Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33049.t1 | XP_024631067.1 | 99.6 | 264 | 1 | 0 | 1 | 264 | 1 | 264 | 5.90E-113 | 417.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33049.t1 | Q5XEM9 | 83.8 | 259 | 38 | 1 | 6 | 264 | 6 | 260 | 6.6e-97 | 355.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33049.t1 | A0A072VES1 | 99.2 | 264 | 1 | 1 | 1 | 264 | 1 | 263 | 8.0e-112 | 412.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene33049.t1 | TF | Alfin-like |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene058421 | MS.gene33049 | 0.996776 | 4.58E-232 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33049.t1 | MTR_1g015185 | 99.242 | 264 | 1 | 1 | 1 | 264 | 1 | 263 | 0.0 | 543 |
MS.gene33049.t1 | MTR_8g019520 | 76.923 | 260 | 48 | 3 | 8 | 264 | 7 | 257 | 1.18e-130 | 370 |
MS.gene33049.t1 | MTR_8g019520 | 78.378 | 259 | 45 | 3 | 8 | 264 | 7 | 256 | 2.40e-130 | 369 |
MS.gene33049.t1 | MTR_2g040990 | 74.809 | 262 | 49 | 3 | 5 | 264 | 7 | 253 | 5.05e-125 | 356 |
MS.gene33049.t1 | MTR_1g015185 | 98.788 | 165 | 1 | 1 | 1 | 165 | 1 | 164 | 5.01e-118 | 336 |
MS.gene33049.t1 | MTR_4g134510 | 70.588 | 255 | 64 | 3 | 10 | 263 | 10 | 254 | 3.74e-113 | 326 |
MS.gene33049.t1 | MTR_2g099500 | 72.441 | 254 | 60 | 3 | 11 | 263 | 6 | 250 | 7.29e-111 | 320 |
MS.gene33049.t1 | MTR_4g015830 | 62.500 | 256 | 75 | 5 | 9 | 264 | 6 | 240 | 8.71e-95 | 279 |
MS.gene33049.t1 | MTR_7g068590 | 62.500 | 256 | 77 | 6 | 9 | 264 | 6 | 242 | 2.12e-92 | 273 |
MS.gene33049.t1 | MTR_8g066480 | 51.034 | 145 | 43 | 4 | 121 | 264 | 29 | 146 | 1.14e-28 | 107 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33049.t1 | AT5G20510 | 71.591 | 264 | 71 | 2 | 1 | 264 | 1 | 260 | 5.83e-124 | 353 |
MS.gene33049.t1 | AT3G42790 | 72.348 | 264 | 57 | 3 | 1 | 263 | 1 | 249 | 1.04e-122 | 350 |
MS.gene33049.t1 | AT2G02470 | 70.196 | 255 | 69 | 3 | 10 | 264 | 9 | 256 | 8.88e-111 | 320 |
MS.gene33049.t1 | AT2G02470 | 67.578 | 256 | 65 | 3 | 10 | 264 | 9 | 247 | 2.23e-109 | 316 |
MS.gene33049.t1 | AT5G26210 | 78.077 | 260 | 49 | 1 | 4 | 263 | 3 | 254 | 2.05e-108 | 314 |
MS.gene33049.t1 | AT1G14510 | 67.063 | 252 | 71 | 2 | 10 | 261 | 9 | 248 | 6.13e-107 | 310 |
MS.gene33049.t1 | AT5G20510 | 71.364 | 220 | 59 | 2 | 45 | 264 | 4 | 219 | 4.11e-98 | 286 |
MS.gene33049.t1 | AT5G05610 | 61.961 | 255 | 76 | 5 | 9 | 263 | 7 | 240 | 1.33e-97 | 286 |
MS.gene33049.t1 | AT5G05610 | 61.961 | 255 | 76 | 5 | 9 | 263 | 7 | 240 | 1.33e-97 | 286 |
MS.gene33049.t1 | AT3G11200 | 61.977 | 263 | 82 | 3 | 1 | 263 | 1 | 245 | 1.27e-96 | 283 |
MS.gene33049.t1 | AT5G20510 | 77.914 | 163 | 36 | 0 | 6 | 168 | 6 | 168 | 1.42e-82 | 246 |
MS.gene33049.t1 | AT3G11200 | 62.100 | 219 | 65 | 3 | 45 | 263 | 32 | 232 | 3.19e-80 | 241 |
MS.gene33049.t1 | AT2G02470 | 79.333 | 150 | 30 | 1 | 10 | 159 | 9 | 157 | 3.00e-72 | 222 |
Find 65 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAGGAAAATCTTTGCCTTTA+TGG | 0.094878 | 1.1:+6579612 | MS.gene33049:CDS |
AGAAAAGGATTGGCTATCTT+TGG | 0.280443 | 1.1:+6579737 | MS.gene33049:CDS |
GCTATGCAGCTGACGAGTTC+TGG | 0.291054 | 1.1:+6581498 | MS.gene33049:CDS |
ACAATCTTTGAAGTTGTTAC+AGG | 0.306235 | 1.1:+6580758 | MS.gene33049:CDS |
CTTAGAGTTTGATTTGGATT+TGG | 0.307586 | 1.1:-6580834 | None:intergenic |
TTTGAAGTTGTTACAGGGTC+TGG | 0.380524 | 1.1:+6580764 | MS.gene33049:CDS |
TTGATATGCTCAGCCCTTGC+CGG | 0.382099 | 1.1:-6581575 | None:intergenic |
GCTTACCTTAGAGTTTGATT+TGG | 0.384520 | 1.1:-6580840 | None:intergenic |
GTAACAACTTCAAAGATTGT+TGG | 0.390377 | 1.1:-6580755 | None:intergenic |
CAAATCCAAATCAAACTCTA+AGG | 0.411797 | 1.1:+6580835 | MS.gene33049:CDS |
TTAATACCCAATGCTGGCTC+TGG | 0.427895 | 1.1:-6579693 | None:intergenic |
