Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058573.t1 | XP_003630983.1 | 95.1 | 286 | 14 | 0 | 1 | 286 | 1 | 286 | 4.90E-125 | 457.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058573.t1 | G7LBH2 | 95.1 | 286 | 14 | 0 | 1 | 286 | 1 | 286 | 3.5e-125 | 457.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058573 | MS.gene31022 | 0.803045 | 4.20E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058573.t1 | MTR_8g105830 | 95.205 | 292 | 11 | 1 | 1 | 292 | 1 | 289 | 0.0 | 566 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058573.t1 | AT1G71080 | 54.355 | 287 | 107 | 7 | 1 | 283 | 1 | 267 | 9.21e-92 | 276 |
| MS.gene058573.t1 | AT5G38050 | 42.361 | 288 | 89 | 9 | 7 | 284 | 6 | 226 | 1.73e-57 | 187 |
Find 76 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTTCCTCAACTCCATTTA+TGG | 0.126297 | 4.4:+1661452 | None:intergenic |
| ACCTCACCAGCTGCCATAAA+TGG | 0.254268 | 4.4:-1661465 | MS.gene058573:CDS |
| CTCTCCCCTCTGCATTCACC+TGG | 0.289352 | 4.4:+1661229 | None:intergenic |
| TTACCCTCAAATGTGACTTT+AGG | 0.304450 | 4.4:+1663237 | None:intergenic |
| AACAGAGACTCTATTCTCTT+TGG | 0.311741 | 4.4:+1663287 | None:intergenic |
| GGAACTGTTGCTGCCTCATC+TGG | 0.316472 | 4.4:-1663081 | MS.gene058573:CDS |
| TGCCTCATCTGGACCGGGTT+TGG | 0.330284 | 4.4:-1663070 | MS.gene058573:CDS |
| CCTGTAAAACCAGCCTCTTT+TGG | 0.357788 | 4.4:-1663021 | MS.gene058573:CDS |
| TCTCAGAGCCTCAGCAGCAT+TGG | 0.359508 | 4.4:+1661254 | None:intergenic |
| CTCAGAGCCTCAGCAGCATT+GGG | 0.364535 | 4.4:+1661255 | None:intergenic |
| AAGAGTACAGTATTTGTTAG+AGG | 0.378243 | 4.4:+1663368 | None:intergenic |
| GTTAGATTGTACCATCTATC+AGG | 0.384853 | 4.4:+1663417 | None:intergenic |
| ACCTGAGGATGACAATGATA+TGG | 0.391142 | 4.4:-1661391 | MS.gene058573:CDS |
| AGCAGTAGTGCTAGTGGTAG+TGG | 0.413902 | 4.4:-1661156 | MS.gene058573:CDS |
| TCCATATCATTGTCATCCTC+AGG | 0.415518 | 4.4:+1661390 | None:intergenic |
| GAGTCTTCAGCTGCTGCCGC+TGG | 0.415827 | 4.4:-1663102 | MS.gene058573:CDS |
| AAGGGATAATGTTGAAGAAA+AGG | 0.424039 | 4.4:-1661364 | MS.gene058573:CDS |
| GAATTTCACAACAATCAGAT+TGG | 0.430205 | 4.4:-1663264 | MS.gene058573:CDS |
| GAAGTGGAGCGTATTGATAT+TGG | 0.432598 | 4.4:-1662379 | MS.gene058573:CDS |
| TGACAATGATATGGAAGAAA+GGG | 0.437629 | 4.4:-1661382 | MS.gene058573:CDS |
| GTTGAAGAAAAGGATAATGT+TGG | 0.444097 | 4.4:-1661354 | MS.gene058573:CDS |
| TTGGTCTTGCGTAGTAATCC+AGG | 0.446614 | 4.4:+1663306 | None:intergenic |
| TCAACTCCATTTATGGCAGC+TGG | 0.450508 | 4.4:+1661459 | None:intergenic |
| TTCGATTGGAGCGTCTCGAC+AGG | 0.454027 | 4.4:-1663161 | MS.gene058573:CDS |
