Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057878.t1 | XP_003607199.1 | 99.5 | 190 | 1 | 0 | 1 | 190 | 98 | 287 | 2.20E-101 | 378.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057878.t1 | Q42564 | 77.0 | 191 | 43 | 1 | 1 | 190 | 97 | 287 | 2.0e-79 | 296.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057878.t1 | G7JNF5 | 99.5 | 190 | 1 | 0 | 1 | 190 | 98 | 287 | 1.6e-101 | 378.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057876 | MS.gene057878 | 0.840261 | 9.68E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057878.t1 | MTR_4g073410 | 99.474 | 190 | 1 | 0 | 1 | 190 | 98 | 287 | 3.49e-137 | 385 |
| MS.gene057878.t1 | MTR_5g022510 | 69.149 | 188 | 53 | 1 | 1 | 188 | 72 | 254 | 1.85e-91 | 268 |
| MS.gene057878.t1 | MTR_5g022510 | 69.149 | 188 | 53 | 1 | 1 | 188 | 97 | 279 | 7.32e-91 | 267 |
| MS.gene057878.t1 | MTR_4g061140 | 66.667 | 150 | 49 | 1 | 1 | 149 | 65 | 214 | 1.42e-64 | 198 |
| MS.gene057878.t1 | MTR_4g061140 | 66.667 | 150 | 49 | 1 | 1 | 149 | 99 | 248 | 1.92e-64 | 199 |
| MS.gene057878.t1 | MTR_4g061140 | 66.216 | 148 | 49 | 1 | 1 | 147 | 99 | 246 | 5.54e-63 | 195 |
| MS.gene057878.t1 | MTR_3g088160 | 52.299 | 174 | 60 | 5 | 1 | 151 | 188 | 361 | 2.58e-47 | 159 |
| MS.gene057878.t1 | MTR_3g088160 | 52.299 | 174 | 60 | 5 | 1 | 151 | 188 | 361 | 6.32e-47 | 159 |
| MS.gene057878.t1 | MTR_5g008440 | 54.054 | 148 | 53 | 2 | 1 | 147 | 48 | 181 | 5.22e-45 | 147 |
| MS.gene057878.t1 | MTR_3g107060 | 37.975 | 158 | 82 | 3 | 1 | 152 | 172 | 319 | 4.88e-28 | 107 |
| MS.gene057878.t1 | MTR_3g072190 | 32.143 | 168 | 78 | 5 | 11 | 146 | 70 | 233 | 1.09e-13 | 67.8 |
| MS.gene057878.t1 | MTR_3g072190 | 32.143 | 168 | 78 | 5 | 11 | 146 | 137 | 300 | 1.24e-13 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057878.t1 | AT4G35000 | 76.963 | 191 | 43 | 1 | 1 | 190 | 97 | 287 | 7.89e-96 | 280 |
| MS.gene057878.t1 | AT4G35970 | 61.579 | 190 | 67 | 2 | 1 | 190 | 96 | 279 | 1.25e-77 | 233 |
| MS.gene057878.t1 | AT3G09640 | 67.114 | 149 | 49 | 0 | 1 | 149 | 100 | 248 | 8.25e-66 | 202 |
| MS.gene057878.t1 | AT3G09640 | 67.114 | 149 | 49 | 0 | 1 | 149 | 100 | 248 | 8.25e-66 | 202 |
| MS.gene057878.t1 | AT1G07890 | 66.667 | 150 | 49 | 1 | 1 | 149 | 99 | 248 | 1.10e-63 | 197 |
| MS.gene057878.t1 | AT1G07890 | 66.667 | 150 | 49 | 1 | 1 | 149 | 99 | 248 | 1.10e-63 | 197 |
| MS.gene057878.t1 | AT1G07890 | 66.667 | 150 | 49 | 1 | 1 | 149 | 99 | 248 | 1.10e-63 | 197 |
| MS.gene057878.t1 | AT1G07890 | 66.667 | 150 | 49 | 1 | 1 | 149 | 99 | 248 | 1.10e-63 | 197 |
| MS.gene057878.t1 | AT1G07890 | 66.667 | 150 | 49 | 1 | 1 | 149 | 99 | 248 | 1.10e-63 | 197 |
