AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene058475

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058475.t1 MTR_1g013760 96.842 285 8 1 1 284 1 285 0.0 570
MS.gene058475.t1 MTR_3g106060 59.322 295 91 9 1 275 1 286 7.54e-103 302
MS.gene058475.t1 MTR_2g105060 46.816 267 116 7 24 275 58 313 3.04e-67 212
MS.gene058475.t1 MTR_2g105060 45.565 248 109 7 43 275 2 238 8.22e-60 190
MS.gene058475.t1 MTR_4g007060 41.606 274 127 6 25 275 17 280 1.03e-52 174
MS.gene058475.t1 MTR_4g007060 41.667 288 132 8 11 275 40 314 1.31e-52 174
MS.gene058475.t1 MTR_1g013790 39.113 248 120 7 46 276 5 238 4.14e-42 145
MS.gene058475.t1 MTR_7g110720 28.783 337 166 8 6 274 71 401 1.09e-30 119
MS.gene058475.t1 MTR_7g110720 28.743 334 143 8 6 274 71 374 7.85e-30 116
MS.gene058475.t1 MTR_4g007060 42.857 175 82 4 11 179 40 202 3.13e-29 111
MS.gene058475.t1 MTR_2g023930 32.864 213 99 4 28 196 150 362 1.82e-27 111
MS.gene058475.t1 MTR_4g132430 30.455 220 104 5 25 205 118 327 1.44e-25 105
MS.gene058475.t1 MTR_3g053330 32.524 206 81 5 124 271 236 441 2.40e-24 102
MS.gene058475.t1 MTR_4g107970 57.333 75 32 0 122 196 161 235 4.28e-24 101
MS.gene058475.t1 MTR_4g094412 52.564 78 37 0 119 196 214 291 5.35e-24 101
MS.gene058475.t1 MTR_4g107970 57.333 75 32 0 122 196 238 312 5.49e-24 101
MS.gene058475.t1 MTR_4g094412 52.564 78 37 0 119 196 223 300 5.83e-24 101
MS.gene058475.t1 MTR_2g088000 45.631 103 54 1 113 213 321 423 1.60e-23 100
MS.gene058475.t1 MTR_7g009730 53.333 75 35 0 122 196 202 276 2.42e-23 99.8
MS.gene058475.t1 MTR_4g132430 50.000 82 41 0 124 205 112 193 1.28e-22 96.3
MS.gene058475.t1 MTR_2g045360 40.517 116 56 3 91 196 156 268 1.64e-22 96.7
MS.gene058475.t1 MTR_4g049760 52.055 73 35 0 124 196 275 347 1.73e-20 91.3
MS.gene058475.t1 MTR_3g056100 39.286 112 59 4 91 196 219 327 1.11e-19 88.6
MS.gene058475.t1 MTR_3g056100 39.286 112 59 4 91 196 206 314 1.24e-19 88.6
MS.gene058475.t1 MTR_4g049790 44.565 92 51 0 124 215 297 388 1.26e-19 89.0
MS.gene058475.t1 MTR_3g056100 39.286 112 59 4 91 196 363 471 1.32e-19 89.0
MS.gene058475.t1 MTR_3g056100 39.286 112 59 4 91 196 350 458 1.37e-19 89.0
MS.gene058475.t1 MTR_5g094430 57.895 57 23 1 140 196 231 286 1.50e-19 88.2
MS.gene058475.t1 MTR_5g094430 57.895 57 23 1 140 196 253 308 1.51e-19 88.2
MS.gene058475.t1 MTR_5g094430 57.895 57 23 1 140 196 365 420 1.71e-19 88.6
MS.gene058475.t1 MTR_1g086790 41.667 96 51 2 123 218 146 236 2.20e-19 86.7
MS.gene058475.t1 MTR_5g097490 52.703 74 32 2 124 197 239 309 3.28e-19 87.0
MS.gene058475.t1 MTR_5g091390 47.297 74 34 2 123 196 145 213 4.87e-19 85.5
MS.gene058475.t1 MTR_7g109800 44.828 87 45 2 110 196 118 201 5.06e-19 85.1
MS.gene058475.t1 MTR_4g094588 57.895 57 23 1 140 196 179 234 5.79e-19 85.9
MS.gene058475.t1 MTR_5g016610 52.632 57 27 0 140 196 200 256 7.95e-19 84.3
MS.gene058475.t1 MTR_1g009613 36.538 104 55 1 93 196 227 319 1.63e-18 84.3
MS.gene058475.t1 MTR_5g043880 42.308 104 48 4 99 196 83 180 1.66e-18 83.6
MS.gene058475.t1 MTR_4g094908 49.231 65 33 0 140 204 267 331 1.96e-18 84.3
MS.gene058475.t1 MTR_3g104750 46.053 76 38 2 121 196 88 160 2.27e-18 80.5
MS.gene058475.t1 MTR_1g070455 47.945 73 36 1 127 197 279 351 2.53e-18 84.0
MS.gene058475.t1 MTR_7g100510 50.746 67 32 1 130 196 352 417 3.81e-18 84.3
MS.gene058475.t1 MTR_7g100510 52.000 75 27 4 140 207 190 262 5.66e-16 77.8
MS.gene058475.t1 MTR_5g074400 47.945 73 35 2 124 196 407 476 4.42e-18 84.3
MS.gene058475.t1 MTR_5g074400 50.877 57 26 2 140 196 244 298 1.25e-13 71.2
MS.gene058475.t1 MTR_2g033820 47.297 74 34 2 123 196 191 259 4.81e-18 83.6
MS.gene058475.t1 MTR_5g042920 47.945 73 35 2 124 196 307 376 5.84e-18 83.6
MS.gene058475.t1 MTR_5g042920 52.632 57 25 2 140 196 152 206 1.36e-13 70.9