| TGTTGCTGCCTCATCTGGAC+CGG | 0.463989 | 4.4:-1663076 | MS.gene058573:CDS |
| GTGAATGCAGAGGGGAGAGA+GGG | 0.464101 | 4.4:-1661225 | MS.gene058573:CDS |
| CTGAGGCATCTTCGAAAGCC+TGG | 0.468947 | 4.4:-1663126 | MS.gene058573:CDS |
| GATCCTCGCTCATCTCCCAT+TGG | 0.469494 | 4.4:-1663048 | MS.gene058573:CDS |
| CTGCTCCTGAGCCTGATAGA+TGG | 0.471226 | 4.4:-1663428 | MS.gene058573:CDS |
| ATGACAATGATATGGAAGAA+AGG | 0.472392 | 4.4:-1661383 | MS.gene058573:CDS |
| ATCCTCGCTCATCTCCCATT+GGG | 0.480262 | 4.4:-1663047 | MS.gene058573:CDS |
| TCTAGCAGTAGTAGTGGCAG+TGG | 0.481189 | 4.4:-1661180 | MS.gene058573:CDS |
| TGATGGTCAGACACTTCGAT+TGG | 0.488630 | 4.4:-1663175 | MS.gene058573:CDS |
| AGATGGTACAATCTAACCTT+AGG | 0.489835 | 4.4:-1663411 | MS.gene058573:CDS |
| TTAGTCTTATCGACTGAAGC+AGG | 0.492973 | 4.4:+1663330 | None:intergenic |
| GCAGCAGCTGAAGACTCACC+AGG | 0.499684 | 4.4:+1663108 | None:intergenic |
| ATTGGTGAACCTGAAAATAC+TGG | 0.503387 | 4.4:-1662361 | MS.gene058573:intron |
| TCCATTTATGGCAGCTGGTG+AGG | 0.508999 | 4.4:+1661464 | None:intergenic |
| AAACCTAAAGTCACATTTGA+GGG | 0.513120 | 4.4:-1663240 | MS.gene058573:CDS |
| TCAGTCGATAAGACTAAGCC+TGG | 0.517873 | 4.4:-1663324 | MS.gene058573:CDS |
| GGTGAATGCAGAGGGGAGAG+AGG | 0.526077 | 4.4:-1661226 | MS.gene058573:CDS |
| GCATCAAATTTGATTCTAAG+AGG | 0.532093 | 4.4:-1661527 | MS.gene058573:CDS |
| ATCTTTGAAAGAAGATCCTA+AGG | 0.534513 | 4.4:+1663395 | None:intergenic |
| GCTCCTGCCACTACCAAAAG+AGG | 0.534680 | 4.4:+1663008 | None:intergenic |
| CAAAGGACCCAATGCTGCTG+AGG | 0.535918 | 4.4:-1661262 | MS.gene058573:CDS |
| TGATTCTGCATAGGTTGAAG+TGG | 0.542193 | 4.4:-1662395 | MS.gene058573:intron |
| TTGTACCATCTATCAGGCTC+AGG | 0.543882 | 4.4:+1663423 | None:intergenic |
| TGCTGAGGCTCTGAGAGCCC+AGG | 0.547103 | 4.4:-1661247 | MS.gene058573:CDS |
| TCTCCCCTCTGCATTCACCT+GGG | 0.548515 | 4.4:+1661230 | None:intergenic |
| GTTGCTGCCTCATCTGGACC+GGG | 0.549583 | 4.4:-1663075 | MS.gene058573:CDS |
| AAAACCTAAAGTCACATTTG+AGG | 0.551606 | 4.4:-1663241 | MS.gene058573:CDS |
| GCAGTAGTGCTAGTGGTAGT+GGG | 0.553798 | 4.4:-1661155 | MS.gene058573:CDS |
| TGAATGCAGAGGGGAGAGAG+GGG | 0.554259 | 4.4:-1661224 | MS.gene058573:CDS |
| AGAGCCCAGGTGAATGCAGA+GGG | 0.556282 | 4.4:-1661234 | MS.gene058573:CDS |
| AGCAGCAGCAGTGACAGTGA+AGG | 0.569169 | 4.4:-1661129 | MS.gene058573:CDS |
| ATTGCTGATGTGGATGATAG+TGG | 0.572395 | 4.4:-1661297 | MS.gene058573:CDS |
| TGATGATGAGATTGCTGATG+TGG | 0.579571 | 4.4:-1661307 | MS.gene058573:CDS |
| ATCCAAACCCGGTCCAGATG+AGG | 0.581573 | 4.4:+1663068 | None:intergenic |
