Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057876.t1 | XP_003607199.1 | 89.5 | 190 | 2 | 1 | 1 | 172 | 98 | 287 | 6.10E-87 | 330.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057876.t1 | Q42564 | 68.1 | 191 | 42 | 2 | 1 | 172 | 97 | 287 | 6.7e-66 | 251.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057876.t1 | G7JNF5 | 89.5 | 190 | 2 | 1 | 1 | 172 | 98 | 287 | 4.4e-87 | 330.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049396 | MS.gene057876 | 0.8235 | 1.34E-53 | -1.69E-46 |
| MS.gene050499 | MS.gene057876 | 0.801275 | 9.72E-49 | -1.69E-46 |
| MS.gene05080 | MS.gene057876 | 0.803919 | 2.77E-49 | -1.69E-46 |
| MS.gene051509 | MS.gene057876 | 0.819022 | 1.44E-52 | -1.69E-46 |
| MS.gene053574 | MS.gene057876 | 0.806959 | 6.39E-50 | -1.69E-46 |
| MS.gene053626 | MS.gene057876 | 0.85207 | 5.87E-61 | -1.69E-46 |
| MS.gene056166 | MS.gene057876 | 0.844021 | 9.78E-59 | -1.69E-46 |
| MS.gene056422 | MS.gene057876 | 0.808866 | 2.51E-50 | -1.69E-46 |
| MS.gene057076 | MS.gene057876 | 0.802868 | 4.57E-49 | -1.69E-46 |
| MS.gene057872 | MS.gene057876 | 0.872135 | 4.01E-67 | -1.69E-46 |
| MS.gene057876 | MS.gene057878 | 0.840261 | 9.68E-58 | -1.69E-46 |
| MS.gene057876 | MS.gene058120 | 0.804705 | 1.90E-49 | -1.69E-46 |
| MS.gene057876 | MS.gene058130 | 0.802375 | 5.78E-49 | -1.69E-46 |
| MS.gene057876 | MS.gene059367 | 0.819381 | 1.20E-52 | -1.69E-46 |
| MS.gene057876 | MS.gene059368 | 0.821098 | 4.84E-53 | -1.69E-46 |
| MS.gene057876 | MS.gene060778 | 0.818682 | 1.73E-52 | -1.69E-46 |
| MS.gene057876 | MS.gene061862 | 0.80006 | 1.72E-48 | -1.69E-46 |
| MS.gene057876 | MS.gene061863 | 0.813547 | 2.42E-51 | -1.69E-46 |
| MS.gene057876 | MS.gene062923 | 0.807974 | 3.89E-50 | -1.69E-46 |
| MS.gene057876 | MS.gene063444 | 0.823074 | 1.68E-53 | -1.69E-46 |
| MS.gene057876 | MS.gene06524 | 0.801938 | 7.11E-49 | -1.69E-46 |
| MS.gene057876 | MS.gene065540 | 0.808809 | 2.58E-50 | -1.69E-46 |
| MS.gene057876 | MS.gene06768 | 0.814791 | 1.29E-51 | -1.69E-46 |
| MS.gene057876 | MS.gene067713 | 0.813695 | 2.25E-51 | -1.69E-46 |
| MS.gene057876 | MS.gene068029 | 0.807369 | 5.23E-50 | -1.69E-46 |
| MS.gene057876 | MS.gene068509 | 0.813461 | 2.53E-51 | -1.69E-46 |
| MS.gene057876 | MS.gene072303 | 0.800536 | 1.38E-48 | -1.69E-46 |
| MS.gene057876 | MS.gene072306 | 0.805425 | 1.34E-49 | -1.69E-46 |
| MS.gene057876 | MS.gene073118 | 0.804701 | 1.90E-49 | -1.69E-46 |
| MS.gene057876 | MS.gene073243 | 0.826985 | 2.01E-54 | -1.69E-46 |
| MS.gene057876 | MS.gene08550 | 0.825595 | 4.30E-54 | -1.69E-46 |
| MS.gene057876 | MS.gene08766 | 0.802642 | 5.09E-49 | -1.69E-46 |
| MS.gene057876 | MS.gene08833 | 0.819137 | 1.36E-52 | -1.69E-46 |
| MS.gene057876 | MS.gene08985 | 0.808283 | 3.34E-50 | -1.69E-46 |
| MS.gene057876 | MS.gene21150 | 0.803593 | 3.24E-49 | -1.69E-46 |
| MS.gene057876 | MS.gene27583 | 0.822151 | 2.76E-53 | -1.69E-46 |
| MS.gene057876 | MS.gene28105 | 0.810288 | 1.24E-50 | -1.69E-46 |
| MS.gene057876 | MS.gene29182 | 0.816857 | 4.45E-52 | -1.69E-46 |
| MS.gene057876 | MS.gene30150 | 0.824712 | 6.96E-54 | -1.69E-46 |
| MS.gene057876 | MS.gene31105 | 0.808279 | 3.35E-50 | -1.69E-46 |
| MS.gene057876 | MS.gene31106 | 0.812114 | 4.99E-51 | -1.69E-46 |
