AlfalfaGEDB | MS.gene004136

M. sativa cultivar XinJiangDaYe / MS.gene004136

KEGG: K04371
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004707 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene004136.t1	XP_003606524.1	99.7	374	1	0	1	374	1	374	4.30E-218	766.9

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene004136.t1	Q40531	80.8	364	70	0	4	367	2	365	5.7e-179	628.2

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene004136.t1	G7JRJ9	99.7	374	1	0	1	374	1	374	3.1e-218	766.9

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene004136	MS.gene39573	PPI
MS.gene004136	MS.gene04991	PPI
MS.gene004136	MS.gene004143	PPI
MS.gene004136	MS.gene019674	PPI
MS.gene004136	MS.gene53859	PPI
MS.gene004136	MS.gene94570	PPI
MS.gene004136	MS.gene049843	PPI
MS.gene004136	MS.gene42314	PPI
MS.gene004136	MS.gene005341	PPI
MS.gene004136	MS.gene84270	PPI

Showing 1 to 10 of 33 entries

Previous1 2 3 4Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene004136.t1	MTR_4g061320	99.733	374	1	0	1	374	1	374	0.0	776
MS.gene004136.t1	MTR_7g078690	75.556	360	88	0	8	367	6	365	0.0	589
MS.gene004136.t1	MTR_8g028720	74.515	361	92	0	7	367	4	364	0.0	584
MS.gene004136.t1	MTR_8g098845	76.836	354	82	0	14	367	26	379	0.0	576
MS.gene004136.t1	MTR_5g010030	75.141	354	88	0	14	367	15	368	0.0	564
MS.gene004136.t1	MTR_4g087620	70.685	365	106	1	6	370	21	384	0.0	559
MS.gene004136.t1	MTR_4g061130	63.352	352	114	1	19	370	18	354	1.53e-173	487
MS.gene004136.t1	MTR_3g112210	58.873	355	142	4	20	373	14	365	6.31e-154	438
MS.gene004136.t1	MTR_4g087620	75.299	251	62	0	6	256	21	271	9.01e-146	414
MS.gene004136.t1	MTR_8g086000	55.491	346	143	5	26	366	19	358	8.22e-138	397

Showing 1 to 10 of 500 entries

Previous1 2 3 4 5…50Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene004136.t1	AT1G07880	79.109	359	75	0	9	367	2	360	0.0	616
MS.gene004136.t1	AT4G01370	76.389	360	85	0	8	367	11	370	0.0	589
MS.gene004136.t1	AT1G01560	74.719	356	90	0	12	367	12	367	0.0	561
MS.gene004136.t1	AT4G11330	71.709	357	101	0	11	367	14	370	0.0	552
MS.gene004136.t1	AT2G46070	69.341	349	107	0	19	367	54	402	0.0	526
MS.gene004136.t1	AT2G46070	69.341	349	107	0	19	367	20	368	0.0	525
MS.gene004136.t1	AT2G43790	69.081	359	110	1	12	370	35	392	0.0	525
MS.gene004136.t1	AT3G45640	66.282	347	117	0	19	365	17	363	0.0	519
MS.gene004136.t1	AT1G01560	74.051	316	82	0	1	316	1	316	1.34e-175	492
MS.gene004136.t1	AT3G59790	63.483	356	129	1	15	370	35	389	3.39e-173	488

Showing 1 to 10 of 500 entries

Previous1 2 3 4 5…50Next

Find 78 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGGAGCCTCTCTTTCC+TGG	0.313796	4.2:-42890582	MS.gene004136:CDS
AAACCAAGATCTTCTTCATT+TGG	0.331751	4.2:+42890385	None:intergenic
AAAGGAACTTTGATTCACGA+TGG	0.603654	4.2:-42893847	MS.gene004136:CDS
AAATCAAAGACGAAAGGGGA+TGG	0.545402	4.2:+42890058	None:intergenic
AACAGTTCAGTAGCAATTCA+GGG	0.507852	4.2:+42890664	None:intergenic
AAGGGCTGCTTGTCTACGTG+CGG	0.555114	4.2:+42890322	None:intergenic
AAGTCTTCATGAGATCAACG+AGG	0.827270	4.2:-42890092	MS.gene004136:CDS
AATTAAACTTCTCTGTCACA+TGG	0.619475	4.2:-42893533	MS.gene004136:CDS
ACAAGCAGCCCTTTGCAGAG+AGG	0.599799	4.2:-42890312	MS.gene004136:CDS
ACACATACCAGTTATGCGTT+TGG	0.438729	4.2:+42890228	None:intergenic