| CTGCCACTACCAAAAGAGGC+TGG | 0.584867 | 4.4:+1663012 | None:intergenic |
| AGCTGCCATAAATGGAGTTG+AGG | 0.584912 | 4.4:-1661457 | MS.gene058573:CDS |
| GGATGATAGTGGTGATGAGG+TGG | 0.599064 | 4.4:-1661286 | MS.gene058573:CDS |
| TGAGGCAGCAACAGTTCCAG+CGG | 0.600536 | 4.4:+1663086 | None:intergenic |
| TCTACTTCTAGCAGTAGTAG+TGG | 0.605712 | 4.4:-1661186 | MS.gene058573:CDS |
| AGTGGAAGCAGTAGTGCTAG+TGG | 0.607365 | 4.4:-1661162 | MS.gene058573:CDS |
| TCGATTGGAGCGTCTCGACA+GGG | 0.622968 | 4.4:-1663160 | MS.gene058573:CDS |
| CACATTTGAGGGTAATAGCG+AGG | 0.626625 | 4.4:-1663229 | MS.gene058573:CDS |
| GAGAGCCCAGGTGAATGCAG+AGG | 0.636886 | 4.4:-1661235 | MS.gene058573:CDS |
| GCAATCTCATCATCAGTGAG+TGG | 0.645355 | 4.4:+1661315 | None:intergenic |
| TGTGGATGATAGTGGTGATG+AGG | 0.648138 | 4.4:-1661289 | MS.gene058573:CDS |
| GATGAGCGAGGATCCAAACC+CGG | 0.651110 | 4.4:+1663057 | None:intergenic |
| GGTGAGGTAGCAGTAACAGT+GGG | 0.654678 | 4.4:+1661480 | None:intergenic |
| TTCCCAATGGGAGATGAGCG+AGG | 0.661975 | 4.4:+1663045 | None:intergenic |
| ACAGGGCTGTAAAGCAACTG+AGG | 0.680309 | 4.4:-1663143 | MS.gene058573:CDS |
| TGGTGAGGTAGCAGTAACAG+TGG | 0.687583 | 4.4:+1661479 | None:intergenic |
| AGTGGTGATGAGGTGGACAA+AGG | 0.696247 | 4.4:-1661279 | MS.gene058573:CDS |
| GAGCCCAGGTGAATGCAGAG+GGG | 0.741897 | 4.4:-1661233 | MS.gene058573:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAGTGTTTAATTTTTTAT+TGG | - | chr4.4:1661832-1661851 | MS.gene058573:intron | 10.0% |
| !!! | GTTAATTTTATTTACTAAAA+AGG | + | chr4.4:1662656-1662675 | None:intergenic | 10.0% |
| !!! | TAAGTGTTTAATTTTTTATT+GGG | - | chr4.4:1661833-1661852 | MS.gene058573:intron | 10.0% |
| !! | TAAAATTAACACAAAGTAAA+CGG | - | chr4.4:1662666-1662685 | MS.gene058573:intron | 15.0% |
| !!! | ATAGATATTAATGATCTTTT+TGG | - | chr4.4:1663134-1663153 | MS.gene058573:CDS | 15.0% |
| !!! | ATATTTTGGAAAAAAGAAAA+TGG | + | chr4.4:1662594-1662613 | None:intergenic | 15.0% |
| !!! | TTTTTTATGTTAAAAGAAAG+TGG | - | chr4.4:1661935-1661954 | MS.gene058573:intron | 15.0% |
| !! | AAAATTAACACAAAGTAAAC+GGG | - | chr4.4:1662667-1662686 | MS.gene058573:intron | 20.0% |
| !! | ATTACAAAATAACCGTATAA+AGG | + | chr4.4:1661684-1661703 | None:intergenic | 20.0% |
| !! | GGATAAGTATATGATATAAA+CGG | + | chr4.4:1661776-1661795 | None:intergenic | 20.0% |
| !!! | AAACAATTGTATGCATATTT+TGG | + | chr4.4:1662608-1662627 | None:intergenic | 20.0% |
| !!! | AAAGATTTTCAGTGTTTTTA+TGG | - | chr4.4:1661710-1661729 | MS.gene058573:intron | 20.0% |
| !!! | AGAAAATTACATAGACATTT+TGG | + | chr4.4:1662867-1662886 | None:intergenic | 20.0% |