TTGGATTTGACAAGGCTGAT+AGG | 0.428891 | 1.1:+6579817 | MS.gene33049:CDS |
GCTCGCTCGGAAATCCATAA+AGG | 0.438097 | 1.1:-6579626 | None:intergenic |
GGTATTAACTTTGCTAGAGA+TGG | 0.438852 | 1.1:+6579708 | MS.gene33049:CDS |
TCAGGCGGCACTTCCTCAGC+TGG | 0.444344 | 1.1:-6579666 | None:intergenic |
AATGCTGGCTCTGGAAGCTC+AGG | 0.453734 | 1.1:-6579684 | None:intergenic |
ATCTGCATTGCCATTGCCAT+TGG | 0.459684 | 1.1:-6581377 | None:intergenic |
GCTCTCTTGTTGCTGCAAGC+TGG | 0.467608 | 1.1:-6581611 | None:intergenic |
TTCACCTCCCACTGCTCGCT+CGG | 0.467752 | 1.1:-6579639 | None:intergenic |
TCGACAGTACGAGGGTTGTA+CGG | 0.497527 | 1.1:-6577499 | None:intergenic |
GCTGCGACATATGTGAGAAA+TGG | 0.501712 | 1.1:+6581525 | MS.gene33049:CDS |
TGATGCTTGGTTGCTTTCTG+TGG | 0.503077 | 1.1:+6579773 | MS.gene33049:CDS |
TTCTACCAGCAGTGTGATCC+CGG | 0.504757 | 1.1:+6577691 | MS.gene33049:CDS |
ACAACAACCATGGACGTTGT+AGG | 0.512436 | 1.1:+6577472 | None:intergenic |
ATGGAATGCAAGAAAAGGAT+TGG | 0.512817 | 1.1:+6579727 | MS.gene33049:CDS |
AAGTTGTTACAGGGTCTGGC+AGG | 0.518216 | 1.1:+6580768 | MS.gene33049:CDS |
AGAAGACCGACCGGTGGTGA+GGG | 0.523124 | 1.1:-6577569 | None:intergenic |
TAGAGATGGAATGCAAGAAA+AGG | 0.524287 | 1.1:+6579722 | MS.gene33049:CDS |
GAGCTTCCAGAGCCAGCATT+GGG | 0.524583 | 1.1:+6579687 | MS.gene33049:CDS |
TTAATTAAAGCCCTCACCAC+CGG | 0.530739 | 1.1:+6577559 | MS.gene33049:CDS |
AAGACTTCTTCGACAGTACG+AGG | 0.536014 | 1.1:-6577508 | None:intergenic |
TTGCAGTACACAGTGATGCT+TGG | 0.538841 | 1.1:+6579760 | MS.gene33049:CDS |
GAAGTCTTTCGAGATTTCAA+AGG | 0.539441 | 1.1:+6577523 | MS.gene33049:CDS |
ACAGGGTCTGGCAGGAAACA+AGG | 0.548267 | 1.1:+6580776 | MS.gene33049:CDS |
AGGTGTGGACGAGGAAGATG+AGG | 0.549480 | 1.1:+6581436 | MS.gene33049:CDS |
TGCTAGGTTTGGATTTGACA+AGG | 0.554851 | 1.1:+6579809 | MS.gene33049:CDS |
CAATCTTTGAAGTTGTTACA+GGG | 0.559430 | 1.1:+6580759 | MS.gene33049:CDS |
CGGAGCACCTACAACGTCCA+TGG | 0.562602 | 1.1:-6577479 | None:intergenic |
GCAAAGTTAATACCCAATGC+TGG | 0.563035 | 1.1:-6579699 | None:intergenic |
GCAGTCAAAGGATGAGGTTG+AGG | 0.565823 | 1.1:+6581400 | MS.gene33049:CDS |
ATATGTGAGAAATGGTTTCA+CGG | 0.569510 | 1.1:+6581533 | MS.gene33049:CDS |
GCAGATGCAGTCAAAGGATG+AGG | 0.569670 | 1.1:+6581394 | MS.gene33049:CDS |
TGAGCTTCCAGAGCCAGCAT+TGG | 0.570153 | 1.1:+6579686 | MS.gene33049:CDS |
CGTGAAGATTACTCCGGCAA+GGG | 0.576974 | 1.1:+6581562 | MS.gene33049:CDS |
TGGATTTCCGAGCGAGCAGT+GGG | 0.579516 | 1.1:+6579632 | MS.gene33049:CDS |
GGCAATGCAGATGCAGTCAA+AGG | 0.579948 | 1.1:+6581388 | MS.gene33049:CDS |
GCTGGCTCTGGAAGCTCAGG+CGG | 0.581111 | 1.1:-6579681 | None:intergenic |
GCGTGAAGATTACTCCGGCA+AGG | 0.589663 | 1.1:+6581561 | MS.gene33049:CDS |
GAGAAGACCGACCGGTGGTG+AGG | 0.592144 | 1.1:-6577570 | None:intergenic |
ATGGATTTCCGAGCGAGCAG+TGG | 0.601477 | 1.1:+6579631 | MS.gene33049:CDS |
TATTACCGGGATCACACTGC+TGG | 0.607631 | 1.1:-6577696 | None:intergenic |
GAGACTTTGTGTGGGGCATG+TGG | 0.613065 | 1.1:+6581470 | MS.gene33049:CDS |
AACACGGAGAGACTTTGTGT+GGG | 0.622939 | 1.1:+6581462 | MS.gene33049:CDS |
GGATGAAGATGGTGTAGGTG+TGG | 0.626967 | 1.1:+6581421 | MS.gene33049:CDS |
AGATGGTGTAGGTGTGGACG+AGG | 0.628142 | 1.1:+6581427 | MS.gene33049:CDS |
GAACACGGAGAGACTTTGTG+TGG | 0.630911 | 1.1:+6581461 | MS.gene33049:CDS |
GGAGGTGAATCTGCCAGCTG+AGG | 0.634327 | 1.1:+6579653 | MS.gene33049:CDS |
AGACTTCTTCGACAGTACGA+GGG | 0.643030 | 1.1:-6577507 | None:intergenic |
GATGAGGTTGAGGATGAAGA+TGG | 0.646194 | 1.1:+6581410 | MS.gene33049:CDS |
GAGGAAGATGAGGAAGAACA+CGG | 0.666720 | 1.1:+6581446 | MS.gene33049:CDS |
ATTTCCGAGCGAGCAGTGGG+AGG | 0.670558 | 1.1:+6579635 | MS.gene33049:CDS |
GTTGAGGATGAAGATGGTGT+AGG | 0.671969 | 1.1:+6581416 | MS.gene33049:CDS |