| MS.gene057876 | MS.gene34171 | 0.808955 | 2.40E-50 | -1.69E-46 |
| MS.gene057876 | MS.gene34194 | 0.804634 | 1.97E-49 | -1.69E-46 |
| MS.gene057876 | MS.gene35338 | 0.813211 | 2.87E-51 | -1.69E-46 |
| MS.gene057876 | MS.gene36240 | 0.817933 | 2.55E-52 | -1.69E-46 |
| MS.gene057876 | MS.gene39339 | 0.806177 | 9.34E-50 | -1.69E-46 |
| MS.gene057876 | MS.gene39678 | 0.819249 | 1.28E-52 | -1.69E-46 |
| MS.gene057876 | MS.gene41873 | 0.800263 | 1.56E-48 | -1.69E-46 |
| MS.gene057876 | MS.gene44305 | 0.823782 | 1.15E-53 | -1.69E-46 |
| MS.gene057876 | MS.gene48646 | 0.841471 | 4.66E-58 | -1.69E-46 |
| MS.gene057876 | MS.gene48648 | 0.834306 | 3.24E-56 | -1.69E-46 |
| MS.gene057876 | MS.gene48649 | 0.837753 | 4.32E-57 | -1.69E-46 |
| MS.gene057876 | MS.gene50091 | 0.813427 | 2.57E-51 | -1.69E-46 |
| MS.gene057876 | MS.gene55677 | 0.800992 | 1.11E-48 | -1.69E-46 |
| MS.gene057876 | MS.gene55820 | 0.816718 | 4.79E-52 | -1.69E-46 |
| MS.gene057876 | MS.gene59603 | 0.813696 | 2.25E-51 | -1.69E-46 |
| MS.gene057876 | MS.gene63310 | 0.804992 | 1.66E-49 | -1.69E-46 |
| MS.gene057876 | MS.gene63480 | 0.800822 | 1.20E-48 | -1.69E-46 |
| MS.gene057876 | MS.gene63788 | 0.807814 | 4.20E-50 | -1.69E-46 |
| MS.gene057876 | MS.gene64151 | 0.812389 | 4.35E-51 | -1.69E-46 |
| MS.gene057876 | MS.gene65675 | 0.800062 | 1.72E-48 | -1.69E-46 |
| MS.gene057876 | MS.gene70167 | 0.842493 | 2.50E-58 | -1.69E-46 |
| MS.gene057876 | MS.gene70359 | 0.819359 | 1.21E-52 | -1.69E-46 |
| MS.gene057876 | MS.gene71651 | 0.800486 | 1.41E-48 | -1.69E-46 |
| MS.gene057876 | MS.gene71697 | 0.800727 | 1.26E-48 | -1.69E-46 |
| MS.gene057876 | MS.gene73339 | 0.817482 | 3.22E-52 | -1.69E-46 |
| MS.gene057876 | MS.gene73493 | 0.802374 | 5.78E-49 | -1.69E-46 |
| MS.gene057876 | MS.gene73665 | 0.833588 | 4.89E-56 | -1.69E-46 |
| MS.gene057876 | MS.gene76840 | 0.818225 | 2.19E-52 | -1.69E-46 |
| MS.gene057876 | MS.gene78396 | 0.807546 | 4.79E-50 | -1.69E-46 |
| MS.gene057876 | MS.gene82917 | 0.821458 | 3.99E-53 | -1.69E-46 |
| MS.gene057876 | MS.gene83251 | 0.840164 | 1.03E-57 | -1.69E-46 |
| MS.gene057876 | MS.gene84140 | 0.819717 | 1.00E-52 | -1.69E-46 |
| MS.gene057876 | MS.gene86071 | 0.826042 | 3.37E-54 | -1.69E-46 |
| MS.gene057876 | MS.gene86294 | 0.823613 | 1.26E-53 | -1.69E-46 |
| MS.gene057876 | MS.gene90269 | 0.820985 | 5.14E-53 | -1.69E-46 |
| MS.gene057876 | MS.gene92147 | 0.814325 | 1.63E-51 | -1.69E-46 |
| MS.gene057876 | MS.gene94628 | 0.810221 | 1.28E-50 | -1.69E-46 |
| MS.gene057876 | MS.gene95715 | 0.818367 | 2.03E-52 | -1.69E-46 |
| MS.gene057876 | MS.gene96072 | 0.807168 | 5.77E-50 | -1.69E-46 |
| MS.gene057876 | MS.gene97656 | 0.80697 | 6.35E-50 | -1.69E-46 |
| MS.gene057876 | MS.gene98119 | 0.837796 | 4.21E-57 | -1.69E-46 |
| MS.gene057876 | MS.gene98166 | 0.81328 | 2.77E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057876.t1 | MTR_4g073410 | 89.474 | 190 | 2 | 1 | 1 | 172 | 98 | 287 | 2.46e-118 | 336 |
| MS.gene057876.t1 | MTR_5g022510 | 59.574 | 188 | 53 | 2 | 1 | 170 | 72 | 254 | 3.35e-73 | 221 |
| MS.gene057876.t1 | MTR_5g022510 | 59.574 | 188 | 53 | 2 | 1 | 170 | 97 | 279 | 1.01e-72 | 220 |
| MS.gene057876.t1 | MTR_4g061140 | 58.667 | 150 | 43 | 1 | 1 | 131 | 65 | 214 | 1.04e-51 | 164 |
