AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene058737


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058737.t1 MTR_1g081610 96.259 294 8 1 15 305 32 325 0.0 560
MS.gene058737.t1 MTR_1g103690 88.055 293 32 1 15 304 32 324 5.50e-169 471
MS.gene058737.t1 MTR_5g006340 88.055 293 32 1 15 304 32 324 8.98e-168 469
MS.gene058737.t1 MTR_4g087490 70.345 290 83 1 15 301 71 360 3.07e-150 426
MS.gene058737.t1 MTR_1g081620 73.115 305 74 2 3 304 24 323 1.20e-149 422
MS.gene058737.t1 MTR_1g081625 71.803 305 78 2 3 304 24 323 4.26e-144 409
MS.gene058737.t1 MTR_4g087510 66.897 290 85 2 15 301 70 351 8.22e-141 401
MS.gene058737.t1 MTR_7g078070 62.373 295 104 2 10 301 24 314 3.39e-128 368
MS.gene058737.t1 MTR_7g078070 62.373 295 104 2 10 301 84 374 3.92e-128 370
MS.gene058737.t1 MTR_7g078070 62.989 281 101 1 24 301 1 281 6.01e-126 361
MS.gene058737.t1 MTR_4g087520 71.429 266 73 1 39 301 1 266 1.36e-125 360
MS.gene058737.t1 MTR_7g087110 61.379 290 99 2 15 301 89 368 7.07e-115 336
MS.gene058737.t1 MTR_1g081640 68.797 266 75 2 3 265 24 284 1.58e-113 331
MS.gene058737.t1 MTR_5g095670 28.916 332 174 7 16 287 69 398 1.82e-33 127
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058737.t1 AT4G14880 76.721 305 63 2 3 304 22 321 2.31e-159 447
MS.gene058737.t1 AT4G14880 76.721 305 63 2 3 304 22 321 2.31e-159 447
MS.gene058737.t1 AT4G14880 76.721 305 63 2 3 304 22 321 2.31e-159 447
MS.gene058737.t1 AT4G14880 76.721 305 63 2 3 304 22 321 2.31e-159 447
MS.gene058737.t1 AT4G14880 76.721 305 63 2 3 304 22 321 2.31e-159 447
MS.gene058737.t1 AT3G59760 74.570 291 71 1 14 301 136 426 1.23e-145 416
MS.gene058737.t1 AT3G59760 74.570 291 71 1 14 301 136 426 1.67e-145 416
MS.gene058737.t1 AT2G43750 74.483 290 71 1 15 301 99 388 1.82e-145 415
MS.gene058737.t1 AT2G43750 74.483 290 71 1 15 301 99 388 1.82e-145 415
MS.gene058737.t1 AT3G22460 76.208 269 41 2 39 304 1 249 9.12e-142 400
MS.gene058737.t1 AT3G04940 68.543 302 87 2 3 301 25 321 1.16e-136 390
MS.gene058737.t1 AT3G04940 68.543 302 87 2 3 301 25 321 1.16e-136 390
MS.gene058737.t1 AT5G28020 70.990 293 82 1 15 304 31 323 1.77e-134 384
MS.gene058737.t1 AT5G28020 70.990 293 82 1 15 304 31 323 1.77e-134 384
MS.gene058737.t1 AT5G28020 70.990 293 82 1 15 304 31 323 1.77e-134 384
MS.gene058737.t1 AT5G28020 70.990 293 82 1 15 304 31 323 1.77e-134 384
MS.gene058737.t1 AT5G28020 70.990 293 82 1 15 304 31 323 1.77e-134 384
MS.gene058737.t1 AT3G59760 70.034 297 84 3 14 305 136 432 3.97e-131 380
MS.gene058737.t1 AT5G28030 68.259 293 90 1 15 304 31 323 2.89e-125 361
MS.gene058737.t1 AT5G28030 68.259 293 90 1 15 304 31 323 2.89e-125 361
MS.gene058737.t1 AT5G28030 68.259 293 90 1 15 304 31 323 2.89e-125 361
MS.gene058737.t1 AT5G28030 68.259 293 90 1 15 304 31 323 2.89e-125 361
MS.gene058737.t1 AT3G61440 60.900 289 110 1 16 301 74 362 5.76e-120 349
MS.gene058737.t1 AT3G61440 62.406 266 97 1 39 301 1 266 1.58e-113 329
MS.gene058737.t1 AT3G03630 61.986 292 98 2 15 303 123 404 5.07e-113 333
MS.gene058737.t1 AT3G61440 62.083 240 88 1 65 301 2 241 3.54e-102 299
MS.gene058737.t1 AT5G28020 69.198 237 70 1 71 304 1 237 1.25e-101 298
MS.gene058737.t1 AT3G22460 80.473 169 28 1 3 171 25 188 5.86e-96 281
MS.gene058737.t1 AT3G61440 59.664 238 96 0 16 253 74 311 1.73e-95 285
MS.gene058737.t1 AT5G28030 67.273 220 72 0 15 234 31 250 7.19e-95 281
MS.gene058737.t1 AT1G55880 27.928 333 177 9 16 287 65 395 3.95e-28 112
MS.gene058737.t1 AT1G55880 30.594 219 110 5 16 193 65 282 1.87e-24 101

Find 75 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGTTGATGCCCTTGTTTC+TGG 0.150326 1.1:-14938668 MS.gene058737:CDS
ATAATCCTAACCTTAATATC+AGG 0.274666 1.1:+14938590 None:intergenic