GTCTGGCAGGAAACAAGGAA+AGG | 0.676618 | 1.1:+6580781 | MS.gene33049:CDS |
ACACGGAGAGACTTTGTGTG+GGG | 0.707279 | 1.1:+6581463 | MS.gene33049:CDS |
AAAATGCGTGAAGATTACTC+CGG | 0.732353 | 1.1:+6581556 | MS.gene33049:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAGAAAATTATTTTATCATA+AGG | - | chr1.1:6578900-6578919 | None:intergenic | 10.0% |
!!! | TTTTCAATTAGTTTTAATTT+TGG | + | chr1.1:6579319-6579338 | MS.gene33049:intron | 10.0% |
!! | AAAATTGAAATGTTCATTTA+CGG | + | chr1.1:6579109-6579128 | MS.gene33049:intron | 15.0% |
!!! | AAAATTATTTTATCATAAGG+TGG | - | chr1.1:6578897-6578916 | None:intergenic | 15.0% |
!!! | AAATTATGTGATGTTTTATT+TGG | + | chr1.1:6580047-6580066 | MS.gene33049:intron | 15.0% |
!!! | AAATTATTTTATCATAAGGT+GGG | - | chr1.1:6578896-6578915 | None:intergenic | 15.0% |
!!! | AATTATGTGATGTTTTATTT+GGG | + | chr1.1:6580048-6580067 | MS.gene33049:intron | 15.0% |
!!! | ATTTATAATTTGTTGTATGA+TGG | + | chr1.1:6578805-6578824 | MS.gene33049:intron | 15.0% |
!!! | CAGTTAATTTTAATTTTTTC+AGG | + | chr1.1:6579363-6579382 | MS.gene33049:intron | 15.0% |
!!! | GACTTTTTTTATTTGAATTT+TGG | + | chr1.1:6579902-6579921 | MS.gene33049:intron | 15.0% |
!!! | TTGATTGTATTTTGTATTTT+TGG | + | chr1.1:6579557-6579576 | MS.gene33049:intron | 15.0% |
!!! | TTTTTTATTTGAATTTTGGT+TGG | + | chr1.1:6579906-6579925 | MS.gene33049:intron | 15.0% |
!! | AAGATAATCACTCTTATAAA+TGG | - | chr1.1:6580077-6580096 | None:intergenic | 20.0% |
!! | ACAGTGATAAAAAAAATCAA+AGG | + | chr1.1:6580285-6580304 | MS.gene33049:intron | 20.0% |
!! | ATCTGGAAAGAAAAAAAAAA+CGG | - | chr1.1:6577662-6577681 | None:intergenic | 20.0% |
!! | ATTTGCATATGAATTACATT+TGG | + | chr1.1:6578352-6578371 | MS.gene33049:intron | 20.0% |
!! | GTAAAAGAATCTATAATAGT+TGG | + | chr1.1:6578294-6578313 | MS.gene33049:intron | 20.0% |
!! | TTTAAACTTGAAGAATCTAA+TGG | - | chr1.1:6579000-6579019 | None:intergenic | 20.0% |
!! | TTTACGAAATAGAATATTAC+CGG | - | chr1.1:6577713-6577732 | None:intergenic | 20.0% |
!! | TTTAGTTAATCCTAATAGAA+AGG | + | chr1.1:6579060-6579079 | MS.gene33049:intron | 20.0% |
!!! | AATTATTTTATCATAAGGTG+GGG | - | chr1.1:6578895-6578914 | None:intergenic | 20.0% |
!!! | TGAAATTGAGTTACTTATTT+TGG | + | chr1.1:6579173-6579192 | MS.gene33049:intron | 20.0% |
!!! | TGTATGAAGATTTTAACTTA+GGG | + | chr1.1:6579223-6579242 | MS.gene33049:intron | 20.0% |
! | AAAAATCAAAGGAAAACTAG+TGG | + | chr1.1:6580296-6580315 | MS.gene33049:intron | 25.0% |
! | AAATCCAGTATCAATATTCA+AGG | - | chr1.1:6579259-6579278 | None:intergenic | 25.0% |
! | AATCAAAATGCTACCATTTA+TGG | + | chr1.1:6578150-6578169 | MS.gene33049:intron | 25.0% |
! | AATCCAGTATCAATATTCAA+GGG | - | chr1.1:6579258-6579277 | None:intergenic | 25.0% |
! | ATCAAAATGCTACCATTTAT+GGG | + | chr1.1:6578151-6578170 | MS.gene33049:intron | 25.0% |
! | ATTAATCACATGCAAAATTG+TGG | - | chr1.1:6577995-6578014 | None:intergenic | 25.0% |
! | CTAAAAGGAAAGAAACAATA+AGG | - | chr1.1:6580519-6580538 | None:intergenic | 25.0% |
! | CTAATAGAAAGGAATTATCT+AGG | + | chr1.1:6579071-6579090 | MS.gene33049:intron | 25.0% |
! | CTAGATAATTCCTTTCTATT+AGG | - | chr1.1:6579073-6579092 | None:intergenic | 25.0% |
! | CTTATATTCATCATTCAAGA+GGG | - | chr1.1:6579428-6579447 | None:intergenic | 25.0% |
! | GTACTATATTACACTTCATA+GGG | - | chr1.1:6578452-6578471 | None:intergenic | 25.0% |
! | GTATGGTATTTAATCAGTTA+AGG | + | chr1.1:6581292-6581311 | MS.gene33049:intron | 25.0% |
! | GTCATTTAATCTTGATTGAA+AGG | - | chr1.1:6580979-6580998 | None:intergenic | 25.0% |
! | GTGTCTATTATTTACATACA+TGG | + | chr1.1:6578050-6578069 | MS.gene33049:intron | 25.0% |
! | TGTAACTATAAGGGAAAATT+GGG | + | chr1.1:6578028-6578047 | MS.gene33049:intron | 25.0% |
