Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31022.t1 | XP_003602518.2 | 93.1 | 375 | 26 | 0 | 23 | 397 | 213 | 587 | 1.60E-191 | 678.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31022.t1 | Q5RC80 | 43.1 | 397 | 201 | 10 | 2 | 393 | 133 | 509 | 5.1e-69 | 263.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31022.t1 | G7JAD6 | 93.1 | 375 | 26 | 0 | 23 | 397 | 213 | 587 | 1.2e-191 | 678.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene31022 | 0.804716 | 1.89E-49 | -1.69E-46 |
| MS.gene049254 | MS.gene31022 | 0.849293 | 3.55E-60 | -1.69E-46 |
| MS.gene049321 | MS.gene31022 | -0.816783 | 4.63E-52 | -1.69E-46 |
| MS.gene049343 | MS.gene31022 | 0.977771 | 1.89E-144 | -1.69E-46 |
| MS.gene049850 | MS.gene31022 | 0.835128 | 2.01E-56 | -1.69E-46 |
| MS.gene049873 | MS.gene31022 | 0.80822 | 3.45E-50 | -1.69E-46 |
| MS.gene050156 | MS.gene31022 | 0.837089 | 6.38E-57 | -1.69E-46 |
| MS.gene050799 | MS.gene31022 | 0.805029 | 1.63E-49 | -1.69E-46 |
| MS.gene050905 | MS.gene31022 | -0.820681 | 6.03E-53 | -1.69E-46 |
| MS.gene051181 | MS.gene31022 | 0.840021 | 1.12E-57 | -1.69E-46 |
| MS.gene051247 | MS.gene31022 | 0.804691 | 1.91E-49 | -1.69E-46 |
| MS.gene051594 | MS.gene31022 | 0.80184 | 7.45E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene31022 | 0.840529 | 8.23E-58 | -1.69E-46 |
| MS.gene052037 | MS.gene31022 | 0.802173 | 6.36E-49 | -1.69E-46 |
| MS.gene052108 | MS.gene31022 | 0.810943 | 8.96E-51 | -1.69E-46 |
| MS.gene052519 | MS.gene31022 | 0.879949 | 8.20E-70 | -1.69E-46 |
| MS.gene052582 | MS.gene31022 | 0.807742 | 4.36E-50 | -1.69E-46 |
| MS.gene052584 | MS.gene31022 | 0.832465 | 9.31E-56 | -1.69E-46 |
| MS.gene052611 | MS.gene31022 | 0.810734 | 9.95E-51 | -1.69E-46 |
| MS.gene052773 | MS.gene31022 | 0.825354 | 4.91E-54 | -1.69E-46 |
| MS.gene052863 | MS.gene31022 | 0.853574 | 2.18E-61 | -1.69E-46 |
| MS.gene053008 | MS.gene31022 | 0.810534 | 1.10E-50 | -1.69E-46 |
| MS.gene053145 | MS.gene31022 | 0.841347 | 5.02E-58 | -1.69E-46 |
| MS.gene053146 | MS.gene31022 | 0.816953 | 4.24E-52 | -1.69E-46 |
| MS.gene053202 | MS.gene31022 | 0.830141 | 3.47E-55 | -1.69E-46 |
| MS.gene053226 | MS.gene31022 | 0.862688 | 4.25E-64 | -1.69E-46 |
| MS.gene05415 | MS.gene31022 | 0.818064 | 2.38E-52 | -1.69E-46 |
| MS.gene05423 | MS.gene31022 | 0.824325 | 8.58E-54 | -1.69E-46 |
| MS.gene054559 | MS.gene31022 | 0.802728 | 4.89E-49 | -1.69E-46 |
| MS.gene054582 | MS.gene31022 | 0.822095 | 2.84E-53 | -1.69E-46 |
| MS.gene05458 | MS.gene31022 | 0.81202 | 5.23E-51 | -1.69E-46 |
| MS.gene054651 | MS.gene31022 | 0.85683 | 2.47E-62 | -1.69E-46 |