ACTAACACCTTTGGGTTTGC+AGG 0.288673 1.1:+14938816 None:intergenic
AGAACCATTCTTCGCGCTTT+TGG 0.297151 1.1:-14938951 MS.gene058737:CDS
TGGCTTCATTCCCGGTGTTC+TGG 0.319162 1.1:-14937850 MS.gene058737:CDS
AGAGCAAAACCCTGATATTA+AGG 0.326681 1.1:-14938600 MS.gene058737:intron
GGCATTCATGGCAGCTGCTA+AGG 0.329627 1.1:-14939021 MS.gene058737:CDS
ATTGGTGCTGGCTTCATTCC+CGG 0.333399 1.1:-14937858 MS.gene058737:CDS
TGGTATTGGTTTGGCATTCA+TGG 0.343061 1.1:-14939033 MS.gene058737:CDS
GATGCCCTTGTTTCTGGTAT+AGG 0.346426 1.1:-14938662 MS.gene058737:CDS
GGAACCGGAGGTACGGTAAC+AGG 0.406043 1.1:-14938641 MS.gene058737:CDS
CTTGTTTCTGGTATAGGAAC+CGG 0.413375 1.1:-14938656 MS.gene058737:CDS
TAGGTTCACTATGAAACTAC+TGG 0.414969 1.1:-14938719 MS.gene058737:CDS
AAACTTCTTGCATTAAAAGA+AGG 0.415012 1.1:-14937392 MS.gene058737:intron
CCAATACCTTGGATCTTATG+AGG 0.417262 1.1:+14937876 None:intergenic
GGTTTCCCTCCAGACAATAC+TGG 0.417936 1.1:+14938425 None:intergenic
AAACTACTGGACCAGAGATC+TGG 0.427472 1.1:-14938706 MS.gene058737:CDS
GCTCCTTTCATACCTTTAGC+TGG 0.435185 1.1:+14938906 None:intergenic
TGCTGAAGAATGTAAGCATT+GGG 0.439335 1.1:+14938849 None:intergenic
TGGATACACTGGTATTGGTT+TGG 0.440994 1.1:-14939042 MS.gene058737:CDS
ACTAGTGGATACACTGGTAT+TGG 0.448235 1.1:-14939047 MS.gene058737:CDS
GCAAAGAAGCCGGAAAATGC+TGG 0.482832 1.1:-14937227 MS.gene058737:CDS
CTTGAAAGTCCAGTATTGTC+TGG 0.488243 1.1:-14938434 MS.gene058737:CDS
CTCTCAAGACTCATTGAAGC+AGG 0.492620 1.1:+14938975 None:intergenic
GGAGGTACGGTAACAGGTGC+TGG 0.494965 1.1:-14938635 MS.gene058737:CDS
CCAGAGATCTGGAAAAGCTC+TGG 0.501405 1.1:-14938695 MS.gene058737:CDS
TGCGGCAAAGCTAGAAATGA+TGG 0.501879 1.1:-14940032 MS.gene058737:CDS
ATTGCAGATGCTGAGGAGAA+AGG 0.503285 1.1:-14939363 MS.gene058737:CDS
CCTCATAAGATCCAAGGTAT+TGG 0.505205 1.1:-14937876 MS.gene058737:CDS
GTATTGTCTGGAGGGAAACC+TGG 0.505854 1.1:-14938422 MS.gene058737:intron
AATCTTAATTGCAGCGGCTG+CGG 0.507802 1.1:+14937250 None:intergenic
AGTTTCAATAGCTTCTTCGC+TGG 0.508262 1.1:+14937418 None:intergenic
GTTTCAGGTGGGATATCATC+TGG 0.512164 1.1:-14937278 MS.gene058737:intron
TTGCTGAAGAATGTAAGCAT+TGG 0.512878 1.1:+14938848 None:intergenic
AGCACCTGTTACCGTACCTC+CGG 0.515405 1.1:+14938637 None:intergenic
GCATTCATGGCAGCTGCTAA+GGG 0.522984 1.1:-14939020 MS.gene058737:CDS
GTTCTCACTGATCCAGCTAA+AGG 0.528590 1.1:-14938918 MS.gene058737:CDS
AGATAACGCTCTCCAAAGCT+CGG 0.532448 1.1:+14937011 None:intergenic
AAGATCCAAGGTATTGGTGC+TGG 0.533186 1.1:-14937870 MS.gene058737:CDS
ATACCAGTGTATCCACTAGT+AGG 0.533676 1.1:+14939050 None:intergenic
TAATCCTAACCTTAATATCA+GGG 0.533978 1.1:+14938591 None:intergenic
TGAAGCCAGCACCAATACCT+TGG 0.537270 1.1:+14937865 None:intergenic
GGCACCAAAAGCGCGAAGAA+TGG 0.537288 1.1:+14938947 None:intergenic
GAGATCTGGAAAAGCTCTGG+TGG 0.541486 1.1:-14938692 MS.gene058737:CDS
CGGTTCCTATACCAGAAACA+AGG 0.542856 1.1:+14938657 None:intergenic
TATCTCAACCATGTTGTGGA+TGG 0.547082 1.1:-14940072 MS.gene058737:CDS
GATAACGCTCTCCAAAGCTC+GGG 0.550231 1.1:+14937012 None:intergenic
CTTTGCAATCTTAATTGCAG+CGG 0.555528 1.1:+14937244 None:intergenic
TGGTATAGGAACCGGAGGTA+CGG 0.570019 1.1:-14938648 MS.gene058737:CDS
CTTGCTCTAGTGTCAAAGAC+AGG 0.573863 1.1:-14940006 MS.gene058737:intron
AAAGTCCAGTATTGTCTGGA+GGG 0.575979 1.1:-14938430 MS.gene058737:CDS
GATCCAGCTAAAGGTATGAA+AGG 0.584953 1.1:-14938909 MS.gene058737:CDS
GTCCTCATTGAGCCTACTAG+TGG 0.585495 1.1:-14939062 MS.gene058737:CDS
AATTAAGATTGCAAAGAAGC+CGG 0.588073 1.1:-14937237 MS.gene058737:CDS
GAAGGAAAACTAACTTCTTG+CGG 0.588318 1.1:+14939330 None:intergenic
AGTATATCTCAACCATGTTG+TGG 0.590226 1.1:-14940076 MS.gene058737:CDS
AACCATTGCTAAAGATGTCA+CGG 0.593791 1.1:-14940262 None:intergenic
GACAATACTGGACTTTCAAG+TGG 0.596668 1.1:+14938437 None:intergenic
