Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057901.t1 | AET00867.2 | 93.5 | 139 | 9 | 0 | 6 | 144 | 312 | 450 | 1.70E-70 | 275.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057901.t1 | Q84VX0 | 78.7 | 141 | 30 | 0 | 4 | 144 | 303 | 443 | 5.6e-62 | 238.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057901.t1 | G7K4U6 | 93.5 | 139 | 9 | 0 | 6 | 144 | 312 | 450 | 1.2e-70 | 275.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057901 | MS.gene63793 | 0.801633 | 8.21E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057901.t1 | MTR_5g096820 | 79.651 | 172 | 32 | 2 | 6 | 175 | 312 | 482 | 1.29e-87 | 271 |
| MS.gene057901.t1 | MTR_5g096820 | 93.525 | 139 | 9 | 0 | 6 | 144 | 312 | 450 | 9.05e-87 | 271 |
| MS.gene057901.t1 | MTR_7g091880 | 65.333 | 150 | 51 | 1 | 8 | 157 | 304 | 452 | 4.26e-65 | 214 |
| MS.gene057901.t1 | MTR_1g052515 | 64.667 | 150 | 52 | 1 | 8 | 157 | 294 | 442 | 1.52e-63 | 209 |
| MS.gene057901.t1 | MTR_4g115330 | 56.442 | 163 | 68 | 2 | 8 | 168 | 224 | 385 | 2.18e-56 | 189 |
| MS.gene057901.t1 | MTR_4g115330 | 56.442 | 163 | 68 | 2 | 8 | 168 | 349 | 510 | 6.45e-56 | 189 |
| MS.gene057901.t1 | MTR_3g075510 | 47.619 | 147 | 77 | 0 | 8 | 154 | 307 | 453 | 6.73e-47 | 163 |
| MS.gene057901.t1 | MTR_3g075510 | 47.619 | 147 | 77 | 0 | 8 | 154 | 307 | 453 | 1.96e-46 | 163 |
| MS.gene057901.t1 | MTR_3g077280 | 44.667 | 150 | 81 | 1 | 8 | 157 | 334 | 481 | 8.28e-35 | 130 |
| MS.gene057901.t1 | MTR_4g105250 | 39.344 | 183 | 93 | 3 | 8 | 190 | 326 | 490 | 1.35e-32 | 124 |
| MS.gene057901.t1 | MTR_6g004880 | 35.789 | 190 | 104 | 3 | 1 | 190 | 328 | 499 | 2.68e-30 | 117 |
| MS.gene057901.t1 | MTR_7g106910 | 35.714 | 182 | 98 | 2 | 8 | 189 | 408 | 570 | 3.68e-29 | 114 |
| MS.gene057901.t1 | MTR_1g097450 | 40.667 | 150 | 86 | 1 | 8 | 157 | 403 | 549 | 6.86e-29 | 113 |
| MS.gene057901.t1 | MTR_8g088020 | 38.667 | 150 | 89 | 1 | 8 | 157 | 399 | 545 | 1.90e-27 | 109 |
| MS.gene057901.t1 | MTR_3g080090 | 93.478 | 46 | 3 | 0 | 142 | 187 | 241 | 286 | 2.73e-22 | 93.6 |
| MS.gene057901.t1 | MTR_2g064405 | 82.222 | 45 | 8 | 0 | 142 | 186 | 158 | 202 | 7.38e-20 | 86.3 |
| MS.gene057901.t1 | MTR_2g064405 | 82.222 | 45 | 8 | 0 | 142 | 186 | 235 | 279 | 1.30e-19 | 86.3 |
| MS.gene057901.t1 | MTR_8g046550 | 77.778 | 45 | 10 | 0 | 142 | 186 | 236 | 280 | 5.02e-18 | 81.6 |
| MS.gene057901.t1 | MTR_3g062610 | 61.364 | 44 | 17 | 0 | 144 | 187 | 242 | 285 | 7.24e-13 | 66.6 |
| MS.gene057901.t1 | MTR_3g062610 | 61.364 | 44 | 17 | 0 | 144 | 187 | 242 | 285 | 8.02e-13 | 67.0 |
| MS.gene057901.t1 | MTR_5g075680 | 62.791 | 43 | 16 | 0 | 145 | 187 | 183 | 225 | 2.72e-11 | 62.4 |
| MS.gene057901.t1 | MTR_5g075680 | 62.791 | 43 | 16 | 0 | 145 | 187 | 236 | 278 | 2.81e-11 | 62.4 |
| MS.gene057901.t1 | MTR_5g075680 | 62.791 | 43 | 16 | 0 | 145 | 187 | 236 | 278 | 3.26e-11 | 62.0 |
| MS.gene057901.t1 | MTR_7g022890 | 64.444 | 45 | 16 | 0 | 143 | 187 | 189 | 233 | 3.54e-11 | 62.0 |
| MS.gene057901.t1 | MTR_7g022890 | 64.444 | 45 | 16 | 0 | 143 | 187 | 242 | 286 | 3.80e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057901.t1 | AT3G57520 | 63.804 | 163 | 56 | 2 | 8 | 168 | 303 | 464 | 3.09e-66 | 213 |
| MS.gene057901.t1 | AT3G57520 | 63.804 | 163 | 56 | 2 | 8 | 168 | 303 | 464 | 1.32e-65 | 214 |
| MS.gene057901.t1 | AT3G57520 | 63.804 | 163 | 56 | 2 | 8 | 168 | 303 | 464 | 5.13e-65 | 214 |
