Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058421.t1 | XP_024631067.1 | 99.6 | 264 | 1 | 0 | 1 | 264 | 1 | 264 | 5.90E-113 | 417.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058421.t1 | Q5XEM9 | 83.8 | 259 | 38 | 1 | 6 | 264 | 6 | 260 | 6.6e-97 | 355.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058421.t1 | A0A072VES1 | 99.2 | 264 | 1 | 1 | 1 | 264 | 1 | 263 | 8.0e-112 | 412.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene058421.t1 | TF | Alfin-like |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene058421 | MS.gene33049 | 0.996776 | 4.58E-232 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058421.t1 | MTR_1g015185 | 99.242 | 264 | 1 | 1 | 1 | 264 | 1 | 263 | 0.0 | 543 |
MS.gene058421.t1 | MTR_8g019520 | 76.923 | 260 | 48 | 3 | 8 | 264 | 7 | 257 | 1.18e-130 | 370 |
MS.gene058421.t1 | MTR_8g019520 | 78.378 | 259 | 45 | 3 | 8 | 264 | 7 | 256 | 2.40e-130 | 369 |
MS.gene058421.t1 | MTR_2g040990 | 74.809 | 262 | 49 | 3 | 5 | 264 | 7 | 253 | 5.05e-125 | 356 |
MS.gene058421.t1 | MTR_1g015185 | 98.788 | 165 | 1 | 1 | 1 | 165 | 1 | 164 | 5.01e-118 | 336 |
MS.gene058421.t1 | MTR_4g134510 | 70.588 | 255 | 64 | 3 | 10 | 263 | 10 | 254 | 3.74e-113 | 326 |
MS.gene058421.t1 | MTR_2g099500 | 72.441 | 254 | 60 | 3 | 11 | 263 | 6 | 250 | 7.29e-111 | 320 |
MS.gene058421.t1 | MTR_4g015830 | 62.500 | 256 | 75 | 5 | 9 | 264 | 6 | 240 | 8.71e-95 | 279 |
MS.gene058421.t1 | MTR_7g068590 | 62.500 | 256 | 77 | 6 | 9 | 264 | 6 | 242 | 2.12e-92 | 273 |
MS.gene058421.t1 | MTR_8g066480 | 51.034 | 145 | 43 | 4 | 121 | 264 | 29 | 146 | 1.14e-28 | 107 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058421.t1 | AT5G20510 | 71.591 | 264 | 71 | 2 | 1 | 264 | 1 | 260 | 5.83e-124 | 353 |
MS.gene058421.t1 | AT3G42790 | 72.348 | 264 | 57 | 3 | 1 | 263 | 1 | 249 | 1.04e-122 | 350 |
MS.gene058421.t1 | AT2G02470 | 70.196 | 255 | 69 | 3 | 10 | 264 | 9 | 256 | 8.88e-111 | 320 |
MS.gene058421.t1 | AT2G02470 | 67.578 | 256 | 65 | 3 | 10 | 264 | 9 | 247 | 2.23e-109 | 316 |
MS.gene058421.t1 | AT5G26210 | 78.077 | 260 | 49 | 1 | 4 | 263 | 3 | 254 | 2.05e-108 | 314 |
MS.gene058421.t1 | AT1G14510 | 67.063 | 252 | 71 | 2 | 10 | 261 | 9 | 248 | 6.13e-107 | 310 |
MS.gene058421.t1 | AT5G20510 | 71.364 | 220 | 59 | 2 | 45 | 264 | 4 | 219 | 4.11e-98 | 286 |
MS.gene058421.t1 | AT5G05610 | 61.961 | 255 | 76 | 5 | 9 | 263 | 7 | 240 | 1.33e-97 | 286 |
MS.gene058421.t1 | AT5G05610 | 61.961 | 255 | 76 | 5 | 9 | 263 | 7 | 240 | 1.33e-97 | 286 |
MS.gene058421.t1 | AT3G11200 | 61.977 | 263 | 82 | 3 | 1 | 263 | 1 | 245 | 1.27e-96 | 283 |
MS.gene058421.t1 | AT5G20510 | 77.914 | 163 | 36 | 0 | 6 | 168 | 6 | 168 | 1.42e-82 | 246 |
MS.gene058421.t1 | AT3G11200 | 62.100 | 219 | 65 | 3 | 45 | 263 | 32 | 232 | 3.19e-80 | 241 |
MS.gene058421.t1 | AT2G02470 | 79.333 | 150 | 30 | 1 | 10 | 159 | 9 | 157 | 3.00e-72 | 222 |
Find 65 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAGGAAAATCTTTGCCTTTA+TGG | 0.094878 | 1.4:+6812301 | MS.gene058421:CDS |
AGAAAAGGATTGGCTATCTT+TGG | 0.280443 | 1.4:+6812426 | MS.gene058421:CDS |
GCTATGCAGCTGACGAGTTC+TGG | 0.291054 | 1.4:+6814187 | MS.gene058421:CDS |
ACAATCTTTGAAGTTGTTAC+AGG | 0.306235 | 1.4:+6813447 | MS.gene058421:CDS |
CTTAGAGTTTGATTTGGATT+TGG | 0.307586 | 1.4:-6813523 | None:intergenic |
TTTGAAGTTGTTACAGGGTC+TGG | 0.380524 | 1.4:+6813453 | MS.gene058421:CDS |
TTGATATGCTCAGCCCTTGC+CGG | 0.382099 | 1.4:-6814264 | None:intergenic |
GCTTACCTTAGAGTTTGATT+TGG | 0.384520 | 1.4:-6813529 | None:intergenic |
GTAACAACTTCAAAGATTGT+TGG | 0.390377 | 1.4:-6813444 | None:intergenic |
CAAATCCAAATCAAACTCTA+AGG | 0.411797 | 1.4:+6813524 | MS.gene058421:CDS |
TTAATACCCAATGCTGGCTC+TGG | 0.427895 | 1.4:-6812382 | None:intergenic |