AAGACTCATTGAAGCAGGCA+TGG 0.602785 1.1:+14938980 None:intergenic
GTTTGTGCTTGCACAAATTG+CGG 0.602836 1.1:-14940050 MS.gene058737:CDS
CAAGGCCCTCATAAGATCCA+AGG 0.604638 1.1:-14937882 MS.gene058737:intron
CAATACCTTGGATCTTATGA+GGG 0.606155 1.1:+14937877 None:intergenic
CAAATCAACATCCAGAACAC+CGG 0.607010 1.1:+14937839 None:intergenic
TAGCATGATTGCAGATGCTG+AGG 0.608575 1.1:-14939370 MS.gene058737:CDS
AAATCAACATCCAGAACACC+GGG 0.614142 1.1:+14937840 None:intergenic
GAAAGTCCAGTATTGTCTGG+AGG 0.625339 1.1:-14938431 MS.gene058737:CDS
GAGCCTACTAGTGGATACAC+TGG 0.626296 1.1:-14939053 MS.gene058737:CDS
AGATCTGGAAAAGCTCTGGT+GGG 0.630978 1.1:-14938691 MS.gene058737:CDS
TGAAAATCCTGCAAACCCAA+AGG 0.632579 1.1:-14938823 MS.gene058737:intron
AGCACAAACCATCCACAACA+TGG 0.637323 1.1:+14940064 None:intergenic
CTGTCTTTGACACTAGAGCA+AGG 0.647667 1.1:+14940007 None:intergenic
TGGATCAGTGAGAACTAACT+CGG 0.649731 1.1:+14938926 None:intergenic
GTTTCTGGTATAGGAACCGG+AGG 0.680508 1.1:-14938653 MS.gene058737:CDS
ATCCACTAGTAGGCTCAATG+AGG 0.688514 1.1:+14939060 None:intergenic
GGTTCCTATACCAGAAACAA+GGG 0.692573 1.1:+14938658 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTCTTTTTTTTTTTTTTT+TGG - chr1.1:14937648-14937667 MS.gene058737:intron 10.0%
!! ACTTAAACTTTATTATTGAA+GGG + chr1.1:14939485-14939504 None:intergenic 15.0%
!! GTTGATTATATAAACATATA+TGG + chr1.1:14936972-14936991 None:intergenic 15.0%
!! TAATAGAATATACAAACATT+CGG + chr1.1:14939699-14939718 None:intergenic 15.0%
!! TACTTAAACTTTATTATTGA+AGG + chr1.1:14939486-14939505 None:intergenic 15.0%
!!! ATCATTTTATCTTTTTTGTT+GGG - chr1.1:14937377-14937396 MS.gene058737:intron 15.0%
!!! ATTTCTGAGATTTTTAAAAT+TGG - chr1.1:14937222-14937241 MS.gene058737:CDS 15.0%
!!! CATCACTTTTTTTTTTTTTT+TGG - chr1.1:14936991-14937010 MS.gene058737:CDS 15.0%
!!! TAATAAAACTTTTTTCTTGT+TGG + chr1.1:14939175-14939194 None:intergenic 15.0%
!!! TATCATTTTATCTTTTTTGT+TGG - chr1.1:14937376-14937395 MS.gene058737:intron 15.0%
!! AATAGAAATAAAGGATAAGA+AGG + chr1.1:14938810-14938829 None:intergenic 20.0%
!! AATAGCATATCATTCAAAAA+TGG + chr1.1:14939883-14939902 None:intergenic 20.0%
!! ATTACCTTCTATAAATTTCT+AGG - chr1.1:14938650-14938669 MS.gene058737:CDS 20.0%
!! CACTTTATATAATGATTCTA+AGG + chr1.1:14937294-14937313 None:intergenic 20.0%
!! TAGCAACTAAAAAAACATTA+AGG + chr1.1:14937776-14937795 None:intergenic 20.0%
!! TCATGAATTAAATATCAAGA+AGG + chr1.1:14937889-14937908 None:intergenic 20.0%
!!! AATGATAGAAAGATTGATTT+TGG + chr1.1:14937363-14937382 None:intergenic 20.0%
!!! ATAATGAGATTGATTTCAAT+TGG - chr1.1:14937490-14937509 MS.gene058737:intron 20.0%
!!! ATCTCTTATTTGATAATCAA+TGG + chr1.1:14938071-14938090 None:intergenic 20.0%
!!! ATTTTTCTTGGAAATGAAAA+CGG - chr1.1:14939108-14939127 MS.gene058737:intron 20.0%
!!! ATTTTTTTTCCTTAGCTATA+TGG - chr1.1:14938731-14938750 MS.gene058737:intron 20.0%
!!! TTAACTTGCAATAGAAATAA+AGG + chr1.1:14938819-14938838 None:intergenic 20.0%
!!! TTTTAAATCGTTTACTTAGT+TGG - chr1.1:14938027-14938046 MS.gene058737:intron 20.0%
! AAACTTCTTGCATTAAAAGA+AGG - chr1.1:14939806-14939825 MS.gene058737:intron 25.0%
! AATAAGAGATGAAATTCACA+AGG - chr1.1:14938081-14938100 MS.gene058737:intron 25.0%
! ATAATCCTAACCTTAATATC+AGG + chr1.1:14938611-14938630 None:intergenic 25.0%
! ATAATTCTTTCATTTGATGC+AGG - chr1.1:14937797-14937816 MS.gene058737:intron 25.0%
! ATACTCATAAGTTAACCAAA+TGG + chr1.1:14939525-14939544 None:intergenic 25.0%
! CTACAAAAACACAAAAGTAA+GGG + chr1.1:14939756-14939775 None:intergenic 25.0%
! GATTATGAGATCATTACAAT+AGG - chr1.1:14937528-14937547 MS.gene058737:intron 25.0%
! TAATCCTAACCTTAATATCA+GGG + chr1.1:14938610-14938629 None:intergenic 25.0%
! TATGAAACAGAATTAAGTCA+TGG + chr1.1:14937600-14937619 None:intergenic 25.0%
