AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene69913


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene69913.t1 MTR_1g081610 97.538 325 8 0 1 325 1 325 0.0 636
MS.gene69913.t1 MTR_5g006340 88.272 324 38 0 1 324 1 324 0.0 531
MS.gene69913.t1 MTR_1g103690 87.654 324 40 0 1 324 1 324 0.0 529
MS.gene69913.t1 MTR_4g087490 70.625 320 94 0 2 321 41 360 7.60e-171 479
MS.gene69913.t1 MTR_1g081620 74.534 322 82 0 3 324 2 323 6.07e-169 472
MS.gene69913.t1 MTR_1g081625 74.062 320 83 0 5 324 4 323 4.20e-164 460
MS.gene69913.t1 MTR_4g087510 66.562 320 98 2 2 321 41 351 8.14e-158 445
MS.gene69913.t1 MTR_7g078070 63.810 315 114 0 7 321 60 374 4.38e-146 417
MS.gene69913.t1 MTR_7g078070 64.286 308 110 0 14 321 7 314 2.30e-144 410
MS.gene69913.t1 MTR_7g087110 63.208 318 107 1 4 321 61 368 3.61e-137 394
MS.gene69913.t1 MTR_1g081640 71.530 281 80 0 5 285 4 284 5.88e-133 381
MS.gene69913.t1 MTR_4g087520 73.308 266 71 0 56 321 1 266 2.69e-131 375
MS.gene69913.t1 MTR_7g078070 64.057 281 101 0 41 321 1 281 1.20e-130 374
MS.gene69913.t1 MTR_5g095670 29.462 353 190 6 12 307 48 398 6.35e-42 150
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene69913.t1 AT4G14880 81.073 317 60 0 8 324 5 321 0.0 503
MS.gene69913.t1 AT4G14880 81.073 317 60 0 8 324 5 321 0.0 503
MS.gene69913.t1 AT4G14880 81.073 317 60 0 8 324 5 321 0.0 503
MS.gene69913.t1 AT4G14880 81.073 317 60 0 8 324 5 321 0.0 503
MS.gene69913.t1 AT4G14880 81.073 317 60 0 8 324 5 321 0.0 503
MS.gene69913.t1 AT2G43750 75.633 316 77 0 6 321 73 388 7.51e-167 470
MS.gene69913.t1 AT2G43750 75.633 316 77 0 6 321 73 388 7.51e-167 470
MS.gene69913.t1 AT3G59760 75.157 318 79 0 4 321 109 426 7.77e-167 471
MS.gene69913.t1 AT3G59760 75.157 318 79 0 4 321 109 426 8.61e-167 471
MS.gene69913.t1 AT3G04940 70.717 321 94 0 1 321 1 321 1.69e-159 448
MS.gene69913.t1 AT3G04940 70.717 321 94 0 1 321 1 321 1.69e-159 448
MS.gene69913.t1 AT5G28020 72.360 322 89 0 3 324 2 323 3.53e-158 445
MS.gene69913.t1 AT5G28020 72.360 322 89 0 3 324 2 323 3.53e-158 445
MS.gene69913.t1 AT5G28020 72.360 322 89 0 3 324 2 323 3.53e-158 445
MS.gene69913.t1 AT5G28020 72.360 322 89 0 3 324 2 323 3.53e-158 445
MS.gene69913.t1 AT5G28020 72.360 322 89 0 3 324 2 323 3.53e-158 445
MS.gene69913.t1 AT3G59760 70.988 324 92 2 4 325 109 432 2.58e-152 434
MS.gene69913.t1 AT5G28030 69.876 322 97 0 3 324 2 323 1.58e-148 421
MS.gene69913.t1 AT5G28030 69.876 322 97 0 3 324 2 323 1.58e-148 421
MS.gene69913.t1 AT5G28030 69.876 322 97 0 3 324 2 323 1.58e-148 421