| MS.gene057876.t1 | MTR_4g061140 | 58.667 | 150 | 43 | 1 | 1 | 131 | 99 | 248 | 1.57e-51 | 165 |
| MS.gene057876.t1 | MTR_4g061140 | 58.108 | 148 | 43 | 1 | 1 | 129 | 99 | 246 | 3.88e-50 | 161 |
| MS.gene057876.t1 | MTR_5g008440 | 55.224 | 134 | 55 | 2 | 1 | 129 | 48 | 181 | 1.25e-41 | 138 |
| MS.gene057876.t1 | MTR_3g088160 | 42.857 | 168 | 57 | 5 | 1 | 129 | 188 | 355 | 2.88e-30 | 113 |
| MS.gene057876.t1 | MTR_3g088160 | 42.857 | 168 | 57 | 5 | 1 | 129 | 188 | 355 | 4.75e-30 | 114 |
| MS.gene057876.t1 | MTR_3g107060 | 34.459 | 148 | 83 | 3 | 1 | 134 | 172 | 319 | 2.11e-18 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057876.t1 | AT4G35000 | 68.063 | 191 | 42 | 2 | 1 | 172 | 97 | 287 | 5.27e-78 | 234 |
| MS.gene057876.t1 | AT4G35970 | 53.684 | 190 | 64 | 3 | 1 | 172 | 96 | 279 | 5.72e-62 | 193 |
| MS.gene057876.t1 | AT3G09640 | 56.376 | 149 | 47 | 1 | 1 | 131 | 100 | 248 | 7.62e-50 | 161 |
| MS.gene057876.t1 | AT3G09640 | 56.376 | 149 | 47 | 1 | 1 | 131 | 100 | 248 | 7.62e-50 | 161 |
| MS.gene057876.t1 | AT1G07890 | 56.000 | 150 | 47 | 1 | 1 | 131 | 99 | 248 | 4.63e-49 | 159 |
| MS.gene057876.t1 | AT1G07890 | 56.000 | 150 | 47 | 1 | 1 | 131 | 99 | 248 | 4.63e-49 | 159 |
| MS.gene057876.t1 | AT1G07890 | 56.000 | 150 | 47 | 1 | 1 | 131 | 99 | 248 | 4.63e-49 | 159 |
| MS.gene057876.t1 | AT1G07890 | 56.000 | 150 | 47 | 1 | 1 | 131 | 99 | 248 | 4.63e-49 | 159 |
| MS.gene057876.t1 | AT1G07890 | 56.000 | 150 | 47 | 1 | 1 | 131 | 99 | 248 | 4.63e-49 | 159 |
| MS.gene057876.t1 | AT1G07890 | 56.000 | 150 | 47 | 1 | 1 | 131 | 99 | 248 | 4.63e-49 | 159 |
| MS.gene057876.t1 | AT1G07890 | 56.000 | 150 | 47 | 1 | 1 | 131 | 99 | 248 | 4.63e-49 | 159 |
| MS.gene057876.t1 | AT1G07890 | 55.034 | 149 | 48 | 1 | 1 | 130 | 99 | 247 | 4.94e-48 | 156 |
| MS.gene057876.t1 | AT4G35970 | 55.118 | 127 | 38 | 2 | 1 | 109 | 96 | 221 | 8.74e-41 | 137 |
| MS.gene057876.t1 | AT1G77490 | 41.667 | 168 | 59 | 4 | 1 | 129 | 173 | 340 | 5.15e-29 | 110 |
| MS.gene057876.t1 | AT1G77490 | 41.667 | 168 | 59 | 4 | 1 | 129 | 173 | 340 | 5.71e-29 | 110 |
| MS.gene057876.t1 | AT4G08390 | 39.881 | 168 | 62 | 4 | 1 | 129 | 194 | 361 | 1.62e-28 | 108 |
| MS.gene057876.t1 | AT4G08390 | 39.881 | 168 | 62 | 4 | 1 | 129 | 194 | 361 | 1.62e-28 | 108 |
| MS.gene057876.t1 | AT4G08390 | 39.881 | 168 | 62 | 4 | 1 | 129 | 194 | 361 | 1.62e-28 | 108 |
| MS.gene057876.t1 | AT4G08390 | 39.881 | 168 | 62 | 4 | 1 | 129 | 193 | 360 | 1.65e-28 | 108 |
| MS.gene057876.t1 | AT4G32320 | 36.364 | 143 | 77 | 3 | 1 | 129 | 181 | 323 | 6.65e-19 | 82.4 |
| MS.gene057876.t1 | AT4G08390 | 33.929 | 168 | 46 | 5 | 1 | 129 | 194 | 335 | 1.91e-18 | 81.3 |
Find 52 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGTTGCAGTTGAGGTTAC+TGG | 0.120093 | 4.4:+35276778 | MS.gene057876:CDS |
| TCCAACAGACAGGGCTTTAT+TGG | 0.192934 | 4.4:+35277593 | MS.gene057876:CDS |
| CCTTTGTGCTTCCAGCTTGC+GGG | 0.246744 | 4.4:+35276754 | None:intergenic |
| TGTCAATATCAGGATACTTT+TGG | 0.287568 | 4.4:+35277542 | MS.gene057876:intron |
| TCAACATAACGGTGAAATTC+AGG | 0.298735 | 4.4:-35277621 | None:intergenic |
| GTACTGGCACAAAGCGCTTT+TGG | 0.320365 | 4.4:+35278380 | MS.gene057876:CDS |
| TGCACAACATACCCTTCTTC+CGG | 0.335633 | 4.4:-35276824 | None:intergenic |