! TCTACAAAAACACAAAAGTA+AGG + chr1.1:14939757-14939776 None:intergenic 25.0%
! TGAATGACTTATTCTTAATG+CGG + chr1.1:14937976-14937995 None:intergenic 25.0%
!! AACATTCAGAATAGATCTTT+TGG + chr1.1:14937625-14937644 None:intergenic 25.0%
!! CATCATGGAACATATAATTT+TGG - chr1.1:14937551-14937570 MS.gene058737:intron 25.0%
!! GTTTTCATTTCCAAGAAAAA+TGG + chr1.1:14939109-14939128 None:intergenic 25.0%
!! TGATTTCAATTGGTTTAAGT+TGG - chr1.1:14937500-14937519 MS.gene058737:intron 25.0%
!!! ACATTGCTTTGTTATTTGAA+TGG - chr1.1:14939217-14939236 MS.gene058737:intron 25.0%
!!! GTTATTTTTAGAGAATCACT+TGG - chr1.1:14938416-14938435 MS.gene058737:intron 25.0%
!!! TTTTGAAATGTACAGTTGAT+TGG - chr1.1:14937087-14937106 MS.gene058737:intron 25.0%
AAAAAATGTAGCTGTCCATT+TGG - chr1.1:14939507-14939526 MS.gene058737:intron 30.0%
AAAACCCTGATATTAAGGTT+AGG - chr1.1:14938603-14938622 MS.gene058737:CDS 30.0%
AAAATATCATGCGTTTGTCA+GGG + chr1.1:14939289-14939308 None:intergenic 30.0%
AACTCTAATATGGCCAATTA+TGG + chr1.1:14940099-14940118 None:intergenic 30.0%
AATTAAGATTGCAAAGAAGC+CGG - chr1.1:14939961-14939980 MS.gene058737:intron 30.0%
ACTTACTATTCATTCATCGT+GGG - chr1.1:14939609-14939628 MS.gene058737:intron 30.0%
AGAAAATCTAGAGAATCGTA+GGG + chr1.1:14937426-14937445 None:intergenic 30.0%
ATAACAAAGCAAAAGTGAGA+AGG + chr1.1:14939150-14939169 None:intergenic 30.0%
CACTTATTCGATACATATAC+AGG - chr1.1:14940156-14940175 MS.gene058737:intron 30.0%
CATGAGTACTTGTAAAATCA+TGG - chr1.1:14939023-14939042 MS.gene058737:CDS 30.0%
CATGCCTAGAAATTTATAGA+AGG + chr1.1:14938657-14938676 None:intergenic 30.0%
GAATGAGAGAAACTCTAATA+TGG + chr1.1:14940109-14940128 None:intergenic 30.0%
GACAAATGTTAGTAAGTTAG+TGG - chr1.1:14937673-14937692 MS.gene058737:intron 30.0%
TTCATAGTGAACCTAAAAGT+AGG + chr1.1:14938474-14938493 None:intergenic 30.0%
TTGATGAAGTAATCCAAGTA+AGG - chr1.1:14939383-14939402 MS.gene058737:intron 30.0%
TTTACAAGTACTCATGAAGT+GGG + chr1.1:14939019-14939038 None:intergenic 30.0%
! ATGCTCAAAGATCATGTTTT+CGG + chr1.1:14940248-14940267 None:intergenic 30.0%
! ATTATTGAAGGGAGTACAAT+TGG + chr1.1:14939474-14939493 None:intergenic 30.0%
! CATGATATTTTCCATGTACA+AGG - chr1.1:14939298-14939317 MS.gene058737:intron 30.0%
! TTTTACAAGTACTCATGAAG+TGG + chr1.1:14939020-14939039 None:intergenic 30.0%
!! CAAGTCAATACCATTTTTCT+TGG - chr1.1:14939096-14939115 MS.gene058737:intron 30.0%
!! TTTTTAGAGAATCACTTGGT+TGG - chr1.1:14938420-14938439 MS.gene058737:intron 30.0%
!!! AGTGGTTACATTAGTTTTCA+GGG - chr1.1:14937691-14937710 MS.gene058737:intron 30.0%
!!! TAGTGGTTACATTAGTTTTC+AGG - chr1.1:14937690-14937709 MS.gene058737:intron 30.0%
!!! TTTACTTAGTTGGTTTTGTG+TGG - chr1.1:14938037-14938056 MS.gene058737:intron 30.0%
AAATATCATGCGTTTGTCAG+GGG + chr1.1:14939288-14939307 None:intergenic 35.0%
ACATGGTTGAGATATACTAG+TGG + chr1.1:14937120-14937139 None:intergenic 35.0%
ACTAGTGCATATAATCATCG+AGG + chr1.1:14938986-14939005 None:intergenic 35.0%
AGAGCAAAACCCTGATATTA+AGG - chr1.1:14938598-14938617 MS.gene058737:intron 35.0%
AGTATATCTCAACCATGTTG+TGG - chr1.1:14937122-14937141 MS.gene058737:intron 35.0%
ATAGTGAACCTAAAAGTAGG+CGG + chr1.1:14938471-14938490 None:intergenic 35.0%
ATATCAACTGAATCATGTGC+TGG - chr1.1:14940066-14940085 MS.gene058737:CDS 35.0%
ATTGACACAACTAACACCTT+TGG + chr1.1:14938394-14938413 None:intergenic 35.0%
CAAAAGATTCATGCCTTACT+TGG + chr1.1:14939399-14939418 None:intergenic 35.0%
CAATACCTTGGATCTTATGA+GGG + chr1.1:14939324-14939343 None:intergenic 35.0%
CACTTACTATTCATTCATCG+TGG - chr1.1:14939608-14939627 MS.gene058737:intron 35.0%
CAGAAAATCTAGAGAATCGT+AGG + chr1.1:14937427-14937446 None:intergenic 35.0%
CGCTATAGTCCATAAATAAC+TGG - chr1.1:14939727-14939746 MS.gene058737:intron 35.0%