MS.gene058475.t1 MTR_4g082580 47.945 73 35 2 124 196 265 334 1.51e-17 82.0
MS.gene058475.t1 MTR_4g082580 47.368 57 29 1 140 196 146 201 9.13e-11 62.0
MS.gene058475.t1 MTR_7g011820 47.945 73 35 2 124 196 397 466 2.40e-17 82.0
MS.gene058475.t1 MTR_7g011820 49.123 57 27 2 140 196 229 283 2.31e-11 64.3
MS.gene058475.t1 MTR_7g062220 49.333 75 37 1 140 214 125 198 2.85e-17 80.5
MS.gene058475.t1 MTR_3g031220 46.575 73 36 2 124 196 352 421 5.36e-17 80.9
MS.gene058475.t1 MTR_3g031220 50.877 57 26 2 140 196 199 253 3.26e-13 69.7
MS.gene058475.t1 MTR_8g087000 51.724 58 28 0 140 197 78 135 7.89e-17 78.2
MS.gene058475.t1 MTR_8g087000 51.724 58 28 0 140 197 77 134 9.21e-17 78.2
MS.gene058475.t1 MTR_1g015140 50.877 57 27 1 140 196 103 158 1.35e-16 75.9
MS.gene058475.t1 MTR_0117s0040 52.632 57 27 0 140 196 75 131 1.52e-16 77.4
MS.gene058475.t1 MTR_3g108960 52.632 57 27 0 140 196 315 371 2.65e-16 78.6
MS.gene058475.t1 MTR_7g079010 54.098 61 27 1 140 200 142 201 3.13e-16 76.3
MS.gene058475.t1 MTR_3g009470 34.921 126 70 4 124 240 482 604 3.18e-16 79.0
MS.gene058475.t1 MTR_3g009470 50.877 57 26 2 140 196 281 335 6.73e-12 65.9
MS.gene058475.t1 MTR_4g127040 50.000 58 29 0 140 197 246 303 3.29e-16 77.8
MS.gene058475.t1 MTR_7g028415 52.459 61 28 1 140 200 94 153 3.46e-16 75.1
MS.gene058475.t1 MTR_7g028710 52.459 61 28 1 140 200 94 153 3.46e-16 75.1
MS.gene058475.t1 MTR_8g092140 52.632 57 26 1 140 196 161 216 3.49e-16 76.3
MS.gene058475.t1 MTR_2g016770 49.123 57 29 0 140 196 36 92 3.78e-16 75.9
MS.gene058475.t1 MTR_3g095080 52.632 57 26 1 140 196 145 200 3.81e-16 75.9
MS.gene058475.t1 MTR_3g095080 52.632 57 26 1 140 196 169 224 4.65e-16 76.3
MS.gene058475.t1 MTR_2g016770 49.123 57 29 0 140 196 28 84 4.85e-16 75.5
MS.gene058475.t1 MTR_7g080000 44.737 76 39 2 121 196 416 488 5.99e-16 78.2
MS.gene058475.t1 MTR_7g071120 45.205 73 37 2 124 196 311 380 7.03e-16 77.8
MS.gene058475.t1 MTR_7g071120 47.368 57 28 2 140 196 167 221 4.81e-11 63.2
MS.gene058475.t1 MTR_4g122530 45.205 73 37 2 124 196 195 264 1.09e-15 77.0
MS.gene058475.t1 MTR_4g013260 40.217 92 49 3 105 196 307 392 1.17e-15 77.0
MS.gene058475.t1 MTR_4g013260 47.368 57 29 1 140 196 185 240 7.50e-13 68.6
MS.gene058475.t1 MTR_8g007270 52.632 57 26 1 140 196 155 210 1.76e-15 74.3
MS.gene058475.t1 MTR_1g077780 41.026 78 43 2 119 196 44 118 1.82e-15 72.4
MS.gene058475.t1 MTR_2g024350 33.607 122 74 3 140 254 9 130 2.35e-15 73.9
MS.gene058475.t1 MTR_2g083870 52.632 57 27 0 140 196 81 137 2.83e-15 74.3
MS.gene058475.t1 MTR_7g080020 33.333 147 83 6 124 262 480 619 4.54e-15 75.5
MS.gene058475.t1 MTR_8g096730 45.161 62 33 1 140 201 71 131 6.60e-15 70.9
MS.gene058475.t1 MTR_4g130900 50.877 57 27 1 140 196 360 415 9.18e-15 74.3
MS.gene058475.t1 MTR_2g032030 42.857 77 39 1 125 196 248 324 1.64e-14 73.6
MS.gene058475.t1 MTR_2g032030 42.857 77 39 1 125 196 248 324 1.65e-14 73.6
MS.gene058475.t1 MTR_6g086555 40.909 88 46 4 111 197 182 264 1.79e-14 73.2
MS.gene058475.t1 MTR_8g098945 49.123 57 29 0 140 196 130 186 2.72e-14 71.6
MS.gene058475.t1 MTR_2g024380 32.773 119 73 3 140 251 252 370 3.56e-14 72.8
MS.gene058475.t1 MTR_3g095040 49.123 57 28 1 140 196 119 174 3.67e-14 70.1
MS.gene058475.t1 MTR_8g028565 45.614 57 31 0 140 196 156 212 6.68e-14 71.2
MS.gene058475.t1 MTR_7g109600 47.368 57 30 0 140 196 54 110 1.05e-13 69.7
MS.gene058475.t1 MTR_8g092010 31.343 134 77 4 66 196 43 164 1.13e-13 68.2
MS.gene058475.t1 MTR_4g047580 35.870 92 59 0 124 215 266 357 1.48e-13 70.9
MS.gene058475.t1 MTR_7g079040 47.368 57 30 0 140 196 155 211 1.69e-13 70.1
MS.gene058475.t1 MTR_3g031220 50.877 57 26 2 140 196 199 253 2.38e-13 69.7
MS.gene058475.t1 MTR_1g078260 38.636 88 48 4 111 197 223 305 5.88e-13 68.9
