Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057925.t1 | XP_013459052.1 | 96.3 | 296 | 11 | 0 | 1 | 296 | 1 | 296 | 1.00E-153 | 552.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057925.t1 | Q9S7P9 | 55.4 | 303 | 125 | 3 | 1 | 296 | 1 | 300 | 6.9e-79 | 295.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057925.t1 | A0A072V4J0 | 96.3 | 296 | 11 | 0 | 1 | 296 | 1 | 296 | 7.2e-154 | 552.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050363 | MS.gene057925 | 0.832718 | 8.06E-56 | -1.69E-46 |
| MS.gene057925 | MS.gene37609 | 0.812804 | 3.53E-51 | -1.69E-46 |
| MS.gene057925 | MS.gene42252 | 0.802518 | 5.40E-49 | -1.69E-46 |
| MS.gene057925 | MS.gene47031 | 0.801971 | 7.00E-49 | -1.69E-46 |
| MS.gene057925 | MS.gene51809 | 0.821249 | 4.46E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057925.t1 | MTR_3g023720 | 96.284 | 296 | 11 | 0 | 1 | 296 | 1 | 296 | 0.0 | 591 |
| MS.gene057925.t1 | MTR_3g023720 | 97.845 | 232 | 5 | 0 | 1 | 232 | 1 | 232 | 2.62e-171 | 474 |
| MS.gene057925.t1 | MTR_4g109310 | 62.914 | 302 | 104 | 3 | 1 | 296 | 1 | 300 | 8.53e-120 | 345 |
| MS.gene057925.t1 | MTR_8g021950 | 64.789 | 213 | 75 | 0 | 82 | 294 | 13 | 225 | 2.17e-94 | 278 |
| MS.gene057925.t1 | MTR_5g043850 | 56.190 | 210 | 92 | 0 | 87 | 296 | 62 | 271 | 7.83e-79 | 240 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057925.t1 | AT5G61210 | 55.519 | 308 | 117 | 6 | 1 | 296 | 1 | 300 | 6.63e-105 | 308 |
| MS.gene057925.t1 | AT5G61210 | 55.519 | 308 | 117 | 6 | 1 | 296 | 1 | 300 | 6.63e-105 | 308 |
| MS.gene057925.t1 | AT1G13890 | 61.233 | 227 | 86 | 1 | 70 | 296 | 39 | 263 | 3.45e-96 | 284 |
| MS.gene057925.t1 | AT1G13890 | 61.233 | 227 | 86 | 1 | 70 | 296 | 39 | 263 | 3.45e-96 | 284 |
| MS.gene057925.t1 | AT5G07880 | 46.094 | 256 | 129 | 4 | 45 | 296 | 1 | 251 | 1.85e-73 | 226 |
| MS.gene057925.t1 | AT5G07880 | 46.094 | 256 | 129 | 4 | 45 | 296 | 1 | 251 | 1.85e-73 | 226 |
Find 74 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTTGGTTTCCATGTTT+TGG | 0.127306 | 3.3:+15012765 | None:intergenic |
| CTTGGCTTTGACTGTCCTTT+AGG | 0.144912 | 3.3:+15012552 | None:intergenic |
| TTGGCTTTGACTGTCCTTTA+GGG | 0.248198 | 3.3:+15012553 | None:intergenic |
| TCTTCATTTACTTAGAAAAT+AGG | 0.251352 | 3.3:-15011026 | None:intergenic |
| TGATTCTGATGAAGAGAAAA+AGG | 0.275386 | 3.3:-15013583 | MS.gene057925:CDS |
| CTTCATTTACTTAGAAAATA+GGG | 0.287549 | 3.3:-15011025 | None:intergenic |
| GGAGGAGTATGCTGTTTATA+AGG | 0.310579 | 3.3:-15013355 | MS.gene057925:CDS |
| ATTGACATGGGAGTAGAAAT+TGG | 0.324319 | 3.3:-15011814 | MS.gene057925:CDS |
| TCAATACCCTGCTTAAATTA+TGG | 0.328730 | 3.3:+15013193 | None:intergenic |
| GAGTCAATCTGTGGAGGATT+TGG | 0.329006 | 3.3:-15013376 | MS.gene057925:CDS |
| ACTCTTTCAAATGCATTTGT+TGG | 0.338928 | 3.3:+15012513 | None:intergenic |
| GTCAGATATAAGTGATCTCT+TGG | 0.355240 | 3.3:-15011857 | MS.gene057925:CDS |
| TTTGGTCATGCTGCATCATC+AGG | 0.361549 | 3.3:-15013259 | MS.gene057925:CDS |
| TTCAAATCCATCTATGGCTC+TGG | 0.372333 | 3.3:+15011099 | None:intergenic |
| GGCTCAGAAAGTGCTTTCCT+TGG | 0.400984 | 3.3:+15012534 | None:intergenic |
| AGAGAGAGATAGAAAATGTT+AGG | 0.401906 | 3.3:-15013660 | None:intergenic |