| TTGTTGCAGTTGAGGTTACT+GGG | 0.345113 | 4.4:+35276779 | MS.gene057876:CDS |
| CCCACAGTCAACTTTGTTCC+CGG | 0.379705 | 4.4:+35276805 | MS.gene057876:CDS |
| GCACAACATACCCTTCTTCC+GGG | 0.398155 | 4.4:-35276823 | None:intergenic |
| CATAAGAAACTTTCAGAGCT+TGG | 0.401756 | 4.4:+35278314 | MS.gene057876:CDS |
| CCATCAAACCCTGATCTCTC+TGG | 0.416214 | 4.4:-35277319 | None:intergenic |
| GGAGCAGTTGCCTTTGAGCT+TGG | 0.421255 | 4.4:-35278344 | None:intergenic |
| CCAGAGAGATCAGGGTTTGA+TGG | 0.443075 | 4.4:+35277319 | MS.gene057876:CDS |
| ATCAGGAAGCCGCCCATCTC+TGG | 0.443990 | 4.4:-35276932 | None:intergenic |
| TCAACTTTGTTCCCGGAAGA+AGG | 0.446728 | 4.4:+35276812 | MS.gene057876:CDS |
| AGAGCACATCCAGAGAGATC+AGG | 0.450497 | 4.4:+35277310 | MS.gene057876:CDS |
| TCCAATAAAGCCCTGTCTGT+TGG | 0.463470 | 4.4:-35277594 | None:intergenic |
| TGGCTTTGCGCCAAGCTCAA+AGG | 0.464700 | 4.4:+35278334 | MS.gene057876:CDS |
| GCCAGTACGGTTGCATCCAC+AGG | 0.465545 | 4.4:-35278365 | None:intergenic |
| AACACACCTTGTTTAGCATC+AGG | 0.470481 | 4.4:-35276949 | None:intergenic |
| TGCTTAAACTTCCAACAGAC+AGG | 0.474376 | 4.4:+35277583 | MS.gene057876:CDS |
| GATCAGGGTTTGATGGCCCT+TGG | 0.481908 | 4.4:+35277326 | MS.gene057876:CDS |
| GCCGCTGCAGTGGTGATCCT+CGG | 0.490613 | 4.4:+35278413 | MS.gene057876:CDS |
| TCAAAAGTATGTACCAGAGA+TGG | 0.493165 | 4.4:+35276919 | MS.gene057876:CDS |
| TCCTGTGGATGCAACCGTAC+TGG | 0.493313 | 4.4:+35278364 | MS.gene057876:CDS |
| CTCAAAGGCAACTGCTCCTG+TGG | 0.511925 | 4.4:+35278349 | MS.gene057876:CDS |
| TTCAGAGGGTCCTCTGTCCA+AGG | 0.512263 | 4.4:-35277343 | None:intergenic |
| TGCGGGTGTTGTTGCAGTTG+AGG | 0.524490 | 4.4:+35276771 | MS.gene057876:CDS |
| TTGTATGAAACTCACAAAAG+AGG | 0.531958 | 4.4:+35278440 | MS.gene057876:CDS |
| GAGCACATCCAGAGAGATCA+GGG | 0.542419 | 4.4:+35277311 | MS.gene057876:CDS |
| CAAAAGTATGTACCAGAGAT+GGG | 0.549843 | 4.4:+35276920 | MS.gene057876:CDS |
| GTTTGATGGCCCTTGGACAG+AGG | 0.551642 | 4.4:+35277333 | MS.gene057876:CDS |
| TGTATGAAACTCACAAAAGA+GGG | 0.552331 | 4.4:+35278441 | MS.gene057876:CDS |
| CAACTTTGTTCCCGGAAGAA+GGG | 0.554225 | 4.4:+35276813 | MS.gene057876:CDS |
| TATGAGTTATCAAACTTCAG+AGG | 0.559558 | 4.4:-35277358 | None:intergenic |
| AAAAGCGCTTTGTGCCAGTA+CGG | 0.571570 | 4.4:-35278378 | None:intergenic |
| CGGCTTCCTGATGCTAAACA+AGG | 0.575592 | 4.4:+35276943 | MS.gene057876:CDS |
| CCCATACGATAAAGATATCA+CGG | 0.582566 | 4.4:-35277159 | None:intergenic |
| ATGAGTTATCAAACTTCAGA+GGG | 0.599283 | 4.4:-35277357 | None:intergenic |
| TCGCATACAGCTCAACATAA+CGG | 0.606359 | 4.4:-35277632 | None:intergenic |
| CCGGGAACAAAGTTGACTGT+GGG | 0.622160 | 4.4:-35276805 | None:intergenic |
| TCAGAGGGTCCTCTGTCCAA+GGG | 0.622882 | 4.4:-35277342 | None:intergenic |
| ACCGAGGATCACCACTGCAG+CGG | 0.626779 | 4.4:-35278414 | None:intergenic |
| TCCGGGAACAAAGTTGACTG+TGG | 0.630776 | 4.4:-35276806 | None:intergenic |
| TTATGTTGAGCTGTATGCGA+AGG | 0.641815 | 4.4:+35277635 | MS.gene057876:CDS |
| TGTTGCAGTTGAGGTTACTG+GGG | 0.642422 | 4.4:+35276780 | MS.gene057876:CDS |
| AGTTGTAGCTGCCGCTGCAG+TGG | 0.652303 | 4.4:+35278403 | MS.gene057876:CDS |
| GCTTAAACTTCCAACAGACA+GGG | 0.655046 | 4.4:+35277584 | MS.gene057876:CDS |
| GTTGCAGTTGAGGTTACTGG+GGG | 0.656351 | 4.4:+35276781 | MS.gene057876:CDS |