| MS.gene054775 | MS.gene31022 | 0.831309 | 1.80E-55 | -1.69E-46 |
| MS.gene054991 | MS.gene31022 | 0.801556 | 8.52E-49 | -1.69E-46 |
| MS.gene055166 | MS.gene31022 | 0.801614 | 8.29E-49 | -1.69E-46 |
| MS.gene055227 | MS.gene31022 | 0.808178 | 3.52E-50 | -1.69E-46 |
| MS.gene055513 | MS.gene31022 | 0.807229 | 5.60E-50 | -1.69E-46 |
| MS.gene055586 | MS.gene31022 | 0.80156 | 8.50E-49 | -1.69E-46 |
| MS.gene055589 | MS.gene31022 | 0.819755 | 9.83E-53 | -1.69E-46 |
| MS.gene055694 | MS.gene31022 | 0.80256 | 5.30E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene31022 | 0.865673 | 4.98E-65 | -1.69E-46 |
| MS.gene056050 | MS.gene31022 | 0.863664 | 2.12E-64 | -1.69E-46 |
| MS.gene056174 | MS.gene31022 | 0.805699 | 1.18E-49 | -1.69E-46 |
| MS.gene056366 | MS.gene31022 | 0.856098 | 4.05E-62 | -1.69E-46 |
| MS.gene056595 | MS.gene31022 | 0.835408 | 1.71E-56 | -1.69E-46 |
| MS.gene056699 | MS.gene31022 | 0.80859 | 2.87E-50 | -1.69E-46 |
| MS.gene057026 | MS.gene31022 | 0.803313 | 3.70E-49 | -1.69E-46 |
| MS.gene057208 | MS.gene31022 | 0.857109 | 2.04E-62 | -1.69E-46 |
| MS.gene057444 | MS.gene31022 | 0.832244 | 1.06E-55 | -1.69E-46 |
| MS.gene057855 | MS.gene31022 | 0.837782 | 4.24E-57 | -1.69E-46 |
| MS.gene057915 | MS.gene31022 | 0.815084 | 1.11E-51 | -1.69E-46 |
| MS.gene058009 | MS.gene31022 | 0.811321 | 7.42E-51 | -1.69E-46 |
| MS.gene058037 | MS.gene31022 | 0.810748 | 9.88E-51 | -1.69E-46 |
| MS.gene058573 | MS.gene31022 | 0.803045 | 4.20E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene31022 | 0.863825 | 1.89E-64 | -1.69E-46 |
| MS.gene058783 | MS.gene31022 | 0.840847 | 6.79E-58 | -1.69E-46 |
| MS.gene058979 | MS.gene31022 | 0.848273 | 6.81E-60 | -1.69E-46 |
| MS.gene059272 | MS.gene31022 | 0.813115 | 3.01E-51 | -1.69E-46 |
| MS.gene059625 | MS.gene31022 | 0.802092 | 6.61E-49 | -1.69E-46 |
| MS.gene059842 | MS.gene31022 | 0.817863 | 2.64E-52 | -1.69E-46 |
| MS.gene05985 | MS.gene31022 | -0.809715 | 1.65E-50 | -1.69E-46 |
| MS.gene059935 | MS.gene31022 | 0.81293 | 3.31E-51 | -1.69E-46 |
| MS.gene060348 | MS.gene31022 | 0.833648 | 4.73E-56 | -1.69E-46 |
| MS.gene060352 | MS.gene31022 | 0.861247 | 1.17E-63 | -1.69E-46 |
| MS.gene060365 | MS.gene31022 | 0.80716 | 5.79E-50 | -1.69E-46 |
| MS.gene060572 | MS.gene31022 | 0.818083 | 2.36E-52 | -1.69E-46 |
| MS.gene060935 | MS.gene31022 | 0.831423 | 1.68E-55 | -1.69E-46 |
| MS.gene060937 | MS.gene31022 | 0.813243 | 2.83E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene31022 | MS.gene008393 | PPI |
| MS.gene049629 | MS.gene31022 | PPI |
| MS.gene035805 | MS.gene31022 | PPI |
| MS.gene05085 | MS.gene31022 | PPI |
| MS.gene31022 | MS.gene064542 | PPI |