! | TTACGAAATAGAATATTACC+GGG | - | chr1.1:6577712-6577731 | None:intergenic | 25.0% |
! | TTATATTCATCATTCAAGAG+GGG | - | chr1.1:6579427-6579446 | None:intergenic | 25.0% |
! | TTCAATCACATTCAAAATTG+TGG | - | chr1.1:6577968-6577987 | None:intergenic | 25.0% |
!! | AAGATACTCGTTTTACTAAA+AGG | - | chr1.1:6580534-6580553 | None:intergenic | 25.0% |
!! | AATTTTGCATGTGATTAATC+AGG | + | chr1.1:6577996-6578015 | MS.gene33049:intron | 25.0% |
!! | GAGAAATATAAAAGTTCTGA+AGG | - | chr1.1:6579491-6579510 | None:intergenic | 25.0% |
!! | TATCAACCAATCAAACATTT+TGG | - | chr1.1:6578249-6578268 | None:intergenic | 25.0% |
!!! | AAAATTTCTACTGTTTCTGT+TGG | + | chr1.1:6578191-6578210 | MS.gene33049:intron | 25.0% |
!!! | AATATAAAAGTTCTGAAGGT+TGG | - | chr1.1:6579487-6579506 | None:intergenic | 25.0% |
!!! | AATTGAGTTACTTATTTTGG+CGG | + | chr1.1:6579176-6579195 | MS.gene33049:intron | 25.0% |
!!! | AGCAAAACTTTATTTTGTTC+AGG | + | chr1.1:6578649-6578668 | MS.gene33049:intron | 25.0% |
!!! | CTGTATGAAGATTTTAACTT+AGG | + | chr1.1:6579222-6579241 | MS.gene33049:intron | 25.0% |
!!! | TGAAATTTTTGAGCAAATCA+AGG | - | chr1.1:6578771-6578790 | None:intergenic | 25.0% |
!!! | TTTTTTTTGCCATTCATTGA+TGG | + | chr1.1:6580629-6580648 | MS.gene33049:intron | 25.0% |
AACATAAGCAACAACAAGTA+CGG | - | chr1.1:6578867-6578886 | None:intergenic | 30.0% | |
AAGGAAAATCTTTGCCTTTA+TGG | + | chr1.1:6579612-6579631 | MS.gene33049:CDS | 30.0% | |
ACAATCAACAATTTCAACTG+TGG | - | chr1.1:6579545-6579564 | None:intergenic | 30.0% | |
ACTAAAATGCAAAGGATGAA+AGG | - | chr1.1:6580012-6580031 | None:intergenic | 30.0% | |
AGAAAAAACAGTTACAGAAG+TGG | + | chr1.1:6577808-6577827 | MS.gene33049:intron | 30.0% | |
ATATGTGAGAAATGGTTTCA+CGG | + | chr1.1:6581533-6581552 | MS.gene33049:CDS | 30.0% | |
ATGAAGTGTAATATAGTACG+CGG | + | chr1.1:6578453-6578472 | MS.gene33049:intron | 30.0% | |
CAAATCCAAATCAAACTCTA+AGG | + | chr1.1:6580835-6580854 | MS.gene33049:CDS | 30.0% | |
CGTACTATATTACACTTCAT+AGG | - | chr1.1:6578453-6578472 | None:intergenic | 30.0% | |
CTTACTTGAGTGTATGATAT+TGG | + | chr1.1:6580454-6580473 | MS.gene33049:intron | 30.0% | |
GATTAAATACCATACCAATC+AGG | - | chr1.1:6581287-6581306 | None:intergenic | 30.0% | |
GCATATGAATTACATTTGGT+GGG | + | chr1.1:6578356-6578375 | MS.gene33049:intron | 30.0% | |
GCTAAAGAGTTATAGCATAA+TGG | + | chr1.1:6580163-6580182 | MS.gene33049:intron | 30.0% | |
GCTTATATTCATCATTCAAG+AGG | - | chr1.1:6579429-6579448 | None:intergenic | 30.0% | |
GCTTGTACTATTGTTCATTT+AGG | + | chr1.1:6578083-6578102 | MS.gene33049:intron | 30.0% | |
GGTTTCCAAGAAAATAGATA+AGG | - | chr1.1:6579466-6579485 | None:intergenic | 30.0% | |
GTAACAACTTCAAAGATTGT+TGG | - | chr1.1:6580758-6580777 | None:intergenic | 30.0% | |
GTGTAACTATAAGGGAAAAT+TGG | + | chr1.1:6578027-6578046 | MS.gene33049:intron | 30.0% | |
TAAACATATATCCCTCTCTA+TGG | + | chr1.1:6581223-6581242 | MS.gene33049:intron | 30.0% | |
TAACCTTAATACATCGTACA+TGG | - | chr1.1:6578518-6578537 | None:intergenic | 30.0% | |
TAGTGAAAAACTAACAGTAC+TGG | - | chr1.1:6580100-6580119 | None:intergenic | 30.0% | |
TCAAACACGTGATAAAAACA+AGG | - | chr1.1:6577893-6577912 | None:intergenic | 30.0% | |
TCAATTCTAAGTCAAAGTTG+TGG | + | chr1.1:6577921-6577940 | MS.gene33049:intron | 30.0% | |
TGCATATGAATTACATTTGG+TGG | + | chr1.1:6578355-6578374 | MS.gene33049:intron | 30.0% | |
TGTTGCATGTGTAACTATAA+GGG | + | chr1.1:6578019-6578038 | MS.gene33049:intron | 30.0% | |
! | GATTATCGACTAAAATGCAA+AGG | - | chr1.1:6580020-6580039 | None:intergenic | 30.0% |
!! | ACAATCTTTGAAGTTGTTAC+AGG | + | chr1.1:6580758-6580777 | MS.gene33049:CDS | 30.0% |
!! | CAATCTTTGAAGTTGTTACA+GGG | + | chr1.1:6580759-6580778 | MS.gene33049:CDS | 30.0% |