TTGGATTTGACAAGGCTGAT+AGG | 0.428891 | 1.4:+6812506 | MS.gene058421:CDS |
GCTCGCTCGGAAATCCATAA+AGG | 0.438097 | 1.4:-6812315 | None:intergenic |
GGTATTAACTTTGCTAGAGA+TGG | 0.438852 | 1.4:+6812397 | MS.gene058421:CDS |
TCAGGCGGCACTTCCTCAGC+TGG | 0.444344 | 1.4:-6812355 | None:intergenic |
AATGCTGGCTCTGGAAGCTC+AGG | 0.453734 | 1.4:-6812373 | None:intergenic |
ATCTGCATTGCCATTGCCAT+TGG | 0.459684 | 1.4:-6814066 | None:intergenic |
GCTCTCTTGTTGCTGCAAGC+TGG | 0.467608 | 1.4:-6814300 | None:intergenic |
TTCACCTCCCACTGCTCGCT+CGG | 0.467752 | 1.4:-6812328 | None:intergenic |
TCGACAGTACGAGGGTTGTA+CGG | 0.497527 | 1.4:-6810187 | None:intergenic |
GCTGCGACATATGTGAGAAA+TGG | 0.501712 | 1.4:+6814214 | MS.gene058421:CDS |
TGATGCTTGGTTGCTTTCTG+TGG | 0.503077 | 1.4:+6812462 | MS.gene058421:CDS |
TTCTACCAGCAGTGTGATCC+CGG | 0.504757 | 1.4:+6810382 | MS.gene058421:CDS |
ACAACAACCATGGACGTTGT+AGG | 0.512436 | 1.4:+6810160 | None:intergenic |
ATGGAATGCAAGAAAAGGAT+TGG | 0.512817 | 1.4:+6812416 | MS.gene058421:CDS |
AAGTTGTTACAGGGTCTGGC+AGG | 0.518216 | 1.4:+6813457 | MS.gene058421:CDS |
AGAAGACCGACCGGTGGTGA+GGG | 0.523124 | 1.4:-6810257 | None:intergenic |
TAGAGATGGAATGCAAGAAA+AGG | 0.524287 | 1.4:+6812411 | MS.gene058421:CDS |
GAGCTTCCAGAGCCAGCATT+GGG | 0.524583 | 1.4:+6812376 | MS.gene058421:CDS |
TTAATTAAAGCCCTCACCAC+CGG | 0.530739 | 1.4:+6810247 | MS.gene058421:CDS |
AAGACTTCTTCGACAGTACG+AGG | 0.536014 | 1.4:-6810196 | None:intergenic |
TTGCAGTACACAGTGATGCT+TGG | 0.538841 | 1.4:+6812449 | MS.gene058421:CDS |
GAAGTCTTTCGAGATTTCAA+AGG | 0.539441 | 1.4:+6810211 | MS.gene058421:CDS |
ACAGGGTCTGGCAGGAAACA+AGG | 0.548267 | 1.4:+6813465 | MS.gene058421:CDS |
AGGTGTGGACGAGGAAGATG+AGG | 0.549480 | 1.4:+6814125 | MS.gene058421:CDS |
TGCTAGGTTTGGATTTGACA+AGG | 0.554851 | 1.4:+6812498 | MS.gene058421:CDS |
CAATCTTTGAAGTTGTTACA+GGG | 0.559430 | 1.4:+6813448 | MS.gene058421:CDS |
CGGAGCACCTACAACGTCCA+TGG | 0.562602 | 1.4:-6810167 | None:intergenic |
GCAAAGTTAATACCCAATGC+TGG | 0.563035 | 1.4:-6812388 | None:intergenic |
GCAGTCAAAGGATGAGGTTG+AGG | 0.565823 | 1.4:+6814089 | MS.gene058421:CDS |
ATATGTGAGAAATGGTTTCA+CGG | 0.569510 | 1.4:+6814222 | MS.gene058421:CDS |
GCAGATGCAGTCAAAGGATG+AGG | 0.569670 | 1.4:+6814083 | MS.gene058421:CDS |
TGAGCTTCCAGAGCCAGCAT+TGG | 0.570153 | 1.4:+6812375 | MS.gene058421:CDS |
CGTGAAGATTACTCCGGCAA+GGG | 0.576974 | 1.4:+6814251 | MS.gene058421:CDS |
TGGATTTCCGAGCGAGCAGT+GGG | 0.579516 | 1.4:+6812321 | MS.gene058421:CDS |
GGCAATGCAGATGCAGTCAA+AGG | 0.579948 | 1.4:+6814077 | MS.gene058421:CDS |
GCTGGCTCTGGAAGCTCAGG+CGG | 0.581111 | 1.4:-6812370 | None:intergenic |
GCGTGAAGATTACTCCGGCA+AGG | 0.589663 | 1.4:+6814250 | MS.gene058421:CDS |
GAGAAGACCGACCGGTGGTG+AGG | 0.592144 | 1.4:-6810258 | None:intergenic |
ATGGATTTCCGAGCGAGCAG+TGG | 0.601477 | 1.4:+6812320 | MS.gene058421:CDS |
TATTACCGGGATCACACTGC+TGG | 0.607631 | 1.4:-6810387 | None:intergenic |
GAGACTTTGTGTGGGGCATG+TGG | 0.613065 | 1.4:+6814159 | MS.gene058421:CDS |
AACACGGAGAGACTTTGTGT+GGG | 0.622939 | 1.4:+6814151 | MS.gene058421:CDS |
GGATGAAGATGGTGTAGGTG+TGG | 0.626967 | 1.4:+6814110 | MS.gene058421:CDS |
AGATGGTGTAGGTGTGGACG+AGG | 0.628142 | 1.4:+6814116 | MS.gene058421:CDS |
GAACACGGAGAGACTTTGTG+TGG | 0.630911 | 1.4:+6814150 | MS.gene058421:CDS |
GGAGGTGAATCTGCCAGCTG+AGG | 0.634327 | 1.4:+6812342 | MS.gene058421:CDS |
AGACTTCTTCGACAGTACGA+GGG | 0.643030 | 1.4:-6810195 | None:intergenic |
GATGAGGTTGAGGATGAAGA+TGG | 0.646194 | 1.4:+6814099 | MS.gene058421:CDS |
GAGGAAGATGAGGAAGAACA+CGG | 0.666720 | 1.4:+6814135 | MS.gene058421:CDS |
ATTTCCGAGCGAGCAGTGGG+AGG | 0.670558 | 1.4:+6812324 | MS.gene058421:CDS |