| MS.gene057878.t1 | AT1G07890 | 66.667 | 150 | 49 | 1 | 1 | 149 | 99 | 248 | 1.10e-63 | 197 |
| MS.gene057878.t1 | AT1G07890 | 66.667 | 150 | 49 | 1 | 1 | 149 | 99 | 248 | 1.10e-63 | 197 |
| MS.gene057878.t1 | AT1G07890 | 65.772 | 149 | 50 | 1 | 1 | 148 | 99 | 247 | 1.16e-62 | 194 |
| MS.gene057878.t1 | AT4G35970 | 66.929 | 127 | 41 | 1 | 1 | 127 | 96 | 221 | 3.68e-56 | 177 |
| MS.gene057878.t1 | AT4G08390 | 50.595 | 168 | 62 | 3 | 1 | 147 | 194 | 361 | 6.37e-46 | 155 |
| MS.gene057878.t1 | AT4G08390 | 50.595 | 168 | 62 | 3 | 1 | 147 | 194 | 361 | 6.37e-46 | 155 |
| MS.gene057878.t1 | AT4G08390 | 50.595 | 168 | 62 | 3 | 1 | 147 | 194 | 361 | 6.37e-46 | 155 |
| MS.gene057878.t1 | AT4G08390 | 50.595 | 168 | 62 | 3 | 1 | 147 | 193 | 360 | 7.01e-46 | 155 |
| MS.gene057878.t1 | AT1G77490 | 51.786 | 168 | 60 | 3 | 1 | 147 | 173 | 340 | 1.50e-45 | 155 |
| MS.gene057878.t1 | AT1G77490 | 51.786 | 168 | 60 | 3 | 1 | 147 | 173 | 340 | 1.72e-45 | 155 |
| MS.gene057878.t1 | AT4G08390 | 44.643 | 168 | 46 | 4 | 1 | 147 | 194 | 335 | 1.76e-35 | 127 |
| MS.gene057878.t1 | AT4G32320 | 39.869 | 153 | 76 | 3 | 1 | 147 | 181 | 323 | 4.61e-28 | 107 |
| MS.gene057878.t1 | AT2G24800 | 31.551 | 187 | 86 | 4 | 1 | 147 | 128 | 312 | 9.73e-16 | 74.3 |
| MS.gene057878.t1 | AT3G28200 | 31.792 | 173 | 76 | 4 | 11 | 147 | 133 | 299 | 3.70e-15 | 72.4 |
| MS.gene057878.t1 | AT4G31760 | 30.645 | 186 | 88 | 5 | 1 | 147 | 126 | 309 | 5.97e-15 | 72.0 |
Find 56 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGTTGCAGTTGAGGTTAC+TGG | 0.120093 | 4.4:-35303397 | MS.gene057878:CDS |
| TCCAACAGACAGGGCTTTAT+TGG | 0.192934 | 4.4:-35302580 | MS.gene057878:CDS |
| CCTTTGTGCTTCCAGCTTGC+GGG | 0.246744 | 4.4:-35303421 | None:intergenic |
| TGTCAATATCAGGATACTTT+TGG | 0.287568 | 4.4:-35302631 | MS.gene057878:intron |
| TCAACATAACGGTGAAATTC+AGG | 0.298735 | 4.4:+35302552 | None:intergenic |
| GTACTGGCACAAAGCGCTTT+TGG | 0.320365 | 4.4:-35301793 | MS.gene057878:CDS |
| TGCACAACATACCCTTCTTC+CGG | 0.335633 | 4.4:+35303351 | None:intergenic |
| TTGTTGCAGTTGAGGTTACT+GGG | 0.345113 | 4.4:-35303396 | MS.gene057878:CDS |
| AAAGATATTGTTGCACTGTC+TGG | 0.377559 | 4.4:-35302980 | MS.gene057878:CDS |
| CCCACAGTCAACTTTGTTCC+CGG | 0.379705 | 4.4:-35303370 | MS.gene057878:CDS |
| GCACAACATACCCTTCTTCC+GGG | 0.398155 | 4.4:+35303352 | None:intergenic |
| CATAAGAAACTTTCAGAGCT+TGG | 0.401756 | 4.4:-35301859 | MS.gene057878:CDS |
| CCATCAAACCCTGATCTCTC+TGG | 0.416214 | 4.4:+35302853 | None:intergenic |
| GGAGCAGTTGCCTTTGAGCT+TGG | 0.421255 | 4.4:+35301829 | None:intergenic |
| CCAGAGAGATCAGGGTTTGA+TGG | 0.443075 | 4.4:-35302853 | MS.gene057878:CDS |
| ATCAGGAAGCCGCCCATCTC+TGG | 0.443990 | 4.4:+35303243 | None:intergenic |
