AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene05779

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05779.t1 MTR_3g031770 96.320 462 16 1 1 462 1 461 0.0 929
MS.gene05779.t1 MTR_2g027560 47.430 428 221 2 27 450 27 454 5.33e-141 414
MS.gene05779.t1 MTR_1g010120 44.872 468 249 6 10 468 6 473 1.07e-138 407
MS.gene05779.t1 MTR_4g124440 44.244 443 240 5 20 456 20 461 5.07e-128 381
MS.gene05779.t1 MTR_4g112025 40.000 460 265 7 8 459 14 470 6.35e-122 366
MS.gene05779.t1 MTR_1g053320 41.978 455 253 8 15 460 19 471 6.51e-121 362
MS.gene05779.t1 MTR_7g085390 44.622 437 234 7 26 455 24 459 9.82e-120 359
MS.gene05779.t1 MTR_3g108600 43.681 451 229 7 12 457 16 446 5.32e-119 357
MS.gene05779.t1 MTR_3g095050 41.972 436 246 7 27 457 33 466 2.81e-115 348
MS.gene05779.t1 MTR_8g092070 39.387 457 266 6 27 478 33 483 3.00e-114 348
MS.gene05779.t1 MTR_6g032820 45.301 415 216 8 26 430 24 437 1.43e-113 342
MS.gene05779.t1 MTR_4g134280 46.628 341 174 3 116 450 2 340 1.17e-107 325
MS.gene05779.t1 MTR_4g088155 33.111 450 269 19 22 447 17 458 2.43e-65 218
MS.gene05779.t1 MTR_1g031900 35.520 442 242 16 28 446 24 445 5.47e-61 207
MS.gene05779.t1 MTR_1g031900 35.520 442 242 16 28 446 24 445 7.47e-61 207
MS.gene05779.t1 MTR_6g088885 31.461 445 262 16 28 446 27 454 3.61e-60 205
MS.gene05779.t1 MTR_1g056640 30.803 461 273 13 27 447 37 491 1.25e-58 201
MS.gene05779.t1 MTR_5g085580 32.373 451 266 13 28 447 25 467 3.19e-58 199
MS.gene05779.t1 MTR_4g069940 31.590 459 285 14 6 447 14 460 5.29e-57 196
MS.gene05779.t1 MTR_8g085720 32.192 438 265 13 28 447 26 449 8.86e-57 196
MS.gene05779.t1 MTR_3g116510 31.429 455 290 13 9 446 5 454 1.78e-56 194
MS.gene05779.t1 MTR_3g065460 30.642 483 293 15 10 469 5 468 1.34e-54 190
MS.gene05779.t1 MTR_4g132280 31.486 451 264 16 28 454 45 474 2.22e-54 190
MS.gene05779.t1 MTR_5g078200 30.835 467 282 14 10 454 5 452 5.78e-53 189
MS.gene05779.t1 MTR_8g012400 29.873 472 293 19 1 447 1 459 5.74e-52 182
MS.gene05779.t1 MTR_7g053500 29.186 442 281 17 29 447 27 459 4.27e-51 180
MS.gene05779.t1 MTR_3g083580 30.769 455 282 15 10 446 7 446 4.03e-50 178
MS.gene05779.t1 MTR_5g078200 30.805 435 260 14 42 454 4 419 4.53e-50 180
MS.gene05779.t1 MTR_4g010200 34.783 322 198 8 29 343 34 350 1.07e-48 172
MS.gene05779.t1 MTR_7g026340 31.057 454 260 22 23 446 18 448 3.38e-48 172
MS.gene05779.t1 MTR_4g076570 31.366 322 210 7 25 343 19 332 8.69e-48 169
MS.gene05779.t1 MTR_1g052430 31.988 322 208 7 25 343 29 342 1.39e-47 169
MS.gene05779.t1 MTR_4g076255 33.333 330 186 14 25 343 22 328 8.16e-47 165
MS.gene05779.t1 MTR_4g076470 32.143 336 209 12 12 342 4 325 5.20e-46 163
MS.gene05779.t1 MTR_4g083500 28.632 475 292 15 20 459 36 498 5.24e-46 168
MS.gene05779.t1 MTR_4g076490 34.688 320 190 12 28 343 97 401 9.04e-46 165
MS.gene05779.t1 MTR_8g102340 32.203 413 225 19 71 446 24 418 1.32e-45 166
MS.gene05779.t1 MTR_4g076500 31.889 323 205 10 25 343 75 386 4.55e-45 162
MS.gene05779.t1 MTR_2g034440 30.312 320 214 6 25 342 19 331 4.61e-45 160
MS.gene05779.t1 MTR_4g076440 31.657 338 210 13 12 343 4 326 2.54e-44 159
MS.gene05779.t1 MTR_2g034480 29.940 334 225 6 15 346 14 340 9.86e-44 158
MS.gene05779.t1 MTR_4g076430 32.249 338 208 13 12 343 4 326 1.20e-43 157
MS.gene05779.t1 MTR_4g084480 32.184 348 219 10 13 351 17 356 2.52e-43 157
MS.gene05779.t1 MTR_4g084480 32.184 348 219 10 13 351 10 349 3.40e-43 157
MS.gene05779.t1 MTR_4g084480 32.184 348 219 10 13 351 17 356 3.56e-43 157
MS.gene05779.t1 MTR_2g034470 30.473 338 225 7 25 360 27 356 7.97e-43 155
MS.gene05779.t1 MTR_3g080410 34.251 327 197 10 27 343 25 343 4.21e-42 153
MS.gene05779.t1 MTR_4g114850 31.195 343 217 10 29 359 27 362 1.43e-41 152
MS.gene05779.t1 MTR_7g081350 31.230 317 203 9 24 336 23 328 3.04e-41 150
MS.gene05779.t1 MTR_4g114850 31.790 324 205 9 29 343 27 343 5.56e-41 151
MS.gene05779.t1 MTR_4g114850 31.790 324 205 9 29 343 27 343 6.29e-41 150
MS.gene05779.t1 MTR_1g022160 28.509 456 284 14 28 446 24 474 6.94e-41 153
MS.gene05779.t1 MTR_2g034470 30.395 329 218 8 35 360 1 321 1.15e-40 149
MS.gene05779.t1 MTR_1g022160 28.289 456 285 14 28 446 24 474 1.78e-40 152
MS.gene05779.t1 MTR_7g053500 28.974 390 245 17 81 447 2 382 7.63e-40 148
MS.gene05779.t1 MTR_1g022160 27.778 468 289 15 28 458 24 479 7.80e-39 147
MS.gene05779.t1 MTR_4g052970 30.631 333 209 12 27 348 28 349 1.67e-37 141
MS.gene05779.t1 MTR_1g007810 33.537 328 195 13 18 333 4 320 4.23e-37 140
MS.gene05779.t1 MTR_8g012400 29.231 390 241 17 81 447 2 379 5.89e-37 140
MS.gene05779.t1 MTR_7g081370 29.841 315 195 9 25 336 25 316 9.27e-36 135
MS.gene05779.t1 MTR_2g019345 30.172 348 224 12 8 345 3 341 6.88e-34 132
MS.gene05779.t1 MTR_3g116510 30.530 321 207 9 139 446 3 320 2.30e-33 129
MS.gene05779.t1 MTR_1g022160 30.183 328 216 9 28 347 24 346 2.40e-32 128
MS.gene05779.t1 MTR_2g086530 29.096 354 220 13 7 345 8 345 9.92e-32 125
MS.gene05779.t1 MTR_2g086530 29.819 332 202 13 29 345 9 324 4.66e-31 123
MS.gene05779.t1 MTR_1g077990 28.701 331 220 10 21 343 24 346 6.34e-30 121