MS.gene058475.t1 MTR_1g099600 36.842 76 48 0 140 215 186 261 6.82e-13 68.2
MS.gene058475.t1 MTR_8g099350 50.877 57 26 1 140 194 133 189 5.49e-12 65.9
MS.gene058475.t1 MTR_3g009470 50.877 57 26 2 140 196 281 335 7.81e-12 65.9
MS.gene058475.t1 MTR_5g097500 46.479 71 36 2 126 196 218 286 8.61e-12 64.7
MS.gene058475.t1 MTR_5g067680 49.123 57 27 1 140 194 203 259 8.71e-12 65.1
MS.gene058475.t1 MTR_3g090860 50.877 57 26 1 140 194 134 190 9.42e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058475.t1 AT1G80840 42.667 300 133 9 3 274 6 294 4.38e-69 216
MS.gene058475.t1 AT4G31800 44.030 268 128 8 25 278 49 308 7.61e-61 195
MS.gene058475.t1 AT2G25000 41.697 271 110 8 19 278 36 269 1.51e-59 191
MS.gene058475.t1 AT2G25000 41.825 263 108 7 24 278 1 226 2.10e-59 189
MS.gene058475.t1 AT2G25000 41.825 263 108 7 24 278 1 226 2.10e-59 189
MS.gene058475.t1 AT2G25000 40.959 271 115 7 16 278 15 248 7.27e-59 188
MS.gene058475.t1 AT4G31800 55.294 170 66 4 111 278 82 243 2.99e-54 176
MS.gene058475.t1 AT4G31800 42.353 170 75 4 25 176 49 213 2.61e-33 122
MS.gene058475.t1 AT4G04450 48.913 92 47 0 124 215 183 274 1.56e-24 102
MS.gene058475.t1 AT4G04450 48.913 92 47 0 124 215 277 368 3.46e-24 102
MS.gene058475.t1 AT4G01720 32.995 197 99 4 28 196 105 296 9.64e-24 100
MS.gene058475.t1 AT1G68150 48.387 93 48 0 118 210 214 306 2.42e-23 98.6
MS.gene058475.t1 AT4G22070 54.795 73 33 0 124 196 282 354 3.35e-23 99.4
MS.gene058475.t1 AT4G22070 54.795 73 33 0 124 196 282 354 3.35e-23 99.4
MS.gene058475.t1 AT4G22070 54.795 73 33 0 124 196 282 354 3.35e-23 99.4
MS.gene058475.t1 AT4G22070 54.795 73 33 0 124 196 282 354 3.35e-23 99.4
MS.gene058475.t1 AT1G62300 54.795 73 33 0 124 196 297 369 5.01e-23 99.0
MS.gene058475.t1 AT5G15130 52.703 74 35 0 140 213 186 259 3.17e-22 96.3
MS.gene058475.t1 AT5G15130 52.703 74 35 0 140 213 228 301 4.27e-22 96.3
MS.gene058475.t1 AT1G18860 64.912 57 20 0 140 196 240 296 1.43e-21 94.7
MS.gene058475.t1 AT1G64000 57.377 61 25 1 140 200 115 174 2.48e-19 84.0
MS.gene058475.t1 AT1G29860 53.333 60 27 1 137 196 134 192 6.48e-19 84.7
MS.gene058475.t1 AT4G18170 53.333 60 27 1 137 196 170 228 6.84e-19 85.1
MS.gene058475.t1 AT2G04880 57.627 59 24 1 138 196 282 339 1.02e-18 85.9
MS.gene058475.t1 AT2G04880 57.627 59 24 1 138 196 306 363 1.15e-18 85.9
MS.gene058475.t1 AT5G41570 57.377 61 25 1 140 200 99 158 1.30e-18 81.6
MS.gene058475.t1 AT5G26170 50.877 57 27 1 140 196 114 169 1.48e-18 81.3
MS.gene058475.t1 AT2G47260 55.000 60 26 1 137 196 172 230 1.72e-18 84.3
MS.gene058475.t1 AT4G26640 56.140 57 24 1 140 196 206 261 2.15e-18 84.7
MS.gene058475.t1 AT4G26640 56.140 57 24 1 140 196 206 261 2.15e-18 84.7
MS.gene058475.t1 AT4G26640 56.140 57 24 1 140 196 206 261 2.15e-18 84.7
MS.gene058475.t1 AT4G26640 56.140 57 24 1 140 196 206 261 2.15e-18 84.7
MS.gene058475.t1 AT1G13960 47.945 73 35 2 124 196 243 312 3.03e-18 84.0
MS.gene058475.t1 AT1G13960 50.877 57 26 2 140 196 77 131 1.44e-12 67.4
MS.gene058475.t1 AT4G26640 56.140 57 24 1 140 196 310 365 3.31e-18 84.7
MS.gene058475.t1 AT4G26640 56.140 57 24 1 140 196 342 397 3.37e-18 84.7
MS.gene058475.t1 AT4G26640 56.140 57 24 1 140 196 382 437 3.60e-18 84.7
MS.gene058475.t1 AT5G49520 47.222 72 34 2 140 208 222 292 4.21e-18 84.0
MS.gene058475.t1 AT2G03340 47.945 73 35 2 124 196 402 471 5.06e-18 84.0
MS.gene058475.t1 AT2G03340 50.877 57 26 2 140 196 251 305 2.58e-13 70.1
MS.gene058475.t1 AT1G13960 47.945 73 35 2 124 196 396 465 5.07e-18 84.0
MS.gene058475.t1 AT1G13960 50.877 57 26 2 140 196 230 284 1.60e-12 67.8
MS.gene058475.t1 AT5G46350 47.222 72 33 2 125 196 173 239 6.05e-18 82.8
MS.gene058475.t1 AT5G07100 45.205 73 37 2 124 196 128 197 1.61e-17 79.7
MS.gene058475.t1 AT5G07100 45.070 71 38 1 126 196 11 80 2.03e-13 68.2