!! | CTTAGAGTTTGATTTGGATT+TGG | - | chr1.1:6580837-6580856 | None:intergenic | 30.0% |
!! | CTTTCTGTGGCTTTTTATTT+CGG | + | chr1.1:6579786-6579805 | MS.gene33049:CDS | 30.0% |
!! | GCATTACTTTTGTCAAATAG+CGG | + | chr1.1:6580139-6580158 | MS.gene33049:intron | 30.0% |
!! | TAGTAGCTTGTCTGTTATTT+TGG | + | chr1.1:6579395-6579414 | MS.gene33049:intron | 30.0% |
!! | TATCTGCTATTTCACACATT+GGG | + | chr1.1:6580220-6580239 | MS.gene33049:intron | 30.0% |
!!! | ATTGAGTTACTTATTTTGGC+GGG | + | chr1.1:6579177-6579196 | MS.gene33049:intron | 30.0% |
AAAAAAAAGAGAAGACCGAC+CGG | - | chr1.1:6577581-6577600 | None:intergenic | 35.0% | |
AAAAGAGAAGAGGGCTATTT+AGG | + | chr1.1:6578602-6578621 | MS.gene33049:intron | 35.0% | |
AAAATGCGTGAAGATTACTC+CGG | + | chr1.1:6581556-6581575 | MS.gene33049:CDS | 35.0% | |
ACATAAGCAACAACAAGTAC+GGG | - | chr1.1:6578866-6578885 | None:intergenic | 35.0% | |
ACTTTCTTGCTCCAAAAACA+AGG | - | chr1.1:6581162-6581181 | None:intergenic | 35.0% | |
AGATAGGCTTCAATAGATAG+TGG | + | chr1.1:6579139-6579158 | MS.gene33049:intron | 35.0% | |
ATGGAATGCAAGAAAAGGAT+TGG | + | chr1.1:6579727-6579746 | MS.gene33049:CDS | 35.0% | |
ATTGAGATGCTTCCCATAAA+TGG | - | chr1.1:6578166-6578185 | None:intergenic | 35.0% | |
CATCCATGTACGATGTATTA+AGG | + | chr1.1:6578512-6578531 | MS.gene33049:intron | 35.0% | |
CTGTGGAACTTAAGCATATT+AGG | - | chr1.1:6579528-6579547 | None:intergenic | 35.0% | |
GAAAGCAAACCATCAATGAA+TGG | - | chr1.1:6580641-6580660 | None:intergenic | 35.0% | |
GAAGTCTTTCGAGATTTCAA+AGG | + | chr1.1:6577523-6577542 | MS.gene33049:CDS | 35.0% | |
GATCTGAATCTGATGTAGTA+TGG | + | chr1.1:6578716-6578735 | MS.gene33049:intron | 35.0% | |
GCTTACCTTAGAGTTTGATT+TGG | - | chr1.1:6580843-6580862 | None:intergenic | 35.0% | |
GGTATTAACTTTGCTAGAGA+TGG | + | chr1.1:6579708-6579727 | MS.gene33049:CDS | 35.0% | |
GGTTGAACCTAAATATGATG+CGG | - | chr1.1:6578845-6578864 | None:intergenic | 35.0% | |
GTGAGTCCAAAATGTTTGAT+TGG | + | chr1.1:6578240-6578259 | MS.gene33049:intron | 35.0% | |
GTGTTGCATGTGTAACTATA+AGG | + | chr1.1:6578018-6578037 | MS.gene33049:intron | 35.0% | |
TACATCCCAAAAAGAGAAGA+GGG | + | chr1.1:6578593-6578612 | MS.gene33049:intron | 35.0% | |
TAGAGATGGAATGCAAGAAA+AGG | + | chr1.1:6579722-6579741 | MS.gene33049:CDS | 35.0% | |
TCACCCTTGAATATTGATAC+TGG | + | chr1.1:6579252-6579271 | MS.gene33049:intron | 35.0% | |
TGATACTAAGAGGACTTTGA+GGG | + | chr1.1:6580894-6580913 | MS.gene33049:intron | 35.0% | |
TGTACTTATCATCTCTTTGC+AGG | + | chr1.1:6580702-6580721 | MS.gene33049:intron | 35.0% | |
TGTTCAGGAAGTTCATTTCT+TGG | + | chr1.1:6578664-6578683 | MS.gene33049:intron | 35.0% | |
TTAATGCCCAAAATACGTTG+CGG | + | chr1.1:6578484-6578503 | MS.gene33049:intron | 35.0% | |
TTACATCCCAAAAAGAGAAG+AGG | + | chr1.1:6578592-6578611 | MS.gene33049:intron | 35.0% | |
TTGATACTGGATTTAGTCTG+AGG | + | chr1.1:6579265-6579284 | MS.gene33049:intron | 35.0% | |
TTGCTCCAAAAACAAGGATT+CGG | - | chr1.1:6581156-6581175 | None:intergenic | 35.0% | |
! | AAATAGCCCTCTTCTCTTTT+TGG | - | chr1.1:6578602-6578621 | None:intergenic | 35.0% |
! | AATAGCCCTCTTCTCTTTTT+GGG | - | chr1.1:6578601-6578620 | None:intergenic | 35.0% |
! | GCCAAAGTTTTCAAAACCAA+TGG | + | chr1.1:6581361-6581380 | MS.gene33049:CDS | 35.0% |
! | GTTAAGGCTGTTATCTCTTT+TGG | + | chr1.1:6581308-6581327 | MS.gene33049:intron | 35.0% |
! | GTTTTCAAAACCAATGGCAA+TGG | + | chr1.1:6581367-6581386 | MS.gene33049:CDS | 35.0% |
! | TATTTTATCATAAGGTGGGG+TGG | - | chr1.1:6578892-6578911 | None:intergenic | 35.0% |
! | TGCTGCCTTATCTATTTTCT+TGG | + | chr1.1:6579458-6579477 | MS.gene33049:intron | 35.0% |
! | TTTCACACATTGGGGATTTT+CGG | + | chr1.1:6580229-6580248 | MS.gene33049:intron | 35.0% |