Showing 1 to 10 of 78 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAACCAAGATCTTCTTCATT+TGG	+	chr4.2:42893474-42893493	None:intergenic	30.0%
AAAGAAAGATGAAGTTGAGA+AGG	-	chr4.2:42892009-42892028	MS.gene004136:intron	30.0%
AATTAAACTTCTCTGTCACA+TGG	-	chr4.2:42890323-42890342	MS.gene004136:CDS	30.0%
ACGAAGAGAAAAAAAAGAAG+AGG	+	chr4.2:42893671-42893690	None:intergenic	30.0%
AGATGAATAGTACAAACCAA+GGG	-	chr4.2:42891453-42891472	MS.gene004136:intron	30.0%
AGATTAATGGTAAGTGGTTT+GGG	-	chr4.2:42892458-42892477	MS.gene004136:intron	30.0%
AGCAGAAAACAAACAACTAA+TGG	-	chr4.2:42890856-42890875	MS.gene004136:CDS	30.0%
AGCCATTAGGATTAGATTAA+TGG	-	chr4.2:42892445-42892464	MS.gene004136:intron	30.0%
AGGATTAGATTAATGGTAAG+TGG	-	chr4.2:42892452-42892471	MS.gene004136:intron	30.0%
ATAAGTTTAGTGAGACTGTT+TGG	+	chr4.2:42890913-42890932	None:intergenic	30.0%

Showing 1 to 10 of 239 entries

Previous1 2 3 4 5…24Next

Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	42889970	42893908	42889970	ID=MS.gene004136
chr4.2	mRNA	42889970	42893908	42889970	ID=MS.gene004136.t1;Parent=MS.gene004136
chr4.2	exon	42893745	42893908	42893745	ID=MS.gene004136.t1.exon1;Parent=MS.gene004136.t1
chr4.2	CDS	42893745	42893908	42893745	ID=cds.MS.gene004136.t1;Parent=MS.gene004136.t1
chr4.2	exon	42893522	42893651	42893522	ID=MS.gene004136.t1.exon2;Parent=MS.gene004136.t1
chr4.2	CDS	42893522	42893651	42893522	ID=cds.MS.gene004136.t1;Parent=MS.gene004136.t1
chr4.2	exon	42893294	42893431	42893294	ID=MS.gene004136.t1.exon3;Parent=MS.gene004136.t1
chr4.2	CDS	42893294	42893431	42893294	ID=cds.MS.gene004136.t1;Parent=MS.gene004136.t1
chr4.2	exon	42890545	42890877	42890545	ID=MS.gene004136.t1.exon4;Parent=MS.gene004136.t1
chr4.2	CDS	42890545	42890877	42890545	ID=cds.MS.gene004136.t1;Parent=MS.gene004136.t1
chr4.2	exon	42890236	42890419	42890236	ID=MS.gene004136.t1.exon5;Parent=MS.gene004136.t1
chr4.2	CDS	42890236	42890419	42890236	ID=cds.MS.gene004136.t1;Parent=MS.gene004136.t1
chr4.2	exon	42889970	42890145	42889970	ID=MS.gene004136.t1.exon6;Parent=MS.gene004136.t1
chr4.2	CDS	42889970	42890145	42889970	ID=cds.MS.gene004136.t1;Parent=MS.gene004136.t1