| GAGTTTCATACAAGTAACCG+AGG | 0.700364 | 4.4:-35278430 | None:intergenic |
| AAGTATGTACCAGAGATGGG+CGG | 0.726843 | 4.4:+35276923 | MS.gene057876:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATAAAAATAAAATAT+TGG | - | chr4.4:35277469-35277488 | None:intergenic | 0.0% |
| !! | AAAAATAAAAATAAAATATT+GGG | - | chr4.4:35277468-35277487 | None:intergenic | 0.0% |
| !!! | TATTTTTTTAATTTTTATTT+TGG | + | chr4.4:35277481-35277500 | MS.gene057876:intron | 0.0% |
| !! | AATAATAAAAAGATATAGAA+AGG | - | chr4.4:35277239-35277258 | None:intergenic | 10.0% |
| !! | GAAAATAAAATAAGAATTTA+TGG | - | chr4.4:35277276-35277295 | None:intergenic | 10.0% |
| !! | ATAACTAATATTGTAACGAA+AGG | - | chr4.4:35276853-35276872 | None:intergenic | 20.0% |
| !! | ATATTGACAAAGATATTTAG+GGG | - | chr4.4:35277531-35277550 | None:intergenic | 20.0% |
| !! | GATATTGACAAAGATATTTA+GGG | - | chr4.4:35277532-35277551 | None:intergenic | 20.0% |
| !! | TAAATATCTTTGTCAATATC+AGG | + | chr4.4:35277532-35277551 | MS.gene057876:intron | 20.0% |
| !! | TATAAACATGTCAATGATAT+TGG | + | chr4.4:35277120-35277139 | MS.gene057876:intron | 20.0% |
| !! | TGATATTGACAAAGATATTT+AGG | - | chr4.4:35277533-35277552 | None:intergenic | 20.0% |
| !!! | AGATTCATTTAATTTAACGA+TGG | - | chr4.4:35278205-35278224 | None:intergenic | 20.0% |
| !!! | ATTTTATTTTCTGTGTTTCA+AGG | + | chr4.4:35277285-35277304 | MS.gene057876:intron | 20.0% |
| !!! | TACGTTATTTAGTTTAAATG+TGG | - | chr4.4:35278056-35278075 | None:intergenic | 20.0% |
| !!! | TTTTATTTTCTGTGTTTCAA+GGG | + | chr4.4:35277286-35277305 | MS.gene057876:intron | 20.0% |
| ! | ATATTAAGTAAGAAAGCTGT+TGG | - | chr4.4:35277946-35277965 | None:intergenic | 25.0% |
| ! | TCATCAAAGAAAATCAATAG+TGG | + | chr4.4:35278147-35278166 | MS.gene057876:intron | 25.0% |
| ! | TGCTATTGAAAAACCATATT+TGG | - | chr4.4:35277732-35277751 | None:intergenic | 25.0% |
| !! | TATTGGATCAATCTTTTGAT+TGG | + | chr4.4:35277788-35277807 | MS.gene057876:intron | 25.0% |
| !! | TGTTTCTAAATTATTGTCAG+TGG | + | chr4.4:35276968-35276987 | MS.gene057876:intron | 25.0% |
| !!! | TCTTATTTTGTTGATGTGTA+GGG | - | chr4.4:35277068-35277087 | None:intergenic | 25.0% |
| !!! | TTCTTATTTTGTTGATGTGT+AGG | - | chr4.4:35277069-35277088 | None:intergenic | 25.0% |
| !!! | TTTTTAGCAAAACAGAAACT+TGG | - | chr4.4:35278126-35278145 | None:intergenic | 25.0% |
| AACATGTCAATGATATTGGT+AGG | + | chr4.4:35277124-35277143 | MS.gene057876:intron | 30.0% | |
| AATTAGAGAATGACAAGTTC+AGG | - | chr4.4:35276881-35276900 | None:intergenic | 30.0% | |
| ACCTTAATAGTTGTAACAGA+AGG | - | chr4.4:35278026-35278045 | None:intergenic | 30.0% | |
| AGAAAAGAAAATCCTTTCAC+AGG | - | chr4.4:35277038-35277057 | None:intergenic | 30.0% | |
| ATGAGTTATCAAACTTCAGA+GGG | - | chr4.4:35277360-35277379 | None:intergenic | 30.0% | |
| ATTGAAAAACCATATTTGGC+AGG | - | chr4.4:35277728-35277747 | None:intergenic | 30.0% | |
| ATTTCCTACATGTGCTAATT+GGG | + | chr4.4:35277912-35277931 | MS.gene057876:intron | 30.0% | |
| CTCTTGTTGCATTTGTTTAT+TGG | + | chr4.4:35277771-35277790 | MS.gene057876:intron | 30.0% | |
| TATGAGTTATCAAACTTCAG+AGG | - | chr4.4:35277361-35277380 | None:intergenic | 30.0% | |
| TCCTTCTGTTACAACTATTA+AGG | + | chr4.4:35278022-35278041 | MS.gene057876:intron | 30.0% | |