| TCAACTTTGTTCCCGGAAGA+AGG | 0.446728 | 4.4:-35303363 | MS.gene057878:CDS |
| AAGATATTGTTGCACTGTCT+GGG | 0.448168 | 4.4:-35302979 | MS.gene057878:CDS |
| AGAGCACATCCAGAGAGATC+AGG | 0.450497 | 4.4:-35302862 | MS.gene057878:CDS |
| TCCAATAAAGCCCTGTCTGT+TGG | 0.463470 | 4.4:+35302579 | None:intergenic |
| TGGCTTTGCGCCAAGCTCAA+AGG | 0.464700 | 4.4:-35301839 | MS.gene057878:CDS |
| GCCAGTACGGTTGCATCCAC+AGG | 0.465545 | 4.4:+35301808 | None:intergenic |
| AACACACCTTGTTTAGCATC+AGG | 0.470481 | 4.4:+35303226 | None:intergenic |
| TGCTTAAACTTCCAACAGAC+AGG | 0.474376 | 4.4:-35302590 | MS.gene057878:CDS |
| GATCAGGGTTTGATGGCCCT+TGG | 0.481908 | 4.4:-35302846 | MS.gene057878:CDS |
| GCCGCTGCAGTGGTGATCCT+CGG | 0.490613 | 4.4:-35301760 | MS.gene057878:CDS |
| TCAAAAGTATGTACCAGAGA+TGG | 0.493165 | 4.4:-35303256 | MS.gene057878:CDS |
| TCCTGTGGATGCAACCGTAC+TGG | 0.493313 | 4.4:-35301809 | MS.gene057878:CDS |
| CTCAAAGGCAACTGCTCCTG+TGG | 0.511925 | 4.4:-35301824 | MS.gene057878:CDS |
| TTCAGAGGGTCCTCTGTCCA+AGG | 0.512263 | 4.4:+35302829 | None:intergenic |
| TGCGGGTGTTGTTGCAGTTG+AGG | 0.524490 | 4.4:-35303404 | MS.gene057878:CDS |
| TTGTATGAAACTCACAAAAG+AGG | 0.531958 | 4.4:-35301733 | MS.gene057878:CDS |
| GAGCACATCCAGAGAGATCA+GGG | 0.542419 | 4.4:-35302861 | MS.gene057878:CDS |
| CAAAAGTATGTACCAGAGAT+GGG | 0.549843 | 4.4:-35303255 | MS.gene057878:CDS |
| GTTTGATGGCCCTTGGACAG+AGG | 0.551642 | 4.4:-35302839 | MS.gene057878:CDS |
| TGTATGAAACTCACAAAAGA+GGG | 0.552331 | 4.4:-35301732 | MS.gene057878:CDS |
| CAACTTTGTTCCCGGAAGAA+GGG | 0.554225 | 4.4:-35303362 | MS.gene057878:intron |
| TATGAGTTATCAAACTTCAG+AGG | 0.559558 | 4.4:+35302814 | None:intergenic |
| AAAAGCGCTTTGTGCCAGTA+CGG | 0.571570 | 4.4:+35301795 | None:intergenic |
| CGGCTTCCTGATGCTAAACA+AGG | 0.575592 | 4.4:-35303232 | MS.gene057878:intron |
| ATGAGTTATCAAACTTCAGA+GGG | 0.599283 | 4.4:+35302815 | None:intergenic |
| TCGCATACAGCTCAACATAA+CGG | 0.606359 | 4.4:+35302541 | None:intergenic |
| ACTGTCTGGGGCACATACGC+TGG | 0.608033 | 4.4:-35302966 | MS.gene057878:intron |
| CCATACGATAAAAGATATCA+CGG | 0.612766 | 4.4:+35303014 | None:intergenic |
| CCGGGAACAAAGTTGACTGT+GGG | 0.622160 | 4.4:+35303370 | None:intergenic |
| TCAGAGGGTCCTCTGTCCAA+GGG | 0.622882 | 4.4:+35302830 | None:intergenic |
| ACCGAGGATCACCACTGCAG+CGG | 0.626779 | 4.4:+35301759 | None:intergenic |
| TCCGGGAACAAAGTTGACTG+TGG | 0.630776 | 4.4:+35303369 | None:intergenic |
| AGATATTGTTGCACTGTCTG+GGG | 0.639389 | 4.4:-35302978 | MS.gene057878:CDS |
| TTATGTTGAGCTGTATGCGA+AGG | 0.641815 | 4.4:-35302538 | MS.gene057878:intron |
| TGTTGCAGTTGAGGTTACTG+GGG | 0.642422 | 4.4:-35303395 | MS.gene057878:CDS |