MS.gene058475.t1 AT5G07100 45.205 73 37 2 124 196 128 197 1.61e-17 79.7
MS.gene058475.t1 AT5G07100 45.070 71 38 1 126 196 11 80 2.03e-13 68.2
MS.gene058475.t1 AT5G07100 45.205 73 37 2 124 196 128 197 1.61e-17 79.7
MS.gene058475.t1 AT5G07100 45.070 71 38 1 126 196 11 80 2.03e-13 68.2
MS.gene058475.t1 AT5G07100 45.205 73 37 2 124 196 128 197 1.61e-17 79.7
MS.gene058475.t1 AT5G07100 45.070 71 38 1 126 196 11 80 2.03e-13 68.2
MS.gene058475.t1 AT4G31550 50.877 57 28 0 140 196 247 303 1.80e-17 81.3
MS.gene058475.t1 AT2G30590 52.632 57 27 0 140 196 314 370 1.80e-17 82.0
MS.gene058475.t1 AT4G31550 50.877 57 28 0 140 196 246 302 1.89e-17 81.3
MS.gene058475.t1 AT1G69810 50.000 74 36 1 124 196 130 203 2.16e-17 81.3
MS.gene058475.t1 AT1G69310 54.386 57 25 1 140 196 148 203 2.25e-17 80.5
MS.gene058475.t1 AT1G69310 54.386 57 25 1 140 196 148 203 2.25e-17 80.5
MS.gene058475.t1 AT1G69310 54.386 57 25 1 140 196 148 203 2.25e-17 80.5
MS.gene058475.t1 AT5G28650 47.222 72 36 1 127 196 248 319 2.58e-17 80.9
MS.gene058475.t1 AT2G23320 49.123 57 29 0 140 196 241 297 2.68e-17 80.9
MS.gene058475.t1 AT1G69810 50.000 74 36 1 124 196 188 261 2.74e-17 81.6
MS.gene058475.t1 AT5G56270 47.945 73 35 2 124 196 474 543 3.78e-17 81.6
MS.gene058475.t1 AT5G56270 27.461 193 121 6 9 196 150 328 9.13e-12 65.9
MS.gene058475.t1 AT3G62340 51.562 64 30 1 133 196 112 174 4.20e-17 79.7
MS.gene058475.t1 AT5G13080 53.226 62 28 1 140 201 68 128 4.28e-17 76.6
MS.gene058475.t1 AT5G07100 45.205 73 37 2 124 196 221 290 4.36e-17 80.1
MS.gene058475.t1 AT5G07100 45.070 71 38 1 126 196 104 173 6.01e-13 68.2
MS.gene058475.t1 AT3G01080 46.575 73 36 2 124 196 293 362 6.41e-17 80.5
MS.gene058475.t1 AT3G01080 49.123 57 27 2 140 196 168 222 7.12e-11 62.8
MS.gene058475.t1 AT3G01080 46.575 73 36 2 124 196 331 400 7.72e-17 80.5
MS.gene058475.t1 AT3G01080 49.123 57 27 2 140 196 206 260 7.29e-11 62.8
MS.gene058475.t1 AT1G29280 50.877 57 28 0 140 196 75 131 1.03e-16 78.2
MS.gene058475.t1 AT3G04670 44.444 72 38 1 127 196 248 319 1.38e-16 79.0
MS.gene058475.t1 AT2G24570 50.877 57 28 0 140 196 244 300 1.44e-16 79.0
MS.gene058475.t1 AT2G38470 52.632 57 26 1 140 196 363 418 2.31e-16 79.3
MS.gene058475.t1 AT2G38470 50.877 57 26 2 140 196 185 239 2.90e-13 70.1
MS.gene058475.t1 AT4G24240 46.552 58 31 0 140 197 282 339 3.99e-16 77.8
MS.gene058475.t1 AT4G30935 52.632 57 26 1 140 196 332 387 6.42e-16 77.8
MS.gene058475.t1 AT2G44745 52.632 57 26 1 140 196 146 201 8.88e-16 75.1
MS.gene058475.t1 AT2G30250 45.205 73 37 2 124 196 315 384 1.63e-15 76.3
MS.gene058475.t1 AT2G30250 46.479 71 34 3 140 210 167 233 1.70e-11 64.3
MS.gene058475.t1 AT3G01970 49.180 61 30 1 140 200 66 125 2.63e-15 72.0
MS.gene058475.t1 AT1G55600 50.000 62 30 1 140 201 308 368 3.14e-15 75.9
MS.gene058475.t1 AT2G37260 45.588 68 36 1 129 196 259 325 4.00e-15 75.1
MS.gene058475.t1 AT2G37260 46.479 71 36 2 126 196 72 140 5.23e-15 74.7
MS.gene058475.t1 AT2G37260 45.588 68 36 1 129 196 257 323 4.07e-15 74.7
MS.gene058475.t1 AT2G37260 46.479 71 36 2 126 196 70 138 5.37e-15 74.7
MS.gene058475.t1 AT2G37260 45.588 68 36 1 129 196 339 405 4.49e-15 75.1
MS.gene058475.t1 AT2G37260 46.479 71 36 2 126 196 152 220 5.79e-15 74.7
MS.gene058475.t1 AT4G39410 50.877 57 27 1 140 196 224 279 5.17e-15 74.3
MS.gene058475.t1 AT2G21900 44.444 72 38 2 126 196 95 165 6.60e-15 72.0
MS.gene058475.t1 AT2G34830 47.692 65 34 0 132 196 217 281 8.50e-15 74.3
MS.gene058475.t1 AT2G34830 47.692 65 34 0 132 196 208 272 8.54e-15 74.3
MS.gene058475.t1 AT1G30650 47.692 65 34 0 132 196 210 274 1.70e-14 73.6
MS.gene058475.t1 AT3G58710 49.123 57 29 0 140 196 72 128 2.87e-14 71.6
MS.gene058475.t1 AT3G58710 49.123 57 29 0 140 196 71 127 3.07e-14 71.6
MS.gene058475.t1 AT5G64810 37.349 83 47 3 115 196 88 166 5.89e-14 69.3