| TGTATGAAACTCACAAAAGA+GGG | + | chr4.4:35278441-35278460 | MS.gene057876:CDS | 30.0% | |
| TTGTATGAAACTCACAAAAG+AGG | + | chr4.4:35278440-35278459 | MS.gene057876:CDS | 30.0% | |
| ! | AAACTTGGCATGAATGTTTT+GGG | - | chr4.4:35278111-35278130 | None:intergenic | 30.0% |
| ! | AAATGCAACAAGAGTACAAA+TGG | - | chr4.4:35277765-35277784 | None:intergenic | 30.0% |
| ! | TATGAAATCAGTTTTCAGCA+GGG | - | chr4.4:35277699-35277718 | None:intergenic | 30.0% |
| ! | TCTAATTTTCTGTGTCATGT+AGG | + | chr4.4:35276894-35276913 | MS.gene057876:intron | 30.0% |
| ! | TGTCAATATCAGGATACTTT+TGG | + | chr4.4:35277542-35277561 | MS.gene057876:intron | 30.0% |
| ! | TTATGAAATCAGTTTTCAGC+AGG | - | chr4.4:35277700-35277719 | None:intergenic | 30.0% |
| !! | CATTAAGTAGGTTGATTAGT+AGG | + | chr4.4:35277820-35277839 | MS.gene057876:intron | 30.0% |
| !! | TTTATTATTTGCTGTGATCG+CGG | + | chr4.4:35277250-35277269 | MS.gene057876:intron | 30.0% |
| !!! | AGTTTTTTTGCTTTACTACG+AGG | + | chr4.4:35277416-35277435 | MS.gene057876:intron | 30.0% |
| AAAGATATTGTTGCACTGTC+TGG | + | chr4.4:35277192-35277211 | MS.gene057876:intron | 35.0% | |
| AACATTGTGATAATCGCAGA+TGG | - | chr4.4:35277885-35277904 | None:intergenic | 35.0% | |
| AAGATATTGTTGCACTGTCT+GGG | + | chr4.4:35277193-35277212 | MS.gene057876:intron | 35.0% | |
| AGACCAACGTATTAAGTAGT+TGG | - | chr4.4:35277997-35278016 | None:intergenic | 35.0% | |
| AGATATGAGCTCTTTCTACT+TGG | + | chr4.4:35277971-35277990 | MS.gene057876:intron | 35.0% | |
| CATAAGAAACTTTCAGAGCT+TGG | + | chr4.4:35278314-35278333 | MS.gene057876:CDS | 35.0% | |
| CCCATACGATAAAGATATCA+CGG | - | chr4.4:35277162-35277181 | None:intergenic | 35.0% | |
| CCGTGATATCTTTATCGTAT+GGG | + | chr4.4:35277159-35277178 | MS.gene057876:intron | 35.0% | |
| GATTTCCTACATGTGCTAAT+TGG | + | chr4.4:35277911-35277930 | MS.gene057876:intron | 35.0% | |
| TCAACATAACGGTGAAATTC+AGG | - | chr4.4:35277624-35277643 | None:intergenic | 35.0% | |
| TCCGTGATATCTTTATCGTA+TGG | + | chr4.4:35277158-35277177 | MS.gene057876:intron | 35.0% | |
| TCTAATTCTAATTCTCCCTC+TGG | + | chr4.4:35278252-35278271 | MS.gene057876:intron | 35.0% | |
| TGGAACTCATTGCATTAAGT+AGG | + | chr4.4:35277808-35277827 | MS.gene057876:intron | 35.0% | |
| ! | ATAAAGTGTCCTGCCAAATA+TGG | + | chr4.4:35277716-35277735 | MS.gene057876:intron | 35.0% |
| ! | CAAAAGTATGTACCAGAGAT+GGG | + | chr4.4:35276920-35276939 | MS.gene057876:CDS | 35.0% |
| ! | GAAACTTGGCATGAATGTTT+TGG | - | chr4.4:35278112-35278131 | None:intergenic | 35.0% |
| ! | TCAAAAGTATGTACCAGAGA+TGG | + | chr4.4:35276919-35276938 | MS.gene057876:CDS | 35.0% |
| AGATATTGTTGCACTGTCTG+GGG | + | chr4.4:35277194-35277213 | MS.gene057876:intron | 40.0% | |
| AGCTGTATGCGAAGGTAATT+GGG | + | chr4.4:35277643-35277662 | MS.gene057876:intron | 40.0% | |
| GAGTTTCATACAAGTAACCG+AGG | - | chr4.4:35278433-35278452 | None:intergenic | 40.0% | |
| GCTTAAACTTCCAACAGACA+GGG | + | chr4.4:35277584-35277603 | MS.gene057876:CDS | 40.0% | |
| GTACAACAGTTTCGTTCACT+TGG | + | chr4.4:35276990-35277009 | MS.gene057876:intron | 40.0% | |
| TCGCATACAGCTCAACATAA+CGG | - | chr4.4:35277635-35277654 | None:intergenic | 40.0% | |
| TGCTTAAACTTCCAACAGAC+AGG | + | chr4.4:35277583-35277602 | MS.gene057876:CDS | 40.0% | |