| AGTTGTAGCTGCCGCTGCAG+TGG | 0.652303 | 4.4:-35301770 | MS.gene057878:CDS |
| GCTTAAACTTCCAACAGACA+GGG | 0.655046 | 4.4:-35302589 | MS.gene057878:CDS |
| GTTGCAGTTGAGGTTACTGG+GGG | 0.656351 | 4.4:-35303394 | MS.gene057878:CDS |
| GAGTTTCATACAAGTAACCG+AGG | 0.700364 | 4.4:+35301743 | None:intergenic |
| AAGTATGTACCAGAGATGGG+CGG | 0.726843 | 4.4:-35303252 | MS.gene057878:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATAAAAATAAAATAT+TGG | + | chr4.4:35302429-35302448 | None:intergenic | 0.0% |
| !! | AAAAATAAAAATAAAATATT+GGG | + | chr4.4:35302428-35302447 | None:intergenic | 0.0% |
| !!! | TTATTTTTTAATTTTTATTT+TGG | - | chr4.4:35302440-35302459 | MS.gene057878:intron | 0.0% |
| !! | AATAATAAAAAGATATAGAA+AGG | + | chr4.4:35302199-35302218 | None:intergenic | 10.0% |
| !! | GAAAATAAAATAAGAATTTA+TGG | + | chr4.4:35302236-35302255 | None:intergenic | 10.0% |
| !! | ATAACTAATATTGTAACGAA+AGG | + | chr4.4:35301810-35301829 | None:intergenic | 20.0% |
| !! | ATATTGACAAAGATATTTAG+GGG | + | chr4.4:35302490-35302509 | None:intergenic | 20.0% |
| !! | GATATTGACAAAGATATTTA+GGG | + | chr4.4:35302491-35302510 | None:intergenic | 20.0% |
| !! | TAAATATCTTTGTCAATATC+AGG | - | chr4.4:35302491-35302510 | MS.gene057878:intron | 20.0% |
| !! | TATAAACATGTCAATGATAT+TGG | - | chr4.4:35302079-35302098 | MS.gene057878:intron | 20.0% |
| !! | TGATATTGACAAAGATATTT+AGG | + | chr4.4:35302492-35302511 | None:intergenic | 20.0% |
| !!! | AGATTCATTTAATTTAACGA+TGG | + | chr4.4:35303164-35303183 | None:intergenic | 20.0% |
| !!! | ATTTTATTTTCTGTGTTTCA+AGG | - | chr4.4:35302245-35302264 | MS.gene057878:intron | 20.0% |
| !!! | TACGTTATTTAGTTTAAATG+TGG | + | chr4.4:35303015-35303034 | None:intergenic | 20.0% |
| !!! | TTTTATTTTCTGTGTTTCAA+GGG | - | chr4.4:35302246-35302265 | MS.gene057878:intron | 20.0% |
| ! | ATATTAAGTAAGAAAGCTGT+TGG | + | chr4.4:35302905-35302924 | None:intergenic | 25.0% |
| ! | TCATCAAAGAAAATCAATAG+TGG | - | chr4.4:35303106-35303125 | MS.gene057878:intron | 25.0% |
| ! | TGCTATTGAAAAACCATATT+TGG | + | chr4.4:35302691-35302710 | None:intergenic | 25.0% |
| !! | CTTAATTTTGTTGATGTGTA+GGG | + | chr4.4:35302026-35302045 | None:intergenic | 25.0% |
| !! | TATTGGATCAATCTTTTGAT+TGG | - | chr4.4:35302747-35302766 | MS.gene057878:intron | 25.0% |
| !! | TCTTAATTTTGTTGATGTGT+AGG | + | chr4.4:35302027-35302046 | None:intergenic | 25.0% |
| !! | TGTTTCTAAATTATTGTCAG+TGG | - | chr4.4:35301925-35301944 | MS.gene057878:intron | 25.0% |
| !!! | TTTTTAGCAAAACAGAAACT+TGG | + | chr4.4:35303085-35303104 | None:intergenic | 25.0% |
| AACATGTCAATGATATTGGT+AGG | - | chr4.4:35302083-35302102 | MS.gene057878:intron | 30.0% | |