MS.gene05779.t1 MTR_5g081720 27.245 323 212 11 44 355 53 363 2.75e-28 115
MS.gene05779.t1 MTR_8g085440 45.631 103 42 5 352 447 21 116 3.41e-17 77.8
MS.gene05779.t1 MTR_4g036680 35.714 98 57 3 248 343 82 175 1.01e-13 70.9
MS.gene05779.t1 MTR_8g085420 44.792 96 39 5 352 440 21 109 1.42e-13 68.2
MS.gene05779.t1 MTR_4g036775 35.714 98 57 3 248 343 82 175 3.20e-13 69.3
MS.gene05779.t1 MTR_8g085390 43.617 94 49 4 357 447 22 114 3.89e-12 65.5
MS.gene05779.t1 MTR_4g079530 37.113 97 56 4 365 457 37 132 3.16e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05779.t1 AT5G58480 68.056 432 134 2 26 455 24 453 0.0 614
MS.gene05779.t1 AT4G17180 46.404 431 220 4 24 450 21 444 3.72e-143 419
MS.gene05779.t1 AT5G20870 44.754 467 244 7 3 457 6 470 5.95e-133 394
MS.gene05779.t1 AT4G31140 43.488 453 249 5 9 455 6 457 2.19e-132 392
MS.gene05779.t1 AT5G58090 43.886 458 252 5 25 477 19 476 1.63e-131 389
MS.gene05779.t1 AT3G24330 43.006 479 263 8 8 477 18 495 2.95e-129 384
MS.gene05779.t1 AT2G19440 45.312 448 235 9 10 450 4 448 2.16e-124 371
MS.gene05779.t1 AT2G19440 45.312 448 235 9 10 450 4 448 2.16e-124 371
MS.gene05779.t1 AT5G64790 42.000 450 255 6 16 460 16 464 8.59e-124 370
MS.gene05779.t1 AT1G64760 42.620 481 267 8 4 477 1 479 1.55e-122 366
MS.gene05779.t1 AT1G64760 42.620 481 267 8 4 477 1 479 1.55e-122 366
MS.gene05779.t1 AT3G04010 42.795 458 250 9 27 474 32 487 2.94e-122 366
MS.gene05779.t1 AT5G18220 42.333 463 248 10 27 473 29 488 1.35e-118 357
MS.gene05779.t1 AT4G26830 33.115 459 281 13 8 447 1 452 5.98e-68 224
MS.gene05779.t1 AT4G26830 33.790 438 268 12 25 447 26 456 8.26e-67 222
MS.gene05779.t1 AT5G55180 33.485 439 271 11 25 447 24 457 1.85e-66 221
MS.gene05779.t1 AT5G55180 33.565 432 266 11 25 440 24 450 1.16e-63 214
MS.gene05779.t1 AT4G14080 32.174 460 264 17 17 447 34 474 3.65e-62 210
MS.gene05779.t1 AT2G01630 34.615 442 248 15 28 447 23 445 5.82e-62 210
MS.gene05779.t1 AT3G23770 31.416 452 276 17 21 447 30 472 3.92e-61 207
MS.gene05779.t1 AT2G01630 34.483 435 244 15 28 440 23 438 3.01e-60 204
MS.gene05779.t1 AT5G56590 32.662 447 254 16 28 446 26 453 5.07e-59 202
MS.gene05779.t1 AT1G66250 32.727 440 256 15 28 446 32 452 2.54e-58 201
MS.gene05779.t1 AT2G05790 31.486 451 274 12 27 447 24 469 5.24e-58 199
MS.gene05779.t1 AT3G07320 31.306 444 281 15 22 447 19 456 2.57e-57 197
MS.gene05779.t1 AT4G34480 31.360 456 288 13 6 447 4 448 6.07e-56 194
MS.gene05779.t1 AT1G11820 31.306 444 260 16 28 447 44 466 1.78e-55 193
MS.gene05779.t1 AT1G11820 31.178 433 261 15 28 440 44 459 3.46e-53 186
MS.gene05779.t1 AT5G24318 30.573 471 286 18 1 446 1 455 6.82e-53 185
MS.gene05779.t1 AT5G24318 30.753 465 281 18 1 440 1 449 8.01e-52 182
MS.gene05779.t1 AT3G13560 32.723 437 260 13 28 446 26 446 8.93e-51 180
MS.gene05779.t1 AT3G13560 32.723 437 260 13 28 446 26 446 8.93e-51 180
MS.gene05779.t1 AT3G13560 32.723 437 260 13 28 446 26 446 8.93e-51 180
MS.gene05779.t1 AT3G13560 32.723 437 260 13 28 446 26 446 8.93e-51 180
MS.gene05779.t1 AT3G13560 32.723 437 260 13 28 446 26 446 8.93e-51 180
MS.gene05779.t1 AT2G16230 30.769 455 251 19 28 447 25 450 2.80e-50 179
MS.gene05779.t1 AT3G57260 33.333 321 197 7 28 345 32 338 7.94e-50 174
MS.gene05779.t1 AT2G39640 29.956 454 297 18 3 448 4 444 9.38e-50 178
MS.gene05779.t1 AT3G57260 33.333 321 197 7 28 345 48 354 2.43e-49 172
MS.gene05779.t1 AT3G55430 30.444 450 267 20 21 446 22 449 7.18e-49 174
MS.gene05779.t1 AT4G29360 27.066 484 304 15 7 452 9 481 9.68e-47 170
MS.gene05779.t1 AT3G57270 32.308 325 201 8 28 345 27 339 1.27e-46 165
MS.gene05779.t1 AT4G29360 26.767 467 296 14 24 452 33 491 6.85e-46 168
MS.gene05779.t1 AT2G01630 33.245 379 216 13 28 390 23 380 4.45e-44 159
MS.gene05779.t1 AT3G57240 32.710 321 198 8 28 345 35 340 4.29e-43 155
MS.gene05779.t1 AT4G16260 30.448 335 217 10 13 343 10 332 4.17e-42 153
MS.gene05779.t1 AT4G34480 31.831 355 226 9 6 351 4 351 8.91e-41 150
MS.gene05779.t1 AT3G61810 30.564 337 209 8 20 344 47 370 3.83e-40 149
MS.gene05779.t1 AT3G15800 31.928 332 210 9 29 351 44 368 5.07e-40 149
MS.gene05779.t1 AT2G26600 31.481 324 206 9 29 343 35 351 6.92e-40 148
MS.gene05779.t1 AT5G24318 31.034 377 226 16 13 369 7 369 1.33e-39 147
MS.gene05779.t1 AT4G16260 30.464 302 195 9 46 343 13 303 1.52e-38 142
MS.gene05779.t1 AT5G42720 31.389 360 220 12 5 349 3 350 5.46e-38 144
MS.gene05779.t1 AT3G55780 29.395 347 202 10 28 350 31 358 1.98e-37 141
MS.gene05779.t1 AT4G18340 27.957 372 249 11 3 363 7 370 5.64e-37 140
MS.gene05779.t1 AT4G18340 27.957 372 249 11 3 363 7 370 1.01e-36 140
MS.gene05779.t1 AT1G11820 30.655 336 210 11 28 349 44 370 1.72e-36 139
MS.gene05779.t1 AT1G30080 29.630 351 227 11 2 343 13 352 9.34e-36 137
MS.gene05779.t1 AT1G30080 29.630 351 227 11 2 343 13 352 2.10e-35 136
MS.gene05779.t1 AT4G34480 31.269 323 199 11 139 447 24 337 2.41e-33 130
MS.gene05779.t1 AT5G20340 28.025 314 210 8 25 333 40 342 5.13e-33 129
MS.gene05779.t1 AT5G24318 29.503 322 202 11 142 446 3 316 1.30e-32 127