| MS.gene057901.t1 | AT1G55740 | 79.710 | 138 | 28 | 0 | 8 | 145 | 307 | 444 | 2.54e-64 | 212 |
| MS.gene057901.t1 | AT5G20250 | 53.892 | 167 | 70 | 3 | 4 | 168 | 301 | 462 | 8.11e-49 | 170 |
| MS.gene057901.t1 | AT5G20250 | 53.892 | 167 | 70 | 3 | 4 | 168 | 301 | 462 | 8.11e-49 | 170 |
| MS.gene057901.t1 | AT5G20250 | 53.892 | 167 | 70 | 3 | 4 | 168 | 301 | 462 | 8.11e-49 | 170 |
| MS.gene057901.t1 | AT5G20250 | 53.892 | 167 | 70 | 3 | 4 | 168 | 396 | 557 | 1.47e-48 | 169 |
| MS.gene057901.t1 | AT5G40390 | 38.251 | 183 | 95 | 3 | 8 | 190 | 333 | 497 | 2.49e-31 | 120 |
| MS.gene057901.t1 | AT4G01970 | 35.227 | 176 | 92 | 2 | 8 | 183 | 417 | 570 | 1.80e-28 | 112 |
| MS.gene057901.t1 | AT4G01970 | 35.227 | 176 | 92 | 2 | 8 | 183 | 464 | 617 | 1.84e-28 | 112 |
| MS.gene057901.t1 | AT1G16310 | 81.818 | 44 | 8 | 0 | 143 | 186 | 159 | 202 | 5.61e-19 | 83.6 |
| MS.gene057901.t1 | AT1G79520 | 81.818 | 44 | 8 | 0 | 143 | 186 | 192 | 235 | 9.36e-19 | 83.6 |
| MS.gene057901.t1 | AT1G79520 | 81.818 | 44 | 8 | 0 | 143 | 186 | 192 | 235 | 9.36e-19 | 83.6 |
| MS.gene057901.t1 | AT1G16310 | 81.818 | 44 | 8 | 0 | 143 | 186 | 272 | 315 | 1.62e-18 | 83.6 |
| MS.gene057901.t1 | AT1G79520 | 81.818 | 44 | 8 | 0 | 143 | 186 | 245 | 288 | 1.67e-18 | 83.2 |
| MS.gene057901.t1 | AT1G79520 | 81.818 | 44 | 8 | 0 | 143 | 186 | 257 | 300 | 1.79e-18 | 83.2 |
| MS.gene057901.t1 | AT3G58060 | 65.909 | 44 | 15 | 0 | 144 | 187 | 248 | 291 | 1.11e-12 | 66.6 |
| MS.gene057901.t1 | AT3G58060 | 65.909 | 44 | 15 | 0 | 144 | 187 | 248 | 291 | 1.11e-12 | 66.6 |
| MS.gene057901.t1 | AT2G39450 | 62.222 | 45 | 17 | 0 | 143 | 187 | 236 | 280 | 4.58e-11 | 61.6 |
Find 64 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGATACCATTGCAATTAA+TGG | 0.179680 | 3.3:+15561410 | MS.gene057901:CDS |
| ACTGGTGGCTTGACCCTCTT+GGG | 0.280026 | 3.3:+15562880 | MS.gene057901:CDS |
| TCTAGGAACTTTCCTGATAA+TGG | 0.299510 | 3.3:+15561617 | MS.gene057901:CDS |
| TAGATACCATTGCAATTAAT+GGG | 0.316835 | 3.3:+15561411 | MS.gene057901:CDS |
| TACTGGTGGCTTGACCCTCT+TGG | 0.317261 | 3.3:+15562879 | MS.gene057901:CDS |
| CAACAAATGATTCCATTATC+AGG | 0.335000 | 3.3:-15561629 | None:intergenic |
| GGCATGCAATAACAGGATAT+TGG | 0.349828 | 3.3:+15561285 | MS.gene057901:CDS |
| GCATGCAATAACAGGATATT+GGG | 0.366085 | 3.3:+15561286 | MS.gene057901:CDS |
| TGACCCTCTTGGGGCCATCT+TGG | 0.367170 | 3.3:+15562890 | MS.gene057901:CDS |
| ACCATTGCAATTAATGGGCT+TGG | 0.383605 | 3.3:+15561416 | MS.gene057901:CDS |
| CTAGCATCGGTTGGTATTGA+TGG | 0.386734 | 3.3:+15561491 | MS.gene057901:CDS |
| TATGAGTGGGTTGTGTTATG+AGG | 0.401994 | 3.3:+15563545 | MS.gene057901:CDS |
| TTGACTCCAGGAGATGAGAT+AGG | 0.414473 | 3.3:-15561365 | None:intergenic |
| GATGTCATTACAAACTCAAT+TGG | 0.418971 | 3.3:+15562825 | MS.gene057901:CDS |
| TGCAGTTTGAAGGTTGCATT+AGG | 0.426168 | 3.3:+15563383 | MS.gene057901:intron |
| GCTTTCCCTATCTCATCTCC+TGG | 0.431454 | 3.3:+15561359 | MS.gene057901:CDS |
| TTGTAATGACATCAAAGAAA+TGG | 0.448824 | 3.3:-15562815 | None:intergenic |
| GGTGTTAAACCTGGGATTAG+TGG | 0.464175 | 3.3:+15561311 | MS.gene057901:CDS |
| ACAATACAGACGAATTGTAT+AGG | 0.465048 | 3.3:+15561660 | MS.gene057901:CDS |
| GGTTGGTTGGACTTGACTCC+AGG | 0.465627 | 3.3:-15561377 | None:intergenic |
| ATTATGATGTTGCAGTTTGA+AGG | 0.467572 | 3.3:+15563373 | MS.gene057901:intron |