CTTACTATTCATTCATCGTG+GGG - chr1.1:14939610-14939629 MS.gene058737:intron 35.0%
CTTTGCAATCTTAATTGCAG+CGG + chr1.1:14939957-14939976 None:intergenic 35.0%
GAAAATATCATGCGTTTGTC+AGG + chr1.1:14939290-14939309 None:intergenic 35.0%
GAAGGAAAACTAACTTCTTG+CGG + chr1.1:14937871-14937890 None:intergenic 35.0%
GATCATTACAATAGGCATCA+TGG - chr1.1:14937536-14937555 MS.gene058737:intron 35.0%
TAAGGGTTGCCAGTTATTTA+TGG + chr1.1:14939739-14939758 None:intergenic 35.0%
TAGGTTCACTATGAAACTAC+TGG - chr1.1:14938479-14938498 MS.gene058737:intron 35.0%
TCTTTCATTTGATGCAGGAT+AGG - chr1.1:14937802-14937821 MS.gene058737:intron 35.0%
TGCATTAAAAGAAGGTTTGC+TGG - chr1.1:14939814-14939833 MS.gene058737:intron 35.0%
TGCTGAAGAATGTAAGCATT+GGG + chr1.1:14938352-14938371 None:intergenic 35.0%
TGGTCAAAAGAGTAAGTAGA+AGG + chr1.1:14937943-14937962 None:intergenic 35.0%
TTGACACAACTAACACCTTT+GGG + chr1.1:14938393-14938412 None:intergenic 35.0%
TTGCTGAAGAATGTAAGCAT+TGG + chr1.1:14938353-14938372 None:intergenic 35.0%
! AAAGTATCACCTTCACCATT+CGG - chr1.1:14938881-14938900 MS.gene058737:CDS 35.0%
! ACTTTTCCTCAATGTGCATT+AGG + chr1.1:14938866-14938885 None:intergenic 35.0%
! ATGAGTTTTCCAGCATTTTC+CGG + chr1.1:14939983-14940002 None:intergenic 35.0%
! CTTTTCCTCAATGTGCATTA+GGG + chr1.1:14938865-14938884 None:intergenic 35.0%
! TTTTCCTTAGCTATATGGTG+TGG - chr1.1:14938736-14938755 MS.gene058737:intron 35.0%
!! AGTTTTCAGGGATTTCACTT+TGG - chr1.1:14937703-14937722 MS.gene058737:intron 35.0%
AAAACATTAAGGTCCCACGT+AGG + chr1.1:14937765-14937784 None:intergenic 40.0%
AAAGTCCAGTATTGTCTGGA+GGG - chr1.1:14938768-14938787 MS.gene058737:intron 40.0%
AAATCAACATCCAGAACACC+GGG + chr1.1:14939361-14939380 None:intergenic 40.0%
AAGTATCACCTTCACCATTC+GGG - chr1.1:14938882-14938901 MS.gene058737:CDS 40.0%
AAGTTCCCTAATGCACATTG+AGG - chr1.1:14938857-14938876 MS.gene058737:CDS 40.0%
AGGGGAATGATACATAGAAG+AGG + chr1.1:14939270-14939289 None:intergenic 40.0%
AGTTTCAATAGCTTCTTCGC+TGG + chr1.1:14939783-14939802 None:intergenic 40.0%
ATACCAGTGTATCCACTAGT+AGG + chr1.1:14938151-14938170 None:intergenic 40.0%
CAAATCAACATCCAGAACAC+CGG + chr1.1:14939362-14939381 None:intergenic 40.0%
CATGGATTCTGATTTCTCTG+TGG - chr1.1:14939041-14939060 MS.gene058737:CDS 40.0%
CCAATACCTTGGATCTTATG+AGG + chr1.1:14939325-14939344 None:intergenic 40.0%
CCTCATAAGATCCAAGGTAT+TGG - chr1.1:14939322-14939341 MS.gene058737:intron 40.0%
CTTAATGCGGCTACTAAAGT+TGG + chr1.1:14937963-14937982 None:intergenic 40.0%
CTTGAAAGTCCAGTATTGTC+TGG - chr1.1:14938764-14938783 MS.gene058737:intron 40.0%
GACAATACTGGACTTTCAAG+TGG + chr1.1:14938764-14938783 None:intergenic 40.0%
GATAAGAAGGAAAACTCACC+AGG + chr1.1:14938797-14938816 None:intergenic 40.0%
GGGGAATGATACATAGAAGA+GGG + chr1.1:14939269-14939288 None:intergenic 40.0%
GGTTCCTATACCAGAAACAA+GGG + chr1.1:14938543-14938562 None:intergenic 40.0%
GTGCGTGAATTTGCATAATG+TGG + chr1.1:14939591-14939610 None:intergenic 40.0%
GTTTGTGCTTGCACAAATTG+CGG - chr1.1:14937148-14937167 MS.gene058737:intron 40.0%
TACCACTGAACTTGTGTTTC+AGG - chr1.1:14939905-14939924 MS.gene058737:intron 40.0%
TATCTCAACCATGTTGTGGA+TGG - chr1.1:14937126-14937145 MS.gene058737:intron 40.0%
TGAAAATCCTGCAAACCCAA+AGG - chr1.1:14938375-14938394 MS.gene058737:intron 40.0%
TGACAGTTTATTTGCCTCGA+TGG - chr1.1:14938925-14938944 MS.gene058737:CDS 40.0%
TGGATCAGTGAGAACTAACT+CGG + chr1.1:14938275-14938294 None:intergenic 40.0%
TTTGCACATTTGATCCATCG+AGG + chr1.1:14938942-14938961 None:intergenic 40.0%
! ACTAGTGGATACACTGGTAT+TGG - chr1.1:14938151-14938170 MS.gene058737:intron 40.0%
! ACTGAACTTGTGTTTCAGGT+GGG - chr1.1:14939909-14939928 MS.gene058737:intron 40.0%
! GATCCAGCTAAAGGTATGAA+AGG - chr1.1:14938289-14938308 MS.gene058737:intron 40.0%