GTTGAGGATGAAGATGGTGT+AGG | 0.671969 | 1.4:+6814105 | MS.gene058421:CDS |
GTCTGGCAGGAAACAAGGAA+AGG | 0.676618 | 1.4:+6813470 | MS.gene058421:CDS |
ACACGGAGAGACTTTGTGTG+GGG | 0.707279 | 1.4:+6814152 | MS.gene058421:CDS |
AAAATGCGTGAAGATTACTC+CGG | 0.732353 | 1.4:+6814245 | MS.gene058421:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAGAAAATTATTTTATCATA+AGG | - | chr1.4:6811589-6811608 | None:intergenic | 10.0% |
!!! | TTTTCAATTAGTTTTAATTT+TGG | + | chr1.4:6812008-6812027 | MS.gene058421:intron | 10.0% |
!! | AAAATTGAAATGTTCATTTA+CGG | + | chr1.4:6811798-6811817 | MS.gene058421:intron | 15.0% |
!!! | AAAATTATTTTATCATAAGG+TGG | - | chr1.4:6811586-6811605 | None:intergenic | 15.0% |
!!! | AAATTATGTGATGTTTTATT+TGG | + | chr1.4:6812736-6812755 | MS.gene058421:intron | 15.0% |
!!! | AAATTATTTTATCATAAGGT+GGG | - | chr1.4:6811585-6811604 | None:intergenic | 15.0% |
!!! | AATTATGTGATGTTTTATTT+GGG | + | chr1.4:6812737-6812756 | MS.gene058421:intron | 15.0% |
!!! | ATTTATAATTTGTTGTATGA+TGG | + | chr1.4:6811494-6811513 | MS.gene058421:intron | 15.0% |
!!! | CAGTTAATTTTAATTTTTTC+AGG | + | chr1.4:6812052-6812071 | MS.gene058421:intron | 15.0% |
!!! | GACTTTTTTTATTTGAATTT+TGG | + | chr1.4:6812591-6812610 | MS.gene058421:intron | 15.0% |
!!! | TTGATTGTATTTTGTATTTT+TGG | + | chr1.4:6812246-6812265 | MS.gene058421:intron | 15.0% |
!!! | TTTTTTATTTGAATTTTGGT+TGG | + | chr1.4:6812595-6812614 | MS.gene058421:intron | 15.0% |
!! | AAGATAATCACTCTTATAAA+TGG | - | chr1.4:6812766-6812785 | None:intergenic | 20.0% |
!! | ACAGTGATAAAAAAAATCAA+AGG | + | chr1.4:6812974-6812993 | MS.gene058421:intron | 20.0% |
!! | ATCTGGAAAGAAAAAAAAAA+CGG | - | chr1.4:6810353-6810372 | None:intergenic | 20.0% |
!! | ATTTGCATATGAATTACATT+TGG | + | chr1.4:6811041-6811060 | MS.gene058421:intron | 20.0% |
!! | GTAAAAGAATCTATAATAGT+TGG | + | chr1.4:6810983-6811002 | MS.gene058421:intron | 20.0% |
!! | TTTAAACTTGAAGAATCTAA+TGG | - | chr1.4:6811689-6811708 | None:intergenic | 20.0% |
!! | TTTACGAAATAGAATATTAC+CGG | - | chr1.4:6810404-6810423 | None:intergenic | 20.0% |
!! | TTTAGTTAATCCTAATAGAA+AGG | + | chr1.4:6811749-6811768 | MS.gene058421:intron | 20.0% |
!!! | AATTATTTTATCATAAGGTG+GGG | - | chr1.4:6811584-6811603 | None:intergenic | 20.0% |
!!! | TGAAATTGAGTTACTTATTT+TGG | + | chr1.4:6811862-6811881 | MS.gene058421:intron | 20.0% |
!!! | TGTATGAAGATTTTAACTTA+GGG | + | chr1.4:6811912-6811931 | MS.gene058421:intron | 20.0% |
! | AAAAATCAAAGGAAAACTAG+TGG | + | chr1.4:6812985-6813004 | MS.gene058421:intron | 25.0% |
! | AAATCCAGTATCAATATTCA+AGG | - | chr1.4:6811948-6811967 | None:intergenic | 25.0% |
! | AATCAAAATGCTACCATTTA+TGG | + | chr1.4:6810839-6810858 | MS.gene058421:intron | 25.0% |
! | AATCCAGTATCAATATTCAA+GGG | - | chr1.4:6811947-6811966 | None:intergenic | 25.0% |
! | ATCAAAATGCTACCATTTAT+GGG | + | chr1.4:6810840-6810859 | MS.gene058421:intron | 25.0% |
! | ATTAATCACATGCAAAATTG+TGG | - | chr1.4:6810684-6810703 | None:intergenic | 25.0% |
! | CTAAAAGGAAAGAAACAATA+AGG | - | chr1.4:6813208-6813227 | None:intergenic | 25.0% |
! | CTAATAGAAAGGAATTATCT+AGG | + | chr1.4:6811760-6811779 | MS.gene058421:intron | 25.0% |
! | CTAGATAATTCCTTTCTATT+AGG | - | chr1.4:6811762-6811781 | None:intergenic | 25.0% |
! | CTTATATTCATCATTCAAGA+GGG | - | chr1.4:6812117-6812136 | None:intergenic | 25.0% |
! | GTACTATATTACACTTCATA+GGG | - | chr1.4:6811141-6811160 | None:intergenic | 25.0% |
! | GTATGGTATTTAATCAGTTA+AGG | + | chr1.4:6813981-6814000 | MS.gene058421:intron | 25.0% |
! | GTCATTTAATCTTGATTGAA+AGG | - | chr1.4:6813668-6813687 | None:intergenic | 25.0% |
! | GTGTCTATTATTTACATACA+TGG | + | chr1.4:6810739-6810758 | MS.gene058421:intron | 25.0% |