| TATGTGTGGCATGCAATAAC+AGG | 0.475401 | 3.3:+15561278 | MS.gene057901:CDS |
| TAAAGCTTCATCTGGTTGGT+TGG | 0.478431 | 3.3:-15561390 | None:intergenic |
| CATTGGAGGCGTCGATCTCT+AGG | 0.481863 | 3.3:+15561600 | MS.gene057901:CDS |
| ATCTTTGAAACTCTTGAAGC+AGG | 0.487374 | 3.3:+15561536 | MS.gene057901:CDS |
| ATGGTATCTAAAGCTTCATC+TGG | 0.492345 | 3.3:-15561398 | None:intergenic |
| ATTCACTGACATGGAAAAGT+TGG | 0.494023 | 3.3:+15561006 | None:intergenic |
| ATTAGGATATTGCAAGTCAA+TGG | 0.496077 | 3.3:+15563400 | MS.gene057901:CDS |
| TGCTAGCCATCAAATTCTAC+TGG | 0.510852 | 3.3:+15562862 | MS.gene057901:CDS |
| ACTTGCAAGGAAATATCATC+AGG | 0.521049 | 3.3:+15561577 | MS.gene057901:CDS |
| AAGCCACCAGTAGAATTTGA+TGG | 0.521659 | 3.3:-15562868 | None:intergenic |
| TATCTAAAGCTTCATCTGGT+TGG | 0.526446 | 3.3:-15561394 | None:intergenic |
| GAAACTCTTGAAGCAGGACA+TGG | 0.535949 | 3.3:+15561542 | MS.gene057901:CDS |
| TATTGGGGTGGTGTTAAACC+TGG | 0.537243 | 3.3:+15561302 | MS.gene057901:CDS |
| TGTTCCATGCCACTAATCCC+AGG | 0.544946 | 3.3:-15561320 | None:intergenic |
| CACTCATATCTAGCATCGGT+TGG | 0.551425 | 3.3:+15561482 | MS.gene057901:CDS |
| ATGAGTGGGTTGTGTTATGA+GGG | 0.554083 | 3.3:+15563546 | MS.gene057901:CDS |
| GCCAAGCCCATTAATTGCAA+TGG | 0.564685 | 3.3:-15561417 | None:intergenic |
| AAAGAAATGGTCTTGTGCAT+AGG | 0.564725 | 3.3:-15562802 | None:intergenic |
| GAAATATCATCAGGCATTGG+AGG | 0.567143 | 3.3:+15561586 | MS.gene057901:CDS |
| AGGTTGCAGGATTATATGAG+TGG | 0.571475 | 3.3:+15563531 | MS.gene057901:intron |
| TGGAGATAAATATGCAGCAA+AGG | 0.571908 | 3.3:+15563420 | MS.gene057901:CDS |
| TGACTCCAGGAGATGAGATA+GGG | 0.578809 | 3.3:-15561364 | None:intergenic |
| TTTATAGGCATGGGTATGTG+TGG | 0.593071 | 3.3:+15561264 | MS.gene057901:intron |
| GGTTGCAGGATTATATGAGT+GGG | 0.596547 | 3.3:+15563532 | MS.gene057901:intron |
| TGAAGCAGGACATGGTGGGA+GGG | 0.597215 | 3.3:+15561550 | MS.gene057901:CDS |
| TTGAAGCAGGACATGGTGGG+AGG | 0.602745 | 3.3:+15561549 | MS.gene057901:CDS |
| TAAACCTGGGATTAGTGGCA+TGG | 0.606597 | 3.3:+15561316 | MS.gene057901:CDS |
| CTGGTGGCTTGACCCTCTTG+GGG | 0.617682 | 3.3:+15562881 | MS.gene057901:CDS |
| ATTGGGGTGGTGTTAAACCT+GGG | 0.617867 | 3.3:+15561303 | MS.gene057901:CDS |
| ACTCTTGAAGCAGGACATGG+TGG | 0.623127 | 3.3:+15561545 | MS.gene057901:CDS |
| CTCTTGAAGCAGGACATGGT+GGG | 0.631869 | 3.3:+15561546 | MS.gene057901:CDS |
| AAGGAAATATCATCAGGCAT+TGG | 0.632296 | 3.3:+15561583 | MS.gene057901:CDS |
| ACTCCACTCATATCTAGCAT+CGG | 0.632371 | 3.3:+15561478 | MS.gene057901:CDS |
| GTGGGAGGGTGAAACTTGCA+AGG | 0.634046 | 3.3:+15561564 | MS.gene057901:CDS |
| AACAGAAGGACATACCAAGA+TGG | 0.641320 | 3.3:-15562904 | None:intergenic |
| TAGCCATCAAATTCTACTGG+TGG | 0.641479 | 3.3:+15562865 | MS.gene057901:CDS |
| CAACCGATGCTAGATATGAG+TGG | 0.643698 | 3.3:-15561481 | None:intergenic |
| TTTGATGGCTAGCACTGTCG+TGG | 0.648728 | 3.3:-15562853 | None:intergenic |
| AAACTTTCTCAGGATTCACA+AGG | 0.659818 | 3.3:-15561439 | None:intergenic |
| CATGCAATAACAGGATATTG+GGG | 0.661162 | 3.3:+15561287 | MS.gene057901:CDS |
| GCAATAACAGGATATTGGGG+TGG | 0.676062 | 3.3:+15561290 | MS.gene057901:CDS |
| ATACCAAGATGGCCCCAAGA+GGG | 0.693479 | 3.3:-15562893 | None:intergenic |
| CATACCAAGATGGCCCCAAG+AGG | 0.701586 | 3.3:-15562894 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCAATTTTATTTATTTAC+AGG | + | chr3.3:15562659-15562678 | MS.gene057901:intron | 10.0% |