| !!! | ATTATAGAATGATTTGAAGT+TGG | - | chr4.4:1661958-1661977 | MS.gene058573:intron | 20.0% |
| !!! | TGTTTAATTTTTTATTGGGA+GGG | - | chr4.4:1661837-1661856 | MS.gene058573:intron | 20.0% |
| ! | AAATTAACACAAAGTAAACG+GGG | - | chr4.4:1662668-1662687 | MS.gene058573:intron | 25.0% |
| ! | AAGATGAAAATGAAAAGCTT+AGG | + | chr4.4:1662694-1662713 | None:intergenic | 25.0% |
| ! | ACAACTATGCTAAAGATAAT+TGG | + | chr4.4:1661607-1661626 | None:intergenic | 25.0% |
| ! | ATCCTAAAAATGTATGATGT+TGG | - | chr4.4:1661651-1661670 | MS.gene058573:intron | 25.0% |
| ! | GAAAAGAGAAAAGAAAAACA+AGG | + | chr4.4:1662130-1662149 | None:intergenic | 25.0% |
| !! | AATGTTTTCACAAAGTAGAT+CGG | + | chr4.4:1662438-1662457 | None:intergenic | 25.0% |
| !! | ACTTACAAATCTCTTTTAGA+AGG | - | chr4.4:1662036-1662055 | MS.gene058573:intron | 25.0% |
| !!! | GTGATTTATATTTTTGAGGT+TGG | - | chr4.4:1661980-1661999 | MS.gene058573:intron | 25.0% |
| !!! | GTGTTTAATTTTTTATTGGG+AGG | - | chr4.4:1661836-1661855 | MS.gene058573:intron | 25.0% |
| !!! | GTTGGTGATTTATATTTTTG+AGG | - | chr4.4:1661976-1661995 | MS.gene058573:intron | 25.0% |
| !!! | GTTTAATTTTTTATTGGGAG+GGG | - | chr4.4:1661838-1661857 | MS.gene058573:intron | 25.0% |
| !!! | TTGTATGACTTTCTGTTTTT+CGG | - | chr4.4:1662336-1662355 | MS.gene058573:intron | 25.0% |
| AAAACCTAAAGTCACATTTG+AGG | - | chr4.4:1661316-1661335 | MS.gene058573:CDS | 30.0% | |
| AAACCTAAAGTCACATTTGA+GGG | - | chr4.4:1661317-1661336 | MS.gene058573:CDS | 30.0% | |
| AAGGGATAATGTTGAAGAAA+AGG | - | chr4.4:1663193-1663212 | MS.gene058573:CDS | 30.0% | |
| ACGAGAAAATCAATTAAGCA+AGG | + | chr4.4:1662278-1662297 | None:intergenic | 30.0% | |
| ATAGATACATGCATTTCACT+AGG | - | chr4.4:1661895-1661914 | MS.gene058573:intron | 30.0% | |
| ATGACAATGATATGGAAGAA+AGG | - | chr4.4:1663174-1663193 | MS.gene058573:CDS | 30.0% | |
| ATGTACCTAATTGAAGGAAA+AGG | + | chr4.4:1662398-1662417 | None:intergenic | 30.0% | |
| GAATTTCACAACAATCAGAT+TGG | - | chr4.4:1661293-1661312 | MS.gene058573:CDS | 30.0% | |
| GCATCAAATTTGATTCTAAG+AGG | - | chr4.4:1663030-1663049 | MS.gene058573:CDS | 30.0% | |
| GTTGAAGAAAAGGATAATGT+TGG | - | chr4.4:1663203-1663222 | MS.gene058573:CDS | 30.0% | |
| TCATCTTCTCTTCATCAAAA+TGG | + | chr4.4:1662534-1662553 | None:intergenic | 30.0% | |
| TGACAATGATATGGAAGAAA+GGG | - | chr4.4:1663175-1663194 | MS.gene058573:CDS | 30.0% | |
| ! | AAAAAAGACATGTGTTGCTA+GGG | + | chr4.4:1662318-1662337 | None:intergenic | 30.0% |
| ! | AAGAGTACAGTATTTGTTAG+AGG | + | chr4.4:1661192-1661211 | None:intergenic | 30.0% |
| ! | ATCTTTGAAAGAAGATCCTA+AGG | + | chr4.4:1661165-1661184 | None:intergenic | 30.0% |