| TTGGAGCAACGAGAGAAGTT+AGG | 0.406014 | 3.3:-15012588 | MS.gene057925:CDS |
| ACAGGCCCTACAATATTTGC+AGG | 0.407886 | 3.3:-15012730 | MS.gene057925:intron |
| AAGAAGACAGGCAAAATAAC+AGG | 0.410581 | 3.3:-15012748 | MS.gene057925:CDS |
| ATCCATCTATGGCTCTGGTT+TGG | 0.417000 | 3.3:+15011104 | None:intergenic |
| TGCTAACCTGCAAATATTGT+AGG | 0.433138 | 3.3:+15012724 | None:intergenic |
| TTCTCTTCATCAGAATCAAA+GGG | 0.446731 | 3.3:+15013588 | None:intergenic |
| CGAGCATCAACATCATCAAA+AGG | 0.454347 | 3.3:+15013486 | None:intergenic |
| CTCTCGTTGCTCCAAGTGGT+TGG | 0.462236 | 3.3:+15012596 | None:intergenic |
| TTTCTCTTCATCAGAATCAA+AGG | 0.462308 | 3.3:+15013587 | None:intergenic |
| TATTAGTTTCTCTCTGAACT+AGG | 0.463530 | 3.3:+15013514 | None:intergenic |
| CAAAATCAGTAAACAATTGT+CGG | 0.468936 | 3.3:-15013320 | MS.gene057925:CDS |
| GGATTGAATTCTGCCCCTAA+AGG | 0.490760 | 3.3:-15012567 | MS.gene057925:CDS |
| TAAATGAAGAGTACGTTGAT+TGG | 0.491751 | 3.3:+15011039 | None:intergenic |
| AGCCAAACCAGAGCCATAGA+TGG | 0.493428 | 3.3:-15011106 | MS.gene057925:CDS |
| TTGACATGGGAGTAGAAATT+GGG | 0.493604 | 3.3:-15011813 | MS.gene057925:CDS |
| TCATCTTATGCCCCATCGTA+CGG | 0.495957 | 3.3:-15013447 | MS.gene057925:CDS |
| GCATTGACCATAATTTAAGC+AGG | 0.500853 | 3.3:-15013200 | MS.gene057925:CDS |
| TGATCTCTTGGGAGAACTGA+AGG | 0.508784 | 3.3:-15011845 | MS.gene057925:CDS |
| AATTTCTACTCCCATGTCAA+TGG | 0.517023 | 3.3:+15011816 | None:intergenic |
| AGAGGATGCTACCAAGACTT+TGG | 0.532804 | 3.3:-15013277 | MS.gene057925:CDS |
| GAAGGGCATGGCCATTGACA+TGG | 0.535314 | 3.3:-15011827 | MS.gene057925:CDS |
| TCAATCTGTGGAGGATTTGG+AGG | 0.539441 | 3.3:-15013373 | MS.gene057925:CDS |
| AAGAACGACTTCCGTGACTC+TGG | 0.543178 | 3.3:-15013408 | MS.gene057925:CDS |
| ATGCAGCATGACCAAAGTCT+TGG | 0.547106 | 3.3:+15013266 | None:intergenic |
| GTTGATTGGCACCGTTCATG+CGG | 0.547185 | 3.3:+15011053 | None:intergenic |
| TGTTTCGATTTCCGTACGAT+GGG | 0.547309 | 3.3:+15013436 | None:intergenic |
| ATCAACATCATCAAAAGGGT+TGG | 0.547359 | 3.3:+15013491 | None:intergenic |
| AAGGGATTATGCTTAGACCT+GGG | 0.549583 | 3.3:+15013606 | None:intergenic |
| TCAGATATAAGTGATCTCTT+GGG | 0.552352 | 3.3:-15011856 | MS.gene057925:CDS |
| AAAGGGATTATGCTTAGACC+TGG | 0.553655 | 3.3:+15013605 | None:intergenic |
| ATCAGGGCGAGCAGATTACA+AGG | 0.553800 | 3.3:-15013242 | MS.gene057925:CDS |
| TTGATTGGCACCGTTCATGC+GGG | 0.560714 | 3.3:+15011054 | None:intergenic |
| GCTAACCTGCAAATATTGTA+GGG | 0.565828 | 3.3:+15012725 | None:intergenic |
| AGGAGTCACGATATTGCTGC+TGG | 0.568758 | 3.3:-15013222 | MS.gene057925:CDS |
| AAACTATTGGGAAATCTTGG+TGG | 0.568922 | 3.3:-15012796 | MS.gene057925:CDS |
| AAGTTAAACACCCGCATGAA+CGG | 0.574223 | 3.3:-15011064 | MS.gene057925:CDS |
| ACATGGAAACCAAAGAAGAC+AGG | 0.577046 | 3.3:-15012760 | MS.gene057925:CDS |
| ACTTCTCTCGTTGCTCCAAG+TGG | 0.582499 | 3.3:+15012592 | None:intergenic |
| TGGCTTTGACTGTCCTTTAG+GGG | 0.590549 | 3.3:+15012554 | None:intergenic |
| ATGTTTCGATTTCCGTACGA+TGG | 0.590607 | 3.3:+15013435 | None:intergenic |
| GAGCATCAACATCATCAAAA+GGG | 0.590617 | 3.3:+15013487 | None:intergenic |
| TTTGATGATGTTGATGCTCG+TGG | 0.590946 | 3.3:-15013483 | MS.gene057925:CDS |
