AlfalfaGEDB | MS.gene057415

M. sativa cultivar XinJiangDaYe / MS.gene057415

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF08263.15 PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057415.t1	AES65591.1	95.3	598	27	1	36	633	34	630	1.70E-283	984.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057415.t1	Q9M1L7	50.7	612	280	7	36	633	30	633	3.5e-128	460.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057415.t1	G7IIP0	95.3	598	27	1	36	633	34	630	1.2e-283	984.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene000664	MS.gene057415	PPI
MS.gene052922	MS.gene057415	PPI
MS.gene057415	MS.gene49992	PPI
MS.gene057415	MS.gene013713	PPI
MS.gene057415	MS.gene93821	PPI
MS.gene057415	MS.gene02626	PPI
MS.gene057415	MS.gene056484	PPI
MS.gene057415	MS.gene061087	PPI
MS.gene057415	MS.gene026381	PPI
MS.gene057415	MS.gene91381	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057415.t1	MTR_2g042710	95.893	633	23	2	1	633	1	630	0.0	1241
MS.gene057415.t1	MTR_4g124990	66.719	643	185	9	3	633	2	627	0.0	843
MS.gene057415.t1	MTR_8g021350	49.923	649	271	10	30	632	31	671	0.0	635
MS.gene057415.t1	MTR_8g101260	38.547	633	358	8	6	632	10	617	9.94e-148	441
MS.gene057415.t1	MTR_8g087420	39.394	627	353	10	9	632	10	612	1.27e-147	442
MS.gene057415.t1	MTR_2g105900	39.222	617	357	10	30	632	6	618	5.55e-145	435
MS.gene057415.t1	MTR_1g009270	39.185	638	341	12	8	632	12	615	1.43e-144	435
MS.gene057415.t1	MTR_6g093050	38.374	615	347	11	30	632	23	617	5.60e-142	427
MS.gene057415.t1	MTR_3g093710	33.029	657	373	20	1	632	1	615	4.44e-103	327
MS.gene057415.t1	MTR_4g113100	34.472	615	370	14	28	632	27	618	1.08e-99	318

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057415.t1	AT3G42880	49.530	638	300	8	10	633	4	633	0.0	620
MS.gene057415.t1	AT5G20690	47.649	638	291	10	30	632	29	658	0.0	607
MS.gene057415.t1	AT5G35390	39.874	637	367	9	1	632	4	629	7.93e-157	466
MS.gene057415.t1	AT1G72460	42.056	642	333	14	9	628	6	630	3.94e-149	446
MS.gene057415.t1	AT3G20190	38.889	648	353	11	7	632	21	647	2.70e-147	442
MS.gene057415.t1	AT4G31250	39.051	653	346	12	7	631	12	640	3.54e-141	426
MS.gene057415.t1	AT2G07040	38.126	619	337	10	30	631	23	612	2.12e-137	416
MS.gene057415.t1	AT1G50610	39.482	618	321	11	17	607	33	624	4.17e-137	416
MS.gene057415.t1	AT3G02880	36.275	612	356	16	30	631	28	615	7.14e-110	344
MS.gene057415.t1	AT5G16590	36.379	591	342	13	52	631	46	613	7.11e-108	338