! | TGTAACTATAAGGGAAAATT+GGG | + | chr1.4:6810717-6810736 | MS.gene058421:intron | 25.0% |
! | TTACGAAATAGAATATTACC+GGG | - | chr1.4:6810403-6810422 | None:intergenic | 25.0% |
! | TTATATTCATCATTCAAGAG+GGG | - | chr1.4:6812116-6812135 | None:intergenic | 25.0% |
!! | AAGATACTCGTTTTACTAAA+AGG | - | chr1.4:6813223-6813242 | None:intergenic | 25.0% |
!! | AATTTTGCATGTGATTAATC+AGG | + | chr1.4:6810685-6810704 | MS.gene058421:intron | 25.0% |
!! | GAGAAATATAAAAGTTCTGA+AGG | - | chr1.4:6812180-6812199 | None:intergenic | 25.0% |
!! | TATCAACCAATCAAACATTT+TGG | - | chr1.4:6810938-6810957 | None:intergenic | 25.0% |
!!! | AAAATTTCTACTGTTTCTGT+TGG | + | chr1.4:6810880-6810899 | MS.gene058421:intron | 25.0% |
!!! | AATATAAAAGTTCTGAAGGT+TGG | - | chr1.4:6812176-6812195 | None:intergenic | 25.0% |
!!! | AATTGAGTTACTTATTTTGG+CGG | + | chr1.4:6811865-6811884 | MS.gene058421:intron | 25.0% |
!!! | AGCAAAACTTTATTTTGTTC+AGG | + | chr1.4:6811338-6811357 | MS.gene058421:intron | 25.0% |
!!! | CTGTATGAAGATTTTAACTT+AGG | + | chr1.4:6811911-6811930 | MS.gene058421:intron | 25.0% |
!!! | TGAAATTTTTGAGCAAATCA+AGG | - | chr1.4:6811460-6811479 | None:intergenic | 25.0% |
!!! | TTTTTTTTGCCATTCATTGA+TGG | + | chr1.4:6813318-6813337 | MS.gene058421:intron | 25.0% |
AACATAAGCAACAACAAGTA+CGG | - | chr1.4:6811556-6811575 | None:intergenic | 30.0% | |
AAGGAAAATCTTTGCCTTTA+TGG | + | chr1.4:6812301-6812320 | MS.gene058421:CDS | 30.0% | |
ACAATCAACAATTTCAACTG+TGG | - | chr1.4:6812234-6812253 | None:intergenic | 30.0% | |
ACTAAAATGCAAAGGATGAA+AGG | - | chr1.4:6812701-6812720 | None:intergenic | 30.0% | |
AGAAAAAACAGTTACAGAAG+TGG | + | chr1.4:6810496-6810515 | MS.gene058421:intron | 30.0% | |
ATATGTGAGAAATGGTTTCA+CGG | + | chr1.4:6814222-6814241 | MS.gene058421:CDS | 30.0% | |
ATGAAGTGTAATATAGTACG+CGG | + | chr1.4:6811142-6811161 | MS.gene058421:intron | 30.0% | |
CAAATCCAAATCAAACTCTA+AGG | + | chr1.4:6813524-6813543 | MS.gene058421:CDS | 30.0% | |
CGTACTATATTACACTTCAT+AGG | - | chr1.4:6811142-6811161 | None:intergenic | 30.0% | |
CTTACTTGAGTGTATGATAT+TGG | + | chr1.4:6813143-6813162 | MS.gene058421:intron | 30.0% | |
GAAAAAACAGTTACAGAAGT+GGG | + | chr1.4:6810497-6810516 | MS.gene058421:intron | 30.0% | |
GATTAAATACCATACCAATC+AGG | - | chr1.4:6813976-6813995 | None:intergenic | 30.0% | |
GCATATGAATTACATTTGGT+GGG | + | chr1.4:6811045-6811064 | MS.gene058421:intron | 30.0% | |
GCTAAAGAGTTATAGCATAA+TGG | + | chr1.4:6812852-6812871 | MS.gene058421:intron | 30.0% | |
GCTTATATTCATCATTCAAG+AGG | - | chr1.4:6812118-6812137 | None:intergenic | 30.0% | |
GCTTGTACTATTGTTCATTT+AGG | + | chr1.4:6810772-6810791 | MS.gene058421:intron | 30.0% | |
GGTTTCCAAGAAAATAGATA+AGG | - | chr1.4:6812155-6812174 | None:intergenic | 30.0% | |
GTAACAACTTCAAAGATTGT+TGG | - | chr1.4:6813447-6813466 | None:intergenic | 30.0% | |
GTGTAACTATAAGGGAAAAT+TGG | + | chr1.4:6810716-6810735 | MS.gene058421:intron | 30.0% | |
TAAACATATATCCCTCTCTA+TGG | + | chr1.4:6813912-6813931 | MS.gene058421:intron | 30.0% | |
TAACCTTAATACATCGTACA+TGG | - | chr1.4:6811207-6811226 | None:intergenic | 30.0% | |
TAGTGAAAAACTAACAGTAC+TGG | - | chr1.4:6812789-6812808 | None:intergenic | 30.0% | |
TCAAACACGTGATAAAAACA+AGG | - | chr1.4:6810582-6810601 | None:intergenic | 30.0% | |
TCAATTCTAAGTCAAAGTTG+TGG | + | chr1.4:6810610-6810629 | MS.gene058421:intron | 30.0% | |
TGCATATGAATTACATTTGG+TGG | + | chr1.4:6811044-6811063 | MS.gene058421:intron | 30.0% | |
TGTTGCATGTGTAACTATAA+GGG | + | chr1.4:6810708-6810727 | MS.gene058421:intron | 30.0% | |
! | GATTATCGACTAAAATGCAA+AGG | - | chr1.4:6812709-6812728 | None:intergenic | 30.0% |
!! | ACAATCTTTGAAGTTGTTAC+AGG | + | chr1.4:6813447-6813466 | MS.gene058421:CDS | 30.0% |