| CTTGGGAGAACTGAAGGGCA+TGG | 0.596068 | 3.3:-15011839 | MS.gene057925:CDS |
| GTGGCATATTCTCCAAAACA+TGG | 0.599060 | 3.3:-15012777 | MS.gene057925:CDS |
| GATCTCTTGGGAGAACTGAA+GGG | 0.608369 | 3.3:-15011844 | MS.gene057925:CDS |
| AACGACTTCCGTGACTCTGG+TGG | 0.615758 | 3.3:-15013405 | MS.gene057925:CDS |
| AAATGCATTTGAAAGAGTCG+AGG | 0.624457 | 3.3:-15012508 | MS.gene057925:intron |
| CATTGACCATAATTTAAGCA+GGG | 0.624462 | 3.3:-15013199 | MS.gene057925:intron |
| AAGGGCATGGCCATTGACAT+GGG | 0.629943 | 3.3:-15011826 | MS.gene057925:CDS |
| TCTGCAATCCACCAGAGTCA+CGG | 0.629953 | 3.3:+15013397 | None:intergenic |
| TTGGTCATGCTGCATCATCA+GGG | 0.636187 | 3.3:-15013258 | MS.gene057925:CDS |
| CTAAAGGACAGTCAAAGCCA+AGG | 0.641205 | 3.3:-15012551 | MS.gene057925:CDS |
| GATAGCAGAGGAAATGCGAG+AGG | 0.657516 | 3.3:-15013295 | MS.gene057925:CDS |
| GTTTCGATTTCCGTACGATG+GGG | 0.674015 | 3.3:+15013437 | None:intergenic |
| ATTGCAGAGTCAATCTGTGG+AGG | 0.684326 | 3.3:-15013382 | MS.gene057925:CDS |
| CTTTAAAAGATGCTAAACCC+AGG | 0.688691 | 3.3:-15013623 | MS.gene057925:CDS |
| TGGATTGCAGAGTCAATCTG+TGG | 0.696583 | 3.3:-15013385 | MS.gene057925:CDS |
| CAATTGTCGGAAGATAGCAG+AGG | 0.756558 | 3.3:-15013307 | MS.gene057925:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTGGTTTTTAATTAAT+TGG | + | chr3.3:15013247-15013266 | None:intergenic | 10.0% |
| !!! | TTTAATTAATTGGTTTAAAA+CGG | + | chr3.3:15013237-15013256 | None:intergenic | 10.0% |
| !!! | TTTTTATATTGATGTTTATA+GGG | - | chr3.3:15011849-15011868 | MS.gene057925:CDS | 10.0% |
| !!! | TTTTTTATATTGATGTTTAT+AGG | - | chr3.3:15011848-15011867 | MS.gene057925:CDS | 10.0% |
| !! | CTTAAATGAAATGTTAATAA+GGG | - | chr3.3:15012531-15012550 | MS.gene057925:CDS | 15.0% |
| !! | TCTTAAATGAAATGTTAATA+AGG | - | chr3.3:15012530-15012549 | MS.gene057925:CDS | 15.0% |
| !!! | GTTATAATTTAAAGTGATTT+TGG | - | chr3.3:15013534-15013553 | MS.gene057925:CDS | 15.0% |
| !!! | TAATCCACATTTTTTAAATT+TGG | - | chr3.3:15013061-15013080 | MS.gene057925:intron | 15.0% |
| !!! | TATTTCAAATTTTAGTTGTT+TGG | - | chr3.3:15012416-15012435 | MS.gene057925:intron | 15.0% |
| !!! | TATTTTGCATCAATTAAATA+TGG | + | chr3.3:15011515-15011534 | None:intergenic | 15.0% |
| !!! | TTAAAAAATGTGGATTAAAT+GGG | + | chr3.3:15013058-15013077 | None:intergenic | 15.0% |
| !!! | TTCATTTAAGATTTAATGTA+AGG | + | chr3.3:15012521-15012540 | None:intergenic | 15.0% |
| !!! | TTTAAAAAATGTGGATTAAA+TGG | + | chr3.3:15013059-15013078 | None:intergenic | 15.0% |
| !! | AAAATCACAAATGAAAACTA+AGG | + | chr3.3:15012730-15012749 | None:intergenic | 20.0% |
| !! | ACTGTTAAAGAATATTTAGA+AGG | + | chr3.3:15012928-15012947 | None:intergenic | 20.0% |
| !! | ATGTTCAAAGGATATAAAAA+AGG | + | chr3.3:15013094-15013113 | None:intergenic | 20.0% |
| !! | GTGATTAATTTCTTAATAGT+TGG | - | chr3.3:15012279-15012298 | MS.gene057925:intron | 20.0% |
| !! | TCAATTGGTTAAACTATTTA+AGG | + | chr3.3:15013463-15013482 | None:intergenic | 20.0% |
| !! | TTAATTGATGCAAAATACTA+TGG | - | chr3.3:15011518-15011537 | MS.gene057925:intron | 20.0% |
| !!! | AATCCAAATCCAATTATTTT+AGG | - | chr3.3:15011727-15011746 | MS.gene057925:intron | 20.0% |
| !!! | CGAAGATTTTTTAAATAACA+TGG | + | chr3.3:15013291-15013310 | None:intergenic | 20.0% |