| !! | CCTTATTATATATAAATCTA+GGG | - | chr3.3:15561731-15561750 | None:intergenic | 15.0% |
| !! | CTTATAATATAAATGCTATT+AGG | + | chr3.3:15562255-15562274 | MS.gene057901:intron | 15.0% |
| !! | GTTTACAAAATATATTTACA+GGG | + | chr3.3:15562315-15562334 | MS.gene057901:intron | 15.0% |
| !! | TAAACCAAAAGTTATTAAAA+TGG | - | chr3.3:15562300-15562319 | None:intergenic | 15.0% |
| !! | TCCTTATTATATATAAATCT+AGG | - | chr3.3:15561732-15561751 | None:intergenic | 15.0% |
| !! | TGCATAAATTAATTTCAAAT+AGG | - | chr3.3:15563204-15563223 | None:intergenic | 15.0% |
| !! | TTTACAAAATATATTTACAG+GGG | + | chr3.3:15562316-15562335 | MS.gene057901:intron | 15.0% |
| !!! | AATATTATGAAAATTAGCTT+AGG | - | chr3.3:15562155-15562174 | None:intergenic | 15.0% |
| !! | AAAAATGATGTAAAGAAATC+AGG | - | chr3.3:15563509-15563528 | None:intergenic | 20.0% |
| !! | AAATACTATTTGAATCAACA+AGG | + | chr3.3:15562379-15562398 | MS.gene057901:intron | 20.0% |
| !! | AATACTATTTGAATCAACAA+GGG | + | chr3.3:15562380-15562399 | MS.gene057901:intron | 20.0% |
| !! | ATAACTCAAACAAATAATCA+AGG | - | chr3.3:15563265-15563284 | None:intergenic | 20.0% |
| !! | CATCATAATCATTATTCATT+AGG | - | chr3.3:15563362-15563381 | None:intergenic | 20.0% |
| !! | CCCTAGATTTATATATAATA+AGG | + | chr3.3:15561728-15561747 | MS.gene057901:intron | 20.0% |
| !! | GGTTTACAAAATATATTTAC+AGG | + | chr3.3:15562314-15562333 | MS.gene057901:intron | 20.0% |
| !! | TAACTCAAACAAATAATCAA+GGG | - | chr3.3:15563264-15563283 | None:intergenic | 20.0% |
| !! | TATCTTATTCGTGTTAAAAA+AGG | - | chr3.3:15562525-15562544 | None:intergenic | 20.0% |
| !! | TTAGACAATGGTATTTAAAT+AGG | - | chr3.3:15562584-15562603 | None:intergenic | 20.0% |
| !! | TTATAGAATCTATTAGACAA+TGG | - | chr3.3:15562596-15562615 | None:intergenic | 20.0% |
| !!! | CTGTTAACTTCAAAAATTTT+AGG | + | chr3.3:15563126-15563145 | MS.gene057901:intron | 20.0% |
| !!! | TAAAAGGTATTATATCGAAA+TGG | + | chr3.3:15562426-15562445 | MS.gene057901:intron | 20.0% |
| !!! | TCATCCATTTTAATAACTTT+TGG | + | chr3.3:15562293-15562312 | MS.gene057901:intron | 20.0% |
| !!! | TTTCTTTACATCATTTTTTC+AGG | + | chr3.3:15563511-15563530 | MS.gene057901:intron | 20.0% |
| !!! | TTTTCGTCTTTTTTGTTTAT+AGG | + | chr3.3:15561249-15561268 | MS.gene057901:intron | 20.0% |
| ! | AACTATGATCAATACCTTAT+TGG | + | chr3.3:15562080-15562099 | MS.gene057901:intron | 25.0% |
| ! | ATAATTGAACATGTCACATT+AGG | + | chr3.3:15563158-15563177 | MS.gene057901:intron | 25.0% |
| ! | ATGTGACATGTTCAATTATA+TGG | - | chr3.3:15563157-15563176 | None:intergenic | 25.0% |
| ! | CATATTTGATATTCATACTC+TGG | + | chr3.3:15563327-15563346 | MS.gene057901:intron | 25.0% |
| ! | GATATTTATGAGTTTAGATG+TGG | + | chr3.3:15563444-15563463 | MS.gene057901:intron | 25.0% |
| ! | TAAAAGTGAAAAACTTTCTC+AGG | - | chr3.3:15561452-15561471 | None:intergenic | 25.0% |
| ! | TAGATACCATTGCAATTAAT+GGG | + | chr3.3:15561411-15561430 | MS.gene057901:CDS | 25.0% |
| ! | TGTCCTAGTTAAAAAACTAT+TGG | - | chr3.3:15562481-15562500 | None:intergenic | 25.0% |
| ! | TTAGATACCATTGCAATTAA+TGG | + | chr3.3:15561410-15561429 | MS.gene057901:CDS | 25.0% |
| ! | TTCCTATTTCACAAGTAATA+AGG | + | chr3.3:15562994-15563013 | MS.gene057901:intron | 25.0% |
| ! | TTGTAATGACATCAAAGAAA+TGG | - | chr3.3:15562818-15562837 | None:intergenic | 25.0% |