!! | CAATCTTTGAAGTTGTTACA+GGG | + | chr1.4:6813448-6813467 | MS.gene058421:CDS | 30.0% |
!! | CTTAGAGTTTGATTTGGATT+TGG | - | chr1.4:6813526-6813545 | None:intergenic | 30.0% |
!! | CTTTCTGTGGCTTTTTATTT+CGG | + | chr1.4:6812475-6812494 | MS.gene058421:CDS | 30.0% |
!! | GCATTACTTTTGTCAAATAG+CGG | + | chr1.4:6812828-6812847 | MS.gene058421:intron | 30.0% |
!! | TAGTAGCTTGTCTGTTATTT+TGG | + | chr1.4:6812084-6812103 | MS.gene058421:intron | 30.0% |
!! | TATCTGCTATTTCACACATT+GGG | + | chr1.4:6812909-6812928 | MS.gene058421:intron | 30.0% |
!!! | ATTGAGTTACTTATTTTGGC+GGG | + | chr1.4:6811866-6811885 | MS.gene058421:intron | 30.0% |
AAAAAAAAGAGAAGACCGAC+CGG | - | chr1.4:6810269-6810288 | None:intergenic | 35.0% | |
AAAAGAGAAGAGGGCTATTT+AGG | + | chr1.4:6811291-6811310 | MS.gene058421:intron | 35.0% | |
AAAATGCGTGAAGATTACTC+CGG | + | chr1.4:6814245-6814264 | MS.gene058421:CDS | 35.0% | |
ACATAAGCAACAACAAGTAC+GGG | - | chr1.4:6811555-6811574 | None:intergenic | 35.0% | |
ACTTTCTTGCTCCAAAAACA+AGG | - | chr1.4:6813851-6813870 | None:intergenic | 35.0% | |
AGATAGGCTTCAATAGATAG+TGG | + | chr1.4:6811828-6811847 | MS.gene058421:intron | 35.0% | |
ATGGAATGCAAGAAAAGGAT+TGG | + | chr1.4:6812416-6812435 | MS.gene058421:CDS | 35.0% | |
ATTGAGATGCTTCCCATAAA+TGG | - | chr1.4:6810855-6810874 | None:intergenic | 35.0% | |
CATCCATGTACGATGTATTA+AGG | + | chr1.4:6811201-6811220 | MS.gene058421:intron | 35.0% | |
CTGTGGAACTTAAGCATATT+AGG | - | chr1.4:6812217-6812236 | None:intergenic | 35.0% | |
GAAAGCAAACCATCAATGAA+TGG | - | chr1.4:6813330-6813349 | None:intergenic | 35.0% | |
GAAGTCTTTCGAGATTTCAA+AGG | + | chr1.4:6810211-6810230 | MS.gene058421:CDS | 35.0% | |
GATCTGAATCTGATGTAGTA+TGG | + | chr1.4:6811405-6811424 | MS.gene058421:intron | 35.0% | |
GCTTACCTTAGAGTTTGATT+TGG | - | chr1.4:6813532-6813551 | None:intergenic | 35.0% | |
GGTATTAACTTTGCTAGAGA+TGG | + | chr1.4:6812397-6812416 | MS.gene058421:CDS | 35.0% | |
GGTTGAACCTAAATATGATG+CGG | - | chr1.4:6811534-6811553 | None:intergenic | 35.0% | |
GTGAGTCCAAAATGTTTGAT+TGG | + | chr1.4:6810929-6810948 | MS.gene058421:intron | 35.0% | |
GTGTTGCATGTGTAACTATA+AGG | + | chr1.4:6810707-6810726 | MS.gene058421:intron | 35.0% | |
TACATCCCAAAAAGAGAAGA+GGG | + | chr1.4:6811282-6811301 | MS.gene058421:intron | 35.0% | |
TAGAGATGGAATGCAAGAAA+AGG | + | chr1.4:6812411-6812430 | MS.gene058421:CDS | 35.0% | |
TCACCCTTGAATATTGATAC+TGG | + | chr1.4:6811941-6811960 | MS.gene058421:intron | 35.0% | |
TGATACTAAGAGGACTTTGA+GGG | + | chr1.4:6813583-6813602 | MS.gene058421:intron | 35.0% | |
TGTACTTATCATCTCTTTGC+AGG | + | chr1.4:6813391-6813410 | MS.gene058421:intron | 35.0% | |
TGTTCAGGAAGTTCATTTCT+TGG | + | chr1.4:6811353-6811372 | MS.gene058421:intron | 35.0% | |
TTAATGCCCAAAATACGTTG+CGG | + | chr1.4:6811173-6811192 | MS.gene058421:intron | 35.0% | |
TTACATCCCAAAAAGAGAAG+AGG | + | chr1.4:6811281-6811300 | MS.gene058421:intron | 35.0% | |
TTGATACTGGATTTAGTCTG+AGG | + | chr1.4:6811954-6811973 | MS.gene058421:intron | 35.0% | |
TTGCTCCAAAAACAAGGATT+CGG | - | chr1.4:6813845-6813864 | None:intergenic | 35.0% | |
! | AAATAGCCCTCTTCTCTTTT+TGG | - | chr1.4:6811291-6811310 | None:intergenic | 35.0% |
! | AATAGCCCTCTTCTCTTTTT+GGG | - | chr1.4:6811290-6811309 | None:intergenic | 35.0% |
! | GCCAAAGTTTTCAAAACCAA+TGG | + | chr1.4:6814050-6814069 | MS.gene058421:CDS | 35.0% |
! | GTTAAGGCTGTTATCTCTTT+TGG | + | chr1.4:6813997-6814016 | MS.gene058421:intron | 35.0% |
! | GTTTTCAAAACCAATGGCAA+TGG | + | chr1.4:6814056-6814075 | MS.gene058421:CDS | 35.0% |
! | TATTTTATCATAAGGTGGGG+TGG | - | chr1.4:6811581-6811600 | None:intergenic | 35.0% |
! | TGCTGCCTTATCTATTTTCT+TGG | + | chr1.4:6812147-6812166 | MS.gene058421:intron | 35.0% |