| !!! | GTTAAACTATTTAAGGTTAA+AGG | + | chr3.3:15013456-15013475 | None:intergenic | 20.0% |
| !!! | TATTTAAGGTTAAAGGTTTT+TGG | + | chr3.3:15013449-15013468 | None:intergenic | 20.0% |
| !!! | TGTTATTTAAAAAATCTTCG+TGG | - | chr3.3:15013291-15013310 | MS.gene057925:CDS | 20.0% |
| !!! | TTCAATTTCTTTTAGAGTAT+AGG | - | chr3.3:15012439-15012458 | MS.gene057925:intron | 20.0% |
| !!! | TTTTGAAGTTCAGTTATTTT+GGG | - | chr3.3:15011992-15012011 | MS.gene057925:intron | 20.0% |
| !!! | TTTTTATCTTAGTGAAAACA+AGG | - | chr3.3:15011779-15011798 | MS.gene057925:intron | 20.0% |
| ! | AAAGGATATAAAAAAGGACA+AGG | + | chr3.3:15013088-15013107 | None:intergenic | 25.0% |
| ! | AGACCTAAAATAATTGGATT+TGG | + | chr3.3:15011733-15011752 | None:intergenic | 25.0% |
| ! | AGGACCAAATTTAAAAAATG+TGG | + | chr3.3:15013068-15013087 | None:intergenic | 25.0% |
| ! | ATTTGTTTATAAACTCGTAG+AGG | - | chr3.3:15012480-15012499 | MS.gene057925:intron | 25.0% |
| ! | CAAAATCAGTAAACAATTGT+CGG | - | chr3.3:15011352-15011371 | MS.gene057925:intron | 25.0% |
| ! | CAAACAATGAAATGGTAATT+AGG | + | chr3.3:15012325-15012344 | None:intergenic | 25.0% |
| ! | CTAATTACCATTTCATTGTT+TGG | - | chr3.3:15012323-15012342 | MS.gene057925:intron | 25.0% |
| ! | TATCAATAATTCTGTCTGTA+AGG | + | chr3.3:15012635-15012654 | None:intergenic | 25.0% |
| ! | TATCTTATCAGCAGAAAAAA+TGG | - | chr3.3:15013329-15013348 | MS.gene057925:CDS | 25.0% |
| ! | TTATAGGGAGAAAAACTATT+GGG | - | chr3.3:15011864-15011883 | MS.gene057925:CDS | 25.0% |
| ! | TTTATAGGGAGAAAAACTAT+TGG | - | chr3.3:15011863-15011882 | MS.gene057925:CDS | 25.0% |
| !! | TAAAACAAAGCACTTTCTAA+GGG | + | chr3.3:15011826-15011845 | None:intergenic | 25.0% |
| !! | TAATGACTTGAAAGTATAAG+TGG | + | chr3.3:15012690-15012709 | None:intergenic | 25.0% |
| !! | TTAAAACAAAGCACTTTCTA+AGG | + | chr3.3:15011827-15011846 | None:intergenic | 25.0% |
| !!! | ATCTTTTTCAAATCCATCTA+TGG | + | chr3.3:15013582-15013601 | None:intergenic | 25.0% |
| !!! | ATTTCTTTTAGAGTATAGGA+TGG | - | chr3.3:15012443-15012462 | MS.gene057925:intron | 25.0% |
| !!! | CTTTTGAAGTTCAGTTATTT+TGG | - | chr3.3:15011991-15012010 | MS.gene057925:intron | 25.0% |
| !!! | TTTCTTTTAGAGTATAGGAT+GGG | - | chr3.3:15012444-15012463 | MS.gene057925:intron | 25.0% |
| AAACAAGCCCTAAGTAAAAT+CGG | + | chr3.3:15012355-15012374 | None:intergenic | 30.0% | |
| ACAACTAGTGTTGTATCAAT+TGG | + | chr3.3:15013478-15013497 | None:intergenic | 30.0% | |
| ACTCTTTCAAATGCATTTGT+TGG | + | chr3.3:15012162-15012181 | None:intergenic | 30.0% | |
| ATAAGTGGAGGAGTAAATTT+AGG | - | chr3.3:15013376-15013395 | MS.gene057925:CDS | 30.0% | |
| CATGCTCAAATAAAGTGAAA+TGG | + | chr3.3:15013515-15013534 | None:intergenic | 30.0% | |
| CATTGACCATAATTTAAGCA+GGG | - | chr3.3:15011473-15011492 | MS.gene057925:intron | 30.0% | |
| GAAAAACTATTGGGAAATCT+TGG | - | chr3.3:15011873-15011892 | MS.gene057925:CDS | 30.0% | |
| TATCAGCAGAAAAAATGGTA+GGG | - | chr3.3:15013334-15013353 | MS.gene057925:CDS | 30.0% | |
| TCAATACCCTGCTTAAATTA+TGG | + | chr3.3:15011482-15011501 | None:intergenic | 30.0% | |
| TCAGATATAAGTGATCTCTT+GGG | - | chr3.3:15012816-15012835 | MS.gene057925:intron | 30.0% | |