!! | AGAAAAGGATTGGCTATCTT+TGG | + | chr1.1:6579737-6579756 | MS.gene33049:CDS | 35.0% |
!! | ATCTGCTATTTCACACATTG+GGG | + | chr1.1:6580221-6580240 | MS.gene33049:intron | 35.0% |
!! | CTATCTGCTATTTCACACAT+TGG | + | chr1.1:6580219-6580238 | MS.gene33049:intron | 35.0% |
!! | GTCTGAGGTATCTATTTTCT+TGG | + | chr1.1:6579280-6579299 | MS.gene33049:intron | 35.0% |
!! | TCAATAGATAGTGGATGTGA+TGG | + | chr1.1:6579148-6579167 | MS.gene33049:intron | 35.0% |
!! | TTTATGGGAAGCATCTCAAT+TGG | + | chr1.1:6578166-6578185 | MS.gene33049:intron | 35.0% |
!!! | GCCATTGGTTTTGAAAACTT+TGG | - | chr1.1:6581365-6581384 | None:intergenic | 35.0% |
!!! | TTTTATTTCGGTGCTAGGTT+TGG | + | chr1.1:6579798-6579817 | MS.gene33049:CDS | 35.0% |
AAATGACTCACGCTATGACT+TGG | + | chr1.1:6580992-6581011 | MS.gene33049:intron | 40.0% | |
AACTGTGTCTGTTTCCTGAT+TGG | + | chr1.1:6581270-6581289 | MS.gene33049:intron | 40.0% | |
ATATGATGCGGCATAACCTT+TGG | - | chr1.1:6578833-6578852 | None:intergenic | 40.0% | |
CACTATTCGCTGATACTAAG+AGG | + | chr1.1:6580884-6580903 | MS.gene33049:intron | 40.0% | |
CATTTACGGCTTCAGAAGAT+AGG | + | chr1.1:6579123-6579142 | MS.gene33049:intron | 40.0% | |
CTCTTAGTATCAGCGAATAG+TGG | - | chr1.1:6580886-6580905 | None:intergenic | 40.0% | |
CTGATACTAAGAGGACTTTG+AGG | + | chr1.1:6580893-6580912 | MS.gene33049:intron | 40.0% | |
CTGATGTAGTATGGACTTCT+GGG | + | chr1.1:6578725-6578744 | MS.gene33049:intron | 40.0% | |
GAAAATAGATAAGGCAGCAC+AGG | - | chr1.1:6579457-6579476 | None:intergenic | 40.0% | |
GATTGAAAGGTGATCTCAGA+CGG | - | chr1.1:6580966-6580985 | None:intergenic | 40.0% | |
GCAAAGTTAATACCCAATGC+TGG | - | chr1.1:6579702-6579721 | None:intergenic | 40.0% | |
GGTTATGCCGCATCATATTT+AGG | + | chr1.1:6578835-6578854 | MS.gene33049:intron | 40.0% | |
TAACAGACAAGCTACTATCG+TGG | - | chr1.1:6579392-6579411 | None:intergenic | 40.0% | |
TATGATGCGGCATAACCTTT+GGG | - | chr1.1:6578832-6578851 | None:intergenic | 40.0% | |
TCAAAGGAAAACTAGTGGAG+AGG | + | chr1.1:6580301-6580320 | MS.gene33049:intron | 40.0% | |
TCTGATGTAGTATGGACTTC+TGG | + | chr1.1:6578724-6578743 | MS.gene33049:intron | 40.0% | |
TGCTAGGTTTGGATTTGACA+AGG | + | chr1.1:6579809-6579828 | MS.gene33049:CDS | 40.0% | |
TGGTAGAATACATCGACATC+TGG | - | chr1.1:6577679-6577698 | None:intergenic | 40.0% | |
TGTCTGTTTCCTGATTGGTA+TGG | + | chr1.1:6581275-6581294 | MS.gene33049:intron | 40.0% | |
TTAATTAAAGCCCTCACCAC+CGG | + | chr1.1:6577559-6577578 | MS.gene33049:CDS | 40.0% | |
TTGGATTTGACAAGGCTGAT+AGG | + | chr1.1:6579817-6579836 | MS.gene33049:CDS | 40.0% | |
TTTACCCTTTCACAAAGCTG+CGG | + | chr1.1:6579852-6579871 | MS.gene33049:intron | 40.0% | |
! | AAGCATATTAGGTGCTGCAT+TGG | - | chr1.1:6579517-6579536 | None:intergenic | 40.0% |
! | ACTGCCAACAAACTTTTGAG+AGG | - | chr1.1:6580596-6580615 | None:intergenic | 40.0% |
! | CAAGCTTTGTGATACAGAGA+AGG | + | chr1.1:6579593-6579612 | MS.gene33049:intron | 40.0% |
! | CTGGAAGTATGCAAGCATAT+CGG | - | chr1.1:6579025-6579044 | None:intergenic | 40.0% |
! | TAAGAGGACTTTGAGGGATT+TGG | + | chr1.1:6580900-6580919 | MS.gene33049:intron | 40.0% |
! | TTTGAAGTTGTTACAGGGTC+TGG | + | chr1.1:6580764-6580783 | MS.gene33049:CDS | 40.0% |
!! | CAACAAACTTTTGAGAGGCA+GGG | - | chr1.1:6580591-6580610 | None:intergenic | 40.0% |
!! | GATGGTTTGCTTTCTCAAGA+TGG | + | chr1.1:6580647-6580666 | MS.gene33049:intron | 40.0% |
!! | TTGTTGTATGATGGACCCAA+AGG | + | chr1.1:6578814-6578833 | MS.gene33049:intron | 40.0% |
!!! | AATTTTGGCTACGATGCTTC+AGG | + | chr1.1:6579334-6579353 | MS.gene33049:intron | 40.0% |
!!! | GAGATCCGAATCCTTGTTTT+TGG | + | chr1.1:6581148-6581167 | MS.gene33049:intron | 40.0% |