MS.gene69913.t1 AT5G28030 69.876 322 97 0 3 324 2 323 1.58e-148 421
MS.gene69913.t1 AT3G22460 77.695 269 40 1 56 324 1 249 4.16e-147 414
MS.gene69913.t1 AT3G61440 61.859 312 119 0 10 321 51 362 5.13e-137 393
MS.gene69913.t1 AT3G03630 63.125 320 108 1 4 323 95 404 7.72e-134 386
MS.gene69913.t1 AT3G61440 63.534 266 97 0 56 321 1 266 2.78e-118 342
MS.gene69913.t1 AT5G28030 68.273 249 79 0 3 251 2 250 6.32e-114 330
MS.gene69913.t1 AT3G22460 84.043 188 30 0 1 188 1 188 1.40e-112 324
MS.gene69913.t1 AT3G61440 60.305 262 104 0 10 271 51 312 1.45e-110 325
MS.gene69913.t1 AT5G28020 70.886 237 69 0 88 324 1 237 5.51e-106 310
MS.gene69913.t1 AT3G61440 62.917 240 89 0 82 321 2 241 8.47e-106 309
MS.gene69913.t1 AT1G55880 27.624 362 202 6 4 307 36 395 4.39e-38 140
MS.gene69913.t1 AT1G55880 29.032 248 134 3 4 210 36 282 2.61e-31 120

Find 75 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGTTGATGCCCTTGTTTC+TGG 0.184437 1.4:+66087128 MS.gene69913:CDS
ATATTCCTAACCTTAATATC+AGG 0.255046 1.4:-66087206 None:intergenic
TGGCTTCATTCCTGGTGTTC+TGG 0.280161 1.4:+66087940 MS.gene69913:CDS
ACTAACACCTTTGGGTTTGC+AGG 0.288673 1.4:-66086980 None:intergenic
ATTGGTGCTGGCTTCATTCC+TGG 0.295467 1.4:+66087932 MS.gene69913:CDS
AGAACCATTCTTCGCGCTTT+TGG 0.297151 1.4:+66086845 MS.gene69913:CDS
TGCATTAAAAGAAGGTTTGC+TGG 0.326558 1.4:+66088406 MS.gene69913:CDS
AGAGCAAAACCCTGATATTA+AGG 0.326681 1.4:+66087196 MS.gene69913:CDS
GGCATTCATGGCAGCTGCTA+AGG 0.329627 1.4:+66086775 MS.gene69913:CDS
TGGTATTGGTTTGGCATTCA+TGG 0.343061 1.4:+66086763 MS.gene69913:CDS
GATGCCCTTGTTTCTGGTAT+AGG 0.346426 1.4:+66087134 MS.gene69913:CDS
GGAACCGGAGGTACGGTAAC+AGG 0.406043 1.4:+66087155 MS.gene69913:CDS
CTTGTTTCTGGTATAGGAAC+CGG 0.413375 1.4:+66087140 MS.gene69913:CDS
TAGGTTCACTATGAAACTAC+TGG 0.414969 1.4:+66087077 MS.gene69913:intron
AAACTTCTTGCATTAAAAGA+AGG 0.415012 1.4:+66088398 MS.gene69913:CDS
CCAATACCTTGGATCTTATG+AGG 0.417262 1.4:-66087914 None:intergenic
GGTTTCCCTCCAGACAATAC+TGG 0.417936 1.4:-66087371 None:intergenic
AAACTACTGGACCAGAGATC+TGG 0.427472 1.4:+66087090 MS.gene69913:CDS
GCTCCTTTCATACCTTTAGC+TGG 0.435185 1.4:-66086890 None:intergenic
TGCTGAAGAATGTAAGCATT+GGG 0.439335 1.4:-66086947 None:intergenic
ACTAGTGGAAACACTGGTAT+TGG 0.441486 1.4:+66086749 MS.gene69913:CDS
TGCTGCAAAGCTAGAAATGA+TGG 0.443156 1.4:+66085731 MS.gene69913:CDS
TGGAAACACTGGTATTGGTT+TGG 0.446534 1.4:+66086754 MS.gene69913:CDS
GCAAAGAAGCCGGAAAATGC+TGG 0.482832 1.4:+66088564 MS.gene69913:CDS
CTTGAAAGTCCAGTATTGTC+TGG 0.488243 1.4:+66087362 MS.gene69913:CDS