| TCTAGGAGACCTAAAATAAT+TGG | + | chr3.3:15011739-15011758 | None:intergenic | 30.0% | |
| TGATTCTGATGAAGAGAAAA+AGG | - | chr3.3:15011089-15011108 | MS.gene057925:CDS | 30.0% | |
| TGCAAGAGTGATAAATAGTT+CGG | - | chr3.3:15012969-15012988 | MS.gene057925:intron | 30.0% | |
| TTAAATGGGAGACAAAACTT+AGG | + | chr3.3:15013044-15013063 | None:intergenic | 30.0% | |
| TTAATGAAAACAGAGATGCA+TGG | - | chr3.3:15012377-15012396 | MS.gene057925:intron | 30.0% | |
| TTATCAGCAGAAAAAATGGT+AGG | - | chr3.3:15013333-15013352 | MS.gene057925:CDS | 30.0% | |
| TTCTCTTCATCAGAATCAAA+GGG | + | chr3.3:15011087-15011106 | None:intergenic | 30.0% | |
| TTTCTCTTCATCAGAATCAA+AGG | + | chr3.3:15011088-15011107 | None:intergenic | 30.0% | |
| ! | AAAACAAAGCACTTTCTAAG+GGG | + | chr3.3:15011825-15011844 | None:intergenic | 30.0% |
| ! | CTTTCAAGTCATTATAAGTC+CGG | - | chr3.3:15012696-15012715 | MS.gene057925:intron | 30.0% |
| ! | TAAATGAAGAGTACGTTGAT+TGG | + | chr3.3:15013636-15013655 | None:intergenic | 30.0% |
| ! | TATTAGTTTCTCTCTGAACT+AGG | + | chr3.3:15011161-15011180 | None:intergenic | 30.0% |
| !! | TTGGTTTTCGATATGTTCAA+AGG | + | chr3.3:15013106-15013125 | None:intergenic | 30.0% |
| !!! | ATTATTTTAGGTCTCCTAGA+TGG | - | chr3.3:15011739-15011758 | MS.gene057925:intron | 30.0% |
| !!! | TTATTTTAGGTCTCCTAGAT+GGG | - | chr3.3:15011740-15011759 | MS.gene057925:intron | 30.0% |
| AAACTATTGGGAAATCTTGG+TGG | - | chr3.3:15011876-15011895 | MS.gene057925:CDS | 35.0% | |
| AAATGCATTTGAAAGAGTCG+AGG | - | chr3.3:15012164-15012183 | MS.gene057925:intron | 35.0% | |
| AAGAAGACAGGCAAAATAAC+AGG | - | chr3.3:15011924-15011943 | MS.gene057925:intron | 35.0% | |
| AATTTCTACTCCCATGTCAA+TGG | + | chr3.3:15012859-15012878 | None:intergenic | 35.0% | |
| ACTAAGATAAAAACAGCACG+AGG | + | chr3.3:15011772-15011791 | None:intergenic | 35.0% | |
| ATATCCTATATGCTTGAGGA+AGG | + | chr3.3:15012580-15012599 | None:intergenic | 35.0% | |
| ATCAACATCATCAAAAGGGT+TGG | + | chr3.3:15011184-15011203 | None:intergenic | 35.0% | |
| ATCTGAAAACGCGAAATAAG+TGG | - | chr3.3:15013361-15013380 | MS.gene057925:CDS | 35.0% | |
| ATTGACATGGGAGTAGAAAT+TGG | - | chr3.3:15012858-15012877 | MS.gene057925:intron | 35.0% | |
| CATTGCTGAGATCAATACTA+AGG | + | chr3.3:15012755-15012774 | None:intergenic | 35.0% | |
| CCAAATCAACATTGTCTACA+TGG | - | chr3.3:15013122-15013141 | MS.gene057925:intron | 35.0% | |
| GAGCATCAACATCATCAAAA+GGG | + | chr3.3:15011188-15011207 | None:intergenic | 35.0% | |
| GCTAACCTGCAAATATTGTA+GGG | + | chr3.3:15011950-15011969 | None:intergenic | 35.0% | |
| GTCAGATATAAGTGATCTCT+TGG | - | chr3.3:15012815-15012834 | MS.gene057925:intron | 35.0% | |
| GTCATTGGATGAAAATCAGA+TGG | - | chr3.3:15011594-15011613 | MS.gene057925:intron | 35.0% | |
| TGAGATATCCTATATGCTTG+AGG | + | chr3.3:15012584-15012603 | None:intergenic | 35.0% | |
| TGCTAACCTGCAAATATTGT+AGG | + | chr3.3:15011951-15011970 | None:intergenic | 35.0% | |
| TTGACATGGGAGTAGAAATT+GGG | - | chr3.3:15012859-15012878 | MS.gene057925:intron | 35.0% | |
| ! | AAATGAAAACTAAGGCATCC+AGG | + | chr3.3:15012722-15012741 | None:intergenic | 35.0% |
| ! | CCATGTAGACAATGTTGATT+TGG | + | chr3.3:15013125-15013144 | None:intergenic | 35.0% |