MS.gene05779.t1 AT3G46570 29.513 349 226 12 12 350 11 349 2.51e-32 127
MS.gene05779.t1 AT1G33220 27.848 316 214 8 23 333 29 335 2.53e-32 126
MS.gene05779.t1 AT5G20560 27.217 327 221 9 14 333 18 334 4.98e-32 125
MS.gene05779.t1 AT5G20390 25.526 333 230 9 7 333 12 332 1.23e-31 124
MS.gene05779.t1 AT5G42100 30.588 340 220 11 16 345 15 348 1.91e-31 125
MS.gene05779.t1 AT5G42100 30.000 340 222 11 16 345 15 348 2.10e-31 125
MS.gene05779.t1 AT2G27500 27.410 332 224 10 26 348 27 350 1.54e-30 122
MS.gene05779.t1 AT2G27500 27.410 332 224 10 26 348 27 350 2.73e-30 122
MS.gene05779.t1 AT5G20330 27.848 316 212 9 23 333 29 333 2.65e-29 118
MS.gene05779.t1 AT1G32860 28.049 328 217 11 27 343 28 347 6.80e-28 115
MS.gene05779.t1 AT1G77780 25.890 309 214 8 29 333 25 322 1.04e-26 111
MS.gene05779.t1 AT2G26600 29.167 264 171 9 89 343 1 257 1.51e-23 100
MS.gene05779.t1 AT1G77790 25.714 350 241 10 2 343 3 341 2.12e-23 101
MS.gene05779.t1 AT2G27500 25.090 279 192 10 79 348 2 272 1.19e-16 81.3
MS.gene05779.t1 AT5G63225 35.556 90 46 4 362 444 22 106 2.17e-11 61.2
MS.gene05779.t1 AT1G66870 34.343 99 62 2 351 446 39 137 4.07e-11 61.2
MS.gene05779.t1 AT1G66870 34.343 99 62 2 351 446 12 110 6.48e-11 59.7

Find 103 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGTTCTTCAAGCTCTTTC+TGG 0.064067 3.1:+49508215 MS.gene05779:CDS
AACAACCCTCTTGGCATCTT+TGG 0.240136 3.1:+49511579 MS.gene05779:CDS
CGTCTAATGCAGAACTTTAC+AGG 0.243220 3.1:+49511524 MS.gene05779:CDS
GAAACAACGATTTCCATATT+AGG 0.260145 3.1:-49510944 None:intergenic
TGCAACTGCAAAAGCTTTAG+AGG 0.278675 3.1:+49511297 MS.gene05779:CDS
GAGCTGAAAGTTGTGACTTT+GGG 0.288892 3.1:+49511434 MS.gene05779:CDS
AAAAGTAGGATTTCCTAATA+TGG 0.301102 3.1:+49510931 MS.gene05779:CDS
ATGTTCTTCAAGCTCTTTCT+GGG 0.303137 3.1:+49508216 MS.gene05779:CDS
CAGAAGTTTCACTACTTTCA+TGG 0.320356 3.1:-49508147 None:intergenic
ATCCATCAGATGATCGTTGC+AGG 0.343975 3.1:+49511482 MS.gene05779:CDS
CTAGAAAAGTTGCTGATACT+TGG 0.346987 3.1:+49508297 MS.gene05779:CDS
TTTCACTTTGTTGATGTTGT+TGG 0.356479 3.1:-49508174 None:intergenic
TGCTATGAAGGTGGTTCATT+AGG 0.360141 3.1:-49511036 None:intergenic
GTTACTCGCTATGTTTCTAA+TGG 0.362830 3.1:+49508332 MS.gene05779:CDS
GAACCATTTCTTAAAAGTTA+TGG 0.367487 3.1:+49510533 MS.gene05779:CDS
TAGGCCTTTCATGAAGGTTT+CGG 0.367684 3.1:-49511017 None:intergenic
TACAGAAGCGATGTTGAAAA+TGG 0.373007 3.1:-49508072 None:intergenic
TCAAAATACCACGTGGATCT+TGG 0.373693 3.1:+49511184 MS.gene05779:CDS
GAAATCGTTGTTTCAAAGAT+TGG 0.377594 3.1:+49510953 MS.gene05779:CDS
TGGAGATTTCGAAAGGCATT+GGG 0.385946 3.1:+49511138 MS.gene05779:CDS
CTGAAGCCATAGGTGTGAAC+TGG 0.396483 3.1:+49508096 MS.gene05779:CDS
ACTACTTTCATGGGTGGTAG+TGG 0.404757 3.1:-49508137 None:intergenic
CTGGAGATTTCGAAAGGCAT+TGG 0.409493 3.1:+49511137 MS.gene05779:CDS
TGGGGCTTATTCACCTTTGA+CGG 0.419927 3.1:+49511157 MS.gene05779:CDS
CGTCCACCGAAGCGCATCTC+AGG 0.423281 3.1:+49510687 MS.gene05779:CDS
GTCTGAAGGAAGGTTAGAAA+TGG 0.425622 3.1:-49510788 None:intergenic
AGAGCTGAAAGTTGTGACTT+TGG 0.430370 3.1:+49511433 MS.gene05779:CDS
TAGAAAAGTTGCTGATACTT+GGG 0.449639 3.1:+49508298 MS.gene05779:CDS
AACCCTCTTGGCATCTTTGG+AGG 0.454084 3.1:+49511582 MS.gene05779:CDS
GATTGTACTGCACTATCTTC+TGG 0.457633 3.1:+49511334 MS.gene05779:CDS
GAAGAAGGTGAATGTGATGA+AGG 0.457940 3.1:-49508039 None:intergenic
GAAAGAGCTTGAAGAACATC+AGG 0.463063 3.1:-49508212 None:intergenic
GAAGGTTAGAAATGGAGAAA+TGG 0.475933 3.1:-49510780 None:intergenic
GGTTCCCCAGTTCACACCTA+TGG 0.476387 3.1:-49508102 None:intergenic
AGAAGTTTCACTACTTTCAT+GGG 0.477674 3.1:-49508146 None:intergenic
GGAGAAATGGTCACAAAGAA+AGG 0.481696 3.1:-49510767 None:intergenic
ATACCACGTGGATCTTGGCC+AGG 0.491196 3.1:+49511189 MS.gene05779:CDS
CGAACAATTCCATCCCTTCA+CGG 0.491302 3.1:+49510556 MS.gene05779:CDS
TGGTAGTGGGTGTGAAGCCA+TGG 0.492289 3.1:-49508123 None:intergenic
ATGCGCTTCGGTGGACGAGT+TGG 0.498782 3.1:-49510681 None:intergenic
CTGAAAGTTGTGACTTTGGG+GGG 0.500962 3.1:+49511437 MS.gene05779:CDS
CTACTTTCATGGGTGGTAGT+GGG 0.501203 3.1:-49508136 None:intergenic
GTTCATTAGGCCTTTCATGA+AGG 0.505894 3.1:-49511023 None:intergenic
GCGTTTGCAGCTCCATCGGT+TGG 0.511309 3.1:-49510980 None:intergenic
TTTACTAGTAACAACCCTCT+TGG 0.516527 3.1:+49511570 MS.gene05779:CDS
AAAGCATATGATATATTACT+AGG 0.522566 3.1:-49511382 None:intergenic
GAACCACCTTCATAGCAACT+TGG 0.525889 3.1:+49511042 MS.gene05779:CDS
GTGTTCCCAAGTTGCTATGA+AGG 0.527307 3.1:-49511048 None:intergenic
GAAGGTTTCGGCTAAGAAAG+AGG 0.527357 3.1:-49511005 None:intergenic
GGTTGCGTTTGCAGCTCCAT+CGG 0.532945 3.1:-49510984 None:intergenic
GCTCTTTCTGGGTCTAACAT+TGG 0.536633 3.1:+49508227 MS.gene05779:CDS
GTCAGACCTGAGATGCGCTT+CGG 0.538256 3.1:-49510693 None:intergenic
CAATTCCATCCCTTCACGGT+TGG 0.538597 3.1:+49510560 MS.gene05779:CDS
TGAAGCCATAGGTGTGAACT+GGG 0.539101 3.1:+49508097 MS.gene05779:CDS
AAGATTGGTTGGCCAACCGA+TGG 0.542326 3.1:+49510968 MS.gene05779:CDS
TCGTTGTTTCAAAGATTGGT+TGG 0.548740 3.1:+49510957 MS.gene05779:CDS
TTAGCCGAAACCTTCATGAA+AGG 0.550000 3.1:+49511013 MS.gene05779:CDS
CAGCACCAACCGTGAAGGGA+TGG 0.553892 3.1:-49510565 None:intergenic