| MS.gene31022 | MS.gene73119 | PPI |
| MS.gene31022 | MS.gene55683 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31022.t1 | MTR_3g095230 | 98.741 | 397 | 5 | 0 | 1 | 397 | 191 | 587 | 0.0 | 829 |
| MS.gene31022.t1 | MTR_3g095230 | 98.701 | 385 | 5 | 0 | 1 | 385 | 191 | 575 | 0.0 | 805 |
| MS.gene31022.t1 | MTR_8g092550 | 83.838 | 396 | 55 | 3 | 2 | 396 | 179 | 566 | 0.0 | 691 |
| MS.gene31022.t1 | MTR_4g031680 | 21.519 | 395 | 219 | 14 | 22 | 389 | 237 | 567 | 1.60e-14 | 75.5 |
| MS.gene31022.t1 | MTR_4g104470 | 27.027 | 185 | 122 | 5 | 19 | 201 | 117 | 290 | 8.62e-13 | 68.9 |
| MS.gene31022.t1 | MTR_3g065190 | 29.570 | 186 | 108 | 7 | 21 | 201 | 20 | 187 | 1.08e-12 | 69.3 |
| MS.gene31022.t1 | MTR_3g084040 | 37.975 | 79 | 48 | 1 | 128 | 206 | 37 | 114 | 3.66e-12 | 63.9 |
| MS.gene31022.t1 | MTR_7g106440 | 24.519 | 208 | 140 | 5 | 9 | 204 | 87 | 289 | 6.33e-12 | 66.6 |
| MS.gene31022.t1 | MTR_1g064230 | 28.421 | 190 | 123 | 6 | 23 | 201 | 83 | 270 | 7.40e-12 | 65.9 |
| MS.gene31022.t1 | MTR_4g122650 | 28.736 | 174 | 103 | 5 | 27 | 195 | 90 | 247 | 1.53e-11 | 66.6 |
| MS.gene31022.t1 | MTR_5g097580 | 26.111 | 180 | 118 | 4 | 21 | 191 | 2 | 175 | 5.15e-11 | 64.7 |
| MS.gene31022.t1 | MTR_4g074930 | 28.205 | 156 | 104 | 5 | 25 | 175 | 341 | 493 | 5.97e-11 | 64.7 |
| MS.gene31022.t1 | MTR_4g074930 | 28.205 | 156 | 104 | 5 | 25 | 175 | 329 | 481 | 6.05e-11 | 64.7 |
| MS.gene31022.t1 | MTR_5g097580 | 26.111 | 180 | 118 | 4 | 21 | 191 | 2 | 175 | 6.36e-11 | 64.3 |
| MS.gene31022.t1 | MTR_1g115375 | 23.429 | 175 | 122 | 3 | 27 | 201 | 222 | 384 | 7.11e-11 | 63.9 |
| MS.gene31022.t1 | MTR_4g074930 | 28.205 | 156 | 104 | 5 | 25 | 175 | 364 | 516 | 7.68e-11 | 64.3 |
| MS.gene31022.t1 | MTR_4g074930 | 28.205 | 156 | 104 | 5 | 25 | 175 | 376 | 528 | 8.04e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31022.t1 | AT5G09880 | 74.000 | 400 | 77 | 8 | 2 | 394 | 147 | 526 | 0.0 | 553 |
| MS.gene31022.t1 | AT2G16940 | 63.728 | 397 | 134 | 6 | 5 | 393 | 20 | 414 | 1.13e-167 | 476 |
| MS.gene31022.t1 | AT2G16940 | 63.728 | 397 | 134 | 6 | 5 | 393 | 20 | 414 | 1.13e-167 | 476 |
| MS.gene31022.t1 | AT2G16940 | 63.476 | 397 | 135 | 6 | 5 | 393 | 210 | 604 | 8.31e-164 | 473 |
| MS.gene31022.t1 | AT2G16940 | 63.590 | 390 | 133 | 5 | 11 | 393 | 168 | 555 | 1.18e-163 | 471 |
| MS.gene31022.t1 | AT2G16940 | 61.975 | 405 | 135 | 7 | 6 | 393 | 191 | 593 | 2.89e-160 | 464 |
| MS.gene31022.t1 | AT1G48920 | 28.070 | 171 | 115 | 3 | 25 | 189 | 297 | 465 | 1.02e-14 | 76.3 |
| MS.gene31022.t1 | AT4G16280 | 30.460 | 174 | 100 | 5 | 27 | 195 | 47 | 204 | 4.35e-13 | 71.2 |