!! ATTCTCTTCCGCCTACTTTT+AGG - chr1.1:14938460-14938479 MS.gene058737:intron 40.0%
!! CTTGTTTCTGGTATAGGAAC+CGG - chr1.1:14938542-14938561 MS.gene058737:intron 40.0%
!! TGGATACACTGGTATTGGTT+TGG - chr1.1:14938156-14938175 MS.gene058737:intron 40.0%
!! TGGTATTGGTTTGGCATTCA+TGG - chr1.1:14938165-14938184 MS.gene058737:intron 40.0%
!!! GTCTTTTTTCCCTCTCTTCT+TGG - chr1.1:14939560-14939579 MS.gene058737:intron 40.0%
AAACTACTGGACCAGAGATC+TGG - chr1.1:14938492-14938511 MS.gene058737:intron 45.0%
AAGACTCATTGAAGCAGGCA+TGG + chr1.1:14938221-14938240 None:intergenic 45.0%
AATCTTAATTGCAGCGGCTG+CGG + chr1.1:14939951-14939970 None:intergenic 45.0%
ACCAACCAAACTACCTACGT+GGG - chr1.1:14937749-14937768 MS.gene058737:intron 45.0%
AGATAACGCTCTCCAAAGCT+CGG + chr1.1:14940190-14940209 None:intergenic 45.0%
AGCACAAACCATCCACAACA+TGG + chr1.1:14937137-14937156 None:intergenic 45.0%
AGTATCACCTTCACCATTCG+GGG - chr1.1:14938883-14938902 MS.gene058737:CDS 45.0%
ATCCACTAGTAGGCTCAATG+AGG + chr1.1:14938141-14938160 None:intergenic 45.0%
ATTGCAGATGCTGAGGAGAA+AGG - chr1.1:14937835-14937854 MS.gene058737:CDS 45.0%
CACCTGAAACACAAGTTCAG+TGG + chr1.1:14939910-14939929 None:intergenic 45.0%
CACTGAACTTGTGTTTCAGG+TGG - chr1.1:14939908-14939927 MS.gene058737:intron 45.0%
CGGTTCCTATACCAGAAACA+AGG + chr1.1:14938544-14938563 None:intergenic 45.0%
CTCTCAAGACTCATTGAAGC+AGG + chr1.1:14938226-14938245 None:intergenic 45.0%
CTGTCTTTGACACTAGAGCA+AGG + chr1.1:14937194-14937213 None:intergenic 45.0%
CTTGCTCTAGTGTCAAAGAC+AGG - chr1.1:14937192-14937211 MS.gene058737:intron 45.0%
GAAAGTCCAGTATTGTCTGG+AGG - chr1.1:14938767-14938786 MS.gene058737:intron 45.0%
GCTCCTTTCATACCTTTAGC+TGG + chr1.1:14938295-14938314 None:intergenic 45.0%
GGTTCCACACCATATAGCTA+AGG + chr1.1:14938743-14938762 None:intergenic 45.0%
GTTCTCACTGATCCAGCTAA+AGG - chr1.1:14938280-14938299 MS.gene058737:intron 45.0%
TAGCATGATTGCAGATGCTG+AGG - chr1.1:14937828-14937847 MS.gene058737:CDS 45.0%
TCATTCATCGTGGGGAAAGA+TGG - chr1.1:14939618-14939637 MS.gene058737:intron 45.0%
TGCGGCAAAGCTAGAAATGA+TGG - chr1.1:14937166-14937185 MS.gene058737:intron 45.0%
TGCTGGAGTCAGTCCATAAT+TGG - chr1.1:14940083-14940102 MS.gene058737:intron 45.0%
! ACTAACACCTTTGGGTTTGC+AGG + chr1.1:14938385-14938404 None:intergenic 45.0%
! AGAACCATTCTTCGCGCTTT+TGG - chr1.1:14938247-14938266 MS.gene058737:intron 45.0%
! AGATCTGGAAAAGCTCTGGT+GGG - chr1.1:14938507-14938526 MS.gene058737:intron 45.0%
! GTTTCAGGTGGGATATCATC+TGG - chr1.1:14939920-14939939 MS.gene058737:intron 45.0%
! TCTTATGAGGGCCTTGTACA+TGG + chr1.1:14939312-14939331 None:intergenic 45.0%
!! AAGATCCAAGGTATTGGTGC+TGG - chr1.1:14939328-14939347 MS.gene058737:intron 45.0%
!! AGAGTTGATGCCCTTGTTTC+TGG - chr1.1:14938530-14938549 MS.gene058737:intron 45.0%
!! GATGCCCTTGTTTCTGGTAT+AGG - chr1.1:14938536-14938555 MS.gene058737:intron 45.0%
!!! TTTTTTATATAAAAATATGA+TGG - chr1.1:14939447-14939466 MS.gene058737:intron 5.0%
AAGGTCCCACGTAGGTAGTT+TGG + chr1.1:14937757-14937776 None:intergenic 50.0%
AATGACTCCCCGAATGGTGA+AGG + chr1.1:14938893-14938912 None:intergenic 50.0%
CAAGGCCCTCATAAGATCCA+AGG - chr1.1:14939316-14939335 MS.gene058737:intron 50.0%
CACCAACCAAACTACCTACG+TGG - chr1.1:14937748-14937767 MS.gene058737:intron 50.0%
CCAGAGATCTGGAAAAGCTC+TGG - chr1.1:14938503-14938522 MS.gene058737:intron 50.0%
GACATGAATGACTCCCCGAA+TGG + chr1.1:14938899-14938918 None:intergenic 50.0%
GATAACGCTCTCCAAAGCTC+GGG + chr1.1:14940189-14940208 None:intergenic 50.0%
GCAAAGAAGCCGGAAAATGC+TGG - chr1.1:14939971-14939990 MS.gene058737:intron 50.0%
GCATTCATGGCAGCTGCTAA+GGG - chr1.1:14938178-14938197 MS.gene058737:intron 50.0%
GGTTTCCCTCCAGACAATAC+TGG + chr1.1:14938776-14938795 None:intergenic 50.0%