Gene Sequence

>MS.gene004136

ATGGAAAACAAAAACCCTGAATCTGAGAAAGCAAACTCCAAAGGAACTTTGATTCACGATGGAAAATACATTCAATACAACGTCTTAGGCAACCTTTTCGAAGTCTACTCCAACTACATTCCTCCTCTTCAACCCGTCGGTCGCGGCGCATACGGCATCGTTTGGTGAACTCACTCATCTTTCACTTCAATTTATTTATTTATTTTTCAACTTTAATTTTCATTTTAAATTATTAATTTTATTGTATATTATTGTAGCTGTGCAACGAACTCAGATACGAATGAAGGTGTTGCGATAAAGAAGATTGGGGATGCGTTTGATAATAGGATTGATGCTAAGAGAACACTTAGGGAAATTAAACTTCTCTGTCACATGGATCATGATAATGTAAGTTTTTATTGTTAATTTAATTGTGCTTGAGTATTTTATATTTAATTAATCTGATTTAGAGGTTAATTTTGGGGTTGTTTTATGCAGGTGATTAAGATCAAGGATATAATTAAGCCAGCTGATAAGGAAAAGTTTAATGATGTGTATATTGTGTATGAGTTGATGGATACTGATCTGCATCAGATTATTCAATCAAATCAGGCTCTCACTGATGAGCACTGCCAGGTAAATAGTTGCGTGCTTTTAGGTCATTCAGAGTTAGCGTAAGTTTGAATAAATAGCTTAATTAAGTGCTTATTGAGTAAGCACTGCACCCGTGTATAAACTATGGACCTCTCTGGTTAAATATCTTATTTGAAGCTTATAGTGCAAGTGCTTCTCATGACGAGCGTTTATGTATAAGCTATTTCTATAGCAAGAGATAAAATAAAGTTCAATTTTTTACGTATAAGCTATAAGCTGTTTTCATAAGCTATCATGGAGAACTTATGAAAAAAGCAGAAAACAAACAACTAATGGTCAATGTTATAAACTGTTTTCATAAGTTCCCCCAAACAGTCTCACTAAACTTATATCAGTAGATAAGCTCAGATAAGTTAGTCAAAGAGAAAGGGCCTGTTTGGATTGACTTATTTGAGTTTATCCACTGACATAAGCACCCGTGACACTGGGAGAACTTATGAAAAAAAACTTATGACATGTTCATAAGCTATTTTCAGCTTATTTCCATAAGCTCTCCTGGTTTGCTTATGAAAATAGTTTATAGATTATCCGAACACACTTTTACTTTATTTTATCTTGTGTTATAGAAAAAGTTTATTCATAAGTGCTTAATATGCTATAATCTGAAAAATAAGTTGTGTATCTAAACAGGACCAAAACATAGTTTTTATTTTATTTTTTCTTTTCCTTTTTATATATAAGTTGTAAGGTGGTTTTTCTAATTATTGGGGAGCTTACTGATATAGGTTGGAAACAGTTTATAGACATGGCATAAGCTATTTTATAAGCTCTCTCAAACACTCTTATACTTTATAAGTGTTTATTCTAGTAGATACATGCAAATAAGTTGCTGATAAGTCAATCCAAACACAGATGAATAGTACAAACCAAGGGAATTGTACAAGTGAGAAAAGTAGACGTGTTTAAATGAGTAAAAATATGAAAAAGTAGAAGTGTGTAAAAGTGAGCGTGTGCATGATGGTCAATAGGGTGTGAAATGTGAATGTGAAGAAAATAGTGATTGAGTGATGAGTGTGCTGAGTTTGAGAGGAAATAAGTGTTATCGATTGCGGACAGCGGACCATGGCAGAAAGCCACAAGTCTGTCGTTTTAAGCCTCCATATCCACCATAAAACGTCATGGTGCTGCCATCCTCCACCAATCGGTCATGGAAGATATTTGACAATGCCGGAGGAAATGGATGTAACAAATGAGTGTTGGTGTGGGTCAAGAAATAAAATTTGATTGTGTGTGTAAAAGCAAATATCGAGAGTAAATACTGAATTGTAAAACAACGGTGATATGTGTCTGTGTGAGTGGGGGGGAAGGAAAAAAAGGAAAGACAAATGAGGTTGCAGTGTATAATAAGTCAAGTAAAAAGGAAGAAAAATATTTTGGTGGCTGCAAACTGTGGTCAATGTGCAACAAAAGAAAGATGAAGTTGAGAAGGATCTATGAATATAGGTAAGTTTGCATTTGTTCGGTATGCGAATGAGTATGAGAATGAGAGGGAAATGATACGAGAATGCTGTAATGAGAGAGGTTTGCTGAAGGGGGTAGTGGTAAATCCTCATATTTTTTTGAAGTGCAGCAGCAGGGGTAGTGATGAGATATTTGTAGGTCATAGAGCATTAAGAGCTCTTACAAATCCCATTTATGAGTTTACACAAGAATGACATTTTTGGTTATGGTTTCCTTGGGTATATCATTCCTAGGAATATTTGTGAACTAGAGTCTGTGAACTAGAGTCTGTGAGGCGAGAACACTGAAAAGGGGTATACAGTAACACTTGTTGTATAAAGAAATAGACATATTGAGAACTTTTGAGTGCCCATTTTTTGGGTTGAATGTTTTAGCAAAGCAAGCCATTAGGATTAGATTAATGGTAAGTGGTTTGGGTTGTTTGTATGAAGTCATAGGTTTAAACCAAACTGCCGTCATTGTGCATAAAAAGTATGTGGTGTTGAAGTTTGGAAATTATTATGTGATTGTTAGATAGCCTTGTTTGATGGAATAGAAGAGCAAAATATAACAACAGGTTTCTAATTTGTAAATGCCAAAAAAAAAAATTGTTCACAATGCTGCGATCTATTGTTCTTCATAGTGAAACTGTTACTGTGTTGTATCTATTTATAATGCAATCTATTGTTGTCCGAGGACCTTGCATACTTTTTCAGTATCAGAGATATTGATATTTTCCCTAGAAGCTGATAGTGAATTACTCTCTTGGTCTCAAATATAAGGAAAAAAGTATATGTATTTAGTTCAAATTTGGACCAGATACATGAACTTTTTTTGCTTATTTTTTTTACTGAATAGACTATTAGCTCATAATTATAAATTTACCCATCATATTTGATATGAAGCAAGGGAGTTGAAATTGAATAAAGCCTAAGCAGCGCATTAAATGTCATTGCAGTATTTTCTATATCAACTCTTGAGAGGATTGAAGTACATACACTCTGCAAATGTTTTGCACCGAGATCTAAAACCAAGCAATTTACTTCTGAATGCAAACTGTGATCTCAAAATATGCGACTTTGGGCTTGCCAGAACAACCTCTGAGACAGACTTCATGACAGAGTATGTTGTGACTCGTTGGTACAGAGCCCCTGAATTGCTACTGAACTGTTCAGAATATACTGCTGCTATTGATGTATGGTCGGTTGGTTGCATTTTGATGGAGATAATTAAAAGGGAGCCTCTCTTTCCTGGCAAAGATTATGTTCAGCAATTGGCGCTCATAACTGAGGTATTTATCCACTCACTGTATTAGTTGCTGTTAGTGTTTATCGAATTTGCAAAAATGTTGTATGATAGGACTATTTCTTTCTGAAAATGTATCAACAAATTTCTCATAATTATCTTCCAAAACAGTTGTTAGGTTCACCAAATGAAGAAGATCTTGGTTTCCTCAGAAGTGATAATGCAAAGAAATATGTTAAGCAGCTCCCGCACGTAGACAAGCAGCCCTTTGCAGAGAGGTTTCCTGATATGTCTCCACTGGCACTTGATCTTGCTGAGAAAATGTTGGTTTTTGATCCCTCCAAACGCATAACTGGTATGTGTTTTAGTGTTAAATATCCCCTCTTCTTTTTTTTCTCTTCGTTCATTTGCTTTTAAGTTTTAATTTTATTCTATGATTGCATAGTTGAGGAAGCACTGAATCACCCATATATGTCAAGTCTTCATGAGATCAACGAGGAGCCTGTTTGTCCATCCCCTTTCGTCTTTGATTTTGAACAGGCAACTCTGAATGAAGATGATATAAAGGAGCTCATATGGAGGGAGTCTCTGAACTTCTGCAAGGAGCAGATTCTTGAATAG

Protein sequence

>MS.gene004136.t1

MENKNPESEKANSKGTLIHDGKYIQYNVLGNLFEVYSNYIPPLQPVGRGAYGIVCCATNSDTNEGVAIKKIGDAFDNRIDAKRTLREIKLLCHMDHDNVIKIKDIIKPADKEKFNDVYIVYELMDTDLHQIIQSNQALTDEHCQYFLYQLLRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDVWSVGCILMEIIKREPLFPGKDYVQQLALITELLGSPNEEDLGFLRSDNAKKYVKQLPHVDKQPFAERFPDMSPLALDLAEKMLVFDPSKRITVEEALNHPYMSSLHEINEEPVCPSPFVFDFEQATLNEDDIKELIWRESLNFCKEQILE