! | TTTCACACATTGGGGATTTT+CGG | + | chr1.4:6812918-6812937 | MS.gene058421:intron | 35.0% |
!! | AGAAAAGGATTGGCTATCTT+TGG | + | chr1.4:6812426-6812445 | MS.gene058421:CDS | 35.0% |
!! | ATCTGCTATTTCACACATTG+GGG | + | chr1.4:6812910-6812929 | MS.gene058421:intron | 35.0% |
!! | CTATCTGCTATTTCACACAT+TGG | + | chr1.4:6812908-6812927 | MS.gene058421:intron | 35.0% |
!! | GTCTGAGGTATCTATTTTCT+TGG | + | chr1.4:6811969-6811988 | MS.gene058421:intron | 35.0% |
!! | TCAATAGATAGTGGATGTGA+TGG | + | chr1.4:6811837-6811856 | MS.gene058421:intron | 35.0% |
!! | TTTATGGGAAGCATCTCAAT+TGG | + | chr1.4:6810855-6810874 | MS.gene058421:intron | 35.0% |
!!! | GCCATTGGTTTTGAAAACTT+TGG | - | chr1.4:6814054-6814073 | None:intergenic | 35.0% |
!!! | TTTTATTTCGGTGCTAGGTT+TGG | + | chr1.4:6812487-6812506 | MS.gene058421:CDS | 35.0% |
AAATGACTCACGCTATGACT+TGG | + | chr1.4:6813681-6813700 | MS.gene058421:intron | 40.0% | |
AACTGTGTCTGTTTCCTGAT+TGG | + | chr1.4:6813959-6813978 | MS.gene058421:intron | 40.0% | |
ATATGATGCGGCATAACCTT+TGG | - | chr1.4:6811522-6811541 | None:intergenic | 40.0% | |
CACTATTCGCTGATACTAAG+AGG | + | chr1.4:6813573-6813592 | MS.gene058421:intron | 40.0% | |
CATTTACGGCTTCAGAAGAT+AGG | + | chr1.4:6811812-6811831 | MS.gene058421:intron | 40.0% | |
CTCTTAGTATCAGCGAATAG+TGG | - | chr1.4:6813575-6813594 | None:intergenic | 40.0% | |
CTGATACTAAGAGGACTTTG+AGG | + | chr1.4:6813582-6813601 | MS.gene058421:intron | 40.0% | |
CTGATGTAGTATGGACTTCT+GGG | + | chr1.4:6811414-6811433 | MS.gene058421:intron | 40.0% | |
GAAAATAGATAAGGCAGCAC+AGG | - | chr1.4:6812146-6812165 | None:intergenic | 40.0% | |
GATTGAAAGGTGATCTCAGA+CGG | - | chr1.4:6813655-6813674 | None:intergenic | 40.0% | |
GCAAAGTTAATACCCAATGC+TGG | - | chr1.4:6812391-6812410 | None:intergenic | 40.0% | |
GGTTATGCCGCATCATATTT+AGG | + | chr1.4:6811524-6811543 | MS.gene058421:intron | 40.0% | |
TAACAGACAAGCTACTATCG+TGG | - | chr1.4:6812081-6812100 | None:intergenic | 40.0% | |
TATGATGCGGCATAACCTTT+GGG | - | chr1.4:6811521-6811540 | None:intergenic | 40.0% | |
TCAAAGGAAAACTAGTGGAG+AGG | + | chr1.4:6812990-6813009 | MS.gene058421:intron | 40.0% | |
TCTGATGTAGTATGGACTTC+TGG | + | chr1.4:6811413-6811432 | MS.gene058421:intron | 40.0% | |
TGCTAGGTTTGGATTTGACA+AGG | + | chr1.4:6812498-6812517 | MS.gene058421:CDS | 40.0% | |
TGGTAGAATACATCGACATC+TGG | - | chr1.4:6810370-6810389 | None:intergenic | 40.0% | |
TGTCTGTTTCCTGATTGGTA+TGG | + | chr1.4:6813964-6813983 | MS.gene058421:intron | 40.0% | |
TTAATTAAAGCCCTCACCAC+CGG | + | chr1.4:6810247-6810266 | MS.gene058421:CDS | 40.0% | |
TTGGATTTGACAAGGCTGAT+AGG | + | chr1.4:6812506-6812525 | MS.gene058421:CDS | 40.0% | |
TTTACCCTTTCACAAAGCTG+CGG | + | chr1.4:6812541-6812560 | MS.gene058421:intron | 40.0% | |
! | AAGCATATTAGGTGCTGCAT+TGG | - | chr1.4:6812206-6812225 | None:intergenic | 40.0% |
! | ACTGCCAACAAACTTTTGAG+AGG | - | chr1.4:6813285-6813304 | None:intergenic | 40.0% |
! | CAAGCTTTGTGATACAGAGA+AGG | + | chr1.4:6812282-6812301 | MS.gene058421:intron | 40.0% |
! | CTGGAAGTATGCAAGCATAT+CGG | - | chr1.4:6811714-6811733 | None:intergenic | 40.0% |
! | TAAGAGGACTTTGAGGGATT+TGG | + | chr1.4:6813589-6813608 | MS.gene058421:intron | 40.0% |
! | TTTGAAGTTGTTACAGGGTC+TGG | + | chr1.4:6813453-6813472 | MS.gene058421:CDS | 40.0% |
!! | CAACAAACTTTTGAGAGGCA+GGG | - | chr1.4:6813280-6813299 | None:intergenic | 40.0% |
!! | GATGGTTTGCTTTCTCAAGA+TGG | + | chr1.4:6813336-6813355 | MS.gene058421:intron | 40.0% |
!! | TTGTTGTATGATGGACCCAA+AGG | + | chr1.4:6811503-6811522 | MS.gene058421:intron | 40.0% |
!!! | AATTTTGGCTACGATGCTTC+AGG | + | chr1.4:6812023-6812042 | MS.gene058421:intron | 40.0% |
!!! | GAGATCCGAATCCTTGTTTT+TGG | + | chr1.4:6813837-6813856 | MS.gene058421:intron | 40.0% |