GTAGGCGGAAGAGAATGAGT+TGG + chr1.1:14938456-14938475 None:intergenic 50.0%
GTATTGTCTGGAGGGAAACC+TGG - chr1.1:14938776-14938795 MS.gene058737:intron 50.0%
GTCCTCATTGAGCCTACTAG+TGG - chr1.1:14938136-14938155 MS.gene058737:intron 50.0%
TCCCACGTAGGTAGTTTGGT+TGG + chr1.1:14937753-14937772 None:intergenic 50.0%
TGAAGCCAGCACCAATACCT+TGG + chr1.1:14939336-14939355 None:intergenic 50.0%
TGGTATAGGAACCGGAGGTA+CGG - chr1.1:14938550-14938569 MS.gene058737:intron 50.0%
! CCAGAGCTTTTCCAGATCTC+TGG + chr1.1:14938506-14938525 None:intergenic 50.0%
! GAGATCTGGAAAAGCTCTGG+TGG - chr1.1:14938506-14938525 MS.gene058737:intron 50.0%
! GAGCCTACTAGTGGATACAC+TGG - chr1.1:14938145-14938164 MS.gene058737:intron 50.0%
! GTTGGTGAGCTAACAGACAC+TGG + chr1.1:14937735-14937754 None:intergenic 50.0%
!! ATTGGTGCTGGCTTCATTCC+CGG - chr1.1:14939340-14939359 MS.gene058737:intron 50.0%
!! CAGGTTGTTTTCCCGAGCTT+TGG - chr1.1:14940175-14940194 MS.gene058737:intron 50.0%
!! GTTTCTGGTATAGGAACCGG+AGG - chr1.1:14938545-14938564 MS.gene058737:intron 50.0%
AGCACCTGTTACCGTACCTC+CGG + chr1.1:14938564-14938583 None:intergenic 55.0%
GGCATTCATGGCAGCTGCTA+AGG - chr1.1:14938177-14938196 MS.gene058737:intron 55.0%
GTGGCGTCACCAAGAAGAGA+GGG + chr1.1:14939572-14939591 None:intergenic 55.0%
TGGCTTCATTCCCGGTGTTC+TGG - chr1.1:14939348-14939367 MS.gene058737:CDS 55.0%
TGTGGCGTCACCAAGAAGAG+AGG + chr1.1:14939573-14939592 None:intergenic 55.0%
! GGCACCAAAAGCGCGAAGAA+TGG + chr1.1:14938254-14938273 None:intergenic 55.0%
! GGAACCGGAGGTACGGTAAC+AGG - chr1.1:14938557-14938576 MS.gene058737:intron 60.0%
! GGAGGTACGGTAACAGGTGC+TGG - chr1.1:14938563-14938582 MS.gene058737:intron 60.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 14936950 14940270 14936950 ID=MS.gene058737
chr1.1 mRNA 14936950 14940270 14936950 ID=MS.gene058737.t1;Parent=MS.gene058737
chr1.1 exon 14940260 14940270 14940260 ID=MS.gene058737.t1.exon1;Parent=MS.gene058737.t1
chr1.1 CDS 14940260 14940270 14940260 ID=cds.MS.gene058737.t1;Parent=MS.gene058737.t1
chr1.1 exon 14940007 14940096 14940007 ID=MS.gene058737.t1.exon2;Parent=MS.gene058737.t1
chr1.1 CDS 14940007 14940096 14940007 ID=cds.MS.gene058737.t1;Parent=MS.gene058737.t1
chr1.1 exon 14939344 14939401 14939344 ID=MS.gene058737.t1.exon3;Parent=MS.gene058737.t1
chr1.1 CDS 14939344 14939401 14939344 ID=cds.MS.gene058737.t1;Parent=MS.gene058737.t1
chr1.1 exon 14938824 14939087 14938824 ID=MS.gene058737.t1.exon4;Parent=MS.gene058737.t1
chr1.1 CDS 14938824 14939087 14938824 ID=cds.MS.gene058737.t1;Parent=MS.gene058737.t1
chr1.1 exon 14938601 14938738 14938601 ID=MS.gene058737.t1.exon5;Parent=MS.gene058737.t1
chr1.1 CDS 14938601 14938738 14938601 ID=cds.MS.gene058737.t1;Parent=MS.gene058737.t1
chr1.1 exon 14938423 14938474 14938423 ID=MS.gene058737.t1.exon6;Parent=MS.gene058737.t1
chr1.1 CDS 14938423 14938474 14938423 ID=cds.MS.gene058737.t1;Parent=MS.gene058737.t1
chr1.1 exon 14937821 14937900 14937821 ID=MS.gene058737.t1.exon7;Parent=MS.gene058737.t1
chr1.1 CDS 14937821 14937900 14937821 ID=cds.MS.gene058737.t1;Parent=MS.gene058737.t1
chr1.1 exon 14937393 14937444 14937393 ID=MS.gene058737.t1.exon8;Parent=MS.gene058737.t1
chr1.1 CDS 14937393 14937444 14937393 ID=cds.MS.gene058737.t1;Parent=MS.gene058737.t1
chr1.1 exon 14937214 14937293 14937214 ID=MS.gene058737.t1.exon9;Parent=MS.gene058737.t1
chr1.1 CDS 14937214 14937293 14937214 ID=cds.MS.gene058737.t1;Parent=MS.gene058737.t1
chr1.1 exon 14936950 14937042 14936950 ID=MS.gene058737.t1.exon10;Parent=MS.gene058737.t1
chr1.1 CDS 14936950 14937042 14936950 ID=cds.MS.gene058737.t1;Parent=MS.gene058737.t1
Gene Sequence

>MS.gene058737