| AATTAGAGAATGACAAGTTC+AGG | + | chr4.4:35301838-35301857 | None:intergenic | 30.0% | |
| ACCTTAATAGTTGTAACAGA+AGG | + | chr4.4:35302985-35303004 | None:intergenic | 30.0% | |
| AGAAAAGAAAATCCTTTCAC+AGG | + | chr4.4:35301996-35302015 | None:intergenic | 30.0% | |
| ATGAGTTATCAAACTTCAGA+GGG | + | chr4.4:35302320-35302339 | None:intergenic | 30.0% | |
| ATTGAAAAACCATATTTGGC+AGG | + | chr4.4:35302687-35302706 | None:intergenic | 30.0% | |
| ATTTCCTACATGTGCTAATT+GGG | - | chr4.4:35302871-35302890 | MS.gene057878:intron | 30.0% | |
| CCATACGATAAAAGATATCA+CGG | + | chr4.4:35302121-35302140 | None:intergenic | 30.0% | |
| CTCTTGTTGCATTTGTTTAT+TGG | - | chr4.4:35302730-35302749 | MS.gene057878:intron | 30.0% | |
| TATGAGTTATCAAACTTCAG+AGG | + | chr4.4:35302321-35302340 | None:intergenic | 30.0% | |
| TCCTTCTGTTACAACTATTA+AGG | - | chr4.4:35302981-35303000 | MS.gene057878:CDS | 30.0% | |
| TGTATGAAACTCACAAAAGA+GGG | - | chr4.4:35303400-35303419 | MS.gene057878:CDS | 30.0% | |
| TTGTATGAAACTCACAAAAG+AGG | - | chr4.4:35303399-35303418 | MS.gene057878:CDS | 30.0% | |
| ! | AAACTTGGCATGAATGTTTT+GGG | + | chr4.4:35303070-35303089 | None:intergenic | 30.0% |
| ! | AAATGCAACAAGAGTACAAA+TGG | + | chr4.4:35302724-35302743 | None:intergenic | 30.0% |
| ! | CGTGATATCTTTTATCGTAT+GGG | - | chr4.4:35302119-35302138 | MS.gene057878:intron | 30.0% |
| ! | TATGAAATCAGTTTTCAGCA+GGG | + | chr4.4:35302658-35302677 | None:intergenic | 30.0% |
| ! | TCTAATTTTCTGTGTCATGT+AGG | - | chr4.4:35301851-35301870 | MS.gene057878:CDS | 30.0% |
| ! | TGTCAATATCAGGATACTTT+TGG | - | chr4.4:35302501-35302520 | MS.gene057878:intron | 30.0% |
| ! | TTATGAAATCAGTTTTCAGC+AGG | + | chr4.4:35302659-35302678 | None:intergenic | 30.0% |
| !! | CATTAAGTAGGTTGATTAGT+AGG | - | chr4.4:35302779-35302798 | MS.gene057878:intron | 30.0% |
| !! | TTTATTATTTGCTGTGATCG+CGG | - | chr4.4:35302210-35302229 | MS.gene057878:intron | 30.0% |
| !!! | AGTTTTTTTGCTTTACTACG+AGG | - | chr4.4:35302376-35302395 | MS.gene057878:intron | 30.0% |
| AAAGATATTGTTGCACTGTC+TGG | - | chr4.4:35302152-35302171 | MS.gene057878:intron | 35.0% | |
| AACATTGTGATAATCGCAGA+TGG | + | chr4.4:35302844-35302863 | None:intergenic | 35.0% | |
| AAGATATTGTTGCACTGTCT+GGG | - | chr4.4:35302153-35302172 | MS.gene057878:intron | 35.0% | |
| AGACCAACGTATTAAGTAGT+TGG | + | chr4.4:35302956-35302975 | None:intergenic | 35.0% | |
| AGATATGAGCTCTTTCTACT+TGG | - | chr4.4:35302930-35302949 | MS.gene057878:intron | 35.0% | |
| CATAAGAAACTTTCAGAGCT+TGG | - | chr4.4:35303273-35303292 | MS.gene057878:intron | 35.0% | |
| GATTTCCTACATGTGCTAAT+TGG | - | chr4.4:35302870-35302889 | MS.gene057878:intron | 35.0% | |