| !! | ACTTTTATCTGCAAAATTCA+TGG | - | chr3.3:15561054-15561073 | None:intergenic | 25.0% |
| !! | TAGGTTTTTGATGTTTGAAT+TGG | + | chr3.3:15563067-15563086 | MS.gene057901:intron | 25.0% |
| !! | TTGCAGATAAAAGTATACAT+GGG | + | chr3.3:15561060-15561079 | MS.gene057901:intron | 25.0% |
| !! | TTTGCAGATAAAAGTATACA+TGG | + | chr3.3:15561059-15561078 | MS.gene057901:intron | 25.0% |
| !! | TTTTTCACCACAAAAAAACA+TGG | + | chr3.3:15562944-15562963 | MS.gene057901:intron | 25.0% |
| !!! | ATAAGGTATTGATCATAGTT+TGG | - | chr3.3:15562080-15562099 | None:intergenic | 25.0% |
| !!! | TCTTTTTTGTTTATAGGCAT+GGG | + | chr3.3:15561255-15561274 | MS.gene057901:intron | 25.0% |
| AAAGTGGATGATAGGAATTA+TGG | + | chr3.3:15562710-15562729 | MS.gene057901:intron | 30.0% | |
| ACAATACAGACGAATTGTAT+AGG | + | chr3.3:15561660-15561679 | MS.gene057901:CDS | 30.0% | |
| ATTAGGATATTGCAAGTCAA+TGG | + | chr3.3:15563400-15563419 | MS.gene057901:CDS | 30.0% | |
| ATTATGATGTTGCAGTTTGA+AGG | + | chr3.3:15563373-15563392 | MS.gene057901:intron | 30.0% | |
| CAACAAATGATTCCATTATC+AGG | - | chr3.3:15561632-15561651 | None:intergenic | 30.0% | |
| CGTAAAGGTAGAGAAATAAA+AGG | + | chr3.3:15562410-15562429 | MS.gene057901:intron | 30.0% | |
| GATACATGAATACATAGAAG+AGG | + | chr3.3:15561109-15561128 | MS.gene057901:intron | 30.0% | |
| GATGTCATTACAAACTCAAT+TGG | + | chr3.3:15562825-15562844 | MS.gene057901:CDS | 30.0% | |
| GTAAAGAAATCAGGAAAATG+AGG | - | chr3.3:15563500-15563519 | None:intergenic | 30.0% | |
| GTTTCATGTAAGAGAACATA+GGG | + | chr3.3:15561916-15561935 | MS.gene057901:intron | 30.0% | |
| TCTTGTCTGGATTTATACTT+TGG | + | chr3.3:15562030-15562049 | MS.gene057901:intron | 30.0% | |
| TGTTTCATGTAAGAGAACAT+AGG | + | chr3.3:15561915-15561934 | MS.gene057901:intron | 30.0% | |
| TTCCATTCAAAGTAGATCTT+TGG | + | chr3.3:15561971-15561990 | MS.gene057901:intron | 30.0% | |
| ! | GCTTACAATACTATTTTCCT+TGG | + | chr3.3:15561866-15561885 | MS.gene057901:intron | 30.0% |
| ! | TGCCTTATTACTTGTGAAAT+AGG | - | chr3.3:15562999-15563018 | None:intergenic | 30.0% |
| ! | TTGATGTTTGAATTGGTTCT+TGG | + | chr3.3:15563074-15563093 | MS.gene057901:intron | 30.0% |
| !! | GCTTTGAGATCATAACTAAT+AGG | + | chr3.3:15563286-15563305 | MS.gene057901:intron | 30.0% |
| !!! | GCTCCAATAGTTTTTTAACT+AGG | + | chr3.3:15562475-15562494 | MS.gene057901:intron | 30.0% |
| !!! | GTCTTTTTTGTTTATAGGCA+TGG | + | chr3.3:15561254-15561273 | MS.gene057901:intron | 30.0% |
| AAACTTTCTCAGGATTCACA+AGG | - | chr3.3:15561442-15561461 | None:intergenic | 35.0% | |
| AACAAGGGAAATCATCGTAA+AGG | + | chr3.3:15562395-15562414 | MS.gene057901:intron | 35.0% | |
| AAGGAAATATCATCAGGCAT+TGG | + | chr3.3:15561583-15561602 | MS.gene057901:CDS | 35.0% | |
| ACAAATAATCAAGGGCTTTG+TGG | - | chr3.3:15563256-15563275 | None:intergenic | 35.0% | |
| ACAGGCACAGTTGTAAAAAT+TGG | + | chr3.3:15562735-15562754 | MS.gene057901:intron | 35.0% | |
| ACATGAAACATATCCCAATC+TGG | - | chr3.3:15561905-15561924 | None:intergenic | 35.0% | |
| ACTTGCAAGGAAATATCATC+AGG | + | chr3.3:15561577-15561596 | MS.gene057901:CDS | 35.0% | |
| AGCCAAAGATCTACTTTGAA+TGG | - | chr3.3:15561976-15561995 | None:intergenic | 35.0% | |
| AGTTGTATTTGCTTCTGTCT+TGG | + | chr3.3:15562341-15562360 | MS.gene057901:intron | 35.0% | |