| TGGCCAACTACTTAATACGT+TGG | + | chr4.4:35277991-35278010 | MS.gene057876:intron | 40.0% | |
| TTATGTTGAGCTGTATGCGA+AGG | + | chr4.4:35277635-35277654 | MS.gene057876:CDS | 40.0% | |
| TTGTTGCAGTTGAGGTTACT+GGG | + | chr4.4:35276779-35276798 | MS.gene057876:CDS | 40.0% | |
| ! | AACACACCTTGTTTAGCATC+AGG | - | chr4.4:35276952-35276971 | None:intergenic | 40.0% |
| !! | TTGGCATGAATGTTTTGGGT+AGG | - | chr4.4:35278107-35278126 | None:intergenic | 40.0% |
| AAGTATGTACCAGAGATGGG+CGG | + | chr4.4:35276923-35276942 | MS.gene057876:CDS | 45.0% | |
| ACAGTTTCGTTCACTTGGCA+TGG | + | chr4.4:35276995-35277014 | MS.gene057876:intron | 45.0% | |
| ATTCTAATTCTCCCTCTGGC+AGG | + | chr4.4:35278256-35278275 | MS.gene057876:intron | 45.0% | |
| CAACTTTGTTCCCGGAAGAA+GGG | + | chr4.4:35276813-35276832 | MS.gene057876:CDS | 45.0% | |
| CTCCAAAGCACAATGCTTAC+CGG | - | chr4.4:35277852-35277871 | None:intergenic | 45.0% | |
| GAAAATCCTTTCACAGGCAG+TGG | - | chr4.4:35277032-35277051 | None:intergenic | 45.0% | |
| GAGCTGTATGCGAAGGTAAT+TGG | + | chr4.4:35277642-35277661 | MS.gene057876:intron | 45.0% | |
| GTTGATTAGTAGGTCCTTCC+CGG | + | chr4.4:35277830-35277849 | MS.gene057876:intron | 45.0% | |
| GTTGTTGCAGTTGAGGTTAC+TGG | + | chr4.4:35276778-35276797 | MS.gene057876:CDS | 45.0% | |
| TCAACTTTGTTCCCGGAAGA+AGG | + | chr4.4:35276812-35276831 | MS.gene057876:CDS | 45.0% | |
| TCCAAAGCACAATGCTTACC+GGG | - | chr4.4:35277851-35277870 | None:intergenic | 45.0% | |
| TCCAATAAAGCCCTGTCTGT+TGG | - | chr4.4:35277597-35277616 | None:intergenic | 45.0% | |
| TCCACCCAATTAGCACATGT+AGG | - | chr4.4:35277919-35277938 | None:intergenic | 45.0% | |
| TCCTACATGTGCTAATTGGG+TGG | + | chr4.4:35277915-35277934 | MS.gene057876:intron | 45.0% | |
| TGCACAACATACCCTTCTTC+CGG | - | chr4.4:35276827-35276846 | None:intergenic | 45.0% | |
| TGTTGCAGTTGAGGTTACTG+GGG | + | chr4.4:35276780-35276799 | MS.gene057876:CDS | 45.0% | |
| ! | TCCAACAGACAGGGCTTTAT+TGG | + | chr4.4:35277593-35277612 | MS.gene057876:CDS | 45.0% |
| !! | AAAAGCGCTTTGTGCCAGTA+CGG | - | chr4.4:35278381-35278400 | None:intergenic | 45.0% |
| AAGCACAATGCTTACCGGGA+AGG | - | chr4.4:35277847-35277866 | None:intergenic | 50.0% | |
| AGAGCACATCCAGAGAGATC+AGG | + | chr4.4:35277310-35277329 | MS.gene057876:CDS | 50.0% | |
| AGCTTACCACTGCCTGTGAA+AGG | + | chr4.4:35277023-35277042 | MS.gene057876:intron | 50.0% | |
| CCAGAGAGATCAGGGTTTGA+TGG | + | chr4.4:35277319-35277338 | MS.gene057876:CDS | 50.0% | |
| CCATCAAACCCTGATCTCTC+TGG | - | chr4.4:35277322-35277341 | None:intergenic | 50.0% | |
| CCCACAGTCAACTTTGTTCC+CGG | + | chr4.4:35276805-35276824 | MS.gene057876:CDS | 50.0% | |
| CCGGGAACAAAGTTGACTGT+GGG | - | chr4.4:35276808-35276827 | None:intergenic | 50.0% | |
| CGGCTTCCTGATGCTAAACA+AGG | + | chr4.4:35276943-35276962 | MS.gene057876:CDS | 50.0% | |
| GAGCACATCCAGAGAGATCA+GGG | + | chr4.4:35277311-35277330 | MS.gene057876:CDS | 50.0% | |
| GCACAACATACCCTTCTTCC+GGG | - | chr4.4:35276826-35276845 | None:intergenic | 50.0% | |
| GTTGCAGTTGAGGTTACTGG+GGG | + | chr4.4:35276781-35276800 | MS.gene057876:CDS | 50.0% | |
| TCCGGGAACAAAGTTGACTG+TGG | - | chr4.4:35276809-35276828 | None:intergenic | 50.0% | |