| TACAACAGTTTCGTTCACTT+GGG | - | chr4.4:35301948-35301967 | MS.gene057878:intron | 35.0% | |
| TCAACATAACGGTGAAATTC+AGG | + | chr4.4:35302583-35302602 | None:intergenic | 35.0% | |
| TCTAATTCTAATTCTCCCTC+TGG | - | chr4.4:35303211-35303230 | MS.gene057878:intron | 35.0% | |
| TGGAACTCATTGCATTAAGT+AGG | - | chr4.4:35302767-35302786 | MS.gene057878:intron | 35.0% | |
| ! | ATAAAGTGTCCTGCCAAATA+TGG | - | chr4.4:35302675-35302694 | MS.gene057878:intron | 35.0% |
| ! | CAAAAGTATGTACCAGAGAT+GGG | - | chr4.4:35301877-35301896 | MS.gene057878:CDS | 35.0% |
| ! | CCGTGATATCTTTTATCGTA+TGG | - | chr4.4:35302118-35302137 | MS.gene057878:intron | 35.0% |
| ! | GAAACTTGGCATGAATGTTT+TGG | + | chr4.4:35303071-35303090 | None:intergenic | 35.0% |
| ! | TCAAAAGTATGTACCAGAGA+TGG | - | chr4.4:35301876-35301895 | MS.gene057878:CDS | 35.0% |
| AGATATTGTTGCACTGTCTG+GGG | - | chr4.4:35302154-35302173 | MS.gene057878:intron | 40.0% | |
| AGCTGTATGCGAAGGTAATT+GGG | - | chr4.4:35302602-35302621 | MS.gene057878:CDS | 40.0% | |
| GAGTTTCATACAAGTAACCG+AGG | + | chr4.4:35303392-35303411 | None:intergenic | 40.0% | |
| GCTTAAACTTCCAACAGACA+GGG | - | chr4.4:35302543-35302562 | MS.gene057878:CDS | 40.0% | |
| GTACAACAGTTTCGTTCACT+TGG | - | chr4.4:35301947-35301966 | MS.gene057878:intron | 40.0% | |
| TCGCATACAGCTCAACATAA+CGG | + | chr4.4:35302594-35302613 | None:intergenic | 40.0% | |
| TGCTTAAACTTCCAACAGAC+AGG | - | chr4.4:35302542-35302561 | MS.gene057878:CDS | 40.0% | |
| TGGCCAACTACTTAATACGT+TGG | - | chr4.4:35302950-35302969 | MS.gene057878:intron | 40.0% | |
| TTATGTTGAGCTGTATGCGA+AGG | - | chr4.4:35302594-35302613 | MS.gene057878:CDS | 40.0% | |
| TTGTTGCAGTTGAGGTTACT+GGG | - | chr4.4:35301736-35301755 | MS.gene057878:CDS | 40.0% | |
| ! | AACACACCTTGTTTAGCATC+AGG | + | chr4.4:35301909-35301928 | None:intergenic | 40.0% |
| !! | TTGGCATGAATGTTTTGGGT+AGG | + | chr4.4:35303066-35303085 | None:intergenic | 40.0% |
| AAGTATGTACCAGAGATGGG+CGG | - | chr4.4:35301880-35301899 | MS.gene057878:CDS | 45.0% | |
| ATTCTAATTCTCCCTCTGGC+AGG | - | chr4.4:35303215-35303234 | MS.gene057878:intron | 45.0% | |
| CAACTTTGTTCCCGGAAGAA+GGG | - | chr4.4:35301770-35301789 | MS.gene057878:CDS | 45.0% | |
| CTCCAAAGCACAATGCTTAC+CGG | + | chr4.4:35302811-35302830 | None:intergenic | 45.0% | |
| GAAAATCCTTTCACAGGCAG+TGG | + | chr4.4:35301990-35302009 | None:intergenic | 45.0% | |
| GAGCTGTATGCGAAGGTAAT+TGG | - | chr4.4:35302601-35302620 | MS.gene057878:CDS | 45.0% | |
| GTTGATTAGTAGGTCCTTCC+CGG | - | chr4.4:35302789-35302808 | MS.gene057878:intron | 45.0% | |
| GTTGTTGCAGTTGAGGTTAC+TGG | - | chr4.4:35301735-35301754 | MS.gene057878:CDS | 45.0% | |