| ATCAACTTAGGACTCAATCT+TGG | + | chr3.3:15562004-15562023 | MS.gene057901:intron | 35.0% | |
| ATGATAGGAATTATGGTGAC+AGG | + | chr3.3:15562717-15562736 | MS.gene057901:intron | 35.0% | |
| ATTTACAGGCTTAACCTGAT+AGG | + | chr3.3:15562673-15562692 | MS.gene057901:intron | 35.0% | |
| CAGGCACAGTTGTAAAAATT+GGG | + | chr3.3:15562736-15562755 | MS.gene057901:intron | 35.0% | |
| CATGCAATAACAGGATATTG+GGG | + | chr3.3:15561287-15561306 | MS.gene057901:CDS | 35.0% | |
| GAATACATAGAAGAGGCTAT+TGG | + | chr3.3:15561116-15561135 | MS.gene057901:intron | 35.0% | |
| GCATGCAATAACAGGATATT+GGG | + | chr3.3:15561286-15561305 | MS.gene057901:CDS | 35.0% | |
| GTGAAAGAAAAGTGGATGAT+AGG | + | chr3.3:15562702-15562721 | MS.gene057901:intron | 35.0% | |
| TACAGACGAATTGTATAGGT+AGG | + | chr3.3:15561664-15561683 | MS.gene057901:intron | 35.0% | |
| TCTAGGAACTTTCCTGATAA+TGG | + | chr3.3:15561617-15561636 | MS.gene057901:CDS | 35.0% | |
| TGAATTTATGCAGCCAGATT+GGG | + | chr3.3:15561889-15561908 | MS.gene057901:intron | 35.0% | |
| TGGAGATAAATATGCAGCAA+AGG | + | chr3.3:15563420-15563439 | MS.gene057901:CDS | 35.0% | |
| TTAGAGCTTCAGATGATTTG+TGG | + | chr3.3:15561801-15561820 | MS.gene057901:intron | 35.0% | |
| TTCATGTATCATTCGCAATG+TGG | - | chr3.3:15561099-15561118 | None:intergenic | 35.0% | |
| TTCTGCAACATAGTCATAGT+AGG | + | chr3.3:15563048-15563067 | MS.gene057901:intron | 35.0% | |
| TTTACAGGCTTAACCTGATA+GGG | + | chr3.3:15562674-15562693 | MS.gene057901:intron | 35.0% | |
| ! | AGATGTGGTGTTAAAATGTC+TGG | + | chr3.3:15563459-15563478 | MS.gene057901:intron | 35.0% |
| ! | ATGGTATCTAAAGCTTCATC+TGG | - | chr3.3:15561401-15561420 | None:intergenic | 35.0% |
| ! | CAGATAAAAGTATACATGGG+AGG | + | chr3.3:15561063-15561082 | MS.gene057901:intron | 35.0% |
| ! | TATCTAAAGCTTCATCTGGT+TGG | - | chr3.3:15561397-15561416 | None:intergenic | 35.0% |
| !! | AAAGAAATGGTCTTGTGCAT+AGG | - | chr3.3:15562805-15562824 | None:intergenic | 35.0% |
| !! | ATCATCCACTTTTCTTTCAC+AGG | - | chr3.3:15562702-15562721 | None:intergenic | 35.0% |
| !! | ATCTTTGAAACTCTTGAAGC+AGG | + | chr3.3:15561536-15561555 | MS.gene057901:CDS | 35.0% |
| !!! | ACATCATTTTTTCAGGTTGC+AGG | + | chr3.3:15563518-15563537 | MS.gene057901:intron | 35.0% |
| !!! | AGATGTGCCATGTTTTTTTG+TGG | - | chr3.3:15562954-15562973 | None:intergenic | 35.0% |
| AAAAAGGCTACCATGCAAAG+TGG | - | chr3.3:15562509-15562528 | None:intergenic | 40.0% | |
| AACAGAAGGACATACCAAGA+TGG | - | chr3.3:15562907-15562926 | None:intergenic | 40.0% | |
| AAGCCACCAGTAGAATTTGA+TGG | - | chr3.3:15562871-15562890 | None:intergenic | 40.0% | |
| ACTCCACTCATATCTAGCAT+CGG | + | chr3.3:15561478-15561497 | MS.gene057901:CDS | 40.0% | |
| AGGTTGCAGGATTATATGAG+TGG | + | chr3.3:15563531-15563550 | MS.gene057901:intron | 40.0% | |
| ATGTGAATTGTGTGAGATGC+AGG | - | chr3.3:15561836-15561855 | None:intergenic | 40.0% | |
| GGACAATATACCACTTTGCA+TGG | + | chr3.3:15562496-15562515 | MS.gene057901:intron | 40.0% | |
| GGCATGCAATAACAGGATAT+TGG | + | chr3.3:15561285-15561304 | MS.gene057901:CDS | 40.0% | |
| GGTTGCAGGATTATATGAGT+GGG | + | chr3.3:15563532-15563551 | MS.gene057901:intron | 40.0% | |
| GTAAGAGAACATAGGGAACA+TGG | + | chr3.3:15561923-15561942 | MS.gene057901:intron | 40.0% | |
| GTGAATTTATGCAGCCAGAT+TGG | + | chr3.3:15561888-15561907 | MS.gene057901:intron | 40.0% | |
| TAAAGCTTCATCTGGTTGGT+TGG | - | chr3.3:15561393-15561412 | None:intergenic | 40.0% | |