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Find 165 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAATGGAGAGAGAGAGG+AGG	0.550539	2.1:+51146586	None:intergenic
AAAGCAGCTGCTGAGGTATT+GGG	0.325609	2.1:-51145384	MS.gene057415:CDS
AAAGCATAGTCACTTAAAAG+AGG	0.539189	2.1:+51144461	None:intergenic
AAAGCCGATGTTTATTGTCT+CGG	0.510778	2.1:-51144350	MS.gene057415:CDS
AACAACGCCGACCCACGTAC+CGG	0.546784	2.1:+51146446	None:intergenic
AACCGCTTAAAGATTGCTAA+AGG	0.551469	2.1:-51144587	MS.gene057415:CDS
AACTGGGCGAAGAAATCTCC+AGG	0.532898	2.1:+51146219	None:intergenic
AAGAGTTGGGAGAAGGAATG+TGG	0.426343	2.1:-51145514	MS.gene057415:CDS
AAGCAGCTGCTGAGGTATTG+GGG	0.599251	2.1:-51145383	MS.gene057415:CDS
AAGTCTCGTGAGATTCGGGC+CGG	0.595056	2.1:-51146004	MS.gene057415:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGCATAGTCACTTAAAAG+AGG	+	chr2.1:51146242-51146261	None:intergenic	30.0%
ACATATAACAAGCTTCCTTT+AGG	+	chr2.1:51145550-51145569	None:intergenic	30.0%
AGGTTGAAAATTCAGTGTAA+AGG	+	chr2.1:51146160-51146179	None:intergenic	30.0%
ATCATTCTTGAACTCATTAC+AGG	-	chr2.1:51146377-51146396	MS.gene057415:CDS	30.0%
ATGAGGGAGATGAATAAAAT+TGG	-	chr2.1:51145406-51145425	MS.gene057415:CDS	30.0%
GATACCGAGTTATAAAACTT+AGG	+	chr2.1:51145859-51145878	None:intergenic	30.0%
TGAGGGAGATGAATAAAATT+GGG	-	chr2.1:51145407-51145426	MS.gene057415:CDS	30.0%
TTAAATTATGGTCACAGTTG+CGG	+	chr2.1:51145780-51145799	None:intergenic	30.0%
TTATCAACATATGGAAATGC+TGG	+	chr2.1:51146025-51146044	None:intergenic	30.0%
TTCCTTTAGCAATCTTTAAG+CGG	+	chr2.1:51146118-51146137	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	51144076	51146646	51144076	ID=MS.gene057415
chr2.1	mRNA	51144076	51146646	51144076	ID=MS.gene057415.t1;Parent=MS.gene057415
chr2.1	exon	51145747	51146646	51145747	ID=MS.gene057415.t1.exon1;Parent=MS.gene057415.t1
chr2.1	CDS	51145747	51146646	51145747	ID=cds.MS.gene057415.t1;Parent=MS.gene057415.t1
chr2.1	exon	51145145	51145574	51145145	ID=MS.gene057415.t1.exon2;Parent=MS.gene057415.t1
chr2.1	CDS	51145145	51145574	51145145	ID=cds.MS.gene057415.t1;Parent=MS.gene057415.t1
chr2.1	exon	51144076	51144647	51144076	ID=MS.gene057415.t1.exon3;Parent=MS.gene057415.t1
chr2.1	CDS	51144076	51144647	51144076	ID=cds.MS.gene057415.t1;Parent=MS.gene057415.t1