TCCTTTGATCCTCGTCGAGA+AGG 0.557780 3.1:-49511105 None:intergenic
GCCTTCTCGACGAGGATCAA+AGG 0.558390 3.1:+49511104 MS.gene05779:CDS
TGTATGTTTCGTGTGGTGGC+CGG 0.561056 3.1:-49511075 None:intergenic
AATGGTGAAGAAGAAGAAGA+AGG 0.561907 3.1:-49508054 None:intergenic
TAAATGTATGTTTCGTGTGG+TGG 0.562388 3.1:-49511079 None:intergenic
ACTGCACGCCCTCATAAACT+TGG 0.565039 3.1:+49510848 MS.gene05779:CDS
TTAGACGTGTGAATCTCAAT+CGG 0.569631 3.1:-49511508 None:intergenic
TCACTAGGCTCTTTGTACCC+TGG 0.570415 3.1:-49511207 None:intergenic
GATCAAAGGAGCATTACAGC+TGG 0.573291 3.1:+49511118 MS.gene05779:CDS
AACCTGCAACGATCATCTGA+TGG 0.575288 3.1:-49511484 None:intergenic
TTCCCAAGTTGCTATGAAGG+TGG 0.575432 3.1:-49511045 None:intergenic
AGCTGAAAGTTGTGACTTTG+GGG 0.575732 3.1:+49511435 MS.gene05779:CDS
TCTAACATTGGTGTCACTGT+TGG 0.577685 3.1:+49508239 MS.gene05779:CDS
TCGAGTATCTTTCTTCCAAG+TGG 0.578772 3.1:+49511242 MS.gene05779:CDS
TGTACTGCACTATCTTCTGG+TGG 0.582259 3.1:+49511337 MS.gene05779:CDS
AACCACCTTCATAGCAACTT+GGG 0.582302 3.1:+49511043 MS.gene05779:CDS
AGACCTGAGATGCGCTTCGG+TGG 0.586712 3.1:-49510690 None:intergenic
ATAGCAGCACCAACCGTGAA+GGG 0.587855 3.1:-49510569 None:intergenic
CATAGCAGCACCAACCGTGA+AGG 0.588280 3.1:-49510570 None:intergenic
GTTGTTCACAACACACCACT+TGG 0.588716 3.1:-49511257 None:intergenic
GTGTGCAGATATGTTGCTGT+TGG 0.595372 3.1:+49510506 MS.gene05779:intron
AGGTGTGAACTGGGGAACCA+TGG 0.597334 3.1:+49508106 MS.gene05779:CDS
GCTTCTGTATCTGAAGCCAT+AGG 0.609080 3.1:+49508086 MS.gene05779:CDS
TTACAGCTGGAGATTTCGAA+AGG 0.610814 3.1:+49511131 MS.gene05779:CDS
CATTTATAGCCTTCTCGACG+AGG 0.612382 3.1:+49511096 MS.gene05779:CDS
AACCTCCAAAGATGCCAAGA+GGG 0.615636 3.1:-49511584 None:intergenic
GTTTCGTGTGGTGGCCGGTG+TGG 0.617110 3.1:-49511070 None:intergenic
GATCTTGCTTTAACATCACA+TGG 0.619766 3.1:+49511359 MS.gene05779:CDS
ACGATCATCTGATGGATCAA+CGG 0.624728 3.1:-49511476 None:intergenic
AAATGTGAGGAGCTCGACCA+TGG 0.628665 3.1:-49510726 None:intergenic
AGTTTCACTACTTTCATGGG+TGG 0.633428 3.1:-49508143 None:intergenic
TCAAAACTATCAGAGCTGCA+TGG 0.634686 3.1:-49510650 None:intergenic
TACCACGTGGATCTTGGCCA+GGG 0.644204 3.1:+49511190 MS.gene05779:CDS
GCTGAAAGTTGTGACTTTGG+GGG 0.646682 3.1:+49511436 MS.gene05779:CDS
GGAGATTTCGAAAGGCATTG+GGG 0.654576 3.1:+49511139 MS.gene05779:CDS
GCAACTTGGGAACACCACAC+CGG 0.660003 3.1:+49511056 MS.gene05779:CDS
TGTGATGAAGGAAGAAACAG+TGG 0.672525 3.1:-49508027 None:intergenic
GTCTAATGCAGAACTTTACA+GGG 0.675662 3.1:+49511525 MS.gene05779:CDS
AAACCTCCAAAGATGCCAAG+AGG 0.686940 3.1:-49511585 None:intergenic
GTCTGACATCAACAAAACCA+TGG 0.694847 3.1:+49510709 MS.gene05779:CDS
CGGCCAATCAAAATACCACG+TGG 0.701867 3.1:+49511177 MS.gene05779:CDS
CGTGCTTGTCGAGAAATGTG+AGG 0.707226 3.1:-49510739 None:intergenic
CTATAAATGTATGTTTCGTG+TGG 0.708772 3.1:-49511082 None:intergenic
GAAGCCATAGGTGTGAACTG+GGG 0.767819 3.1:+49508098 MS.gene05779:CDS
TACCCTGGCCAAGATCCACG+TGG 0.769411 3.1:-49511192 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATTTTTAATACATTGT+TGG + chr3.1:49508426-49508445 MS.gene05779:intron 10.0%
!! AGAAAATATAGAATTAAAAG+AGG - chr3.1:49508390-49508409 None:intergenic 15.0%
!! TCAAAAAAAAATATTCACTT+TGG - chr3.1:49509609-49509628 None:intergenic 15.0%
!!! ATTTAAAACCATATATGTAA+AGG - chr3.1:49510479-49510498 None:intergenic 15.0%
!!! TGGATCTTATTTTAATATTT+TGG - chr3.1:49509589-49509608 None:intergenic 15.0%
!!! TTTAAAACCATATATGTAAA+GGG - chr3.1:49510478-49510497 None:intergenic 15.0%
!!! TTTTAGATGAAAATTTAACT+TGG + chr3.1:49510235-49510254 MS.gene05779:intron 15.0%
!! AAAGCATATGATATATTACT+AGG - chr3.1:49511385-49511404 None:intergenic 20.0%
!! AATTTAGTTGAACATATCTT+AGG - chr3.1:49510192-49510211 None:intergenic 20.0%
!! ATTGTTTGTTCTATAATTGT+GGG - chr3.1:49508817-49508836 None:intergenic 20.0%
!! GAATATTGTGTTAAAAATTG+TGG - chr3.1:49509313-49509332 None:intergenic 20.0%
!! TAAAATTTAACCAAATGTGT+TGG + chr3.1:49508717-49508736 MS.gene05779:intron 20.0%
!! TACTCTTAGTTGAAAAAATA+TGG + chr3.1:49510429-49510448 MS.gene05779:intron 20.0%
!! TATAGAATAAATAATGTCAC+AGG + chr3.1:49508567-49508586 MS.gene05779:intron 20.0%
!!! AAAAATTGTGGTTATTTTAC+AGG - chr3.1:49509301-49509320 None:intergenic 20.0%
!!! AAAATCAAGTGAAATGTTTT+TGG - chr3.1:49510813-49510832 None:intergenic 20.0%
!!! GTTTGTGTTATTAATAGTTA+GGG + chr3.1:49508860-49508879 MS.gene05779:intron 20.0%
!!! TGCTTTAAAAAAAGCAAAAT+TGG + chr3.1:49510604-49510623 MS.gene05779:CDS 20.0%
!!! TGCTTTTAATAGTTATTATC+AGG + chr3.1:49511399-49511418 MS.gene05779:CDS 20.0%
! AAAAGTAGGATTTCCTAATA+TGG + chr3.1:49510931-49510950 MS.gene05779:CDS 25.0%
! AATTATCAGCTAACATATTC+AGG + chr3.1:49509818-49509837 MS.gene05779:intron 25.0%
! ATAAAAGCTAATCATGAAAC+AGG + chr3.1:49509883-49509902 MS.gene05779:intron 25.0%
! ATGTTAGCTGATAATTTCTT+TGG - chr3.1:49509814-49509833 None:intergenic 25.0%
! CAATAATAAAGATGAATCGA+TGG + chr3.1:49509964-49509983 MS.gene05779:intron 25.0%
! CATAAATAATTCTTACCGTT+AGG - chr3.1:49509495-49509514 None:intergenic 25.0%
