AlfalfaGEDB | MS.gene058519

M. sativa cultivar XinJiangDaYe / MS.gene058519

KEGG: K20600
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004707 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058519.t1	XP_003624049.1	98.8	343	4	0	1	343	1	343	6.20E-198	699.9

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058519.t1	Q40353	87.5	343	42	1	1	343	1	342	1.6e-181	636.7

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058519.t1	G7L6L0	98.8	343	4	0	1	343	1	343	4.5e-198	699.9

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene058518	MS.gene058519	0.932418	8.78E-95	-1.69E-46
MS.gene058519	MS.gene51857	0.891503	3.74E-74	-1.69E-46
MS.gene058519	MS.gene85441	0.884355	2.06E-71	-1.69E-46

Showing 1 to 3 of 3 entries

Previous1Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene034184	MS.gene058519	PPI
MS.gene042336	MS.gene058519	PPI
MS.gene058519	MS.gene041902	PPI
MS.gene058519	MS.gene92070	PPI
MS.gene058519	MS.gene064692	PPI
MS.gene058519	MS.gene053173	PPI
MS.gene058519	MS.gene08564	PPI
MS.gene058519	MS.gene94570	PPI
MS.gene058519	MS.gene42314	PPI
MS.gene058519	MS.gene005341	PPI

Showing 1 to 10 of 25 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058519.t1	MTR_7g078690	98.547	344	5	0	1	344	1	344	0.0	708
MS.gene058519.t1	MTR_8g028720	86.919	344	44	1	1	344	1	343	0.0	645
MS.gene058519.t1	MTR_8g098845	82.335	334	59	0	11	344	25	358	0.0	596
MS.gene058519.t1	MTR_5g010030	78.674	347	71	1	1	344	1	347	0.0	582
MS.gene058519.t1	MTR_4g061320	75.073	341	85	0	5	345	7	347	0.0	557
MS.gene058519.t1	MTR_4g087620	71.513	337	95	1	10	346	27	362	0.0	534
MS.gene058519.t1	MTR_4g061130	64.387	351	109	2	13	362	14	349	2.11e-171	481
MS.gene058519.t1	MTR_3g112210	59.763	338	132	3	13	349	10	344	1.77e-149	426
MS.gene058519.t1	MTR_4g087620	77.551	245	55	0	10	254	27	271	6.19e-149	421
MS.gene058519.t1	MTR_8g086000	60.568	317	119	3	24	339	19	330	1.28e-139	401

Showing 1 to 10 of 502 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene058519.t1	AT4G01370	88.270	341	40	0	4	344	9	349	644
MS.gene058519.t1	AT1G01560	86.186	333	46	0	12	344	14	346	605
MS.gene058519.t1	AT4G11330	77.616	344	77	0	9	352	14	357	583
MS.gene058519.t1	AT2G46070	81.250	336	63	0	11	346	48	383	583
MS.gene058519.t1	AT2G46070	81.250	336	63	0	11	346	14	349	582
MS.gene058519.t1	AT1G01560	86.129	310	41	1	12	319	14	323	559
MS.gene058519.t1	AT1G07880	75.602	332	81	0	13	344	8	339	548
MS.gene058519.t1	AT2G46070	83.224	304	51	0	11	314	14	317	537
MS.gene058519.t1	AT2G43790	70.145	345	101	2	10	353	35	378	518
MS.gene058519.t1	AT3G45640	65.418	347	120	0	1	347	1	347	515

Showing 1 to 10 of 500 entries

Previous1 2 3 4 5…50Next

Find 0 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ACAACAGAATTGATGCTAAA+AGG	-	50226:4203-4222	MS.gene058519:intron	30.0%
ACAACTGATACAGAAAATAC+TGG	+	50226:4959-4978	MS.gene058519:intergenic	30.0%
ATAATCTCTCACAAATGCTT+AGG	-	50226:3440-3459	MS.gene058519:CDS	30.0%
ATAATCTTTCCCAGGAAATA+GGG	+	50226:5246-5265	MS.gene058519:intergenic	30.0%
ATCTAGTAGATTTAGACTTG+TGG	-	50226:3778-3797	MS.gene058519:CDS	30.0%
ATCTGATCACAACAATATTC+AGG	-	50226:2174-2193	MS.gene058519:CDS	30.0%
ATGCCTAAATAGCTAAGAAA+GGG	+	50226:2963-2982	MS.gene058519:intergenic	30.0%
ATTCGGTATAACTATTGTCT+CGG	+	50226:2538-2557	MS.gene058519:intergenic	30.0%
CAAAAGCTATCATTTCCATT+TGG	+	50226:4785-4804	MS.gene058519:intergenic	30.0%
CAAATCAAAATTGAAAGGTC+TGG	+	50226:5761-5780	MS.gene058519:intergenic	30.0%