| ! | ATGTTTTCACAAAGTAGATC+GGG | + | chr4.4:1662437-1662456 | None:intergenic | 30.0% |
| ! | CTCCAACATCATACATTTTT+AGG | + | chr4.4:1661656-1661675 | None:intergenic | 30.0% |
| ! | TTTTCCTTCAATTAGGTACA+TGG | - | chr4.4:1662397-1662416 | MS.gene058573:intron | 30.0% |
| !! | ATTAATGATCTTTTTGGCAG+TGG | - | chr4.4:1663140-1663159 | MS.gene058573:CDS | 30.0% |
| !! | CATTTACATTGATTCTGCAT+AGG | - | chr4.4:1662153-1662172 | MS.gene058573:intron | 30.0% |
| !!! | AGACACGTATGAATTTTTTC+TGG | - | chr4.4:1662891-1662910 | MS.gene058573:intron | 30.0% |
| !!! | GGTTTTGATTTTGTGTGTTT+TGG | - | chr4.4:1662057-1662076 | MS.gene058573:intron | 30.0% |
| AAATACTGGTATGTCTGATC+TGG | - | chr4.4:1662210-1662229 | MS.gene058573:intron | 35.0% | |
| AACAGAGACTCTATTCTCTT+TGG | + | chr4.4:1661273-1661292 | None:intergenic | 35.0% | |
| AGATGGTACAATCTAACCTT+AGG | - | chr4.4:1661146-1661165 | MS.gene058573:CDS | 35.0% | |
| ATGTTCCTCAACTCCATTTA+TGG | + | chr4.4:1663108-1663127 | None:intergenic | 35.0% | |
| ATTGGTGAACCTGAAAATAC+TGG | - | chr4.4:1662196-1662215 | MS.gene058573:intron | 35.0% | |
| GATGTTATAGCAGTATGACA+AGG | + | chr4.4:1661797-1661816 | None:intergenic | 35.0% | |
| GTTAGATTGTACCATCTATC+AGG | + | chr4.4:1661143-1661162 | None:intergenic | 35.0% | |
| GTTGGAGACTATCCTTTATA+CGG | - | chr4.4:1661669-1661688 | MS.gene058573:intron | 35.0% | |
| TAACGTTGTTGATGTATGAC+AGG | - | chr4.4:1663008-1663027 | MS.gene058573:CDS | 35.0% | |
| TGCTAAAGATAATTGGCAGT+AGG | + | chr4.4:1661600-1661619 | None:intergenic | 35.0% | |
| TTACCCTCAAATGTGACTTT+AGG | + | chr4.4:1661323-1661342 | None:intergenic | 35.0% | |
| TTACTAAAAAGGGAGATGAG+AGG | + | chr4.4:1662645-1662664 | None:intergenic | 35.0% | |
| ! | AGTTGATACTTTACTGAACC+TGG | - | chr4.4:1661734-1661753 | MS.gene058573:intron | 35.0% |
| ! | CAAAAAAGACATGTGTTGCT+AGG | + | chr4.4:1662319-1662338 | None:intergenic | 35.0% |
| ! | TCAGACATACCAGTATTTTC+AGG | + | chr4.4:1662208-1662227 | None:intergenic | 35.0% |
| ! | TGCAACCTTTTCCTTCAATT+AGG | - | chr4.4:1662390-1662409 | MS.gene058573:intron | 35.0% |
| !! | CATTTTGGAAAAAGCAGCAA+AGG | + | chr4.4:1662852-1662871 | None:intergenic | 35.0% |
| !!! | GATGCTGTTTTGTTCTTTGA+TGG | - | chr4.4:1661365-1661384 | MS.gene058573:CDS | 35.0% |
| !!! | TTTTGAGGTTGGTGTATGTT+GGG | - | chr4.4:1661991-1662010 | MS.gene058573:intron | 35.0% |
| !!! | TTTTTGAGGTTGGTGTATGT+TGG | - | chr4.4:1661990-1662009 | MS.gene058573:intron | 35.0% |
| ACCTGAGGATGACAATGATA+TGG | - | chr4.4:1663166-1663185 | MS.gene058573:CDS | 40.0% | |