! CATTGTTTGTTCTATAATTG+TGG - chr3.1:49508818-49508837 None:intergenic 25.0%
! CTAACGGTAAGAATTATTTA+TGG + chr3.1:49509493-49509512 MS.gene05779:intron 25.0%
! GAACCATTTCTTAAAAGTTA+TGG + chr3.1:49510533-49510552 MS.gene05779:CDS 25.0%
! GTCGTCAACAATAATAATTT+AGG + chr3.1:49508682-49508701 MS.gene05779:intron 25.0%
! TATAGAACAAACAATGTCAT+AGG + chr3.1:49508822-49508841 MS.gene05779:intron 25.0%
! TATAGAAGTTTCATCTCATA+AGG + chr3.1:49509415-49509434 MS.gene05779:intron 25.0%
!! AAACTTTTGAGCAAAACATT+TGG - chr3.1:49508269-49508288 None:intergenic 25.0%
!! ATCACTGTTTTATCAAAAGT+AGG + chr3.1:49510917-49510936 MS.gene05779:CDS 25.0%
!! ATTTGTCAAAACTCTTTTCT+TGG + chr3.1:49510135-49510154 MS.gene05779:intron 25.0%
!! GGTTTGTGTTATTAATAGTT+AGG + chr3.1:49508859-49508878 MS.gene05779:intron 25.0%
!!! AGCTATTTTTGTATGTTTTG+TGG - chr3.1:49510874-49510893 None:intergenic 25.0%
!!! ATATTTGTTGTTATGTCCTT+TGG + chr3.1:49508477-49508496 MS.gene05779:intron 25.0%
AACTAATCACCTTAGTGAAA+GGG + chr3.1:49509201-49509220 MS.gene05779:intron 30.0%
AATGCAGTAGTTATGATTCA+TGG + chr3.1:49509009-49509028 MS.gene05779:intron 30.0%
AGAAGTTTCACTACTTTCAT+GGG - chr3.1:49508149-49508168 None:intergenic 30.0%
AGTCTTTACGTTATTACCAA+AGG - chr3.1:49508496-49508515 None:intergenic 30.0%
CACGATGTAAAATCTATAGA+TGG + chr3.1:49509101-49509120 MS.gene05779:intron 30.0%
CATACTTATTTGATGCTCTA+TGG - chr3.1:49510349-49510368 None:intergenic 30.0%
CTATAAATGTATGTTTCGTG+TGG - chr3.1:49511085-49511104 None:intergenic 30.0%
CTTGTCATTATCTCCTTATA+CGG - chr3.1:49510162-49510181 None:intergenic 30.0%
CTTTCATTTGCAATGAACAT+TGG - chr3.1:49508979-49508998 None:intergenic 30.0%
GAAACAACGATTTCCATATT+AGG - chr3.1:49510947-49510966 None:intergenic 30.0%
TAACATATTCAGGATCTGTT+TGG + chr3.1:49509828-49509847 MS.gene05779:intron 30.0%
TAGAAAAGTTGCTGATACTT+GGG + chr3.1:49508298-49508317 MS.gene05779:CDS 30.0%
TATAAGGAGATAATGACAAG+AGG + chr3.1:49510162-49510181 MS.gene05779:intron 30.0%
TATGACTCCCTTTACATATA+TGG + chr3.1:49510468-49510487 MS.gene05779:intron 30.0%
TGTTATTAATAGTTAGGGCA+GGG + chr3.1:49508865-49508884 MS.gene05779:intron 30.0%
TTTCACTTTGTTGATGTTGT+TGG - chr3.1:49508177-49508196 None:intergenic 30.0%
! CATCTATAGATTTTACATCG+TGG - chr3.1:49509103-49509122 None:intergenic 30.0%
! CTTCATTTTCACTTTCTAAG+TGG + chr3.1:49510086-49510105 MS.gene05779:intron 30.0%
! CTTCTGTAGTCTTAATCATA+GGG - chr3.1:49509929-49509948 None:intergenic 30.0%
! GAAATCGTTGTTTCAAAGAT+TGG + chr3.1:49510953-49510972 MS.gene05779:CDS 30.0%
! GGTAAATTTTCTGCAAACAA+GGG + chr3.1:49509246-49509265 MS.gene05779:intron 30.0%
! TAATGTTACTGTTTTCTCAG+TGG + chr3.1:49510295-49510314 MS.gene05779:intron 30.0%
! TGGTAAATTTTCTGCAAACA+AGG + chr3.1:49509245-49509264 MS.gene05779:intron 30.0%
! TGTTCTATAATTGTGGGTTT+TGG - chr3.1:49508811-49508830 None:intergenic 30.0%
! TTGGTTTGAGAAAATAAGGA+AGG + chr3.1:49509847-49509866 MS.gene05779:intron 30.0%
!! CTGTTTGGTTTGAGAAAATA+AGG + chr3.1:49509843-49509862 MS.gene05779:intron 30.0%
!! TCGCCATAACTTTTAAGAAA+TGG - chr3.1:49510539-49510558 None:intergenic 30.0%
AATCTAGCATCTTAGGACTT+GGG - chr3.1:49509790-49509809 None:intergenic 35.0%
AATGGTGAAGAAGAAGAAGA+AGG - chr3.1:49508057-49508076 None:intergenic 35.0%
ACTAATCACCTTAGTGAAAG+GGG + chr3.1:49509202-49509221 MS.gene05779:intron 35.0%
ATGTTCTTCAAGCTCTTTCT+GGG + chr3.1:49508216-49508235 MS.gene05779:CDS 35.0%
ATTCAATTAGCAGCTTGAGT+TGG + chr3.1:49509643-49509662 MS.gene05779:intron 35.0%
CAAGAATTAGTCACTGAATG+AGG + chr3.1:49508531-49508550 MS.gene05779:intron 35.0%
CAGAAGTTTCACTACTTTCA+TGG - chr3.1:49508150-49508169 None:intergenic 35.0%
CCTATGATTAAGACTACAGA+AGG + chr3.1:49509927-49509946 MS.gene05779:intron 35.0%
CTAGAAAAGTTGCTGATACT+TGG + chr3.1:49508297-49508316 MS.gene05779:CDS 35.0%
CTTCTCTATGACAGAAAGAT+GGG - chr3.1:49509558-49509577 None:intergenic 35.0%
CTTGTGTGAGCTGATAAAAT+TGG + chr3.1:49509157-49509176 MS.gene05779:intron 35.0%
GAACTAATCACCTTAGTGAA+AGG + chr3.1:49509200-49509219 MS.gene05779:intron 35.0%
GAAGGTTAGAAATGGAGAAA+TGG - chr3.1:49510783-49510802 None:intergenic 35.0%
GATCTTGCTTTAACATCACA+TGG + chr3.1:49511359-49511378 MS.gene05779:CDS 35.0%
GCTGCTAATTGAATTCACTT+TGG - chr3.1:49509637-49509656 None:intergenic 35.0%
GTCTAATGCAGAACTTTACA+GGG + chr3.1:49511525-49511544 MS.gene05779:CDS 35.0%
GTCTGTTATCTAACATGTGT+CGG - chr3.1:49508746-49508765 None:intergenic 35.0%
GTGAAAATGAAGTTGCAACA+TGG - chr3.1:49510078-49510097 None:intergenic 35.0%
TAAATGTATGTTTCGTGTGG+TGG - chr3.1:49511082-49511101 None:intergenic 35.0%
TAAGATGGCACACATTATGT+TGG + chr3.1:49509225-49509244 MS.gene05779:intron 35.0%
TACAGAAGCGATGTTGAAAA+TGG - chr3.1:49508075-49508094 None:intergenic 35.0%
TCTTCTCTATGACAGAAAGA+TGG - chr3.1:49509559-49509578 None:intergenic 35.0%
TGGCATGAAACAAATGTAAG+AGG + chr3.1:49509029-49509048 MS.gene05779:intron 35.0%
TTAGACGTGTGAATCTCAAT+CGG - chr3.1:49511511-49511530 None:intergenic 35.0%
TTCACGAAAGAAGCAATAAC+CGG + chr3.1:49509990-49510009 MS.gene05779:intron 35.0%