CTCTCAAGACTCATTGAAGC+AGG 0.492620 1.4:-66086821 None:intergenic
GGAGGTACGGTAACAGGTGC+TGG 0.494965 1.4:+66087161 MS.gene69913:CDS
CCAGAGATCTGGAAAAGCTC+TGG 0.501405 1.4:+66087101 MS.gene69913:CDS
ATTGCAGATGCTGAGGAGAA+AGG 0.503285 1.4:+66086433 MS.gene69913:CDS
TATTCCTAACCTTAATATCA+GGG 0.504961 1.4:-66087205 None:intergenic
CCTCATAAGATCCAAGGTAT+TGG 0.505205 1.4:+66087914 MS.gene69913:CDS
GTATTGTCTGGAGGGAAACC+TGG 0.505854 1.4:+66087374 MS.gene69913:CDS
AATCTTAATTGCAGCGGCTG+CGG 0.507802 1.4:-66088541 None:intergenic
AGTTTCAATAGCTTCTTCGC+TGG 0.508262 1.4:-66088372 None:intergenic
TTTCAGGTGGGGATATCATC+TGG 0.511463 1.4:+66088513 MS.gene69913:intron
TTGCTGAAGAATGTAAGCAT+TGG 0.512878 1.4:-66086948 None:intergenic
AGCACCTGTTACCGTACCTC+CGG 0.515405 1.4:-66087159 None:intergenic
GCATTCATGGCAGCTGCTAA+GGG 0.522984 1.4:+66086776 MS.gene69913:CDS
GTTCTCACTGATCCAGCTAA+AGG 0.528590 1.4:+66086878 MS.gene69913:CDS
TTCAGTGACATCTTTAGCAA+TGG 0.531511 1.4:-66085511 None:intergenic
AGATAACGCTCTCCAAAGCT+CGG 0.532448 1.4:-66088776 None:intergenic
AAGATCCAAGGTATTGGTGC+TGG 0.533186 1.4:+66087920 MS.gene69913:CDS
TGAAGCCAGCACCAATACCT+TGG 0.537270 1.4:-66087925 None:intergenic
GGCACCAAAAGCGCGAAGAA+TGG 0.537288 1.4:-66086849 None:intergenic
GAGATCTGGAAAAGCTCTGG+TGG 0.541486 1.4:+66087104 MS.gene69913:CDS
CGGTTCCTATACCAGAAACA+AGG 0.542856 1.4:-66087139 None:intergenic
GATAACGCTCTCCAAAGCTC+GGG 0.550231 1.4:-66088775 None:intergenic
ATACCAGTGTTTCCACTAGT+AGG 0.551210 1.4:-66086746 None:intergenic
CTTTGCAATCTTAATTGCAG+CGG 0.555528 1.4:-66088547 None:intergenic
TGGTATAGGAACCGGAGGTA+CGG 0.570019 1.4:+66087148 MS.gene69913:CDS
CTTGCTCTAGTGTCAAAGAC+AGG 0.573863 1.4:+66085757 MS.gene69913:CDS
AAAGTCCAGTATTGTCTGGA+GGG 0.575979 1.4:+66087366 MS.gene69913:CDS
GTCCTCATTGAGCCTACTAG+TGG 0.580307 1.4:+66086734 MS.gene69913:CDS
TATCTCAATCATGTCGTGGA+TGG 0.582543 1.4:+66085693 MS.gene69913:CDS
GATCCAGCTAAAGGTATGAA+AGG 0.584953 1.4:+66086887 MS.gene69913:CDS
AATTAAGATTGCAAAGAAGC+CGG 0.588073 1.4:+66088554 MS.gene69913:CDS
GAAGGAAAACTAACTTCTTG+CGG 0.588318 1.4:-66086466 None:intergenic
GACAATACTGGACTTTCAAG+TGG 0.596668 1.4:-66087359 None:intergenic
GTTGATTGGTAAAACTCCAC+TGG 0.601681 1.4:+66085668 MS.gene69913:intron
AAGACTCATTGAAGCAGGCA+TGG 0.602785 1.4:-66086816 None:intergenic
CAAGGCCCTCATAAGATCCA+AGG 0.604638 1.4:+66087908 MS.gene69913:intron
CAATACCTTGGATCTTATGA+GGG 0.606155 1.4:-66087913 None:intergenic
TAGCATGATTGCAGATGCTG+AGG 0.608575 1.4:+66086426 MS.gene69913:CDS
AAATCAACATCCAGAACACC+AGG 0.609679 1.4:-66087950 None:intergenic