| TCAACTTTGTTCCCGGAAGA+AGG | - | chr4.4:35301769-35301788 | MS.gene057878:CDS | 45.0% | |
| TCCAAAGCACAATGCTTACC+GGG | + | chr4.4:35302810-35302829 | None:intergenic | 45.0% | |
| TCCAATAAAGCCCTGTCTGT+TGG | + | chr4.4:35302556-35302575 | None:intergenic | 45.0% | |
| TCCACCCAATTAGCACATGT+AGG | + | chr4.4:35302878-35302897 | None:intergenic | 45.0% | |
| TCCTACATGTGCTAATTGGG+TGG | - | chr4.4:35302874-35302893 | MS.gene057878:intron | 45.0% | |
| TGCACAACATACCCTTCTTC+CGG | + | chr4.4:35301784-35301803 | None:intergenic | 45.0% | |
| TGTTGCAGTTGAGGTTACTG+GGG | - | chr4.4:35301737-35301756 | MS.gene057878:CDS | 45.0% | |
| ! | TCCAACAGACAGGGCTTTAT+TGG | - | chr4.4:35302552-35302571 | MS.gene057878:CDS | 45.0% |
| !! | AAAAGCGCTTTGTGCCAGTA+CGG | + | chr4.4:35303340-35303359 | None:intergenic | 45.0% |
| AAGCACAATGCTTACCGGGA+AGG | + | chr4.4:35302806-35302825 | None:intergenic | 50.0% | |
| AGAGCACATCCAGAGAGATC+AGG | - | chr4.4:35302270-35302289 | MS.gene057878:intron | 50.0% | |
| AGCTTACCACTGCCTGTGAA+AGG | - | chr4.4:35301981-35302000 | MS.gene057878:intron | 50.0% | |
| CAGTTTCGTTCACTTGGGCA+TGG | - | chr4.4:35301953-35301972 | MS.gene057878:intron | 50.0% | |
| CCAGAGAGATCAGGGTTTGA+TGG | - | chr4.4:35302279-35302298 | MS.gene057878:intron | 50.0% | |
| CCATCAAACCCTGATCTCTC+TGG | + | chr4.4:35302282-35302301 | None:intergenic | 50.0% | |
| CCCACAGTCAACTTTGTTCC+CGG | - | chr4.4:35301762-35301781 | MS.gene057878:CDS | 50.0% | |
| CCGGGAACAAAGTTGACTGT+GGG | + | chr4.4:35301765-35301784 | None:intergenic | 50.0% | |
| CGGCTTCCTGATGCTAAACA+AGG | - | chr4.4:35301900-35301919 | MS.gene057878:intron | 50.0% | |
| GAGCACATCCAGAGAGATCA+GGG | - | chr4.4:35302271-35302290 | MS.gene057878:intron | 50.0% | |
| GCACAACATACCCTTCTTCC+GGG | + | chr4.4:35301783-35301802 | None:intergenic | 50.0% | |
| GTTGCAGTTGAGGTTACTGG+GGG | - | chr4.4:35301738-35301757 | MS.gene057878:CDS | 50.0% | |
| TCCGGGAACAAAGTTGACTG+TGG | + | chr4.4:35301766-35301785 | None:intergenic | 50.0% | |
| ! | TCCCGGTAAGCATTGTGCTT+TGG | - | chr4.4:35302806-35302825 | MS.gene057878:intron | 50.0% |
| !! | GTACTGGCACAAAGCGCTTT+TGG | - | chr4.4:35303339-35303358 | MS.gene057878:intron | 50.0% |
| ATGCATCCTCATCCTGCCAG+AGG | + | chr4.4:35303230-35303249 | None:intergenic | 55.0% | |
| ATTCTCCCTCTGGCAGGATG+AGG | - | chr4.4:35303221-35303240 | MS.gene057878:intron | 55.0% | |
| CTCAAAGGCAACTGCTCCTG+TGG | - | chr4.4:35303308-35303327 | MS.gene057878:intron | 55.0% | |
| GGAGCAGTTGCCTTTGAGCT+TGG | + | chr4.4:35303306-35303325 | None:intergenic | 55.0% | |
| TCAGAGGGTCCTCTGTCCAA+GGG | + | chr4.4:35302305-35302324 | None:intergenic | 55.0% | |