| ATTGCTGATGTGGATGATAG+TGG | - | chr4.4:1663260-1663279 | MS.gene058573:CDS | 40.0% | |
| TCCATATCATTGTCATCCTC+AGG | + | chr4.4:1663170-1663189 | None:intergenic | 40.0% | |
| TCCTCCATGTACCTAATTGA+AGG | + | chr4.4:1662404-1662423 | None:intergenic | 40.0% | |
| TCCTTCAATTAGGTACATGG+AGG | - | chr4.4:1662400-1662419 | MS.gene058573:intron | 40.0% | |
| TCTACTTCTAGCAGTAGTAG+TGG | - | chr4.4:1663371-1663390 | MS.gene058573:CDS | 40.0% | |
| ! | AGCTGTTACTTCTATGGTGA+TGG | - | chr4.4:1662083-1662102 | MS.gene058573:intron | 40.0% |
| ! | GAAGTGGAGCGTATTGATAT+TGG | - | chr4.4:1662178-1662197 | MS.gene058573:intron | 40.0% |
| ! | TGATGATGAGATTGCTGATG+TGG | - | chr4.4:1663250-1663269 | MS.gene058573:CDS | 40.0% |
| ! | TGATTCTGCATAGGTTGAAG+TGG | - | chr4.4:1662162-1662181 | MS.gene058573:intron | 40.0% |
| !! | TTAGTCTTATCGACTGAAGC+AGG | + | chr4.4:1661230-1661249 | None:intergenic | 40.0% |
| AATTGGCAGTAGGCACTTAC+TGG | + | chr4.4:1661590-1661609 | None:intergenic | 45.0% | |
| AGCTGCCATAAATGGAGTTG+AGG | - | chr4.4:1663100-1663119 | MS.gene058573:CDS | 45.0% | |
| CACATTTGAGGGTAATAGCG+AGG | - | chr4.4:1661328-1661347 | MS.gene058573:CDS | 45.0% | |
| CTGGTATGTCTGATCTGGTT+AGG | - | chr4.4:1662215-1662234 | MS.gene058573:intron | 45.0% | |
| GAAGGAAAAGGTTGCACAGT+GGG | + | chr4.4:1662386-1662405 | None:intergenic | 45.0% | |
| GAGCACGAAAACTGTCATGT+TGG | + | chr4.4:1662830-1662849 | None:intergenic | 45.0% | |
| GCAATCTCATCATCAGTGAG+TGG | + | chr4.4:1663245-1663264 | None:intergenic | 45.0% | |
| TCAACTCCATTTATGGCAGC+TGG | + | chr4.4:1663101-1663120 | None:intergenic | 45.0% | |
| TCAGTCGATAAGACTAAGCC+TGG | - | chr4.4:1661233-1661252 | MS.gene058573:CDS | 45.0% | |
| TGAAGGAAAAGGTTGCACAG+TGG | + | chr4.4:1662387-1662406 | None:intergenic | 45.0% | |
| TGATGGTCAGACACTTCGAT+TGG | - | chr4.4:1661382-1661401 | MS.gene058573:CDS | 45.0% | |
| TTGTACCATCTATCAGGCTC+AGG | + | chr4.4:1661137-1661156 | None:intergenic | 45.0% | |
| ! | AAACCAGCCTCTTTTGGTAG+TGG | - | chr4.4:1661542-1661561 | MS.gene058573:intron | 45.0% |
| ! | CCTGTAAAACCAGCCTCTTT+TGG | - | chr4.4:1661536-1661555 | MS.gene058573:intron | 45.0% |
| ! | GGTTTTACAGGCTTCCCAAT+GGG | + | chr4.4:1661527-1661546 | None:intergenic | 45.0% |
| ! | TGGCTGAGCTGTTACTTCTA+TGG | - | chr4.4:1662077-1662096 | MS.gene058573:intron | 45.0% |
| !! | TGGTTTTACAGGCTTCCCAA+TGG | + | chr4.4:1661528-1661547 | None:intergenic | 45.0% |
| !! | TGTGGATGATAGTGGTGATG+AGG | - | chr4.4:1663268-1663287 | MS.gene058573:CDS | 45.0% |
| !! | TTGGTCTTGCGTAGTAATCC+AGG | + | chr4.4:1661254-1661273 | None:intergenic | 45.0% |