Showing 1 to 10 of 232 entries

Previous1 2 3 4 5…24Next

Chromosome	Type	Strat	End	Strand	Name
50226	gene	2160	5837	2160	ID=MS.gene058519
50226	mRNA	2160	5837	2160	ID=MS.gene058519.t1;Parent=MS.gene058519
50226	exon	5680	5837	5680	ID=MS.gene058519.t1.exon1;Parent=MS.gene058519.t1
50226	CDS	5680	5837	5680	ID=cds.MS.gene058519.t1;Parent=MS.gene058519.t1
50226	exon	3727	3856	3727	ID=MS.gene058519.t1.exon2;Parent=MS.gene058519.t1
50226	CDS	3727	3856	3727	ID=cds.MS.gene058519.t1;Parent=MS.gene058519.t1
50226	exon	3329	3466	3329	ID=MS.gene058519.t1.exon3;Parent=MS.gene058519.t1
50226	CDS	3329	3466	3329	ID=cds.MS.gene058519.t1;Parent=MS.gene058519.t1
50226	exon	2705	3037	2705	ID=MS.gene058519.t1.exon4;Parent=MS.gene058519.t1
50226	CDS	2705	3037	2705	ID=cds.MS.gene058519.t1;Parent=MS.gene058519.t1
50226	exon	2397	2580	2397	ID=MS.gene058519.t1.exon5;Parent=MS.gene058519.t1
50226	CDS	2397	2580	2397	ID=cds.MS.gene058519.t1;Parent=MS.gene058519.t1
50226	exon	2160	2305	2160	ID=MS.gene058519.t1.exon6;Parent=MS.gene058519.t1
50226	CDS	2160	2305	2160	ID=cds.MS.gene058519.t1;Parent=MS.gene058519.t1