!!! | GATAGTGTTGCTGTTTTCAG+AGG | - | chr1.4:6812893-6812912 | None:intergenic | 40.0% |
!!! | GGTTTTGAAAACTTTGGCTG+AGG | - | chr1.4:6814048-6814067 | None:intergenic | 40.0% |
!!! | TGGCTTTTTATTTCGGTGCT+AGG | + | chr1.4:6812482-6812501 | MS.gene058421:CDS | 40.0% |
AAGACTTCTTCGACAGTACG+AGG | - | chr1.4:6810199-6810218 | None:intergenic | 45.0% | |
AAGGATTCACACATGTGCCA+CGG | - | chr1.4:6813809-6813828 | None:intergenic | 45.0% | |
AGACTTCTTCGACAGTACGA+GGG | - | chr1.4:6810198-6810217 | None:intergenic | 45.0% | |
ATCTGCATTGCCATTGCCAT+TGG | - | chr1.4:6814069-6814088 | None:intergenic | 45.0% | |
ATGTGTGAATCCTTTGCTGC+AGG | + | chr1.4:6813815-6813834 | MS.gene058421:intron | 45.0% | |
CCTGCCTCTCAAAAGTTTGT+TGG | + | chr1.4:6813278-6813297 | MS.gene058421:intron | 45.0% | |
GAGGAAGATGAGGAAGAACA+CGG | + | chr1.4:6814135-6814154 | MS.gene058421:CDS | 45.0% | |
GATGAGGTTGAGGATGAAGA+TGG | + | chr1.4:6814099-6814118 | MS.gene058421:CDS | 45.0% | |
GCTGCGACATATGTGAGAAA+TGG | + | chr1.4:6814214-6814233 | MS.gene058421:CDS | 45.0% | |
GTTGAGGATGAAGATGGTGT+AGG | + | chr1.4:6814105-6814124 | MS.gene058421:CDS | 45.0% | |
TAAATCTTATGCAGCAGCGC+TGG | - | chr1.4:6811733-6811752 | None:intergenic | 45.0% | |
TTGCAGTACACAGTGATGCT+TGG | + | chr1.4:6812449-6812468 | MS.gene058421:CDS | 45.0% | |
! | AAAGCCGCAGCTTTGTGAAA+GGG | - | chr1.4:6812548-6812567 | None:intergenic | 45.0% |
! | ACTTTCTAGCGCCATAGAGA+GGG | - | chr1.4:6813926-6813945 | None:intergenic | 45.0% |
! | GCAATGCCGCAACGTATTTT+GGG | - | chr1.4:6811182-6811201 | None:intergenic | 45.0% |
! | GCAGCTTTGTGAAAGGGTAA+AGG | - | chr1.4:6812542-6812561 | None:intergenic | 45.0% |
! | TAAAGCCGCAGCTTTGTGAA+AGG | - | chr1.4:6812549-6812568 | None:intergenic | 45.0% |
! | TAGTCTAGTTTGCATGACCG+TGG | + | chr1.4:6813789-6813808 | MS.gene058421:intron | 45.0% |
! | TGATGCTTGGTTGCTTTCTG+TGG | + | chr1.4:6812462-6812481 | MS.gene058421:CDS | 45.0% |
! | TGCAATGCCGCAACGTATTT+TGG | - | chr1.4:6811183-6811202 | None:intergenic | 45.0% |
!! | CCAACAAACTTTTGAGAGGC+AGG | - | chr1.4:6813281-6813300 | None:intergenic | 45.0% |
!! | TTAATACCCAATGCTGGCTC+TGG | - | chr1.4:6812385-6812404 | None:intergenic | 45.0% |
!!! | AATTTTTTTTACAAAAAAAT+AGG | - | chr1.4:6810314-6810333 | None:intergenic | 5.0% |
AAAAAGAGAAGACCGACCGG+TGG | - | chr1.4:6810266-6810285 | None:intergenic | 50.0% | |
AAGTTGTTACAGGGTCTGGC+AGG | + | chr1.4:6813457-6813476 | MS.gene058421:CDS | 50.0% | |
ACCATGGATATCCAGACTGC+AGG | - | chr1.4:6813619-6813638 | None:intergenic | 50.0% | |
ATTCGGATCTCCTGCAGCAA+AGG | - | chr1.4:6813828-6813847 | None:intergenic | 50.0% | |
CCATGGATATCCAGACTGCA+GGG | - | chr1.4:6813618-6813637 | None:intergenic | 50.0% | |
CGTGAAGATTACTCCGGCAA+GGG | + | chr1.4:6814251-6814270 | MS.gene058421:CDS | 50.0% | |
GATTTGGATTCCCTGCAGTC+TGG | + | chr1.4:6813605-6813624 | MS.gene058421:intron | 50.0% | |
GCAGATGCAGTCAAAGGATG+AGG | + | chr1.4:6814083-6814102 | MS.gene058421:CDS | 50.0% | |
GCAGTCAAAGGATGAGGTTG+AGG | + | chr1.4:6814089-6814108 | MS.gene058421:CDS | 50.0% | |
GCGGCTTTACTCTGCTCAAT+AGG | + | chr1.4:6812560-6812579 | MS.gene058421:intron | 50.0% | |
GCTCGCTCGGAAATCCATAA+AGG | - | chr1.4:6812318-6812337 | None:intergenic | 50.0% | |
GGATGAAGATGGTGTAGGTG+TGG | + | chr1.4:6814110-6814129 | MS.gene058421:CDS | 50.0% | |
GGCAATGCAGATGCAGTCAA+AGG | + | chr1.4:6814077-6814096 | MS.gene058421:CDS | 50.0% | |
GGTGGGTCATAACAAGAAGC+TGG | + | chr1.4:6811062-6811081 | MS.gene058421:intron | 50.0% | |
GTCTGGCAGGAAACAAGGAA+AGG | + | chr1.4:6813470-6813489 | MS.gene058421:CDS | 50.0% | |
TATTACCGGGATCACACTGC+TGG | - | chr1.4:6810390-6810409 | None:intergenic | 50.0% | |