MS.gene058475.t1 AT2G46130 50.877 57 27 1 140 196 31 86 6.78e-14 67.0
MS.gene058475.t1 AT4G01250 45.614 57 31 0 140 196 129 185 1.04e-13 70.5
MS.gene058475.t1 AT5G43290 40.789 76 43 2 121 196 97 170 1.12e-13 70.1
MS.gene058475.t1 AT5G52830 43.478 69 39 0 140 208 166 234 1.58e-13 70.1
MS.gene058475.t1 AT4G26440 43.836 73 38 2 124 196 359 428 1.75e-13 70.9
MS.gene058475.t1 AT4G26440 47.368 57 28 2 140 196 179 233 7.05e-11 62.8
MS.gene058475.t1 AT5G45050 34.951 103 64 1 94 196 1110 1209 1.85e-13 70.9
MS.gene058475.t1 AT5G45050 34.951 103 64 1 94 196 1138 1237 2.02e-13 70.9
MS.gene058475.t1 AT5G45050 34.951 103 64 1 94 196 999 1098 2.11e-13 70.9
MS.gene058475.t1 AT1G69310 50.877 57 23 2 140 196 148 199 6.29e-13 67.8
MS.gene058475.t1 AT4G23550 31.159 138 86 4 140 275 141 271 1.05e-12 67.4
MS.gene058475.t1 AT2G46400 40.698 86 46 3 111 194 79 161 1.89e-12 66.6
MS.gene058475.t1 AT3G01080 49.123 57 27 2 140 196 206 260 6.74e-11 62.4

Find 46 sgRNAs with CRISPR-Local

Find 98 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTATTTCTGGAAGAATTT+TGG 0.107436 1.4:+7639253 MS.gene058475:CDS
GCACTTGCCACTGCTATTTC+TGG 0.167473 1.4:+7639242 MS.gene058475:CDS
AATTGCTGGATAGATGATTT+TGG 0.173303 1.4:-7639167 None:intergenic
TTTGGACCATACTTCTAATA+AGG 0.232805 1.4:+7639271 MS.gene058475:CDS
TTCCTCACCTAAGGCTTATA+AGG 0.237117 1.4:+7638110 MS.gene058475:CDS
TCTTTCTTGATTGTTGTGTT+TGG 0.315541 1.4:-7637960 None:intergenic
GCAAGTGCTGTAGTGAAATT+AGG 0.319456 1.4:-7639227 None:intergenic
CAAAGTGAAGAAGCTCCTTT+AGG 0.328438 1.4:+7639074 MS.gene058475:CDS
GGATATCAATGGAGGAAATA+TGG 0.328462 1.4:+7638345 MS.gene058475:CDS
AATATGTTTGATACTGTTAG+AGG 0.330331 1.4:+7638009 MS.gene058475:CDS
TTATGTGCAGGACGAAGTTT+TGG 0.348061 1.4:+7637813 MS.gene058475:intron
TGGAACATTATCAAGCTTCA+TGG 0.367214 1.4:-7639147 None:intergenic
CCTCTCCTAGAGCTTACTTT+AGG 0.371319 1.4:+7638391 MS.gene058475:CDS
ACTTGGCCTTATTAGAAGTA+TGG 0.388347 1.4:-7639277 None:intergenic
TATGTTGCAACTAGTATAGT+AGG 0.404321 1.4:-7638996 None:intergenic
ATGAAGAATCATTAATCAAA+AGG 0.454669 1.4:+7638073 MS.gene058475:CDS
CTAAAGGAGCTTCTTCACTT+TGG 0.478227 1.4:-7639073 None:intergenic
TACATGGAAATTTCACCACT+TGG 0.480676 1.4:-7639294 None:intergenic
ATGGAGGAAATATGGTCAAA+AGG 0.485930 1.4:+7638353 MS.gene058475:CDS
ACAAGAACCTTATAAGCCTT+AGG 0.486641 1.4:-7638117 None:intergenic
TACGGATATTTCCTCACCTA+AGG 0.493009 1.4:+7638101 MS.gene058475:CDS
ATACTAGTTGCAACATATGA+AGG 0.494693 1.4:+7639002 MS.gene058475:CDS
AACTGGGCAGCTTGGAGCAT+AGG 0.506437 1.4:-7638418 None:intergenic
ACATTATCAAGCTTCATGGT+TGG 0.511345 1.4:-7639143 None:intergenic
TAGTGCTTCTTCTATACTCA+AGG 0.512134 1.4:+7637225 MS.gene058475:CDS
GAGCACCTAAAGTAAGCTCT+AGG 0.538868 1.4:-7638396 None:intergenic
ATTAATCAAAAGGCCATGTA+CGG 0.546737 1.4:+7638083 MS.gene058475:CDS
CCTAAAGTAAGCTCTAGGAG+AGG 0.548395 1.4:-7638391 None:intergenic
CTCATAGTTCTCACACATGT+TGG 0.554828 1.4:-7637890 None:intergenic
CTAAAGTAAGCTCTAGGAGA+GGG 0.569732 1.4:-7638390 None:intergenic
GTAACATGCACTGAACCTAA+AGG 0.571811 1.4:-7639089 None:intergenic
GTCTCAGTTCTGAGAACAAG+AGG 0.575865 1.4:+7637851 MS.gene058475:CDS
TTTCAGCTTTCTCATGACCA+TGG 0.582497 1.4:-7639034 None:intergenic
AACAATGGAATCAACATGCG+TGG 0.589289 1.4:+7637180 None:intergenic
GGTATAAAGTATGTGATGGA+TGG 0.592987 1.4:+7638324 MS.gene058475:intron
ATGTGATGGATGGATATCAA+TGG 0.593080 1.4:+7638334 MS.gene058475:CDS
TTGTGGTATAAAGTATGTGA+TGG 0.595565 1.4:+7638320 MS.gene058475:intron
ATGTTGCAACTAGTATAGTA+GGG 0.601976 1.4:-7638995 None:intergenic
GGTGAGGAAATATCCGTACA+TGG 0.629436 1.4:-7638096 None:intergenic
GTTCTTTGAATAATTTGTTG+AGG 0.631715 1.4:-7639116 None:intergenic
AACCTTATAAGCCTTAGGTG+AGG 0.658225 1.4:-7638112 None:intergenic