| MS.gene31022.t1 | AT4G16280 | 30.460 | 174 | 100 | 5 | 27 | 195 | 122 | 279 | 5.74e-13 | 70.9 |
| MS.gene31022.t1 | AT4G16280 | 30.460 | 174 | 100 | 5 | 27 | 195 | 122 | 279 | 6.12e-13 | 70.9 |
| MS.gene31022.t1 | AT3G18610 | 32.692 | 156 | 92 | 5 | 25 | 175 | 324 | 471 | 7.63e-13 | 70.5 |
| MS.gene31022.t1 | AT3G18610 | 32.692 | 156 | 92 | 5 | 25 | 175 | 354 | 501 | 9.62e-13 | 70.1 |
| MS.gene31022.t1 | AT3G18610 | 32.692 | 156 | 92 | 5 | 25 | 175 | 384 | 531 | 9.83e-13 | 70.1 |
| MS.gene31022.t1 | AT5G54900 | 29.143 | 175 | 101 | 6 | 34 | 201 | 170 | 328 | 5.61e-12 | 67.4 |
| MS.gene31022.t1 | AT3G07810 | 27.778 | 180 | 117 | 4 | 21 | 191 | 2 | 177 | 9.16e-12 | 67.0 |
| MS.gene31022.t1 | AT3G07810 | 27.778 | 180 | 117 | 4 | 21 | 191 | 2 | 177 | 9.56e-12 | 67.0 |
| MS.gene31022.t1 | AT2G37220 | 41.250 | 80 | 45 | 2 | 124 | 202 | 88 | 166 | 1.34e-11 | 65.1 |
| MS.gene31022.t1 | AT3G52380 | 24.000 | 200 | 131 | 5 | 11 | 201 | 106 | 293 | 1.78e-11 | 65.5 |
| MS.gene31022.t1 | AT4G34110 | 27.976 | 168 | 103 | 5 | 26 | 191 | 37 | 188 | 2.94e-11 | 65.5 |
| MS.gene31022.t1 | AT2G18510 | 29.032 | 186 | 109 | 7 | 21 | 201 | 20 | 187 | 3.50e-11 | 64.7 |
| MS.gene31022.t1 | AT4G27000 | 26.087 | 184 | 127 | 4 | 21 | 201 | 169 | 346 | 3.99e-11 | 64.7 |
| MS.gene31022.t1 | AT2G47310 | 31.548 | 168 | 94 | 6 | 36 | 195 | 121 | 275 | 6.46e-11 | 64.3 |
| MS.gene31022.t1 | AT1G22760 | 29.545 | 176 | 105 | 6 | 18 | 191 | 42 | 200 | 7.66e-11 | 64.3 |
Find 118 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCCTTTCTGTAGCCTTTA+AGG | 0.079065 | 3.3:-79032287 | None:intergenic |
| ACAGTTCTTTGATCCCTTTC+TGG | 0.126170 | 3.3:-79032137 | None:intergenic |
| ATGTGAATTGCAGGAGATTT+AGG | 0.155732 | 3.3:+79032081 | MS.gene31022:intron |
| ATAATTACAGATGCCCTTAA+AGG | 0.230539 | 3.3:+79032273 | MS.gene31022:intron |
| ACTGGACATTGCAAGGGTTT+TGG | 0.231301 | 3.3:+79034163 | MS.gene31022:CDS |
| GAAGAAGAGTGTTCTAAATA+TGG | 0.235539 | 3.3:+79035731 | MS.gene31022:CDS |
| CAGCCTTGGCATGCTCTATA+TGG | 0.253974 | 3.3:-79034288 | None:intergenic |
| CCAGAGTTTAAATGGAAAAT+TGG | 0.255637 | 3.3:+79034312 | MS.gene31022:CDS |
| TGTGAATTGCAGGAGATTTA+GGG | 0.295766 | 3.3:+79032082 | MS.gene31022:intron |
| GAGTATGAAGCCAAGTTTAA+AGG | 0.304638 | 3.3:+79036800 | MS.gene31022:CDS |
| TTCCGACAGGTTCGGCCACT+TGG | 0.305919 | 3.3:-79035535 | None:intergenic |
| AAGGCTGCCCAGAGTTTAAA+TGG | 0.307074 | 3.3:+79034304 | MS.gene31022:CDS |
| CTTCAACAGCAAACACTTGC+TGG | 0.319088 | 3.3:-79035561 | None:intergenic |
| TCCCTTTCTGTAGCCTTTAA+GGG | 0.338234 | 3.3:-79032286 | None:intergenic |
| GCATAAGCAATGCTCTTGAT+TGG | 0.351502 | 3.3:-79035277 | None:intergenic |