| ! | CTGGGTTTAGCATCTTTTAA+AGG | + | chr3.3:15011051-15011070 | None:intergenic | 35.0% |
| ! | CTTTAAAAGATGCTAAACCC+AGG | - | chr3.3:15011049-15011068 | MS.gene057925:CDS | 35.0% |
| ! | GCATTGACCATAATTTAAGC+AGG | - | chr3.3:15011472-15011491 | MS.gene057925:intron | 35.0% |
| !! | ATATTGACTTAGCTGTCATG+TGG | + | chr3.3:15013171-15013190 | None:intergenic | 35.0% |
| !! | CTTCTTTGGTTTCCATGTTT+TGG | + | chr3.3:15011910-15011929 | None:intergenic | 35.0% |
| !! | GATTTTACTTAGGGCTTGTT+TGG | - | chr3.3:15012354-15012373 | MS.gene057925:intron | 35.0% |
| !! | GTTATTTTGCCTGTCTTCTT+TGG | + | chr3.3:15011924-15011943 | None:intergenic | 35.0% |
| AAAGGGATTATGCTTAGACC+TGG | + | chr3.3:15011070-15011089 | None:intergenic | 40.0% | |
| AAGATAAAAACAGCACGAGG+AGG | + | chr3.3:15011769-15011788 | None:intergenic | 40.0% | |
| AAGCCCTAAGTAAAATCGGT+TGG | + | chr3.3:15012351-15012370 | None:intergenic | 40.0% | |
| AAGGGATTATGCTTAGACCT+GGG | + | chr3.3:15011069-15011088 | None:intergenic | 40.0% | |
| AAGTTAAACACCCGCATGAA+CGG | - | chr3.3:15013608-15013627 | MS.gene057925:CDS | 40.0% | |
| ACATGGAAACCAAAGAAGAC+AGG | - | chr3.3:15011912-15011931 | MS.gene057925:intron | 40.0% | |
| AGATAAAAACAGCACGAGGA+GGG | + | chr3.3:15011768-15011787 | None:intergenic | 40.0% | |
| AGTCGAGGTTCGTAATAACT+TGG | - | chr3.3:15012179-15012198 | MS.gene057925:intron | 40.0% | |
| ATCAGTTGACTGCAAGCATT+TGG | + | chr3.3:15011564-15011583 | None:intergenic | 40.0% | |
| ATGTTTCGATTTCCGTACGA+TGG | + | chr3.3:15011240-15011259 | None:intergenic | 40.0% | |
| CGAGCATCAACATCATCAAA+AGG | + | chr3.3:15011189-15011208 | None:intergenic | 40.0% | |
| CTGTCTGTAAGGTTCAAACA+AGG | + | chr3.3:15012624-15012643 | None:intergenic | 40.0% | |
| CTTTCCTTCCTCAAGCATAT+AGG | - | chr3.3:15012573-15012592 | MS.gene057925:CDS | 40.0% | |
| GATGCAAAATACTATGGACC+AGG | - | chr3.3:15011524-15011543 | MS.gene057925:intron | 40.0% | |
| GCCATTGGATGAAGAATAGA+AGG | + | chr3.3:15011672-15011691 | None:intergenic | 40.0% | |
| GCCTTCTATTCTTCATCCAA+TGG | - | chr3.3:15011668-15011687 | MS.gene057925:intron | 40.0% | |
| GTGGCATATTCTCCAAAACA+TGG | - | chr3.3:15011895-15011914 | MS.gene057925:intron | 40.0% | |
| GTTCAAACAAGGATACGACA+GGG | + | chr3.3:15012613-15012632 | None:intergenic | 40.0% | |
| GTTTCAATAGTCGTGGATCT+CGG | + | chr3.3:15011694-15011713 | None:intergenic | 40.0% | |
| TGAAAACGCGAAATAAGTGG+AGG | - | chr3.3:15013364-15013383 | MS.gene057925:CDS | 40.0% | |
| TGTTTCGATTTCCGTACGAT+GGG | + | chr3.3:15011239-15011258 | None:intergenic | 40.0% | |
| TTCAAATCCATCTATGGCTC+TGG | + | chr3.3:15013576-15013595 | None:intergenic | 40.0% | |
| ! | AAAATGATTTGTACGCCACG+TGG | - | chr3.3:15013262-15013281 | MS.gene057925:CDS | 40.0% |
| ! | CGTGGCGTACAAATCATTTT+TGG | + | chr3.3:15013262-15013281 | None:intergenic | 40.0% |
| ! | GGAGGAGTATGCTGTTTATA+AGG | - | chr3.3:15011317-15011336 | MS.gene057925:intron | 40.0% |
| ! | GTTGGCTCCAAACAATGAAA+TGG | + | chr3.3:15012333-15012352 | None:intergenic | 40.0% |
| !! | GAGCCAACCGATTTTACTTA+GGG | - | chr3.3:15012345-15012364 | MS.gene057925:intron | 40.0% |
| !! | TCTCAGCAATGTTCTGAAAC+AGG | - | chr3.3:15012764-15012783 | MS.gene057925:CDS | 40.0% |