ATGTCACGGAAGTAAGTTACCATATATGTTTATATAATCAACATCACTTTTTTTTTTTTTTTGGATCTATGTAATCAAACATTTTTGCTTTTTGTTTTTTTTACATATGTTGATATATTTTGTTTGATTTATTCATTTTTTGAAATGTACAGTTGATTGGTAAAACTCCACTAGTATATCTCAACCATGTTGTGGATGGTTTGTGCTTGCACAAATTGCGGCAAAGCTAGAAATGATGGAACCTTGCTCTAGTGTCAAAGACAGGTATATAGATTTCTGAGATTTTTAAAATTGGTTTTGTATTGTTTAATGTAGTAAGTTAGTTGTGATTAGTTGTAGTACCTTAGAATCATTATATAAAGTGATCATACATACACTTATATGTAATCAACTTCTTCATTAAATCAATTCCAAAATCAATCTTTCTATCATTTTATCTTTTTTGTTGGGCTCTAAATTTGCTAGATAAGTTTCCCTACGATTCTCTAGATTTTCTGCTTGACTATAGAAATGTTTTTGACACTGTTGTTTGTTTTGTTGATAATGAGATTGATTTCAATTGGTTTAAGTTGGAATCTGATTATGAGATCATTACAATAGGCATCATGGAACATATAATTTTGGTGTTGAAGTTGCATTATTAATGTCCATGACTTAATTCTGTTTCATATGCCAAAAGATCTATTCTGAATGTTCGTGTTTCTTTTTTTTTTTTTTTTGGTAGACAAATGTTAGTAAGTTAGTGGTTACATTAGTTTTCAGGGATTTCACTTTGGACTTCGCCAGTGTCTGTTAGCTCACCAACCAAACTACCTACGTGGGACCTTAATGTTTTTTTAGTTGCTATATAATTCTTTCATTTGATGCAGGATAGGATATAGCATGATTGCAGATGCTGAGGAGAAAGGACTCATTAGACCGCAAGAAGTTAGTTTTCCTTCTTGATATTTAATTCATGATGTACATACTCTTCACATTGCATTAAAACTTCCTTCTACTTACTCTTTTGACCAACTTTAGTAGCCGCATTAAGAATAAGTCATTCAGTTTTAATTGAGAGTCATTATCACTCTCAAATTTTAAATCGTTTACTTAGTTGGTTTTGTGTGGTACTTAGACCATTGATTATCAAATAAGAGATGAAATTCACAAGGTTAATAATTTTTCGTTCTTCATTTTGCAGAGTGTCCTCATTGAGCCTACTAGTGGATACACTGGTATTGGTTTGGCATTCATGGCAGCTGCTAAGGGCTATAAACTTATTATAACCATGCCTGCTTCAATGAGTCTTGAGAGAAGAACCATTCTTCGCGCTTTTGGTGCCGAGTTAGTTCTCACTGATCCAGCTAAAGGTATGAAAGGAGCTGTTCAGAAAGCTGAAGAGATATTAGCAAAGACTCCCAATGCTTACATTCTTCAGCAATTTGAAAATCCTGCAAACCCAAAGGTGTTAGTTGTGTCAATGTGTTATTTTTAGAGAATCACTTGGTTGGATCGAATTAACCAACTCATTCTCTTCCGCCTACTTTTAGGTTCACTATGAAACTACTGGACCAGAGATCTGGAAAAGCTCTGGTGGGAGAGTTGATGCCCTTGTTTCTGGTATAGGAACCGGAGGTACGGTAACAGGTGCTGGAAAATATTTGAAAGAGCAAAACCCTGATATTAAGGTTAGGATTATGATTCTCTAACTGTATAATATTACCTTCTATAAATTTCTAGGCATGTTTCTTTTGCAAGTTTTTATTTTTTCTAATATTTCTTTGTTTTGCTTACAATATATTTTTTTTCCTTAGCTATATGGTGTGGAACCACTTGAAAGTCCAGTATTGTCTGGAGGGAAACCTGGTGAGTTTTCCTTCTTATCCTTTATTTCTATTGCAAGTTAAATTCATATAATTGATCTTAAGTTCCCTAATGCACATTGAGGAAAAGTATCACCTTCACCATTCGGGGAGTCATTCATGTCAATTGCTGACAGTTTATTTGCCTCGATGGATCAAATGTGCAAATACTGTCACTGATTGTTACTGCCTCGATGATTATATGCACTAGTACATAATATGCCCACTTCATGAGTACTTGTAAAATCATGGATTCTGATTTCTCTGTGGTACTTACTACTGAGTACTGAATAAGTAGTAAGCAAGTCAATACCATTTTTCTTGGAAATGAAAACGGTATTGATTATGATTTTCCTTCTCACTTTTGCTTTGTTATATCCAACAAGAAAAAAGTTTTATTAACTTTTCACTGTTTATTTTTGTACATTGCTTTGTTATTTGAATGGCTGTAGTGAGATTTATTAAATGACTTCCCTCTTCTATGTATCATTCCCCTGACAAACGCATGATATTTTCCATGTACAAGGCCCTCATAAGATCCAAGGTATTGGTGCTGGCTTCATTCCCGGTGTTCTGGATGTTGATTTGCTTGATGAAGTAATCCAAGTAAGGCATGAATCTTTTGATGATATATATTCACTTAAATAAATATATTTTTTATATAAAAATATGATGGACCAATTGTACTCCCTTCAATAATAAAGTTTAAGTAAAAAAAATGTAGCTGTCCATTTGGTTAACTTATGAGTATGCAAGCTATTGCATTGTCTTTTTTCCCTCTCTTCTTGGTGACGCCACATTATGCAAATTCACGCACTTACTATTCATTCATCGTGGGGAAAGATGGAAAGTACATTAATTCATTTACTACGAAGACGCATGTTTTACTTGTTTAATATTCGCCGAATGTTTGTATATTCTATTAGTTCTATGCGCTATAGTCCATAAATAACTGGCAACCCTTACTTTTGTGTTTTTGTAGATATCCAGCGAAGAAGCTATTGAAACTGCTAAACTTCTTGCATTAAAAGAAGGTTTGCTGGTAAGTTATCATCTTTTGTTAATTGCATCATTTGAAGTATCTTTCCATTTTTGAATGATATGCTATTTTTACCACTGAACTTGTGTTTCAGGTGGGATATCATCTGGTGCTGCCGCAGCCGCTGCAATTAAGATTGCAAAGAAGCCGGAAAATGCTGGAAAACTCATTGTTGTAAGTTTATCATTTGATTATCTGCTATTAAATATTCTTCTAAAGATAGCTTAAATGTAATATCAACTGAATCATGTGCTGGAGTCAGTCCATAATTGGCCATATTAGAGTTTCTCTCATTCAATATCACTAAAATTATTATATTGTTGCACTTATTCGATACATATACAGGTTGTTTTCCCGAGCTTTGGAGAGCGTTATCTATCATCTGTGCTCTTTGAATCAGTGAAGCGAGAAGCCGAAAACATGATCTTTGAGCATTGA

Protein sequence

>MS.gene058737.t1

MSRNISQPCCGWFVLAQIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPQESVLIEPTSGYTGIGLAFMAAAKGYKLIITMPASMSLERRTILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYILQQFENPANPKVHYETTGPEIWKSSGGRVDALVSGIGTGGTVTGAGKYLKEQNPDIKLYGVEPLESPVLSGGKPGPHKIQGIGAGFIPGVLDVDLLDEVIQISSEEAIETAKLLALKEGGISSGAAAAAAIKIAKKPENAGKLIVVVFPSFGERYLSSVLFESVKREAENMIFEH