| CTCTCTGGCCAACTTCTTCT+AGG | 0.365937 | 3.3:+79033677 | MS.gene31022:CDS |
| AATGGAAAATTGGAAATTGC+TGG | 0.369256 | 3.3:+79034322 | MS.gene31022:CDS |
| CCGGCTATTAGTTTGCCTAT+TGG | 0.375879 | 3.3:+79035440 | MS.gene31022:CDS |
| CCAATGGCAATTGCCCTCTC+TGG | 0.397227 | 3.3:+79033662 | MS.gene31022:CDS |
| AGTATGAAGCCAAGTTTAAA+GGG | 0.404087 | 3.3:+79036801 | MS.gene31022:CDS |
| TTGATGTCTAGATCAAAATC+TGG | 0.408142 | 3.3:-79035698 | None:intergenic |
| TCCCTTTCTGGATCTGCCTC+AGG | 0.411587 | 3.3:-79032125 | None:intergenic |
| TATGAATTCTTCTCAAAAGC+TGG | 0.417795 | 3.3:+79032313 | MS.gene31022:CDS |
| AGTTTGCCTATTGGTAATCC+TGG | 0.423121 | 3.3:+79035449 | MS.gene31022:CDS |
| AGCATTGGTTTACCCATGAA+TGG | 0.423759 | 3.3:+79035401 | MS.gene31022:intron |
| TTGTTTGTTGCAGCAACCTC+AGG | 0.424111 | 3.3:+79036778 | MS.gene31022:intron |
| TCATCTGTAGCAGATCATAT+TGG | 0.430584 | 3.3:+79034457 | MS.gene31022:CDS |
| CTTCCACTTGACCTGGAGAC+TGG | 0.437956 | 3.3:+79034145 | MS.gene31022:CDS |
| TCAAAGTTCCCCTTTAAACT+TGG | 0.443540 | 3.3:-79036810 | None:intergenic |
| AGCAGGAGCCAACCCATTCA+TGG | 0.450402 | 3.3:-79035414 | None:intergenic |
| GCTGGTGTGGTAGGACCATA+TGG | 0.452033 | 3.3:+79033770 | MS.gene31022:CDS |
| ATCAAGATACCTCTCTCAAC+TGG | 0.453887 | 3.3:-79033847 | None:intergenic |
| TTTCTGTCCACGGCTCCATA+TGG | 0.456788 | 3.3:-79033785 | None:intergenic |
| AAACTAATAGCCGGCTGAGC+AGG | 0.458460 | 3.3:-79035431 | None:intergenic |
| GTCTAGATCAAAATCTGGTT+CGG | 0.461080 | 3.3:-79035693 | None:intergenic |
| TTCAACAGCAAACACTTGCT+GGG | 0.469075 | 3.3:-79035560 | None:intergenic |
| ATTAATCCAGGATTACCAAT+AGG | 0.471256 | 3.3:-79035455 | None:intergenic |
| TCAAGACGATCTAAAGGAGT+TGG | 0.473620 | 3.3:+79032773 | MS.gene31022:CDS |
| AGCATTGCTTATGCAGAAGC+TGG | 0.475098 | 3.3:+79035286 | MS.gene31022:CDS |
| TCCTACCACACCAGCAGCTC+CGG | 0.476293 | 3.3:-79033762 | None:intergenic |
| CATAAGCAATGCTCTTGATT+GGG | 0.481044 | 3.3:-79035276 | None:intergenic |
| AGCCTTGGCATGCTCTATAT+GGG | 0.485503 | 3.3:-79034287 | None:intergenic |
| AAGAAGAGTGTTCTAAATAT+GGG | 0.487396 | 3.3:+79035732 | MS.gene31022:CDS |
| TGGGTTGGCTCCTGCTCAGC+CGG | 0.490277 | 3.3:+79035421 | MS.gene31022:CDS |
| CCTTGCAATGTCCAGTCTCC+AGG | 0.490770 | 3.3:-79034156 | None:intergenic |
| CCTGGAGACTGGACATTGCA+AGG | 0.494067 | 3.3:+79034156 | MS.gene31022:CDS |
| CCAGAGAGGGCAATTGCCAT+TGG | 0.495102 | 3.3:-79033662 | None:intergenic |
| TGTGTATTTGATGTTTGAAA+CGG | 0.496577 | 3.3:+79035877 | MS.gene31022:CDS |
| TGATGACGATGAAGGTGGAT+TGG | 0.497042 | 3.3:+79034513 | MS.gene31022:CDS |
| TCTTCTAGGACAACCTGTAA+TGG | 0.497742 | 3.3:+79033691 | MS.gene31022:CDS |