| !!! | CCAAAAGAGGCTGGTTTTAC+AGG | + | chr4.4:1661539-1661558 | None:intergenic | 45.0% |
| !!! | TTAATTTTATTTACTAAAAA+GGG | + | chr4.4:1662655-1662674 | None:intergenic | 5.0% |
| AAAGGGAGATGAGAGGCTCT+TGG | + | chr4.4:1662638-1662657 | None:intergenic | 50.0% | |
| ACAGGGCTGTAAAGCAACTG+AGG | - | chr4.4:1661414-1661433 | MS.gene058573:CDS | 50.0% | |
| ACCTCACCAGCTGCCATAAA+TGG | - | chr4.4:1663092-1663111 | MS.gene058573:CDS | 50.0% | |
| AGCAGTAGTGCTAGTGGTAG+TGG | - | chr4.4:1663401-1663420 | MS.gene058573:CDS | 50.0% | |
| AGTGGAAGCAGTAGTGCTAG+TGG | - | chr4.4:1663395-1663414 | MS.gene058573:CDS | 50.0% | |
| ATCCTCGCTCATCTCCCATT+GGG | - | chr4.4:1661510-1661529 | MS.gene058573:CDS | 50.0% | |
| GCAGTAGTGCTAGTGGTAGT+GGG | - | chr4.4:1663402-1663421 | MS.gene058573:CDS | 50.0% | |
| GGACAAGCTATGTGTGTACC+AGG | + | chr4.4:1661755-1661774 | None:intergenic | 50.0% | |
| GGTGAGGTAGCAGTAACAGT+GGG | + | chr4.4:1663080-1663099 | None:intergenic | 50.0% | |
| TCCATTTATGGCAGCTGGTG+AGG | + | chr4.4:1663096-1663115 | None:intergenic | 50.0% | |
| TCTAGCAGTAGTAGTGGCAG+TGG | - | chr4.4:1663377-1663396 | MS.gene058573:CDS | 50.0% | |
| TGGTGAGGTAGCAGTAACAG+TGG | + | chr4.4:1663081-1663100 | None:intergenic | 50.0% | |
| ! | AGTGGTGATGAGGTGGACAA+AGG | - | chr4.4:1663278-1663297 | MS.gene058573:CDS | 50.0% |
| ! | TCAGGCTCAGGAGCAGTTTT+CGG | + | chr4.4:1661125-1661144 | None:intergenic | 50.0% |
| ! | TTTTGGCAGTGGAACACCTG+AGG | - | chr4.4:1663151-1663170 | MS.gene058573:CDS | 50.0% |
| !! | GGATGATAGTGGTGATGAGG+TGG | - | chr4.4:1663271-1663290 | MS.gene058573:CDS | 50.0% |
| AGAGCCCAGGTGAATGCAGA+GGG | - | chr4.4:1663323-1663342 | MS.gene058573:CDS | 55.0% | |
| AGCAGCAGCAGTGACAGTGA+AGG | - | chr4.4:1663428-1663447 | MS.gene058573:CDS | 55.0% | |
| ATCCAAACCCGGTCCAGATG+AGG | + | chr4.4:1661492-1661511 | None:intergenic | 55.0% | |
| CAAAGGACCCAATGCTGCTG+AGG | - | chr4.4:1663295-1663314 | MS.gene058573:CDS | 55.0% | |
| CTCAGAGCCTCAGCAGCATT+GGG | + | chr4.4:1663305-1663324 | None:intergenic | 55.0% | |
| CTGCCACTACCAAAAGAGGC+TGG | + | chr4.4:1661548-1661567 | None:intergenic | 55.0% | |
| CTGCTCCTGAGCCTGATAGA+TGG | - | chr4.4:1661129-1661148 | MS.gene058573:CDS | 55.0% | |
| GATCCTCGCTCATCTCCCAT+TGG | - | chr4.4:1661509-1661528 | MS.gene058573:CDS | 55.0% | |
| GATGAGCGAGGATCCAAACC+CGG | + | chr4.4:1661503-1661522 | None:intergenic | 55.0% | |
| GCTCCTGCCACTACCAAAAG+AGG | + | chr4.4:1661552-1661571 | None:intergenic | 55.0% | |
| GGAACTGTTGCTGCCTCATC+TGG | - | chr4.4:1661476-1661495 | MS.gene058573:CDS | 55.0% | |