| ! | TCCCGGTAAGCATTGTGCTT+TGG | + | chr4.4:35277847-35277866 | MS.gene057876:intron | 50.0% |
| !! | GTACTGGCACAAAGCGCTTT+TGG | + | chr4.4:35278380-35278399 | MS.gene057876:CDS | 50.0% |
| ATGCATCCTCATCCTGCCAG+AGG | - | chr4.4:35278271-35278290 | None:intergenic | 55.0% | |
| ATTCTCCCTCTGGCAGGATG+AGG | + | chr4.4:35278262-35278281 | MS.gene057876:intron | 55.0% | |
| CTCAAAGGCAACTGCTCCTG+TGG | + | chr4.4:35278349-35278368 | MS.gene057876:CDS | 55.0% | |
| GGAGCAGTTGCCTTTGAGCT+TGG | - | chr4.4:35278347-35278366 | None:intergenic | 55.0% | |
| TCAGAGGGTCCTCTGTCCAA+GGG | - | chr4.4:35277345-35277364 | None:intergenic | 55.0% | |
| TCCTGTGGATGCAACCGTAC+TGG | + | chr4.4:35278364-35278383 | MS.gene057876:CDS | 55.0% | |
| TGCATCCTCATCCTGCCAGA+GGG | - | chr4.4:35278270-35278289 | None:intergenic | 55.0% | |
| TTCAGAGGGTCCTCTGTCCA+AGG | - | chr4.4:35277346-35277365 | None:intergenic | 55.0% | |
| ! | GATCAGGGTTTGATGGCCCT+TGG | + | chr4.4:35277326-35277345 | MS.gene057876:CDS | 55.0% |
| ! | GTTTGATGGCCCTTGGACAG+AGG | + | chr4.4:35277333-35277352 | MS.gene057876:CDS | 55.0% |
| ! | TGGCTTTGCGCCAAGCTCAA+AGG | + | chr4.4:35278334-35278353 | MS.gene057876:CDS | 55.0% |
| !! | TGCGGGTGTTGTTGCAGTTG+AGG | + | chr4.4:35276771-35276790 | MS.gene057876:CDS | 55.0% |
| ACCGAGGATCACCACTGCAG+CGG | - | chr4.4:35278417-35278436 | None:intergenic | 60.0% | |
| AGTTGTAGCTGCCGCTGCAG+TGG | + | chr4.4:35278403-35278422 | MS.gene057876:CDS | 60.0% | |
| ATCAGGAAGCCGCCCATCTC+TGG | - | chr4.4:35276935-35276954 | None:intergenic | 60.0% | |
| GCCAGTACGGTTGCATCCAC+AGG | - | chr4.4:35278368-35278387 | None:intergenic | 60.0% | |
| ! | ACTGTCTGGGGCACATACGC+TGG | + | chr4.4:35277206-35277225 | MS.gene057876:intron | 60.0% |
| GCCGCTGCAGTGGTGATCCT+CGG | + | chr4.4:35278413-35278432 | MS.gene057876:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 35276769 | 35278469 | 35276769 | ID=MS.gene057876 |
| chr4.4 | mRNA | 35276769 | 35278469 | 35276769 | ID=MS.gene057876.t1;Parent=MS.gene057876 |
| chr4.4 | exon | 35276769 | 35276834 | 35276769 | ID=MS.gene057876.t1.exon1;Parent=MS.gene057876.t1 |
| chr4.4 | CDS | 35276769 | 35276834 | 35276769 | ID=cds.MS.gene057876.t1;Parent=MS.gene057876.t1 |
| chr4.4 | exon | 35276916 | 35276964 | 35276916 | ID=MS.gene057876.t1.exon2;Parent=MS.gene057876.t1 |
| chr4.4 | CDS | 35276916 | 35276964 | 35276916 | ID=cds.MS.gene057876.t1;Parent=MS.gene057876.t1 |
| chr4.4 | exon | 35277146 | 35277174 | 35277146 | ID=MS.gene057876.t1.exon3;Parent=MS.gene057876.t1 |
| chr4.4 | CDS | 35277146 | 35277174 | 35277146 | ID=cds.MS.gene057876.t1;Parent=MS.gene057876.t1 |
| chr4.4 | exon | 35277307 | 35277386 | 35277307 | ID=MS.gene057876.t1.exon4;Parent=MS.gene057876.t1 |
| chr4.4 | CDS | 35277307 | 35277386 | 35277307 | ID=cds.MS.gene057876.t1;Parent=MS.gene057876.t1 |
| chr4.4 | exon | 35277554 | 35277656 | 35277554 | ID=MS.gene057876.t1.exon5;Parent=MS.gene057876.t1 |
| chr4.4 | CDS | 35277554 | 35277656 | 35277554 | ID=cds.MS.gene057876.t1;Parent=MS.gene057876.t1 |
| chr4.4 | exon | 35278278 | 35278469 | 35278278 | ID=MS.gene057876.t1.exon6;Parent=MS.gene057876.t1 |
| chr4.4 | CDS | 35278278 | 35278469 | 35278278 | ID=cds.MS.gene057876.t1;Parent=MS.gene057876.t1 |
| Gene Sequence |
| Protein sequence |