| GAGAGATGTTCGTCTGATCA+TGG | 0.499359 | 3.3:+79032742 | MS.gene31022:CDS |
| CCAGGTGCAGGTATTAATCC+AGG | 0.506314 | 3.3:-79035482 | None:intergenic |
| AATCCAGGATGTATTAATCC+AGG | 0.508415 | 3.3:-79035467 | None:intergenic |
| CAAGACGATCTAAAGGAGTT+GGG | 0.512572 | 3.3:+79032774 | MS.gene31022:CDS |
| GGCCAGCAAATTAACCTGAT+AGG | 0.512692 | 3.3:-79032165 | None:intergenic |
| ATGCAGAAGCTGGATCGCTC+TGG | 0.513419 | 3.3:+79035296 | MS.gene31022:CDS |
| ATTTAAACTCTGGGCAGCCT+TGG | 0.515586 | 3.3:-79034302 | None:intergenic |
| TGGGTAGGCATAATTTGAGT+TGG | 0.515917 | 3.3:-79035515 | None:intergenic |
| GCCCTTAAAGGCTACAGAAA+GGG | 0.516293 | 3.3:+79032285 | MS.gene31022:CDS |
| TTAATCCTGACCTCGGAGGT+TGG | 0.519617 | 3.3:-79035596 | None:intergenic |
| CGTGGACAGAAAACTGTATG+TGG | 0.520432 | 3.3:+79033796 | MS.gene31022:CDS |
| TAGTAGTATTAGATTGAACT+AGG | 0.523105 | 3.3:-79033739 | None:intergenic |
| TGAGCCATTTGGTATTGTAG+AGG | 0.528539 | 3.3:+79034114 | MS.gene31022:CDS |
| TTTGTATACAGAAATAGTGC+AGG | 0.531655 | 3.3:+79035851 | MS.gene31022:intron |
| TGGTTTACCCATGAATGGGT+TGG | 0.532788 | 3.3:+79035406 | MS.gene31022:CDS |
| TAGAAGAAGTTGGCCAGAGA+GGG | 0.535398 | 3.3:-79033675 | None:intergenic |
| AATTGCTGGCAGAACTATCA+AGG | 0.535697 | 3.3:+79034336 | MS.gene31022:CDS |
| CAGGTTGTCCTAGAAGAAGT+TGG | 0.538721 | 3.3:-79033685 | None:intergenic |
| AATCCTGGATTAATACATCC+TGG | 0.538804 | 3.3:+79035464 | MS.gene31022:CDS |
| GCATTGGTTTACCCATGAAT+GGG | 0.543521 | 3.3:+79035402 | MS.gene31022:intron |
| AGGAACTCAAGACGATCTAA+AGG | 0.546738 | 3.3:+79032767 | MS.gene31022:CDS |
| AGCCTGAGGCAGATCCAGAA+AGG | 0.553950 | 3.3:+79032123 | MS.gene31022:CDS |
| GGTAGAGCTAGTCCAGGTGC+AGG | 0.554274 | 3.3:-79035494 | None:intergenic |
| TCCGACAGGTTCGGCCACTT+GGG | 0.555085 | 3.3:-79035534 | None:intergenic |
| GCCTGAGGCAGATCCAGAAA+GGG | 0.557148 | 3.3:+79032124 | MS.gene31022:CDS |
| ACAGGTTCGGCCACTTGGGT+AGG | 0.558658 | 3.3:-79035530 | None:intergenic |
| AATACTACTACCGGAGCTGC+TGG | 0.559154 | 3.3:+79033752 | MS.gene31022:CDS |
| CTCAGCGTGCAATGCACATG+AGG | 0.559984 | 3.3:+79035918 | MS.gene31022:CDS |
| GTTCAATCTAATACTACTAC+CGG | 0.564360 | 3.3:+79033743 | MS.gene31022:CDS |
| TGCCCTTAAAGGCTACAGAA+AGG | 0.565916 | 3.3:+79032284 | MS.gene31022:CDS |
| ATTCTTCTCAAAAGCTGGCA+AGG | 0.568033 | 3.3:+79032318 | MS.gene31022:CDS |
| CCTGGATTAATACCTGCACC+TGG | 0.569224 | 3.3:+79035482 | MS.gene31022:CDS |
| TGATGCAATGTCGGTGCCAA+TGG | 0.571085 | 3.3:+79033646 | MS.gene31022:CDS |
| GAAAGAAACGGTCGAGCCTG+AGG | 0.571800 | 3.3:+79032109 | MS.gene31022:CDS |
| TCTCAGTCATATTGAAGTGA+AGG | 0.572231 | 3.3:-79033823 | None:intergenic |