| TAGCCATCAAATTCTACTGG+TGG | + | chr3.3:15562865-15562884 | MS.gene057901:CDS | 40.0% | |
| TATGTGTGGCATGCAATAAC+AGG | + | chr3.3:15561278-15561297 | MS.gene057901:CDS | 40.0% | |
| TCAATCTTGGATCTCTTGTC+TGG | + | chr3.3:15562017-15562036 | MS.gene057901:intron | 40.0% | |
| TGCAGTTTGAAGGTTGCATT+AGG | + | chr3.3:15563383-15563402 | MS.gene057901:intron | 40.0% | |
| TGCTAGCCATCAAATTCTAC+TGG | + | chr3.3:15562862-15562881 | MS.gene057901:CDS | 40.0% | |
| TGTGAATTGTGTGAGATGCA+GGG | - | chr3.3:15561835-15561854 | None:intergenic | 40.0% | |
| TTTATAGGCATGGGTATGTG+TGG | + | chr3.3:15561264-15561283 | MS.gene057901:intron | 40.0% | |
| ! | CTTTTACCACAGGTTGCATA+CGG | - | chr3.3:15562112-15562131 | None:intergenic | 40.0% |
| ! | GGTGTTAAAATGTCTGGCTT+TGG | + | chr3.3:15563465-15563484 | MS.gene057901:intron | 40.0% |
| ! | TAATCAAGGGCTTTGTGGTA+TGG | - | chr3.3:15563251-15563270 | None:intergenic | 40.0% |
| ! | TTGATGCAGTTCAAAGCGTT+CGG | + | chr3.3:15561772-15561791 | MS.gene057901:intron | 40.0% |
| !! | ACCATTGCAATTAATGGGCT+TGG | + | chr3.3:15561416-15561435 | MS.gene057901:CDS | 40.0% |
| !! | CTTAGGTGTGTTCTAAGAGA+AGG | - | chr3.3:15562138-15562157 | None:intergenic | 40.0% |
| !! | GAAATATCATCAGGCATTGG+AGG | + | chr3.3:15561586-15561605 | MS.gene057901:CDS | 40.0% |
| ATTATTGCATCGCTGCATCG+TGG | + | chr3.3:15562544-15562563 | MS.gene057901:intron | 45.0% | |
| CAACCGATGCTAGATATGAG+TGG | - | chr3.3:15561484-15561503 | None:intergenic | 45.0% | |
| CTGGCTGCATAAATTCACCA+AGG | - | chr3.3:15561886-15561905 | None:intergenic | 45.0% | |
| GAAACTCTTGAAGCAGGACA+TGG | + | chr3.3:15561542-15561561 | MS.gene057901:CDS | 45.0% | |
| GAATGCGCTCTATGAACAGA+AGG | - | chr3.3:15562921-15562940 | None:intergenic | 45.0% | |
| GCAATAACAGGATATTGGGG+TGG | + | chr3.3:15561290-15561309 | MS.gene057901:CDS | 45.0% | |
| GCATACGGTTCTTGCCAATA+AGG | - | chr3.3:15562097-15562116 | None:intergenic | 45.0% | |
| GCCAAGCCCATTAATTGCAA+TGG | - | chr3.3:15561420-15561439 | None:intergenic | 45.0% | |
| GGCTCATGACATATTGTTGC+AGG | + | chr3.3:15562757-15562776 | MS.gene057901:intron | 45.0% | |
| GGCTGTGATTGCATCAACTT+AGG | + | chr3.3:15561992-15562011 | MS.gene057901:intron | 45.0% | |
| GGGATCCTGTGAAAGAAAAG+TGG | + | chr3.3:15562694-15562713 | MS.gene057901:intron | 45.0% | |
| GGTGTTAAACCTGGGATTAG+TGG | + | chr3.3:15561311-15561330 | MS.gene057901:CDS | 45.0% | |
| TCTTTCACAGGATCCCTATC+AGG | - | chr3.3:15562690-15562709 | None:intergenic | 45.0% | |
| TGACTCCAGGAGATGAGATA+GGG | - | chr3.3:15561367-15561386 | None:intergenic | 45.0% | |
| TTATTGCATCGCTGCATCGT+GGG | + | chr3.3:15562545-15562564 | MS.gene057901:intron | 45.0% | |
| TTGACTCCAGGAGATGAGAT+AGG | - | chr3.3:15561368-15561387 | None:intergenic | 45.0% | |
| ! | ATTGGGGTGGTGTTAAACCT+GGG | + | chr3.3:15561303-15561322 | MS.gene057901:CDS | 45.0% |
| ! | GAGAAGGAAGCTTTTACCAC+AGG | - | chr3.3:15562122-15562141 | None:intergenic | 45.0% |
| ! | TAAACCTGGGATTAGTGGCA+TGG | + | chr3.3:15561316-15561335 | MS.gene057901:CDS | 45.0% |
| ! | TATTGGGGTGGTGTTAAACC+TGG | + | chr3.3:15561302-15561321 | MS.gene057901:CDS | 45.0% |
| !! | CACTCATATCTAGCATCGGT+TGG | + | chr3.3:15561482-15561501 | MS.gene057901:CDS | 45.0% |
| !! | CTAGCATCGGTTGGTATTGA+TGG | + | chr3.3:15561491-15561510 | MS.gene057901:CDS | 45.0% |