| !! | TTGGCTTTGACTGTCCTTTA+GGG | + | chr3.3:15012122-15012141 | None:intergenic | 40.0% |
| !! | TTTGATGATGTTGATGCTCG+TGG | - | chr3.3:15011189-15011208 | MS.gene057925:intron | 40.0% |
| AAGTCATTATAAGTCCGGCC+TGG | - | chr3.3:15012701-15012720 | MS.gene057925:intron | 45.0% | |
| ACAGAGATGCATGGTGAGAA+TGG | - | chr3.3:15012386-15012405 | MS.gene057925:intron | 45.0% | |
| ACAGGCCCTACAATATTTGC+AGG | - | chr3.3:15011942-15011961 | MS.gene057925:intron | 45.0% | |
| AGAGGATGCTACCAAGACTT+TGG | - | chr3.3:15011395-15011414 | MS.gene057925:intron | 45.0% | |
| AGTCGCAGTTTCAATAGTCG+TGG | + | chr3.3:15011701-15011720 | None:intergenic | 45.0% | |
| ATGCAGCATGACCAAAGTCT+TGG | + | chr3.3:15011409-15011428 | None:intergenic | 45.0% | |
| ATTGCAGAGTCAATCTGTGG+AGG | - | chr3.3:15011290-15011309 | MS.gene057925:intron | 45.0% | |
| CAATTGTCGGAAGATAGCAG+AGG | - | chr3.3:15011365-15011384 | MS.gene057925:intron | 45.0% | |
| CTAAAGGACAGTCAAAGCCA+AGG | - | chr3.3:15012121-15012140 | MS.gene057925:intron | 45.0% | |
| GAGTCAATCTGTGGAGGATT+TGG | - | chr3.3:15011296-15011315 | MS.gene057925:intron | 45.0% | |
| GATCTCTTGGGAGAACTGAA+GGG | - | chr3.3:15012828-15012847 | MS.gene057925:intron | 45.0% | |
| GGATTGAATTCTGCCCCTAA+AGG | - | chr3.3:15012105-15012124 | MS.gene057925:intron | 45.0% | |
| GGTTCAAACAAGGATACGAC+AGG | + | chr3.3:15012614-15012633 | None:intergenic | 45.0% | |
| GTTTCGATTTCCGTACGATG+GGG | + | chr3.3:15011238-15011257 | None:intergenic | 45.0% | |
| TAAATAACATGGCGTCCACG+TGG | + | chr3.3:15013280-15013299 | None:intergenic | 45.0% | |
| TCAATCTGTGGAGGATTTGG+AGG | - | chr3.3:15011299-15011318 | MS.gene057925:intron | 45.0% | |
| TCATCTTATGCCCCATCGTA+CGG | - | chr3.3:15011225-15011244 | MS.gene057925:intron | 45.0% | |
| TGACTTAGCTGTCATGTGGA+CGG | + | chr3.3:15013167-15013186 | None:intergenic | 45.0% | |
| TGATCTCTTGGGAGAACTGA+AGG | - | chr3.3:15012827-15012846 | MS.gene057925:intron | 45.0% | |
| TGCTTGCAGTCAACTGATCT+CGG | - | chr3.3:15011566-15011585 | MS.gene057925:intron | 45.0% | |
| TGGATTGCAGAGTCAATCTG+TGG | - | chr3.3:15011287-15011306 | MS.gene057925:intron | 45.0% | |
| TTGGAGCAACGAGAGAAGTT+AGG | - | chr3.3:15012084-15012103 | MS.gene057925:intron | 45.0% | |
| TTGGTCATGCTGCATCATCA+GGG | - | chr3.3:15011414-15011433 | MS.gene057925:intron | 45.0% | |
| TTTGGTCATGCTGCATCATC+AGG | - | chr3.3:15011413-15011432 | MS.gene057925:intron | 45.0% | |
| !! | ATCCATCTATGGCTCTGGTT+TGG | + | chr3.3:15013571-15013590 | None:intergenic | 45.0% |
| !! | CTTGGCTTTGACTGTCCTTT+AGG | + | chr3.3:15012123-15012142 | None:intergenic | 45.0% |
| !! | GGAGCCAACCGATTTTACTT+AGG | - | chr3.3:15012344-15012363 | MS.gene057925:intron | 45.0% |
| !! | TGGCTTTGACTGTCCTTTAG+GGG | + | chr3.3:15012121-15012140 | None:intergenic | 45.0% |
| AAGAACGACTTCCGTGACTC+TGG | - | chr3.3:15011264-15011283 | MS.gene057925:intron | 50.0% | |
| ACTTCTCTCGTTGCTCCAAG+TGG | + | chr3.3:15012083-15012102 | None:intergenic | 50.0% | |
| AGCCAAACCAGAGCCATAGA+TGG | - | chr3.3:15013566-15013585 | MS.gene057925:CDS | 50.0% | |
| AGGAGTCACGATATTGCTGC+TGG | - | chr3.3:15011450-15011469 | MS.gene057925:intron | 50.0% | |
| ATCAGGGCGAGCAGATTACA+AGG | - | chr3.3:15011430-15011449 | MS.gene057925:intron | 50.0% | |