TAAAGTAAGCTCTAGGAGAG+GGG 0.664013 1.4:-7638389 None:intergenic
TGATGGATGGATATCAATGG+AGG 0.669535 1.4:+7638337 MS.gene058475:CDS
AATTCTTCCAGAAATAGCAG+TGG 0.680346 1.4:-7639249 None:intergenic
TATGAAGGAGAGCACAACCA+TGG 0.694590 1.4:+7639017 MS.gene058475:CDS
ATACTTCTAATAAGGCCAAG+TGG 0.705619 1.4:+7639279 MS.gene058475:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAATATACAATACTTA+GGG - chr1.4:7637624-7637643 None:intergenic 10.0%
!! TATATTAATTTCACTAAAAA+TGG + chr1.4:7637633-7637652 MS.gene058475:intron 10.0%
!! ATCTTTATATGAAAAAAATG+TGG - chr1.4:7638604-7638623 None:intergenic 15.0%
!! GAAATTAATATACAATACTT+AGG - chr1.4:7637625-7637644 None:intergenic 15.0%
!! TAATTCAATAATGTTGAAAT+TGG + chr1.4:7637656-7637675 MS.gene058475:intron 15.0%
!! TACAAATTCAAAATTAATCA+AGG - chr1.4:7638299-7638318 None:intergenic 15.0%
!!! ATCAAAATTTGATTTTGTTT+GGG - chr1.4:7638933-7638952 None:intergenic 15.0%
!!! TAATTTTGAATTTGTATTTG+TGG + chr1.4:7638303-7638322 MS.gene058475:intron 15.0%
!! AATACTTAGGGATATAATAA+AGG - chr1.4:7637612-7637631 None:intergenic 20.0%
!! AGAAACAAAAGTAAAAATAG+AGG + chr1.4:7638803-7638822 MS.gene058475:intron 20.0%
!! ATACTTAGGGATATAATAAA+GGG - chr1.4:7637611-7637630 None:intergenic 20.0%
!! ATGAAGAATCATTAATCAAA+AGG + chr1.4:7638073-7638092 MS.gene058475:CDS 20.0%
!! CTCTTATGTCATTATTAATT+AGG + chr1.4:7638953-7638972 MS.gene058475:intron 20.0%
!! GTAATAGTTCAAAATTCTAT+TGG + chr1.4:7638450-7638469 MS.gene058475:intron 20.0%
!! TAATAAAGGGTAGAAAAAAA+TGG - chr1.4:7637598-7637617 None:intergenic 20.0%
!! TTATATGAAAAAAATGTGGT+TGG - chr1.4:7638600-7638619 None:intergenic 20.0%
!!! ATTTTAAGAATACACATGTT+TGG - chr1.4:7638497-7638516 None:intergenic 20.0%
!!! GATCAAAATTTGATTTTGTT+TGG - chr1.4:7638934-7638953 None:intergenic 20.0%
! AATATGTTTGATACTGTTAG+AGG + chr1.4:7638009-7638028 MS.gene058475:CDS 25.0%
! AATCTTGTTAAAAACGCATT+AGG - chr1.4:7637574-7637593 None:intergenic 25.0%
! ATTCTGTCTCATCAATATAT+TGG - chr1.4:7638674-7638693 None:intergenic 25.0%
! CAGTTAATGAAGTAAAATTG+TGG + chr1.4:7638253-7638272 MS.gene058475:intron 25.0%
! CTAAAAATAAGGCGTATATT+AGG + chr1.4:7637407-7637426 MS.gene058475:intron 25.0%
! GGCGTTTATTAGTAAAAATA+AGG + chr1.4:7637440-7637459 MS.gene058475:intron 25.0%
! TTTCGATAGAGATTACTAAT+CGG - chr1.4:7638544-7638563 None:intergenic 25.0%
!! AACGTCATTCTAAGAAATTT+AGG - chr1.4:7637786-7637805 None:intergenic 25.0%
!! AAGCGTTTTTAACAATTTGA+TGG + chr1.4:7637342-7637361 MS.gene058475:intron 25.0%
!! AATTTGACAAGAACTTTTAG+TGG + chr1.4:7638564-7638583 MS.gene058475:intron 25.0%
!! ACGTCATTCTAAGAAATTTA+GGG - chr1.4:7637785-7637804 None:intergenic 25.0%
!! ACTATTACCTTCTTTTTAAC+TGG - chr1.4:7638438-7638457 None:intergenic 25.0%
!! ATTGATGAGACAGAATTTTA+GGG + chr1.4:7638678-7638697 MS.gene058475:intron 25.0%
!! ATTTGACAAGAACTTTTAGT+GGG + chr1.4:7638565-7638584 MS.gene058475:intron 25.0%
!! TATTGATGAGACAGAATTTT+AGG + chr1.4:7638677-7638696 MS.gene058475:intron 25.0%
!! TTTTACTAATAAACGCCATT+AGG - chr1.4:7637437-7637456 None:intergenic 25.0%
!!! CTAATATACGCCTTATTTTT+AGG - chr1.4:7637409-7637428 None:intergenic 25.0%
!!! CTATTACCTTCTTTTTAACT+GGG - chr1.4:7638437-7638456 None:intergenic 25.0%
!!! GTTCTTTGAATAATTTGTTG+AGG - chr1.4:7639119-7639138 None:intergenic 25.0%
AAATAAGGCGTATATTAGGT+TGG + chr1.4:7637411-7637430 MS.gene058475:intron 30.0%
ATACTAGTTGCAACATATGA+AGG + chr1.4:7639002-7639021 MS.gene058475:CDS 30.0%
ATGTTGCAACTAGTATAGTA+GGG - chr1.4:7638998-7639017 None:intergenic 30.0%
ATTAATCAAAAGGCCATGTA+CGG + chr1.4:7638083-7638102 MS.gene058475:CDS 30.0%
TATGTTGCAACTAGTATAGT+AGG - chr1.4:7638999-7639018 None:intergenic 30.0%
TCTTTCTTGATTGTTGTGTT+TGG - chr1.4:7637963-7637982 None:intergenic 30.0%