| !! | TAAATAAATAAAATTGAAAT+AGG | - | chr3.3:15562658-15562677 | None:intergenic | 5.0% |
| !!! | TGTTTTTTTTTTTTATATAT+TGG | - | chr3.3:15561144-15561163 | None:intergenic | 5.0% |
| ACTCTTGAAGCAGGACATGG+TGG | + | chr3.3:15561545-15561564 | MS.gene057901:CDS | 50.0% | |
| ATACCAAGATGGCCCCAAGA+GGG | - | chr3.3:15562896-15562915 | None:intergenic | 50.0% | |
| CAAGAACCGTATGCAACCTG+TGG | + | chr3.3:15562103-15562122 | MS.gene057901:intron | 50.0% | |
| CTCTTGAAGCAGGACATGGT+GGG | + | chr3.3:15561546-15561565 | MS.gene057901:CDS | 50.0% | |
| GCTTCTGTCTTGGCAACTCT+TGG | + | chr3.3:15562351-15562370 | MS.gene057901:intron | 50.0% | |
| GCTTTCCCTATCTCATCTCC+TGG | + | chr3.3:15561359-15561378 | MS.gene057901:CDS | 50.0% | |
| TGTTCCATGCCACTAATCCC+AGG | - | chr3.3:15561323-15561342 | None:intergenic | 50.0% | |
| ! | TTTGATGGCTAGCACTGTCG+TGG | - | chr3.3:15562856-15562875 | None:intergenic | 50.0% |
| ACTGGTGGCTTGACCCTCTT+GGG | + | chr3.3:15562880-15562899 | MS.gene057901:CDS | 55.0% | |
| CATACCAAGATGGCCCCAAG+AGG | - | chr3.3:15562897-15562916 | None:intergenic | 55.0% | |
| GTGGGAGGGTGAAACTTGCA+AGG | + | chr3.3:15561564-15561583 | MS.gene057901:CDS | 55.0% | |
| GTGTGAGATGCAGGGTCTCT+TGG | - | chr3.3:15561827-15561846 | None:intergenic | 55.0% | |
| TACTGGTGGCTTGACCCTCT+TGG | + | chr3.3:15562879-15562898 | MS.gene057901:CDS | 55.0% | |
| ! | GGTTGGTTGGACTTGACTCC+AGG | - | chr3.3:15561380-15561399 | None:intergenic | 55.0% |
| ! | TGAAGCAGGACATGGTGGGA+GGG | + | chr3.3:15561550-15561569 | MS.gene057901:CDS | 55.0% |
| ! | TTGAAGCAGGACATGGTGGG+AGG | + | chr3.3:15561549-15561568 | MS.gene057901:CDS | 55.0% |
| !! | ACTATTGGAGCGCTGCATCG+TGG | - | chr3.3:15562466-15562485 | None:intergenic | 55.0% |
| !! | CATTGGAGGCGTCGATCTCT+AGG | + | chr3.3:15561600-15561619 | MS.gene057901:CDS | 55.0% |
| CTGGTGGCTTGACCCTCTTG+GGG | + | chr3.3:15562881-15562900 | MS.gene057901:CDS | 60.0% | |
| TGACCCTCTTGGGGCCATCT+TGG | + | chr3.3:15562890-15562909 | MS.gene057901:CDS | 60.0% | |
| !! | GGAGCGCTGCATCGTGGAAG+TGG | - | chr3.3:15562460-15562479 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 15561016 | 15563565 | 15561016 | ID=MS.gene057901 |
| chr3.3 | mRNA | 15561016 | 15563565 | 15561016 | ID=MS.gene057901.t1;Parent=MS.gene057901 |
| chr3.3 | exon | 15561016 | 15561029 | 15561016 | ID=MS.gene057901.t1.exon1;Parent=MS.gene057901.t1 |
| chr3.3 | CDS | 15561016 | 15561029 | 15561016 | ID=cds.MS.gene057901.t1;Parent=MS.gene057901.t1 |
| chr3.3 | exon | 15561271 | 15561681 | 15561271 | ID=MS.gene057901.t1.exon2;Parent=MS.gene057901.t1 |
| chr3.3 | CDS | 15561271 | 15561681 | 15561271 | ID=cds.MS.gene057901.t1;Parent=MS.gene057901.t1 |
| chr3.3 | exon | 15562779 | 15562911 | 15562779 | ID=MS.gene057901.t1.exon3;Parent=MS.gene057901.t1 |
| chr3.3 | CDS | 15562779 | 15562911 | 15562779 | ID=cds.MS.gene057901.t1;Parent=MS.gene057901.t1 |
| chr3.3 | exon | 15563388 | 15563441 | 15563388 | ID=MS.gene057901.t1.exon4;Parent=MS.gene057901.t1 |
| chr3.3 | CDS | 15563388 | 15563441 | 15563388 | ID=cds.MS.gene057901.t1;Parent=MS.gene057901.t1 |
| chr3.3 | exon | 15563533 | 15563565 | 15563533 | ID=MS.gene057901.t1.exon5;Parent=MS.gene057901.t1 |
| chr3.3 | CDS | 15563533 | 15563565 | 15563533 | ID=cds.MS.gene057901.t1;Parent=MS.gene057901.t1 |
| Gene Sequence |
| Protein sequence |