TTCACTTTCTAAGTGGAGTT+GGG + chr3.1:49510093-49510112 MS.gene05779:intron 35.0%
TTGAGTACTTGATCTCTTGA+TGG + chr3.1:49508607-49508626 MS.gene05779:intron 35.0%
TTGTGGAAGATTAGTGATAC+TGG + chr3.1:49510021-49510040 MS.gene05779:intron 35.0%
TTTACTAGTAACAACCCTCT+TGG + chr3.1:49511570-49511589 MS.gene05779:CDS 35.0%
TTTCACTTTCTAAGTGGAGT+TGG + chr3.1:49510092-49510111 MS.gene05779:intron 35.0%
! CCTTCTGTAGTCTTAATCAT+AGG - chr3.1:49509930-49509949 None:intergenic 35.0%
! GTGTTATTAATAGTTAGGGC+AGG + chr3.1:49508864-49508883 MS.gene05779:intron 35.0%
! GTTACTCGCTATGTTTCTAA+TGG + chr3.1:49508332-49508351 MS.gene05779:CDS 35.0%
! TCGTTGTTTCAAAGATTGGT+TGG + chr3.1:49510957-49510976 MS.gene05779:CDS 35.0%
! TTTTGTGGCCAAGTTTATGA+GGG - chr3.1:49510859-49510878 None:intergenic 35.0%
!! ATTGTGGTTATTTTACAGGC+TGG - chr3.1:49509297-49509316 None:intergenic 35.0%
!!! AATGTTTTTGGTCTGAAGGA+AGG - chr3.1:49510801-49510820 None:intergenic 35.0%
!!! GTGAAATGTTTTTGGTCTGA+AGG - chr3.1:49510805-49510824 None:intergenic 35.0%
AACCACCTTCATAGCAACTT+GGG + chr3.1:49511043-49511062 MS.gene05779:CDS 40.0%
AGAGCTGAAAGTTGTGACTT+TGG + chr3.1:49511433-49511452 MS.gene05779:CDS 40.0%
AGCTGAAAGTTGTGACTTTG+GGG + chr3.1:49511435-49511454 MS.gene05779:CDS 40.0%
AGTTTCACTACTTTCATGGG+TGG - chr3.1:49508146-49508165 None:intergenic 40.0%
ATGGGAATGAAGGGATAAGT+TGG - chr3.1:49509540-49509559 None:intergenic 40.0%
CAAACAAGGGATTCTCTTCA+GGG + chr3.1:49509259-49509278 MS.gene05779:intron 40.0%
CAATCTAGCATCTTAGGACT+TGG - chr3.1:49509791-49509810 None:intergenic 40.0%
CGTCTAATGCAGAACTTTAC+AGG + chr3.1:49511524-49511543 MS.gene05779:CDS 40.0%
CTTGGGAGTTAAGACACATT+TGG - chr3.1:49509773-49509792 None:intergenic 40.0%
CTTTGGCAATCTAGCATCTT+AGG - chr3.1:49509797-49509816 None:intergenic 40.0%
GAAAGAGCTTGAAGAACATC+AGG - chr3.1:49508215-49508234 None:intergenic 40.0%
GAAGAAGGTGAATGTGATGA+AGG - chr3.1:49508042-49508061 None:intergenic 40.0%
GACAGAAAGATGGGAATGAA+GGG - chr3.1:49509549-49509568 None:intergenic 40.0%
GAGCTGAAAGTTGTGACTTT+GGG + chr3.1:49511434-49511453 MS.gene05779:CDS 40.0%
GATGTTCTTCAAGCTCTTTC+TGG + chr3.1:49508215-49508234 MS.gene05779:CDS 40.0%
GATTGTACTGCACTATCTTC+TGG + chr3.1:49511334-49511353 MS.gene05779:CDS 40.0%
GGAGAAATGGTCACAAAGAA+AGG - chr3.1:49510770-49510789 None:intergenic 40.0%
GTCATAGGTGTCAACTGAAT+GGG + chr3.1:49508837-49508856 MS.gene05779:intron 40.0%
GTCTGAAGGAAGGTTAGAAA+TGG - chr3.1:49510791-49510810 None:intergenic 40.0%
GTCTGACATCAACAAAACCA+TGG + chr3.1:49510709-49510728 MS.gene05779:CDS 40.0%
GTTCATTAGGCCTTTCATGA+AGG - chr3.1:49511026-49511045 None:intergenic 40.0%
TAGGCCTTTCATGAAGGTTT+CGG - chr3.1:49511020-49511039 None:intergenic 40.0%
TCAAAACTATCAGAGCTGCA+TGG - chr3.1:49510653-49510672 None:intergenic 40.0%
TCAAAATACCACGTGGATCT+TGG + chr3.1:49511184-49511203 MS.gene05779:CDS 40.0%
TCATAGGTGTCAACTGAATG+GGG + chr3.1:49508838-49508857 MS.gene05779:intron 40.0%
TCGAGTATCTTTCTTCCAAG+TGG + chr3.1:49511242-49511261 MS.gene05779:CDS 40.0%
TGACAGAAAGATGGGAATGA+AGG - chr3.1:49509550-49509569 None:intergenic 40.0%
TGCTACTAGGATTGCTTTGT+TGG + chr3.1:49509720-49509739 MS.gene05779:intron 40.0%
TGCTATGAAGGTGGTTCATT+AGG - chr3.1:49511039-49511058 None:intergenic 40.0%
TGTCATAGGTGTCAACTGAA+TGG + chr3.1:49508836-49508855 MS.gene05779:intron 40.0%
TGTGATGAAGGAAGAAACAG+TGG - chr3.1:49508030-49508049 None:intergenic 40.0%
TTACAGCTGGAGATTTCGAA+AGG + chr3.1:49511131-49511150 MS.gene05779:CDS 40.0%
TTAGCCGAAACCTTCATGAA+AGG + chr3.1:49511013-49511032 MS.gene05779:CDS 40.0%
! ACGATCATCTGATGGATCAA+CGG - chr3.1:49511479-49511498 None:intergenic 40.0%
! ATTGCTTTGTTGGAGACTCT+TGG + chr3.1:49509730-49509749 MS.gene05779:intron 40.0%
! CGACATTTTGAGCATTCACT+AGG - chr3.1:49511225-49511244 None:intergenic 40.0%
! CTCTTTTCTTGGTCCGTATA+AGG + chr3.1:49510146-49510165 MS.gene05779:intron 40.0%
! CTTGCATTTCAGTGTTGAAG+CGG + chr3.1:49509075-49509094 MS.gene05779:intron 40.0%
! GTTTTGTGGCCAAGTTTATG+AGG - chr3.1:49510860-49510879 None:intergenic 40.0%
! TGCAACTGCAAAAGCTTTAG+AGG + chr3.1:49511297-49511316 MS.gene05779:CDS 40.0%
! TGTCAGTGCTTCATAGGTTT+TGG - chr3.1:49508636-49508655 None:intergenic 40.0%
!! TCTAACATTGGTGTCACTGT+TGG + chr3.1:49508239-49508258 MS.gene05779:CDS 40.0%
!! TGGAGATTTCGAAAGGCATT+GGG + chr3.1:49511138-49511157 MS.gene05779:CDS 40.0%
!!! AGCTCTGATAGTTTTGAGTC+AGG + chr3.1:49510656-49510675 MS.gene05779:CDS 40.0%
!!! GATCCACGTGGTATTTTGAT+TGG - chr3.1:49511183-49511202 None:intergenic 40.0%
!!! GTATTTTGATTGGCCGTCAA+AGG - chr3.1:49511173-49511192 None:intergenic 40.0%
AAACCTCCAAAGATGCCAAG+AGG - chr3.1:49511588-49511607 None:intergenic 45.0%
AACAACCCTCTTGGCATCTT+TGG + chr3.1:49511579-49511598 MS.gene05779:CDS 45.0%
AACCTCCAAAGATGCCAAGA+GGG - chr3.1:49511587-49511606 None:intergenic 45.0%
AACCTGCAACGATCATCTGA+TGG - chr3.1:49511487-49511506 None:intergenic 45.0%
AATAACCGGAGGTAGTGTTG+TGG + chr3.1:49510004-49510023 MS.gene05779:intron 45.0%
ACCGTTAGGTGACGAAAATG+AGG - chr3.1:49509481-49509500 None:intergenic 45.0%