TTGTGGTATAAAGTATGTGA+TGG + chr1.4:7638320-7638339 MS.gene058475:intron 30.0%
TTTGGACCATACTTCTAATA+AGG + chr1.4:7639271-7639290 MS.gene058475:CDS 30.0%
TTTGTTGAACCAAAAATTGC+TGG - chr1.4:7639184-7639203 None:intergenic 30.0%
! AATTGCTGGATAGATGATTT+TGG - chr1.4:7639170-7639189 None:intergenic 30.0%
! ACGTTGAAAATTTTATGTGC+AGG + chr1.4:7637801-7637820 MS.gene058475:intron 30.0%
! ATCATCTATCCAGCAATTTT+TGG + chr1.4:7639172-7639191 MS.gene058475:CDS 30.0%
!!! GCAATTTTTGGTTCAACAAA+TGG + chr1.4:7639184-7639203 MS.gene058475:CDS 30.0%
!!! TGCTATTTCTGGAAGAATTT+TGG + chr1.4:7639253-7639272 MS.gene058475:CDS 30.0%
AATTCTTCCAGAAATAGCAG+TGG - chr1.4:7639252-7639271 None:intergenic 35.0%
ACAAGAACCTTATAAGCCTT+AGG - chr1.4:7638120-7638139 None:intergenic 35.0%
ACATTATCAAGCTTCATGGT+TGG - chr1.4:7639146-7639165 None:intergenic 35.0%
ATACTTCTAATAAGGCCAAG+TGG + chr1.4:7639279-7639298 MS.gene058475:CDS 35.0%
ATGGAGGAAATATGGTCAAA+AGG + chr1.4:7638353-7638372 MS.gene058475:CDS 35.0%
GGATATCAATGGAGGAAATA+TGG + chr1.4:7638345-7638364 MS.gene058475:CDS 35.0%
TAGCTTGGGACCTAAAAATA+AGG + chr1.4:7637396-7637415 MS.gene058475:intron 35.0%
TAGTGCTTCTTCTATACTCA+AGG + chr1.4:7637225-7637244 MS.gene058475:CDS 35.0%
TGGAACATTATCAAGCTTCA+TGG - chr1.4:7639150-7639169 None:intergenic 35.0%
TTACTAATCGGTGAAGTATG+TGG - chr1.4:7638532-7638551 None:intergenic 35.0%
! CATCAATATATTGGTCTGAG+TGG - chr1.4:7638665-7638684 None:intergenic 35.0%
! GGTATAAAGTATGTGATGGA+TGG + chr1.4:7638324-7638343 MS.gene058475:intron 35.0%
! TTGATGGTAATAACCCACTT+AGG + chr1.4:7637358-7637377 MS.gene058475:intron 35.0%
!! ACTTGGCCTTATTAGAAGTA+TGG - chr1.4:7639280-7639299 None:intergenic 35.0%
!! ATGTGATGGATGGATATCAA+TGG + chr1.4:7638334-7638353 MS.gene058475:CDS 35.0%
AACCTTATAAGCCTTAGGTG+AGG - chr1.4:7638115-7638134 None:intergenic 40.0%
AAGCTGCCCAGTTAAAAAGA+AGG + chr1.4:7638428-7638447 MS.gene058475:CDS 40.0%
CAAAGTGAAGAAGCTCCTTT+AGG + chr1.4:7639074-7639093 MS.gene058475:CDS 40.0%
CTAAAGGAGCTTCTTCACTT+TGG - chr1.4:7639076-7639095 None:intergenic 40.0%
CTCATAGTTCTCACACATGT+TGG - chr1.4:7637893-7637912 None:intergenic 40.0%
GTAACATGCACTGAACCTAA+AGG - chr1.4:7639092-7639111 None:intergenic 40.0%
TACGGATATTTCCTCACCTA+AGG + chr1.4:7638101-7638120 MS.gene058475:CDS 40.0%
TGGTAATAACCCACTTAGGT+TGG + chr1.4:7637362-7637381 MS.gene058475:intron 40.0%
TTCCTCACCTAAGGCTTATA+AGG + chr1.4:7638110-7638129 MS.gene058475:CDS 40.0%
TTGGCCTAATGGTATTAGCT+TGG + chr1.4:7637381-7637400 MS.gene058475:intron 40.0%
TTTCAGCTTTCTCATGACCA+TGG - chr1.4:7639037-7639056 None:intergenic 40.0%
! GCAAGTGCTGTAGTGAAATT+AGG - chr1.4:7639230-7639249 None:intergenic 40.0%
! TGATGGATGGATATCAATGG+AGG + chr1.4:7638337-7638356 MS.gene058475:CDS 40.0%
! TGGCCTAATGGTATTAGCTT+GGG + chr1.4:7637382-7637401 MS.gene058475:intron 40.0%
! TTATGTGCAGGACGAAGTTT+TGG + chr1.4:7637813-7637832 MS.gene058475:intron 40.0%
!! CGTATATTAGGTTGGCCTAA+TGG + chr1.4:7637419-7637438 MS.gene058475:intron 40.0%
!! CTAAAGTAAGCTCTAGGAGA+GGG - chr1.4:7638393-7638412 None:intergenic 40.0%
!! TAAAGTAAGCTCTAGGAGAG+GGG - chr1.4:7638392-7638411 None:intergenic 40.0%
!! TTCTTTTTAACTGGGCAGCT+TGG - chr1.4:7638429-7638448 None:intergenic 40.0%
ACCATTAGGCCAACCTAAGT+GGG - chr1.4:7637374-7637393 None:intergenic 45.0%
AGGCCCAAGCTAATACCATT+AGG - chr1.4:7637554-7637573 None:intergenic 45.0%
CCTCTCCTAGAGCTTACTTT+AGG + chr1.4:7638391-7638410 MS.gene058475:CDS 45.0%
GAGCACCTAAAGTAAGCTCT+AGG - chr1.4:7638399-7638418 None:intergenic 45.0%
GGTCCCAAGCTAATACCATT+AGG - chr1.4:7637388-7637407 None:intergenic 45.0%
GGTGAGGAAATATCCGTACA+TGG - chr1.4:7638099-7638118 None:intergenic 45.0%
TACCATTAGGCCAACCTAAG+TGG - chr1.4:7637375-7637394 None:intergenic 45.0%
! TATGAAGGAGAGCACAACCA+TGG + chr1.4:7639017-7639036 MS.gene058475:CDS 45.0%
