AlfalfaGEDB | MS.gene057597

M. sativa cultivar XinJiangDaYe / MS.gene057597

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057597.t1	XP_004515231.1	94.6	74	4	0	1	74	970	1043	2.90E-33	150.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057597.t1	G7JP36	97.3	74	2	0	1	74	963	1036	2.1e-33	150.6

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene057597	MS.gene057598	0.811989	5.31E-51	-1.69E-46
MS.gene057597	MS.gene96242	0.801481	8.82E-49	-1.69E-46

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PPI:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 0 sgRNAs with CRISPR-Local

Find 21 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	ACACAACGTCTAATAAATTG+CGG	-	33144:9910-9929	MS.gene057597:CDS	30.0%
	AATCAGGTCTGATGAAAGTT+TGG	-	33144:9808-9827	MS.gene057597:CDS	35.0%
	ATCAGGTCTGATGAAAGTTT+GGG	-	33144:9809-9828	MS.gene057597:CDS	35.0%
	ATTACATAAGGATGCTTCAG+AGG	-	33144:9775-9794	MS.gene057597:CDS	35.0%
	GCAATTTATTAGACGTTGTG+TGG	+	33144:9911-9930	MS.gene057597:intergenic	35.0%
	CAACGTCTAATAAATTGCGG+CGG	-	33144:9913-9932	MS.gene057597:CDS	40.0%
	TATTAGACGTTGTGTGGAAG+TGG	+	33144:9905-9924	MS.gene057597:intergenic	40.0%
	AGTTTGGGAATCCGTTTCTC+AGG	-	33144:9824-9843	MS.gene057597:CDS	45.0%
	GTTTGGGAATCCGTTTCTCA+GGG	-	33144:9825-9844	MS.gene057597:CDS	45.0%
	CTGGACTGAAGGGATATAGC+TGG	+	33144:9854-9873	MS.gene057597:intergenic	50.0%

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Chromosome	Type	Strat	End	Strand	Name
33144	gene	9733	9958	9733	ID=MS.gene057597
33144	mRNA	9733	9958	9733	ID=MS.gene057597.t1;Parent=MS.gene057597
33144	exon	9733	9958	9733	ID=MS.gene057597.t1.exon1;Parent=MS.gene057597.t1
33144	CDS	9733	9958	9733	ID=cds.MS.gene057597.t1;Parent=MS.gene057597.t1

Gene Sequence	>MS.gene057597 AAAGGAGAAGCCATAGCTATCAACTTGAATTTTTGTTTAACTATTACATAAGGATGCTTCAGAGGCATCAGAAGCAATCAGGTCTGATGAAAGTTTGGGAATCCGTTTCTCAGGGCCTCCAGCTATATCCCTTCAGTCCAGAACTTTTAAAAGGTGTAGTGGAAGTTGGCCACTTCCACACAACGTCTAATAAATTGCGGCGGATCCTAGATGAATGCTGTTACAA
Protein sequence	>MS.gene057597.t1 KGEAIAINLNFCLTITUGCFRGIRSNQVUUKFGNPFLRASSYIPSVQNFUKVUWKLATSTQRLINCGGSUMNAVT

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