TCGACAGTACGAGGGTTGTA+CGG | - | chr1.4:6810190-6810209 | None:intergenic | 50.0% | |
TGCTGTTGCTGCGTTTGTCA+TGG | + | chr1.4:6811608-6811627 | MS.gene058421:intron | 50.0% | |
TTCTACCAGCAGTGTGATCC+CGG | + | chr1.4:6810382-6810401 | MS.gene058421:CDS | 50.0% | |
TTGATATGCTCAGCCCTTGC+CGG | - | chr1.4:6814267-6814286 | None:intergenic | 50.0% | |
! | AGAAAGTGTGTCGTCTCGTC+TGG | + | chr1.4:6813728-6813747 | MS.gene058421:intron | 50.0% |
! | ATTGGGGATTTTCGGCGTTC+TGG | + | chr1.4:6812926-6812945 | MS.gene058421:intron | 50.0% |
! | GACTTTCTAGCGCCATAGAG+AGG | - | chr1.4:6813927-6813946 | None:intergenic | 50.0% |
ACAGGGTCTGGCAGGAAACA+AGG | + | chr1.4:6813465-6813484 | MS.gene058421:CDS | 55.0% | |
AGATGGTGTAGGTGTGGACG+AGG | + | chr1.4:6814116-6814135 | MS.gene058421:CDS | 55.0% | |
AGGTGTGGACGAGGAAGATG+AGG | + | chr1.4:6814125-6814144 | MS.gene058421:CDS | 55.0% | |
ATGGATTTCCGAGCGAGCAG+TGG | + | chr1.4:6812320-6812339 | MS.gene058421:CDS | 55.0% | |
CCCTGCAGTCTGGATATCCA+TGG | + | chr1.4:6813615-6813634 | MS.gene058421:intron | 55.0% | |
CGGTGCAGATTGCTTGACCA+TGG | - | chr1.4:6813635-6813654 | None:intergenic | 55.0% | |
GAGCTTCCAGAGCCAGCATT+GGG | + | chr1.4:6812376-6812395 | MS.gene058421:CDS | 55.0% | |
GCGTGAAGATTACTCCGGCA+AGG | + | chr1.4:6814250-6814269 | MS.gene058421:CDS | 55.0% | |
GCTATGCAGCTGACGAGTTC+TGG | + | chr1.4:6814187-6814206 | MS.gene058421:CDS | 55.0% | |
GCTCTCTTGTTGCTGCAAGC+TGG | - | chr1.4:6814303-6814322 | None:intergenic | 55.0% | |
GTCGTAGACACGTGTGCAGT+TGG | + | chr1.4:6813021-6813040 | MS.gene058421:intron | 55.0% | |
TGAGCTTCCAGAGCCAGCAT+TGG | + | chr1.4:6812375-6812394 | MS.gene058421:CDS | 55.0% | |
TGGATTTCCGAGCGAGCAGT+GGG | + | chr1.4:6812321-6812340 | MS.gene058421:CDS | 55.0% | |
TTAAAGCCCTCACCACCGGT+CGG | + | chr1.4:6810251-6810270 | MS.gene058421:intron | 55.0% | |
!! | AATGCTGGCTCTGGAAGCTC+AGG | - | chr1.4:6812376-6812395 | None:intergenic | 55.0% |
AGAAGACCGACCGGTGGTGA+GGG | - | chr1.4:6810260-6810279 | None:intergenic | 60.0% | |
ATTTCCGAGCGAGCAGTGGG+AGG | + | chr1.4:6812324-6812343 | MS.gene058421:CDS | 60.0% | |
GGAGGTGAATCTGCCAGCTG+AGG | + | chr1.4:6812342-6812361 | MS.gene058421:CDS | 60.0% | |
TTCACCTCCCACTGCTCGCT+CGG | - | chr1.4:6812331-6812350 | None:intergenic | 60.0% | |
GAGAAGACCGACCGGTGGTG+AGG | - | chr1.4:6810261-6810280 | None:intergenic | 65.0% | |
TCAGGCGGCACTTCCTCAGC+TGG | - | chr1.4:6812358-6812377 | None:intergenic | 65.0% | |
!! | GCTGGCTCTGGAAGCTCAGG+CGG | - | chr1.4:6812373-6812392 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 6810169 | 6814332 | 6810169 | ID=MS.gene058421 |
chr1.4 | mRNA | 6810169 | 6814332 | 6810169 | ID=MS.gene058421.t1;Parent=MS.gene058421 |
chr1.4 | exon | 6810169 | 6810268 | 6810169 | ID=MS.gene058421.t1.exon1;Parent=MS.gene058421.t1 |
chr1.4 | CDS | 6810169 | 6810268 | 6810169 | ID=cds.MS.gene058421.t1;Parent=MS.gene058421.t1 |
chr1.4 | exon | 6810371 | 6810403 | 6810371 | ID=MS.gene058421.t1.exon2;Parent=MS.gene058421.t1 |
chr1.4 | CDS | 6810371 | 6810403 | 6810371 | ID=cds.MS.gene058421.t1;Parent=MS.gene058421.t1 |
chr1.4 | exon | 6812299 | 6812527 | 6812299 | ID=MS.gene058421.t1.exon3;Parent=MS.gene058421.t1 |
chr1.4 | CDS | 6812299 | 6812527 | 6812299 | ID=cds.MS.gene058421.t1;Parent=MS.gene058421.t1 |
chr1.4 | exon | 6813413 | 6813545 | 6813413 | ID=MS.gene058421.t1.exon4;Parent=MS.gene058421.t1 |
chr1.4 | CDS | 6813413 | 6813545 | 6813413 | ID=cds.MS.gene058421.t1;Parent=MS.gene058421.t1 |
chr1.4 | exon | 6814033 | 6814332 | 6814033 | ID=MS.gene058421.t1.exon5;Parent=MS.gene058421.t1 |
chr1.4 | CDS | 6814033 | 6814332 | 6814033 | ID=cds.MS.gene058421.t1;Parent=MS.gene058421.t1 |
Gene Sequence |
Protein sequence |