 | CDS | 48487244 | 48487396 | 48487244 | ID=cds.MS.gene05724.t1;Parent=MS.gene05724.t1 |
Gene Sequence |
Protein sequence |