Gene Sequence

>MS.gene057415

ATGGCCGCTGCTGCCAACAGCATCCTCCTCCTCCTCCTCCTCCTCTCTCTCTCCATTCTTTCTCTCTCCACCGCACAACCACCACCTTCAGAAACACAAGCCCTCCTTAAACTAAAACAATCCTTAACAAACTCAGACAAAATCTTGTCCACATGGATACCAAACGTCTCTCCATGTTCCGGTACGTGGGTCGGCGTTGTTTGCTTCGACAATGTGATCACAGGCCTTCATTTATCAGACCTTCAACTCTCCGGTACAATAGACGTCGATGCCATCGTGGAGATTCGAGGCCTGAGGACGCTTAGCTTTGTCAACAACTCCTTCACCGGTCCTATTCCGCAGTTCAATAAACTCGGCGCCATAAAATCTCTTCTCCTGCAACAAAACCAATTCTCTGGTCCTATTCCTGGAGATTTCTTCGCCCAGTTAACCTCCTTGAAGAAAGTATGGCTGTCAGGTAATAAATTCTCCGGAAATATTCCGCCTTCGTTAACCGAACTTGATCTTCTCAAAGAGCTTCACCTCGAAGGGAATGAATTCTCCGGTCAGCTTCCGAGTCTTAAACAAGATATCAAATCATTTGACGTGTCGAATAACAAACTAGAAGGTCCGATTCCCGAAAGTCTCGTGAGATTCGGGCCGGTTTCTTTTGCTGGAAATGAAGGACTGTGTGGAAAACCGTTGGAAAAACAATGTGACAGTTCATCTGCTGCTGAATATACGCTACCGGATTCTAAAACAGAAAGTTCCAGTTCGAGTTGGGTGCCTCAAGTGATAGGACTTGTGATTTTGGCAGTTATAGCAGCGGTTATAGGTCTGTTTGTGAAGTCGAGGCAGCGGAGAAGAGAAGACGATTTTAGCGTGGTGAGCCGAGACAGCAGTGTCGACGAAGTGATGCAGGTAATAGACACAAAATCTTTATAGAAGGGAAAAACCTTTGAACATTCATCAATAACTTCCGCGTCAAGTTAGCAAAAATATCGAAAAGAATTTGCATTCTTTCGCTTTATTTAATGATATGTTTTCACACGAGTCATAATAATAATTTAAATAAGTTAAATCATTGTTACAGGTGCGCGTGCCGATAAGTAGAGCTTCATCTGCATCAGAAAGAGTTGGGAGAAGGAATGTGGGAGAATCTTCGAAAAGAGGAGGAGCGGGGGGTGGGAGTAGAAATGGGATTGGTGATATTGTGATGGTGAATGATGAGAAGGGTTCATTTGGTTTACAAGATTTGATGAAAGCAGCTGCTGAGGTATTGGGGAACGGTGGATTGGGATCGGCTTATAAGGCCGCGATGGCGAGTGGGTTGAGTGTAGTGGTGAAGAGAATGAGGGAGATGAATAAAATTGGGAAAGATGTGTTTGATGCTGAGATGAGACAGTTTGGGAGGATTAGACATGCTAATATTTTGACTCCTTTGGCTTATCATTATCGTCGAGAGGAGAAGCTTTTTGTTACTGAGTATAAGCCTAAAGGAAGCTTGTTATATGTCTTGCACGGTATGCATATTCTTTACATCACGTTATGCATTGTTCATATTCCGCACTAAACAAATGTAAAAATGCTGTAAAATATGTTAAAAAGATACATCCCTAGAAAGTATTTGCAATCCGCAATTGTAATTGCAGCTGCAAAATAAATGATTTTGAGGTCTTTCGTGACCACAATCTGTCTGCAACATAAAAGTTTGCAGTGTAACCGCAACTGTGACCATAATTTAAAACCATACTTGGTGGTTGTTTTAGTACATTTTTAGCGAGGAATCAGATTAACTTGACCTAAGTTTTATAACTCGGTATCAGGTCCAAGAACCGACTAATCCAAGGGATCTAATCCCACCGTCCACTTGCGAGGGGCCCATTTAAAGCTAGTTCTAGCTCTGTATGGACTTAGCCCACTTGCCTTTATACATAAGCACTTAACTTATTAAGATGTTTATCCAACCAGCATTTCCATATGTTGATAACACAATGAATGTGTAATTATGTTTTCTCAGGTGACAGAGGAATGTCCCATGCTGAGTTAACATGGCCAAACCGCTTAAAGATTGCTAAAGGAATTGCAAGAGGGTTAAGCTTCCTTTACACTGAATTTTCAACCTATGACTTACCTCATGGAAATCTGAAATCAAGCAATGTTATACTAACTAATGATTATGAGCCTCTTTTAAGTGACTATGCTTTTCAACCACTAATCAACCCGAGCATTGCAGTGCAATCAATGTTTGCATACAAAACACCAGATTACGTTCAAAATCAAAAGCTTTCGCAGAAAGCCGATGTTTATTGTCTCGGAATCATCATTCTTGAACTCATTACAGGAAAATTCCCTTCTCAGTATCATAGTAACGGAAAAGGTGGAACCGATGTTGTTCAATGGGTCCTCACAGCAATTTCTGAGAGAAGAGAAGCTGAATTGATTGATCCTGAGTTAAAAAATAATGCATCAAATTCAACCAGTAATATGCTGCAACTTCTCCTTATTGGTGCTGCTTGTACCGAAAGCAATCCGGAACAAAGACTACACATGAAGGAAGCTATTAGAAGGATAGAGGAAGTACAACTCTAA

Protein sequence

>MS.gene057415.t1

MAAAANSILLLLLLLSLSILSLSTAQPPPSETQALLKLKQSLTNSDKILSTWIPNVSPCSGTWVGVVCFDNVITGLHLSDLQLSGTIDVDAIVEIRGLRTLSFVNNSFTGPIPQFNKLGAIKSLLLQQNQFSGPIPGDFFAQLTSLKKVWLSGNKFSGNIPPSLTELDLLKELHLEGNEFSGQLPSLKQDIKSFDVSNNKLEGPIPESLVRFGPVSFAGNEGLCGKPLEKQCDSSSAAEYTLPDSKTESSSSSWVPQVIGLVILAVIAAVIGLFVKSRQRRREDDFSVVSRDSSVDEVMQVRVPISRASSASERVGRRNVGESSKRGGAGGGSRNGIGDIVMVNDEKGSFGLQDLMKAAAEVLGNGGLGSAYKAAMASGLSVVVKRMREMNKIGKDVFDAEMRQFGRIRHANILTPLAYHYRREEKLFVTEYKPKGSLLYVLHGDRGMSHAELTWPNRLKIAKGIARGLSFLYTEFSTYDLPHGNLKSSNVILTNDYEPLLSDYAFQPLINPSIAVQSMFAYKTPDYVQNQKLSQKADVYCLGIIILELITGKFPSQYHSNGKGGTDVVQWVLTAISERREAELIDPELKNNASNSTSNMLQLLLIGAACTESNPEQRLHMKEAIRRIEEVQL