| TCCTGTGGATGCAACCGTAC+TGG | - | chr4.4:35303323-35303342 | MS.gene057878:intron | 55.0% | |
| TGCATCCTCATCCTGCCAGA+GGG | + | chr4.4:35303229-35303248 | None:intergenic | 55.0% | |
| TTCAGAGGGTCCTCTGTCCA+AGG | + | chr4.4:35302306-35302325 | None:intergenic | 55.0% | |
| ! | GATCAGGGTTTGATGGCCCT+TGG | - | chr4.4:35302286-35302305 | MS.gene057878:intron | 55.0% |
| ! | GTTTGATGGCCCTTGGACAG+AGG | - | chr4.4:35302293-35302312 | MS.gene057878:intron | 55.0% |
| ! | TGGCTTTGCGCCAAGCTCAA+AGG | - | chr4.4:35303293-35303312 | MS.gene057878:intron | 55.0% |
| !! | TGCGGGTGTTGTTGCAGTTG+AGG | - | chr4.4:35301728-35301747 | MS.gene057878:CDS | 55.0% |
| ACCGAGGATCACCACTGCAG+CGG | + | chr4.4:35303376-35303395 | None:intergenic | 60.0% | |
| AGTTGTAGCTGCCGCTGCAG+TGG | - | chr4.4:35303362-35303381 | MS.gene057878:intron | 60.0% | |
| ATCAGGAAGCCGCCCATCTC+TGG | + | chr4.4:35301892-35301911 | None:intergenic | 60.0% | |
| GCCAGTACGGTTGCATCCAC+AGG | + | chr4.4:35303327-35303346 | None:intergenic | 60.0% | |
| ! | ACTGTCTGGGGCACATACGC+TGG | - | chr4.4:35302166-35302185 | MS.gene057878:intron | 60.0% |
| GCCGCTGCAGTGGTGATCCT+CGG | - | chr4.4:35303372-35303391 | MS.gene057878:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 35301726 | 35303428 | 35301726 | ID=MS.gene057878 |
| chr4.4 | mRNA | 35301726 | 35303428 | 35301726 | ID=MS.gene057878.t1;Parent=MS.gene057878 |
| chr4.4 | exon | 35303363 | 35303428 | 35303363 | ID=MS.gene057878.t1.exon1;Parent=MS.gene057878.t1 |
| chr4.4 | CDS | 35303363 | 35303428 | 35303363 | ID=cds.MS.gene057878.t1;Parent=MS.gene057878.t1 |
| chr4.4 | exon | 35303233 | 35303281 | 35303233 | ID=MS.gene057878.t1.exon2;Parent=MS.gene057878.t1 |
| chr4.4 | CDS | 35303233 | 35303281 | 35303233 | ID=cds.MS.gene057878.t1;Parent=MS.gene057878.t1 |
| chr4.4 | exon | 35302967 | 35303049 | 35302967 | ID=MS.gene057878.t1.exon3;Parent=MS.gene057878.t1 |
| chr4.4 | CDS | 35302967 | 35303049 | 35302967 | ID=cds.MS.gene057878.t1;Parent=MS.gene057878.t1 |
| chr4.4 | exon | 35302808 | 35302887 | 35302808 | ID=MS.gene057878.t1.exon4;Parent=MS.gene057878.t1 |
| chr4.4 | CDS | 35302808 | 35302887 | 35302808 | ID=cds.MS.gene057878.t1;Parent=MS.gene057878.t1 |
| chr4.4 | exon | 35302539 | 35302641 | 35302539 | ID=MS.gene057878.t1.exon5;Parent=MS.gene057878.t1 |
| chr4.4 | CDS | 35302539 | 35302641 | 35302539 | ID=cds.MS.gene057878.t1;Parent=MS.gene057878.t1 |
| chr4.4 | exon | 35301726 | 35301917 | 35301726 | ID=MS.gene057878.t1.exon6;Parent=MS.gene057878.t1 |
| chr4.4 | CDS | 35301726 | 35301917 | 35301726 | ID=cds.MS.gene057878.t1;Parent=MS.gene057878.t1 |
| Gene Sequence |
| Protein sequence |