ACGAAAGAAGCAATAACCGG+AGG + chr3.1:49509993-49510012 MS.gene05779:intron 45.0%
ACTACTTTCATGGGTGGTAG+TGG - chr3.1:49508140-49508159 None:intergenic 45.0%
ATCCATCAGATGATCGTTGC+AGG + chr3.1:49511482-49511501 MS.gene05779:CDS 45.0%
ATCTTCCACAACACTACCTC+CGG - chr3.1:49510012-49510031 None:intergenic 45.0%
CATTTATAGCCTTCTCGACG+AGG + chr3.1:49511096-49511115 MS.gene05779:CDS 45.0%
CCATCTTACCCCTTTCACTA+AGG - chr3.1:49509213-49509232 None:intergenic 45.0%
CCGTTAGGTGACGAAAATGA+GGG - chr3.1:49509480-49509499 None:intergenic 45.0%
CCTTAGTGAAAGGGGTAAGA+TGG + chr3.1:49509210-49509229 MS.gene05779:intron 45.0%
CGAACAATTCCATCCCTTCA+CGG + chr3.1:49510556-49510575 MS.gene05779:CDS 45.0%
CGTTAGGTGACGAAAATGAG+GGG - chr3.1:49509479-49509498 None:intergenic 45.0%
CTACTTTCATGGGTGGTAGT+GGG - chr3.1:49508139-49508158 None:intergenic 45.0%
CTGAAAGTTGTGACTTTGGG+GGG + chr3.1:49511437-49511456 MS.gene05779:CDS 45.0%
CTGTTAGCTAGCATGCTACT+AGG + chr3.1:49509707-49509726 MS.gene05779:intron 45.0%
GAACCACCTTCATAGCAACT+TGG + chr3.1:49511042-49511061 MS.gene05779:CDS 45.0%
GAAGGTTTCGGCTAAGAAAG+AGG - chr3.1:49511008-49511027 None:intergenic 45.0%
GAAGTGGTATGTAGCAGAGT+TGG + chr3.1:49508887-49508906 MS.gene05779:intron 45.0%
GCAAACAAGGGATTCTCTTC+AGG + chr3.1:49509258-49509277 MS.gene05779:intron 45.0%
GCTCTTTCTGGGTCTAACAT+TGG + chr3.1:49508227-49508246 MS.gene05779:CDS 45.0%
GCTGAAAGTTGTGACTTTGG+GGG + chr3.1:49511436-49511455 MS.gene05779:CDS 45.0%
GTGTGCAGATATGTTGCTGT+TGG + chr3.1:49510506-49510525 MS.gene05779:intron 45.0%
GTGTTCCCAAGTTGCTATGA+AGG - chr3.1:49511051-49511070 None:intergenic 45.0%
GTTGTTCACAACACACCACT+TGG - chr3.1:49511260-49511279 None:intergenic 45.0%
TAATAGTTAGGGCAGGGAAG+TGG + chr3.1:49508871-49508890 MS.gene05779:intron 45.0%
TGAAGCCATAGGTGTGAACT+GGG + chr3.1:49508097-49508116 MS.gene05779:CDS 45.0%
TGGGGCTTATTCACCTTTGA+CGG + chr3.1:49511157-49511176 MS.gene05779:CDS 45.0%
TGTACGTGTCAGTGCTTCAT+AGG - chr3.1:49508642-49508661 None:intergenic 45.0%
TGTACTGCACTATCTTCTGG+TGG + chr3.1:49511337-49511356 MS.gene05779:CDS 45.0%
TTCCCAAGTTGCTATGAAGG+TGG - chr3.1:49511048-49511067 None:intergenic 45.0%
TTTCTAAGTGGAGTTGGGTG+AGG + chr3.1:49510098-49510117 MS.gene05779:intron 45.0%
! ACAGGGTGTGTAGTTTTCAG+TGG + chr3.1:49511542-49511561 MS.gene05779:CDS 45.0%
! AGGGATTCTCTTCAGGGTTT+TGG + chr3.1:49509265-49509284 MS.gene05779:intron 45.0%
! CCCTCATTTTCGTCACCTAA+CGG + chr3.1:49509477-49509496 MS.gene05779:intron 45.0%
! CTGGAGATTTCGAAAGGCAT+TGG + chr3.1:49511137-49511156 MS.gene05779:CDS 45.0%
! GCTTCTGTATCTGAAGCCAT+AGG + chr3.1:49508086-49508105 MS.gene05779:CDS 45.0%
!! GATCAAAGGAGCATTACAGC+TGG + chr3.1:49511118-49511137 MS.gene05779:CDS 45.0%
!! GGAGATTTCGAAAGGCATTG+GGG + chr3.1:49511139-49511158 MS.gene05779:CDS 45.0%
!! GTGTCGGTTTCCAACACATT+TGG - chr3.1:49508730-49508749 None:intergenic 45.0%
AAATGTGAGGAGCTCGACCA+TGG - chr3.1:49510729-49510748 None:intergenic 50.0%
AACCCTCTTGGCATCTTTGG+AGG + chr3.1:49511582-49511601 MS.gene05779:CDS 50.0%
ACTGCACGCCCTCATAAACT+TGG + chr3.1:49510848-49510867 MS.gene05779:CDS 50.0%
ATAGCAGCACCAACCGTGAA+GGG - chr3.1:49510572-49510591 None:intergenic 50.0%
CAATTCCATCCCTTCACGGT+TGG + chr3.1:49510560-49510579 MS.gene05779:CDS 50.0%
CGGCCAATCAAAATACCACG+TGG + chr3.1:49511177-49511196 MS.gene05779:CDS 50.0%
CGTGCTTGTCGAGAAATGTG+AGG - chr3.1:49510742-49510761 None:intergenic 50.0%
CTGAAGCCATAGGTGTGAAC+TGG + chr3.1:49508096-49508115 MS.gene05779:CDS 50.0%
GAAGCCATAGGTGTGAACTG+GGG + chr3.1:49508098-49508117 MS.gene05779:CDS 50.0%
TCACAGGTGTCAAGTGACTG+TGG + chr3.1:49508583-49508602 MS.gene05779:intron 50.0%
TCACTAGGCTCTTTGTACCC+TGG - chr3.1:49511210-49511229 None:intergenic 50.0%
TCCTTTGATCCTCGTCGAGA+AGG - chr3.1:49511108-49511127 None:intergenic 50.0%
TGTATGTTTCGTGTGGTGGC+CGG - chr3.1:49511078-49511097 None:intergenic 50.0%
! AAGATTGGTTGGCCAACCGA+TGG + chr3.1:49510968-49510987 MS.gene05779:CDS 50.0%
!! CTTGAGTTGGCATGAAAGCG+TGG + chr3.1:49509656-49509675 MS.gene05779:intron 50.0%
AGGTGTGAACTGGGGAACCA+TGG + chr3.1:49508106-49508125 MS.gene05779:CDS 55.0%
ATACCACGTGGATCTTGGCC+AGG + chr3.1:49511189-49511208 MS.gene05779:CDS 55.0%
CATAGCAGCACCAACCGTGA+AGG - chr3.1:49510573-49510592 None:intergenic 55.0%
GCAACTTGGGAACACCACAC+CGG + chr3.1:49511056-49511075 MS.gene05779:CDS 55.0%
GCCTTCTCGACGAGGATCAA+AGG + chr3.1:49511104-49511123 MS.gene05779:CDS 55.0%
GGTTCCCCAGTTCACACCTA+TGG - chr3.1:49508105-49508124 None:intergenic 55.0%
GGTTGCGTTTGCAGCTCCAT+CGG - chr3.1:49510987-49511006 None:intergenic 55.0%
GTCAGACCTGAGATGCGCTT+CGG - chr3.1:49510696-49510715 None:intergenic 55.0%
TACCACGTGGATCTTGGCCA+GGG + chr3.1:49511190-49511209 MS.gene05779:CDS 55.0%
! AGTTGTGACTTTGGGGGGCT+TGG + chr3.1:49511442-49511461 MS.gene05779:CDS 55.0%
!! TGGTAGTGGGTGTGAAGCCA+TGG - chr3.1:49508126-49508145 None:intergenic 55.0%
AGACCTGAGATGCGCTTCGG+TGG - chr3.1:49510693-49510712 None:intergenic 60.0%
ATGCGCTTCGGTGGACGAGT+TGG - chr3.1:49510684-49510703 None:intergenic 60.0%
CAGCACCAACCGTGAAGGGA+TGG - chr3.1:49510568-49510587 None:intergenic 60.0%