!! CCTAAAGTAAGCTCTAGGAG+AGG - chr1.4:7638394-7638413 None:intergenic 45.0%
!! GTCTCAGTTCTGAGAACAAG+AGG + chr1.4:7637851-7637870 MS.gene058475:CDS 45.0%
!! ACCCACTTAGGTTGGCCTAA+TGG + chr1.4:7637370-7637389 MS.gene058475:intron 50.0%
!! GCACTTGCCACTGCTATTTC+TGG + chr1.4:7639242-7639261 MS.gene058475:CDS 50.0%
AACTGGGCAGCTTGGAGCAT+AGG - chr1.4:7638421-7638440 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 7637184 7639304 7637184 ID=MS.gene058475
chr1.4 mRNA 7637184 7639304 7637184 ID=MS.gene058475.t1;Parent=MS.gene058475
chr1.4 exon 7637184 7637246 7637184 ID=MS.gene058475.t1.exon1;Parent=MS.gene058475.t1
chr1.4 CDS 7637184 7637246 7637184 ID=cds.MS.gene058475.t1;Parent=MS.gene058475.t1
chr1.4 exon 7637823 7638167 7637823 ID=MS.gene058475.t1.exon2;Parent=MS.gene058475.t1
chr1.4 CDS 7637823 7638167 7637823 ID=cds.MS.gene058475.t1;Parent=MS.gene058475.t1
chr1.4 exon 7638333 7638449 7638333 ID=MS.gene058475.t1.exon3;Parent=MS.gene058475.t1
chr1.4 CDS 7638333 7638449 7638333 ID=cds.MS.gene058475.t1;Parent=MS.gene058475.t1
chr1.4 exon 7638975 7639304 7638975 ID=MS.gene058475.t1.exon4;Parent=MS.gene058475.t1
chr1.4 CDS 7638975 7639304 7638975 ID=cds.MS.gene058475.t1;Parent=MS.gene058475.t1
Gene Sequence

>MS.gene058475

ATGGAATCAACATGCGTGGATACTTCACTCAATCTTAACGTTAGTGCTTCTTCTATACTCAAGGTTCGTATACATATACAGTTAAAGAGTTAAATTTTCATATTTTTAAACATCAAAATCAATCACGCGTGACTTTAAAAATAGTTATCATAAAAGTCAAGCGTTTTTAACAATTTGATGGTAATAACCCACTTAGGTTGGCCTAATGGTATTAGCTTGGGACCTAAAAATAAGGCGTATATTAGGTTGGCCTAATGGCGTTTATTAGTAAAAATAAGGCGTTTATTAGTAAAAATAACTTTAAAAATAGTTATCATAAAAGTCAAGCGTTTTTAACAATTTGATGGTAATAACCCACTTAGGTTGGCCTAATGGTATTAGCTTGGGCCTAATGCGTTTTTAACAAGATTACCATTTTTTTCTACCCTTTATTATATCCCTAAGTATTGTATATTAATTTCACTAAAAATGGTAATTCAATAATGTTGAAATTGGATACTAATTTCATTCTAATTATTTTTATTTTTGTTGATAATTTAACTGTTTTTACTAGTAGTATTTGCATATATATGTAATAAATTTTAGTTATTTCATGTGTCCCTAAATTTCTTAGAATGACGTTGAAAATTTTATGTGCAGGACGAAGTTTTGGTTGAAGAGTTACATCGTCTCAGTTCTGAGAACAAGAGGCTAAATGAAACATTGACCAACATGTGTGAGAACTATGAGACTATGCAAAAGCAATTGAATCAATTGATGAATCAAAATTTTGAACACCAAACACAACAATCAAGAAAGAGAAAAGCTGAGAGTGAAAGTTGCATCAATATGTTTGATACTGTTAGAGGCATTAATATTATCAATAATAATGAGTGCAGCACTGTTACTGATGAAGAATCATTAATCAAAAGGCCATGTACGGATATTTCCTCACCTAAGGCTTATAAGGTTCTTGTGAAGACAGAAGCATCTAGTAATAGCTTAGTAAGTTAATTTCTTTATTATTTTGATGTATAAATTTAATTTTTCTAGCAACTTCAATAGTGCGTGTTTAGTTGTGTCTATATTACAGTTAATGAAGTAAAATTGTGGAGCTTAATCACAAGTACTAACCTTGATTAATTTTGAATTTGTATTTGTGGTATAAAGTATGTGATGGATGGATATCAATGGAGGAAATATGGTCAAAAGGTTACTAGAGACAACCCCTCTCCTAGAGCTTACTTTAGGTGCTCCTATGCTCCAAGCTGCCCAGTTAAAAAGAAGGTAATAGTTCAAAATTCTATTGGCAAACAATATTTTTGTCTACACCAAACATGTGTATTCTTAAAATGATGTGAAGTGTCCACATACTTCACCGATTAGTAATCTCTATCGAAAAATTTGACAAGAACTTTTAGTGGGTTTTTCTTACCAACCACATTTTTTTCATATAAAGATTCGAATATGAGACTTTTTTAAGAGATTTAAGTTCAGTTCCACTCAGACCAATATATTGATGAGACAGAATTTTAGGGTTTCTTCTAAGTTTTAAAATCATCTTATTTATCACTTTATTTTTTCTTTTCAAAGATTTGTACAAGAAAAAAATGAAAGTAATGTACAAGTATTTAAAAATAAGAAACAAAAGTAAAAATAGAGGACAATTTTACAATCAAAGTGAAAACAAGAAATAAAATAGAAAACATTTTCTTAAAGTAAACAAATGCTAAAATTTTGTCATTCATGATTTTGATTCAAGAATCACCCAAACAAAATCAAATTTTGATCTCTTATGTCATTATTAATTAGGTGCAAAAAAGTGTAGAAGACCCTACTATACTAGTTGCAACATATGAAGGAGAGCACAACCATGGTCATGAGAAAGCTGAAATATCAATGATATCAAGCCAAAGTGAAGAAGCTCCTTTAGGTTCAGTGCATGTTACTTCACCTCAACAAATTATTCAAAGAACATGTCCAACCATGAAGCTTGATAATGTTCCAAAATCATCTATCCAGCAATTTTTGGTTCAACAAATGGCTACTTCTTTGACAAATGATCCTAATTTCACTACAGCACTTGCCACTGCTATTTCTGGAAGAATTTTGGACCATACTTCTAATAAGGCCAAGTGGTGA
Protein sequence

>MS.gene058475.t1

MESTCVDTSLNLNVSASSILKDEVLVEELHRLSSENKRLNETLTNMCENYETMQKQLNQLMNQNFEHQTQQSRKRKAESESCINMFDTVRGINIINNNECSTVTDEESLIKRPCTDISSPKAYKVLVKTEASSNSLYVMDGYQWRKYGQKVTRDNPSPRAYFRCSYAPSCPVKKKVQKSVEDPTILVATYEGEHNHGHEKAEISMISSQSEEAPLGSVHVTSPQQIIQRTCPTMKLDNVPKSSIQQFLVQQMATSLTNDPNFTTALATAISGRILDHTSNKAKW