| GTGAATGCAGAGGGGAGAGA+GGG | - | chr4.4:1663332-1663351 | MS.gene058573:CDS | 55.0% | |
| TCTCAGAGCCTCAGCAGCAT+TGG | + | chr4.4:1663306-1663325 | None:intergenic | 55.0% | |
| TCTCCCCTCTGCATTCACCT+GGG | + | chr4.4:1663330-1663349 | None:intergenic | 55.0% | |
| TGAATGCAGAGGGGAGAGAG+GGG | - | chr4.4:1663333-1663352 | MS.gene058573:CDS | 55.0% | |
| TGAGGCAGCAACAGTTCCAG+CGG | + | chr4.4:1661474-1661493 | None:intergenic | 55.0% | |
| TGTTGCTGCCTCATCTGGAC+CGG | - | chr4.4:1661481-1661500 | MS.gene058573:CDS | 55.0% | |
| TTCCCAATGGGAGATGAGCG+AGG | + | chr4.4:1661515-1661534 | None:intergenic | 55.0% | |
| ! | CTGAGGCATCTTCGAAAGCC+TGG | - | chr4.4:1661431-1661450 | MS.gene058573:CDS | 55.0% |
| ! | TCGATTGGAGCGTCTCGACA+GGG | - | chr4.4:1661397-1661416 | MS.gene058573:CDS | 55.0% |
| ! | TTCGATTGGAGCGTCTCGAC+AGG | - | chr4.4:1661396-1661415 | MS.gene058573:CDS | 55.0% |
| !!! | CAGCCTCTTTTGGTAGTGGC+AGG | - | chr4.4:1661546-1661565 | MS.gene058573:intron | 55.0% |
| CTCTCCCCTCTGCATTCACC+TGG | + | chr4.4:1663331-1663350 | None:intergenic | 60.0% | |
| GAGAGCCCAGGTGAATGCAG+AGG | - | chr4.4:1663322-1663341 | MS.gene058573:CDS | 60.0% | |
| GAGCCCAGGTGAATGCAGAG+GGG | - | chr4.4:1663324-1663343 | MS.gene058573:CDS | 60.0% | |
| GCAGCAGCTGAAGACTCACC+AGG | + | chr4.4:1661452-1661471 | None:intergenic | 60.0% | |
| GGTGAATGCAGAGGGGAGAG+AGG | - | chr4.4:1663331-1663350 | MS.gene058573:CDS | 60.0% | |
| GTTGCTGCCTCATCTGGACC+GGG | - | chr4.4:1661482-1661501 | MS.gene058573:CDS | 60.0% | |
| TGCCTCATCTGGACCGGGTT+TGG | - | chr4.4:1661487-1661506 | MS.gene058573:CDS | 60.0% | |
| GAGTCTTCAGCTGCTGCCGC+TGG | - | chr4.4:1661455-1661474 | MS.gene058573:CDS | 65.0% | |
| !! | TGCTGAGGCTCTGAGAGCCC+AGG | - | chr4.4:1663310-1663329 | MS.gene058573:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 1661098 | 1663481 | 1661098 | ID=MS.gene058573 |
| chr4.4 | mRNA | 1661098 | 1663481 | 1661098 | ID=MS.gene058573.t1;Parent=MS.gene058573 |
| chr4.4 | exon | 1662990 | 1663481 | 1662990 | ID=MS.gene058573.t1.exon1;Parent=MS.gene058573.t1 |
| chr4.4 | CDS | 1662990 | 1663481 | 1662990 | ID=cds.MS.gene058573.t1;Parent=MS.gene058573.t1 |
| chr4.4 | exon | 1662362 | 1662404 | 1662362 | ID=MS.gene058573.t1.exon2;Parent=MS.gene058573.t1 |
| chr4.4 | CDS | 1662362 | 1662404 | 1662362 | ID=cds.MS.gene058573.t1;Parent=MS.gene058573.t1 |
| chr4.4 | exon | 1661098 | 1661549 | 1661098 | ID=MS.gene058573.t1.exon3;Parent=MS.gene058573.t1 |
| chr4.4 | CDS | 1661098 | 1661549 | 1661098 | ID=cds.MS.gene058573.t1;Parent=MS.gene058573.t1 |
| Gene Sequence |
| Protein sequence |