GCGTTTGCAGCTCCATCGGT+TGG - chr3.1:49510983-49511002 None:intergenic 60.0%
TACCCTGGCCAAGATCCACG+TGG - chr3.1:49511195-49511214 None:intergenic 60.0%
CGTCCACCGAAGCGCATCTC+AGG + chr3.1:49510687-49510706 MS.gene05779:CDS 65.0%
GTTTCGTGTGGTGGCCGGTG+TGG - chr3.1:49511073-49511092 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 49508023 49511609 49508023 ID=MS.gene05779
chr3.1 mRNA 49508023 49511609 49508023 ID=MS.gene05779.t1;Parent=MS.gene05779
chr3.1 exon 49508023 49508366 49508023 ID=MS.gene05779.t1.exon1;Parent=MS.gene05779.t1
chr3.1 CDS 49508023 49508366 49508023 ID=cds.MS.gene05779.t1;Parent=MS.gene05779.t1
chr3.1 exon 49510514 49511609 49510514 ID=MS.gene05779.t1.exon2;Parent=MS.gene05779.t1
chr3.1 CDS 49510514 49511609 49510514 ID=cds.MS.gene05779.t1;Parent=MS.gene05779.t1
Gene Sequence

>MS.gene05779

ATGTCCACTGTTTCTTCCTTCATCACATTCACCTTCTTCTTCTTCTTCACCATTTTCAACATCGCTTCTGTATCTGAAGCCATAGGTGTGAACTGGGGAACCATGGCTTCACACCCACTACCACCCATGAAAGTAGTGAAACTTCTGAAGTCCAACAACATCAACAAAGTGAAACTGTTTGATGCAAAACCTGATGTTCTTCAAGCTCTTTCTGGGTCTAACATTGGTGTCACTGTTGGTATTCCAAATGTTTTGCTCAAAAGTTTGAATTCTTCTAGAAAAGTTGCTGATACTTGGGTTCATGATAATGTTACTCGCTATGTTTCTAATGGTGCTAAAATTGAGTATGTCACTTTTCTTTCTTCCTCTTTTAATTCTATATTTTCTTATTTTATATTATTTATTTAATTTTTAATACATTGTTGGTTTTTATTTTTTACTTTTTTTTCTTCTCATATTTGTTGTTATGTCCTTTGGTAATAACGTAAAGACTCAGTAAAGAGTGAAACAAGAATTAGTCACTGAATGAGGAAGTTTTATAGATTATAGAATAAATAATGTCACAGGTGTCAAGTGACTGTGGTTTGAGTACTTGATCTCTTGATGGTTGCCAAAACCTATGAAGCACTGACACGTACACGCACACTAGACTAACATGTGTCGTCAACAATAATAATTTAGGAAAATGAATTAATAAAATTTAACCAAATGTGTTGGAAACCGACACATGTTAGATAACAGACAACAGACACACTTTTGATCAGAAGTGTCGTGCGTGCTAGATGCCAAAACCCACAATTATAGAACAAACAATGTCATAGGTGTCAACTGAATGGGGTTTGTGTTATTAATAGTTAGGGCAGGGAAGTGGTATGTAGCAGAGTTGGAATGTGTCAAAGATAAAATGTAGCTACTGTGATAACTATGAGATAAAAGAACTAAAATTAGCTAAGCCAATGTTCATTGCAAATGAAAGCAGTGAATCAAATGCAGTAGTTATGATTCATGGCATGAAACAAATGTAAGAGGACTGCAATTGTTAGAATAGAATGCTTGCATTTCAGTGTTGAAGCGGCTCCACGATGTAAAATCTATAGATGGAATTTGATTTTAAAACAAATCATTTTTTTCTAACTTGTGTGAGCTGATAAAATTGGAAAATCAAATCAGTTATAAAGAACTAATCACCTTAGTGAAAGGGGTAAGATGGCACACATTATGTTGGTAAATTTTCTGCAAACAAGGGATTCTCTTCAGGGTTTTGGTATCTTCCAGCCTGTAAAATAACCACAATTTTTAACACAATATTCTTTCAAATGCAATAACAAAAGAAACTTGATAAAAAAAAAGTAGCAGAAGAAAACAATTATAAACTAAATAGTGTAAAAGTTCTATAGAAGTTTCATCTCATAAGGTAGAGAAGTTTAATTATATTGTTTTAATATCGAGAATACCCCTCATTTTCGTCACCTAACGGTAAGAATTATTTATGGATTTTGCAATGACATAAAACACCAACTTATCCCTTCATTCCCATCTTTCTGTCATAGAGAAGAAGTTTATCCAAAATATTAAAATAAGATCCAAAGTGAATATTTTTTTTTGAAAAAACCAAAGTGAATTCAATTAGCAGCTTGAGTTGGCATGAAAGCGTGGAAATCTTGACTCATGATAAGATACATCACTGTTAGCTAGCATGCTACTAGGATTGCTTTGTTGGAGACTCTTGGTATACTATGTTTGCATTCCAAATGTGTCTTAACTCCCAAGTCCTAAGATGCTAGATTGCCAAAGAAATTATCAGCTAACATATTCAGGATCTGTTTGGTTTGAGAAAATAAGGAAGGAAATAATATGACAATAAAAGCTAATCATGAAACAGGATAGTTATACAAAATCAAATCCCTATGATTAAGACTACAGAAGGTGTGTGTTGTTTTTCAATAATAAAGATGAATCGATGGCTGTTCACGAAAGAAGCAATAACCGGAGGTAGTGTTGTGGAAGATTAGTGATACTGGTGTACATGATTTGTTACGATGACACTTTCAGCCATGTTGCAACTTCATTTTCACTTTCTAAGTGGAGTTGGGTGAGGTATTTCAACAACAAATTTGTCAAAACTCTTTTCTTGGTCCGTATAAGGAGATAATGACAAGAGGAGTTCCTAAGATATGTTCAACTAAATTTGCTTATATTTTGAATACACATATTTTAGATGAAAATTTAACTTGGTCATTTGTTCTTTTAAGAGTTGATTTTTGAACAGAATTAATGTTACTGTTTTCTCAGTGGTATATGCTAGATCAGATAAATTCACTAGCCATAGAGCATCAAATAAGTATGCTTTCTCAATGTTTTAATAAGCTAAAATTTGAACATGTAATTGAAACTTTTGAAAAAATTTACTCTTAGTTGAAAAAATATGGATATGTATTTCTGAAGTATGACTCCCTTTACATATATGGTTTTAAATTTAACTTGTGTGCAGATATGTTGCTGTTGGTGATGAACCATTTCTTAAAAGTTATGGCGAACAATTCCATCCCTTCACGGTTGGTGCTGCTATGAACATTCAAGCTGCTTTAAAAAAAGCAAAATTGGACAACAAAGTAAAAGTTGTAGTTCCATGCAGCTCTGATAGTTTTGAGTCAGGATCCAACTCGTCCACCGAAGCGCATCTCAGGTCTGACATCAACAAAACCATGGTCGAGCTCCTCACATTTCTCGACAAGCACGAATCACCTTTCTTTGTGACCATTTCTCCATTTCTAACCTTCCTTCAGACCAAAAACATTTCACTTGATTTTTCACTCTTCAAAGAAACTGCACGCCCTCATAAACTTGGCCACAAAACATACAAAAATAGCTTTGATATGAGCTACGATACAGTGATCACTGTTTTATCAAAAGTAGGATTTCCTAATATGGAAATCGTTGTTTCAAAGATTGGTTGGCCAACCGATGGAGCTGCAAACGCAACCTCTTTCTTAGCCGAAACCTTCATGAAAGGCCTAATGAACCACCTTCATAGCAACTTGGGAACACCACACCGGCCACCACACGAAACATACATTTATAGCCTTCTCGACGAGGATCAAAGGAGCATTACAGCTGGAGATTTCGAAAGGCATTGGGGCTTATTCACCTTTGACGGCCAATCAAAATACCACGTGGATCTTGGCCAGGGTACAAAGAGCCTAGTGAATGCTCAAAATGTCGAGTATCTTTCTTCCAAGTGGTGTGTTGTGAACAACAATGAAGACTTGTCTAATGCAACTGCAAAAGCTTTAGAGGCTTGTGCAAACGCTGATTGTACTGCACTATCTTCTGGTGGATCTTGCTTTAACATCACATGGCCTAGTAATATATCATATGCTTTTAATAGTTATTATCAGGAGCATGATCAAAGAGCTGAAAGTTGTGACTTTGGGGGGCTTGGCTTAATCACAACCGTTGATCCATCAGATGATCGTTGCAGGTTTCCGATTGAGATTCACACGTCTAATGCAGAACTTTACAGGGTGTGTAGTTTTCAGTGGTTGATTTTACTAGTAACAACCCTCTTGGCATCTTTGGAGGTTTGA
Protein sequence

>MS.gene05779.t1

MSTVSSFITFTFFFFFTIFNIASVSEAIGVNWGTMASHPLPPMKVVKLLKSNNINKVKLFDAKPDVLQALSGSNIGVTVGIPNVLLKSLNSSRKVADTWVHDNVTRYVSNGAKIEYVAVGDEPFLKSYGEQFHPFTVGAAMNIQAALKKAKLDNKVKVVVPCSSDSFESGSNSSTEAHLRSDINKTMVELLTFLDKHESPFFVTISPFLTFLQTKNISLDFSLFKETARPHKLGHKTYKNSFDMSYDTVITVLSKVGFPNMEIVVSKIGWPTDGAANATSFLAETFMKGLMNHLHSNLGTPHRPPHETYIYSLLDEDQRSITAGDFERHWGLFTFDGQSKYHVDLGQGTKSLVNAQNVEYLSSKWCVVNNNEDLSNATAKALEACANADCTALSSGGSCFNITWPSNISYAFNSYYQEHDQRAESCDFGGLGLITTVDPSDDRCRFPIEIHTSNAELYRVCSFQWLILLVTTLLASLEV