| CAGTCAACTGATCTCGGACT+CGG | - | chr3.3:15011572-15011591 | MS.gene057925:intron | 50.0% | |
| GATAGCAGAGGAAATGCGAG+AGG | - | chr3.3:15011377-15011396 | MS.gene057925:intron | 50.0% | |
| GTTGATTGGCACCGTTCATG+CGG | + | chr3.3:15013622-15013641 | None:intergenic | 50.0% | |
| TCTGCAATCCACCAGAGTCA+CGG | + | chr3.3:15011278-15011297 | None:intergenic | 50.0% | |
| TGGACCAGGATTACCTGCAA+CGG | - | chr3.3:15011538-15011557 | MS.gene057925:intron | 50.0% | |
| TTGATTGGCACCGTTCATGC+GGG | + | chr3.3:15013621-15013640 | None:intergenic | 50.0% | |
| ! | AAGGGCATGGCCATTGACAT+GGG | - | chr3.3:15012846-15012865 | MS.gene057925:intron | 50.0% |
| ! | GAAAACTAAGGCATCCAGGC+CGG | + | chr3.3:15012718-15012737 | None:intergenic | 50.0% |
| !! | CAGAAAAAGCGCCAACCACT+TGG | - | chr3.3:15012065-15012084 | MS.gene057925:intron | 50.0% |
| !! | GGCTCAGAAAGTGCTTTCCT+TGG | + | chr3.3:15012141-15012160 | None:intergenic | 50.0% |
| !!! | GTGGTTGGCGCTTTTTCTGA+CGG | + | chr3.3:15012064-15012083 | None:intergenic | 50.0% |
| !!! | TGGTTGGCGCTTTTTCTGAC+GGG | + | chr3.3:15012063-15012082 | None:intergenic | 50.0% |
| AACGACTTCCGTGACTCTGG+TGG | - | chr3.3:15011267-15011286 | MS.gene057925:intron | 55.0% | |
| CTCTCGTTGCTCCAAGTGGT+TGG | + | chr3.3:15012079-15012098 | None:intergenic | 55.0% | |
| CTTGGGAGAACTGAAGGGCA+TGG | - | chr3.3:15012833-15012852 | MS.gene057925:intron | 55.0% | |
| TAGTCGTGGATCTCGGCCAT+TGG | + | chr3.3:15011687-15011706 | None:intergenic | 55.0% | |
| TGCAAGCATTTGGCCGTTGC+AGG | + | chr3.3:15011554-15011573 | None:intergenic | 55.0% | |
| TTGGCCGTTGCAGGTAATCC+TGG | + | chr3.3:15011545-15011564 | None:intergenic | 55.0% | |
| ! | CTGATCTCGGACTCGGTCAT+TGG | - | chr3.3:15011579-15011598 | MS.gene057925:intron | 55.0% |
| ! | GAAGGGCATGGCCATTGACA+TGG | - | chr3.3:15012845-15012864 | MS.gene057925:intron | 55.0% |
| CACGAGGAGGGTTCCCATCT+AGG | + | chr3.3:15011756-15011775 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 15011027 | 15013667 | 15011027 | ID=MS.gene057925 |
| chr3.3 | mRNA | 15011027 | 15013667 | 15011027 | ID=MS.gene057925.t1;Parent=MS.gene057925 |
| chr3.3 | exon | 15013200 | 15013667 | 15013200 | ID=MS.gene057925.t1.exon1;Parent=MS.gene057925.t1 |
| chr3.3 | CDS | 15013200 | 15013667 | 15013200 | ID=cds.MS.gene057925.t1;Parent=MS.gene057925.t1 |
| chr3.3 | exon | 15012731 | 15012824 | 15012731 | ID=MS.gene057925.t1.exon2;Parent=MS.gene057925.t1 |
| chr3.3 | CDS | 15012731 | 15012824 | 15012731 | ID=cds.MS.gene057925.t1;Parent=MS.gene057925.t1 |
| chr3.3 | exon | 15012509 | 15012639 | 15012509 | ID=MS.gene057925.t1.exon3;Parent=MS.gene057925.t1 |
| chr3.3 | CDS | 15012509 | 15012639 | 15012509 | ID=cds.MS.gene057925.t1;Parent=MS.gene057925.t1 |
| chr3.3 | exon | 15011811 | 15011908 | 15011811 | ID=MS.gene057925.t1.exon4;Parent=MS.gene057925.t1 |
| chr3.3 | CDS | 15011811 | 15011908 | 15011811 | ID=cds.MS.gene057925.t1;Parent=MS.gene057925.t1 |
| chr3.3 | exon | 15011027 | 15011126 | 15011027 | ID=MS.gene057925.t1.exon5;Parent=MS.gene057925.t1 |
| chr3.3 | CDS | 15011027 | 15011126 | 15011027 | ID=cds.MS.gene057925.t1;Parent=MS.gene057925.t1 |
| Gene Sequence |
| Protein sequence |