!!! | GATAGTGTTGCTGTTTTCAG+AGG | - | chr1.1:6580204-6580223 | None:intergenic | 40.0% |
!!! | GGTTTTGAAAACTTTGGCTG+AGG | - | chr1.1:6581359-6581378 | None:intergenic | 40.0% |
!!! | TGGCTTTTTATTTCGGTGCT+AGG | + | chr1.1:6579793-6579812 | MS.gene33049:CDS | 40.0% |
AAGACTTCTTCGACAGTACG+AGG | - | chr1.1:6577511-6577530 | None:intergenic | 45.0% | |
AAGGATTCACACATGTGCCA+CGG | - | chr1.1:6581120-6581139 | None:intergenic | 45.0% | |
AGACTTCTTCGACAGTACGA+GGG | - | chr1.1:6577510-6577529 | None:intergenic | 45.0% | |
ATCTGCATTGCCATTGCCAT+TGG | - | chr1.1:6581380-6581399 | None:intergenic | 45.0% | |
ATGTGTGAATCCTTTGCTGC+AGG | + | chr1.1:6581126-6581145 | MS.gene33049:intron | 45.0% | |
CCTGCCTCTCAAAAGTTTGT+TGG | + | chr1.1:6580589-6580608 | MS.gene33049:intron | 45.0% | |
GAGGAAGATGAGGAAGAACA+CGG | + | chr1.1:6581446-6581465 | MS.gene33049:CDS | 45.0% | |
GATGAGGTTGAGGATGAAGA+TGG | + | chr1.1:6581410-6581429 | MS.gene33049:CDS | 45.0% | |
GCTGCGACATATGTGAGAAA+TGG | + | chr1.1:6581525-6581544 | MS.gene33049:CDS | 45.0% | |
GTTGAGGATGAAGATGGTGT+AGG | + | chr1.1:6581416-6581435 | MS.gene33049:CDS | 45.0% | |
TAAATCTTATGCAGCAGCGC+TGG | - | chr1.1:6579044-6579063 | None:intergenic | 45.0% | |
TTGCAGTACACAGTGATGCT+TGG | + | chr1.1:6579760-6579779 | MS.gene33049:CDS | 45.0% | |
! | AAAGCCGCAGCTTTGTGAAA+GGG | - | chr1.1:6579859-6579878 | None:intergenic | 45.0% |
! | ACTTTCTAGCGCCATAGAGA+GGG | - | chr1.1:6581237-6581256 | None:intergenic | 45.0% |
! | GCAATGCCGCAACGTATTTT+GGG | - | chr1.1:6578493-6578512 | None:intergenic | 45.0% |
! | GCAGCTTTGTGAAAGGGTAA+AGG | - | chr1.1:6579853-6579872 | None:intergenic | 45.0% |
! | TAAAGCCGCAGCTTTGTGAA+AGG | - | chr1.1:6579860-6579879 | None:intergenic | 45.0% |
! | TAGTCTAGTTTGCATGACCG+TGG | + | chr1.1:6581100-6581119 | MS.gene33049:intron | 45.0% |
! | TGATGCTTGGTTGCTTTCTG+TGG | + | chr1.1:6579773-6579792 | MS.gene33049:CDS | 45.0% |
! | TGCAATGCCGCAACGTATTT+TGG | - | chr1.1:6578494-6578513 | None:intergenic | 45.0% |
!! | CCAACAAACTTTTGAGAGGC+AGG | - | chr1.1:6580592-6580611 | None:intergenic | 45.0% |
!! | TTAATACCCAATGCTGGCTC+TGG | - | chr1.1:6579696-6579715 | None:intergenic | 45.0% |
!!! | AATTTTTTTTACAAAAAAAT+AGG | - | chr1.1:6577623-6577642 | None:intergenic | 5.0% |
AAAAAGAGAAGACCGACCGG+TGG | - | chr1.1:6577578-6577597 | None:intergenic | 50.0% | |
AAGTTGTTACAGGGTCTGGC+AGG | + | chr1.1:6580768-6580787 | MS.gene33049:CDS | 50.0% | |
ACCATGGATATCCAGACTGC+AGG | - | chr1.1:6580930-6580949 | None:intergenic | 50.0% | |
ATTCGGATCTCCTGCAGCAA+AGG | - | chr1.1:6581139-6581158 | None:intergenic | 50.0% | |
CCATGGATATCCAGACTGCA+GGG | - | chr1.1:6580929-6580948 | None:intergenic | 50.0% | |
CGTGAAGATTACTCCGGCAA+GGG | + | chr1.1:6581562-6581581 | MS.gene33049:CDS | 50.0% | |
GATTTGGATTCCCTGCAGTC+TGG | + | chr1.1:6580916-6580935 | MS.gene33049:intron | 50.0% | |
GCAGATGCAGTCAAAGGATG+AGG | + | chr1.1:6581394-6581413 | MS.gene33049:CDS | 50.0% | |
GCAGTCAAAGGATGAGGTTG+AGG | + | chr1.1:6581400-6581419 | MS.gene33049:CDS | 50.0% | |
GCGGCTTTACTCTGCTCAAT+AGG | + | chr1.1:6579871-6579890 | MS.gene33049:intron | 50.0% | |
GCTCGCTCGGAAATCCATAA+AGG | - | chr1.1:6579629-6579648 | None:intergenic | 50.0% | |
GGATGAAGATGGTGTAGGTG+TGG | + | chr1.1:6581421-6581440 | MS.gene33049:CDS | 50.0% | |
GGCAATGCAGATGCAGTCAA+AGG | + | chr1.1:6581388-6581407 | MS.gene33049:CDS | 50.0% | |
GGTGGGTCATAACAAGAAGC+TGG | + | chr1.1:6578373-6578392 | MS.gene33049:intron | 50.0% | |
GTCTGGCAGGAAACAAGGAA+AGG | + | chr1.1:6580781-6580800 | MS.gene33049:CDS | 50.0% | |
TATTACCGGGATCACACTGC+TGG | - | chr1.1:6577699-6577718 | None:intergenic | 50.0% | |
TCGACAGTACGAGGGTTGTA+CGG | - | chr1.1:6577502-6577521 | None:intergenic | 50.0% | |