Gene Sequence

>MS.gene058519

ATGTCTCTTGCTTCATCTGATCACAACAATATTCAGGGAGTTCTTACTCATGGTGGACGCTATGTTCAGTATAATATCTACGGTAATTTATTTGAAGTGTCTAACAAGTATGTCCCTCCTATTCGTCCTATTGGAAGAGGAGCTTATGGTATTGTCTGGTAAGGAAATACTATTCCCATATTTATGGGCTTCATTTATTTTTTTTCTTGCTTGATTGATTTGATTTTGTGTTGTGTGTGGGGGGTAAACTATGAAGCACAGACACTCCTCGTATTAGACATTAGACATGTCCAGTGATGGATACACATGACACATCTATGAATTACGGATACACCTCAAATTAGACGTGTTTCGGTGTCAGACACGTGTCGTGTCCCGAGACAATAGTTATACCGAATTATGTGATTTTATTCAATTCATAGTTGAGCGGTGTCGGTAGTGTGTGGTGTCTGTGTTCGTATCCATGTTTCATAGACACACGTCGATGTCCGACACTGATACGACTTTGACATATATGATCACACTGAGTTACGTCATTTTCTCAAATTATTATTGATATCGACTGTGTCAGTGTCGTGTCCGCGTCCGCCCTTAATAGGGGATGAAGTGTTGCCCTTTTTTAGTTATTTAGGCCATGTTTGGATAAACAACTTATTTAAAGTGTCTAACAAGTATGTCCCTCCTATTCGTCCTGTTGGAAGAGGAGCTTATGGTATTTTCTCGTAAGGAAAAATAAATTATGGGGTTGATTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTGTGGGAGTAAAGGGTTTCCCTTTCTTAGCTATTTAGGCATGTTTGGATAAACAACTTAATTAAGTGGTTATGTATAAGTTATTTCTGTAACAAAACAAAATAAAGTCAAAATGTTTATATAAGCCATAAGTTGCGGCTCTGAGCATGTTTAGAGTGTGCAATTGCAGCAAAAGCTCCATATTTTCAGGGGCACCAAGTTGTTGGGAACTTTGGCTTCTTAAGACTCAAATATATCTAAATATAAGTGTGTGCGCAAGGGCGCGTGCATATCTGACTTAAAAAAAATAGGTTTAGACTCAAATATTTCTAAATACGGGTGTGTGCGAGCGCACATGTCCAACATATAAAAAAAATAGGGCAGCAAGTTTATACTTTCCACAGGACACTCAAAATCTTAGGGACAAACACTGTAAGCTATAAGTTGTTTTCTAAGCTATCTTGGAGAGCTTATCAAAATAAGTTGAAAATAGCTTATAGACATGTCATAAGCCGTTTTCATAATCTCTCACAAATGCTTAGGTTAGTAGACAAGTGCAAGTCAATCCAAATGCGCCGTGATTGCTTGAATCTTCTTGTGGGTTTGGAAGGCTTGGTTTTGAGAGGAAGGAAGTGATTTCTGATTGCAGTCAAAAGCCTTTTTTTGATTTTGGATTTGAATGTAAGCGGAGGGGTTCATAAATCATAGTTGGTTGTGTATTTCTTGAAGTATGTTTTTGATGGGATTTCTAAGCTGAATGTGAGCTATTACGATGGGTTAATTGTGATTCTTGAGTTTAAACATTTATTCTTTTTGATCATCGGATGAGTTTTCTTGGAATATATTAATTGAAAGATAATCTAGTAGATTTAGACTTGTGGTATTTATTCAGTTTTATCTAAAAAAAATCCAAATCTGAACTTGTTGATCGTAAGTGATTGTTTTAGAGAAAACAAAGAGATTGATGCTATCGTTTTAAGCTGAATTTAGAATACGATAGGATCATTATTTCAGGTGATTGACAATTTTACACTGTAAAGAACACAATCCTAAGGTTTTTCAAACTTGTTAAATTGAAGATAAGATGTATCTTGTCGACGGCTTCTTAAAATTTGGTGTGTTCAACCATAACTTGTTTTTTCACATTCATGTGGATTTAGACTCTGTTATCTATAATGTGAAAGGCAACATAATTATTATTATTTTTCCATTTTCCTTCAGTGCTGCAGTAAATGCGGAGACACGGGAAGAAGTTGCCATTAAGAAGGTTGGCAATGCATTTGACAACAGAATTGATGCTAAAAGGACCTTACGAGAAATTAAACTTCAGCGGCACATGGATCATGAAAATGTAATTTGATAAACCATTTACTTCAAGGCATTCTTACTTAAATTTTGTTTGAATAATTTCTTTATGCTTTAATGGATCAACAGATACTGATTTTTCTAGAACAAAACAGATACTTTCCATTTGTCAGCCAGTTTCTAGATATAACTTCGCAATTCTCCCTGATTCATGAAAAATTTGTGATTGTATTTCAATTCTATAATCTTTATTAGAATTCAATTTCAAACAAGGCTGTTTACTTACCGGTTACCTCTCCAATGCAGGTAATAGCCCTCAAGGACATTATACGACCACCACAGACGGAGAATTTCAATGATGTGTACATTGTTTATGAGTTAATGGATACTGATCTGCATCAAATAATTCGTTCCAATCAACCATTGACTGATGATCATTGTCGGGTTAGCACTGCACCTATTTTTTTTGTAGCATATGGCTTTTAATGTCTTCCTAAATGGAAGATCTTTAGATTATGCCACTGGTAATCTATTCTCCTGTGTTTGATTAGCTTAATCCAAATGGAAATGATAGCTTTTGACTGAAAAGTTTGTGTTAAATTGTTTTCTTACTCAATAACTTTTACTTTTCTTTTGAATCACAATAGTACTCAACAAGCAAAGATTTTTTTAGCAATAGATATTTAATTTGTGAACATACTATCATTCAGCAACTGATACGATAAGTTTTTCCAGTATTTTCTGTATCAGTTGTTACGAGGACTGAAATATGTACACTCAGCAAACGTTCTTCACCGTGATCTAAAGCCTAGCAACTTGCTACTGAATTCCAATTGTGATCTTAAGATTGGAGACTTTGGTCTAGCTAGAACTACATCTGAAACCGATTTCATGACTGAGTATGTGGTTACTCGATGGTACCGAGCTCCAGAATTGCTTCTAAATTGTTCAGAATATACTGCAGCCATTGATATATGGTCTGTTGGTTGCATCCTTGGTGAAATCATGACAAGACAACCCCTATTTCCTGGGAAAGATTATGTTCATCAGCTCAAATTGATCACAGAGGTAATAATAGGCCATGCATTTTGCGTTAAATATTGCAAATTATGTCATATTCTTTGATCCTTTTCAGACTTGAGCCTTCTTGAAATTTGATTTTAGTTTGACAAATTTTCTTTGATTAAAAAAGCTCATAGGTTCGCCTGATGATGCCAGCCTTGGATTTATACGAAGTGATAATGCTCGTAGATATGTAAAACAGCTTCCTCAATATCCAAGGCAGCAATTTGCTGCTAGGTTTCCCAACATGTCTCCTGGCGCTGTTGATTTGTTAGAGAGGATGCTTGTTTTTGATCCAAACAGGCGCATTACAGGTAAACTCACATGTTTGATCTTTTATTTTATTTTTCTTTATAATATTATTCCCTTCTAAATTTCTATTATTTTCTTACCATTGCTATATAGTTGACGAGGCTCTGCGTCACCAATACTTGGCACCTCTCCATGATATTAACGAGGAACCTGTTTGCTCCAGACCTTTCAATTTTGATTTGAGAAACCGTCTTTCACTGAAGCAGATATCAAGGAGCTCATCTGGAGAGAATCTGTGA

Protein sequence

>MS.gene058519.t1

MSLASSDHNNIQGVLTHGGRYVQYNIYGNLFEVSNKYVPPIRPIGRGAYGIVCAAVNAETREEVAIKKVGNAFDNRIDAKRTLREIKLQRHMDHENVIALKDIIRPPQTENFNDVYIVYELMDTDLHQIIRSNQPLTDDHCRYFLYQLLRGLKYVHSANVLHRDLKPSNLLLNSNCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDIWSVGCILGEIMTRQPLFPGKDYVHQLKLITELIGSPDDASLGFIRSDNARRYVKQLPQYPRQQFAARFPNMSPGAVDLLERMLVFDPNRRITVDEALRHQYLAPLHDINEEPVCSRPFNFDLRNRLSLKQISRSSSGENL