| TGTGCAACTTCCACTTGACC+TGG | 0.573920 | 3.3:+79034138 | MS.gene31022:CDS |
| ACAACCTCTACAATACCAAA+TGG | 0.575084 | 3.3:-79034118 | None:intergenic |
| TGTCCAGTCTCCAGGTCAAG+TGG | 0.578083 | 3.3:-79034148 | None:intergenic |
| CCAATAGGCAAACTAATAGC+CGG | 0.582701 | 3.3:-79035440 | None:intergenic |
| TGAGTTGGTAGAGCTAGTCC+AGG | 0.585279 | 3.3:-79035500 | None:intergenic |
| TGTAATGGTAAAACCTTCTG+AGG | 0.586376 | 3.3:+79033706 | MS.gene31022:CDS |
| AACTTGGCTTCATACTCCTG+AGG | 0.586637 | 3.3:-79036794 | None:intergenic |
| GTATTTGATGTTTGAAACGG+TGG | 0.589307 | 3.3:+79035880 | MS.gene31022:CDS |
| GCAGGAGCCAACCCATTCAT+GGG | 0.590294 | 3.3:-79035413 | None:intergenic |
| TCAACAGCAAACACTTGCTG+GGG | 0.591100 | 3.3:-79035559 | None:intergenic |
| TCAAATTATGCCTACCCAAG+TGG | 0.593026 | 3.3:+79035520 | MS.gene31022:CDS |
| TACTACCGGAGCTGCTGGTG+TGG | 0.594160 | 3.3:+79033757 | MS.gene31022:CDS |
| CTGGAGACTGGACATTGCAA+GGG | 0.601660 | 3.3:+79034157 | MS.gene31022:CDS |
| ACCCAAGTGGCCGAACCTGT+CGG | 0.602654 | 3.3:+79035533 | MS.gene31022:CDS |
| CTAGAAGAAGTTGGCCAGAG+AGG | 0.613365 | 3.3:-79033676 | None:intergenic |
| ATGTTCGTCTGATCATGGAT+AGG | 0.614989 | 3.3:+79032747 | MS.gene31022:CDS |
| GTGGACAGAAAACTGTATGT+GGG | 0.617778 | 3.3:+79033797 | MS.gene31022:CDS |
| AGAGTGTTCTAAATATGGGC+GGG | 0.618240 | 3.3:+79035736 | MS.gene31022:CDS |
| GACTGAGAGCCAGTTGAGAG+AGG | 0.620167 | 3.3:+79033838 | MS.gene31022:CDS |
| ACCGGAGCTGCTGGTGTGGT+AGG | 0.626244 | 3.3:+79033761 | MS.gene31022:CDS |
| ATTTAGGGAGAAGAAAGAAA+CGG | 0.635597 | 3.3:+79032097 | MS.gene31022:CDS |
| AGCGTGCAATGCACATGAGG+TGG | 0.635701 | 3.3:+79035921 | MS.gene31022:CDS |
| ATTTCGAAATGAGAGATAGC+CGG | 0.635859 | 3.3:+79029843 | None:intergenic |
| AATGATTTCAGCTATATACA+TGG | 0.636464 | 3.3:+79035955 | MS.gene31022:CDS |
| ATCGCTCTGGAATTACTGCA+AGG | 0.641131 | 3.3:+79035309 | MS.gene31022:CDS |
| CAACAGCAAACACTTGCTGG+GGG | 0.646295 | 3.3:-79035558 | None:intergenic |
| AAGAGTGTTCTAAATATGGG+CGG | 0.647146 | 3.3:+79035735 | MS.gene31022:CDS |
| TGCCCATATAGAGCATGCCA+AGG | 0.652899 | 3.3:+79034285 | MS.gene31022:CDS |
| GTATGAAGCCAAGTTTAAAG+GGG | 0.671770 | 3.3:+79036802 | MS.gene31022:CDS |
| TGGACAGAAAACTGTATGTG+GGG | 0.675066 | 3.3:+79033798 | MS.gene31022:CDS |
| GGTAGGACCATATGGAGCCG+TGG | 0.677350 | 3.3:+79033778 | MS.gene31022:CDS |
| CCAGTTAATCCTGACCTCGG+AGG | 0.688440 | 3.3:-79035600 | None:intergenic |
| TATGTTTGATCCAACCTCCG+AGG | 0.739787 | 3.3:+79035586 | MS.gene31022:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 79029851 | 79036832 | 79029851 | ID=MS.gene31022 |
| chr3.3 | mRNA | 79029851 | 79036832 | 79029851 | ID=MS.gene31022.t1;Parent=MS.gene31022 |