TGCTGTTGCTGCGTTTGTCA+TGG | + | chr1.1:6578919-6578938 | MS.gene33049:intron | 50.0% | |
TTCTACCAGCAGTGTGATCC+CGG | + | chr1.1:6577691-6577710 | MS.gene33049:CDS | 50.0% | |
TTGATATGCTCAGCCCTTGC+CGG | - | chr1.1:6581578-6581597 | None:intergenic | 50.0% | |
! | AGAAAGTGTGTCGTCTCGTC+TGG | + | chr1.1:6581039-6581058 | MS.gene33049:intron | 50.0% |
! | ATTGGGGATTTTCGGCGTTC+TGG | + | chr1.1:6580237-6580256 | MS.gene33049:intron | 50.0% |
! | GACTTTCTAGCGCCATAGAG+AGG | - | chr1.1:6581238-6581257 | None:intergenic | 50.0% |
ACAAGAGAGCTCGCCCTTGA+TGG | + | chr1.1:6581624-6581643 | MS.gene33049:CDS | 55.0% | |
ACAGGGTCTGGCAGGAAACA+AGG | + | chr1.1:6580776-6580795 | MS.gene33049:CDS | 55.0% | |
AGATGGTGTAGGTGTGGACG+AGG | + | chr1.1:6581427-6581446 | MS.gene33049:CDS | 55.0% | |
AGGTGTGGACGAGGAAGATG+AGG | + | chr1.1:6581436-6581455 | MS.gene33049:CDS | 55.0% | |
ATGGATTTCCGAGCGAGCAG+TGG | + | chr1.1:6579631-6579650 | MS.gene33049:CDS | 55.0% | |
CCCTGCAGTCTGGATATCCA+TGG | + | chr1.1:6580926-6580945 | MS.gene33049:intron | 55.0% | |
CGGTGCAGATTGCTTGACCA+TGG | - | chr1.1:6580946-6580965 | None:intergenic | 55.0% | |
GAGCTTCCAGAGCCAGCATT+GGG | + | chr1.1:6579687-6579706 | MS.gene33049:CDS | 55.0% | |
GCGTGAAGATTACTCCGGCA+AGG | + | chr1.1:6581561-6581580 | MS.gene33049:CDS | 55.0% | |
GCTATGCAGCTGACGAGTTC+TGG | + | chr1.1:6581498-6581517 | MS.gene33049:CDS | 55.0% | |
GCTCTCTTGTTGCTGCAAGC+TGG | - | chr1.1:6581614-6581633 | None:intergenic | 55.0% | |
GTCGTAGACACGTGTGCAGT+TGG | + | chr1.1:6580332-6580351 | MS.gene33049:intron | 55.0% | |
TGAGCTTCCAGAGCCAGCAT+TGG | + | chr1.1:6579686-6579705 | MS.gene33049:CDS | 55.0% | |
TGGATTTCCGAGCGAGCAGT+GGG | + | chr1.1:6579632-6579651 | MS.gene33049:CDS | 55.0% | |
TTAAAGCCCTCACCACCGGT+CGG | + | chr1.1:6577563-6577582 | MS.gene33049:intron | 55.0% | |
!! | AATGCTGGCTCTGGAAGCTC+AGG | - | chr1.1:6579687-6579706 | None:intergenic | 55.0% |
AGAAGACCGACCGGTGGTGA+GGG | - | chr1.1:6577572-6577591 | None:intergenic | 60.0% | |
ATTTCCGAGCGAGCAGTGGG+AGG | + | chr1.1:6579635-6579654 | MS.gene33049:CDS | 60.0% | |
GGAGGTGAATCTGCCAGCTG+AGG | + | chr1.1:6579653-6579672 | MS.gene33049:CDS | 60.0% | |
TTCACCTCCCACTGCTCGCT+CGG | - | chr1.1:6579642-6579661 | None:intergenic | 60.0% | |
GAGAAGACCGACCGGTGGTG+AGG | - | chr1.1:6577573-6577592 | None:intergenic | 65.0% | |
TCAGGCGGCACTTCCTCAGC+TGG | - | chr1.1:6579669-6579688 | None:intergenic | 65.0% | |
!! | GCTGGCTCTGGAAGCTCAGG+CGG | - | chr1.1:6579684-6579703 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 6577481 | 6581643 | 6577481 | ID=MS.gene33049 |
chr1.1 | mRNA | 6577481 | 6581643 | 6577481 | ID=MS.gene33049.t1;Parent=MS.gene33049 |
chr1.1 | exon | 6577481 | 6577580 | 6577481 | ID=MS.gene33049.t1.exon1;Parent=MS.gene33049.t1 |
chr1.1 | CDS | 6577481 | 6577580 | 6577481 | ID=cds.MS.gene33049.t1;Parent=MS.gene33049.t1 |
chr1.1 | exon | 6577680 | 6577712 | 6577680 | ID=MS.gene33049.t1.exon2;Parent=MS.gene33049.t1 |
chr1.1 | CDS | 6577680 | 6577712 | 6577680 | ID=cds.MS.gene33049.t1;Parent=MS.gene33049.t1 |
chr1.1 | exon | 6579610 | 6579838 | 6579610 | ID=MS.gene33049.t1.exon3;Parent=MS.gene33049.t1 |
chr1.1 | CDS | 6579610 | 6579838 | 6579610 | ID=cds.MS.gene33049.t1;Parent=MS.gene33049.t1 |
chr1.1 | exon | 6580724 | 6580856 | 6580724 | ID=MS.gene33049.t1.exon4;Parent=MS.gene33049.t1 |
chr1.1 | CDS | 6580724 | 6580856 | 6580724 | ID=cds.MS.gene33049.t1;Parent=MS.gene33049.t1 |
chr1.1 | exon | 6581344 | 6581643 | 6581344 | ID=MS.gene33049.t1.exon5;Parent=MS.gene33049.t1 |
chr1.1 | CDS | 6581344 | 6581643 | 6581344 | ID=cds.MS.gene33049.t1;Parent=MS.gene33049.t1 |
Gene Sequence |
Protein sequence |