| chr3.3 | exon | 79029851 | 79029864 | 79029851 | ID=MS.gene31022.t1.exon1;Parent=MS.gene31022.t1 |
| chr3.3 | CDS | 79029851 | 79029864 | 79029851 | ID=cds.MS.gene31022.t1;Parent=MS.gene31022.t1 |
| chr3.3 | exon | 79032094 | 79032172 | 79032094 | ID=MS.gene31022.t1.exon2;Parent=MS.gene31022.t1 |
| chr3.3 | CDS | 79032094 | 79032172 | 79032094 | ID=cds.MS.gene31022.t1;Parent=MS.gene31022.t1 |
| chr3.3 | exon | 79032283 | 79032339 | 79032283 | ID=MS.gene31022.t1.exon3;Parent=MS.gene31022.t1 |
| chr3.3 | CDS | 79032283 | 79032339 | 79032283 | ID=cds.MS.gene31022.t1;Parent=MS.gene31022.t1 |
| chr3.3 | exon | 79032740 | 79032795 | 79032740 | ID=MS.gene31022.t1.exon4;Parent=MS.gene31022.t1 |
| chr3.3 | CDS | 79032740 | 79032795 | 79032740 | ID=cds.MS.gene31022.t1;Parent=MS.gene31022.t1 |
| chr3.3 | exon | 79033631 | 79033859 | 79033631 | ID=MS.gene31022.t1.exon5;Parent=MS.gene31022.t1 |
| chr3.3 | CDS | 79033631 | 79033859 | 79033631 | ID=cds.MS.gene31022.t1;Parent=MS.gene31022.t1 |
| chr3.3 | exon | 79034109 | 79034195 | 79034109 | ID=MS.gene31022.t1.exon6;Parent=MS.gene31022.t1 |
| chr3.3 | CDS | 79034109 | 79034195 | 79034109 | ID=cds.MS.gene31022.t1;Parent=MS.gene31022.t1 |
| chr3.3 | exon | 79034283 | 79034357 | 79034283 | ID=MS.gene31022.t1.exon7;Parent=MS.gene31022.t1 |
| chr3.3 | CDS | 79034283 | 79034357 | 79034283 | ID=cds.MS.gene31022.t1;Parent=MS.gene31022.t1 |
| chr3.3 | exon | 79034454 | 79034534 | 79034454 | ID=MS.gene31022.t1.exon8;Parent=MS.gene31022.t1 |
| chr3.3 | CDS | 79034454 | 79034534 | 79034454 | ID=cds.MS.gene31022.t1;Parent=MS.gene31022.t1 |
| chr3.3 | exon | 79035266 | 79035330 | 79035266 | ID=MS.gene31022.t1.exon9;Parent=MS.gene31022.t1 |
| chr3.3 | CDS | 79035266 | 79035330 | 79035266 | ID=cds.MS.gene31022.t1;Parent=MS.gene31022.t1 |
| chr3.3 | exon | 79035403 | 79035607 | 79035403 | ID=MS.gene31022.t1.exon10;Parent=MS.gene31022.t1 |
| chr3.3 | CDS | 79035403 | 79035607 | 79035403 | ID=cds.MS.gene31022.t1;Parent=MS.gene31022.t1 |
| chr3.3 | exon | 79035692 | 79035780 | 79035692 | ID=MS.gene31022.t1.exon11;Parent=MS.gene31022.t1 |
| chr3.3 | CDS | 79035692 | 79035780 | 79035692 | ID=cds.MS.gene31022.t1;Parent=MS.gene31022.t1 |
| chr3.3 | exon | 79035862 | 79035976 | 79035862 | ID=MS.gene31022.t1.exon12;Parent=MS.gene31022.t1 |
| chr3.3 | CDS | 79035862 | 79035976 | 79035862 | ID=cds.MS.gene31022.t1;Parent=MS.gene31022.t1 |
| chr3.3 | exon | 79036791 | 79036832 | 79036791 | ID=MS.gene31022.t1.exon13;Parent=MS.gene31022.t1 |
| chr3.3 | CDS | 79036791 | 79036832 | 79036791 | ID=cds.MS.gene31022.t1;Parent=MS.gene31022.t1 |
| Gene Sequence |
| Protein sequence |