AGATCTGGAAAAGCTCTGGT+GGG 0.624158 1.4:+66087105 MS.gene69913:CDS
GAAAGTCCAGTATTGTCTGG+AGG 0.625339 1.4:+66087365 MS.gene69913:CDS
GAGCCTACTAGTGGAAACAC+TGG 0.626296 1.4:+66086743 MS.gene69913:CDS
TGAAAATCCTGCAAACCCAA+AGG 0.632579 1.4:+66086973 MS.gene69913:CDS
GGTATATCTCAATCATGTCG+TGG 0.633124 1.4:+66085689 MS.gene69913:CDS
CTGTCTTTGACACTAGAGCA+AGG 0.647667 1.4:-66085756 None:intergenic
TGGATCAGTGAGAACTAACT+CGG 0.649731 1.4:-66086870 None:intergenic
GTTTCTGGTATAGGAACCGG+AGG 0.680508 1.4:+66087143 MS.gene69913:CDS
TTCCACTAGTAGGCTCAATG+AGG 0.683327 1.4:-66086736 None:intergenic
GGTTCCTATACCAGAAACAA+GGG 0.692573 1.4:-66087138 None:intergenic
ACATGATTGAGATATACCAG+TGG 0.756024 1.4:-66085684 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTGTTTTTTTTTTTTTTTTT+GGG + chr1.4:66086247-66086266 MS.gene69913:intron 10.0%
!! AATAGAAATAAAGGATAAAA+AGG - chr1.4:66087408-66087427 None:intergenic 15.0%
!! ACTTAAACTTTATTATTGAA+GGG - chr1.4:66088077-66088096 None:intergenic 15.0%
!! TAATAGAATATACAAACATT+CGG - chr1.4:66088291-66088310 None:intergenic 15.0%
!! TACTTAAACTTTATTATTGA+AGG - chr1.4:66088078-66088097 None:intergenic 15.0%
!!! AAATTTTAAATCGTTTACTT+AGG + chr1.4:66086622-66086641 MS.gene69913:intron 15.0%
!!! ACATCACTTTTTTTTTTTTT+TGG + chr1.4:66085559-66085578 MS.gene69913:intron 15.0%
!!! ATCATTTTATCTTTTTTGTT+GGG + chr1.4:66085978-66085997 MS.gene69913:intron 15.0%
!!! CGTGTTTTTTTTTTTTTTTT+TGG + chr1.4:66086246-66086265 MS.gene69913:intron 15.0%
!!! TAATAAAACTTTTTTCTTGT+TGG - chr1.4:66087767-66087786 None:intergenic 15.0%
!!! TATCATTTTATCTTTTTTGT+TGG + chr1.4:66085977-66085996 MS.gene69913:intron 15.0%
!! ATAGCAACTAAAAAACATTA+AGG - chr1.4:66086375-66086394 None:intergenic 20.0%
!! ATTACCTTCTATAAATTTCT+AGG + chr1.4:66087248-66087267 MS.gene69913:intron 20.0%
!! CACTTTATATAATGATTCTA+AGG - chr1.4:66085899-66085918 None:intergenic 20.0%
!! TCATGAATTAAATATCAAGA+AGG - chr1.4:66086487-66086506 None:intergenic 20.0%
!!! AATGATAGAAAGATTGATTT+TGG - chr1.4:66085964-66085983 None:intergenic 20.0%
!!! ACATTACTTTGTTATTTGAA+TGG + chr1.4:66087809-66087828 MS.gene69913:intron 20.0%
!!! ATAATGAGATTGATTTCAAT+TGG + chr1.4:66086091-66086110 MS.gene69913:intron 20.0%
!!! ATCTCTTATTTGATAATCAA+TGG - chr1.4:66086670-66086689 None:intergenic 20.0%
!!! ATTTTTCTTGGAAATCAAAA+CGG + chr1.4:66087700-66087719 MS.gene69913:intron 20.0%
!!! ATTTTTTTTCCTTAGCTATA+TGG + chr1.4:66087329-66087348 MS.gene69913:intron 20.0%
!!! CATTATGGAACATATAATTT+TGG + chr1.4:66086152-66086171 MS.gene69913:intron 20.0%
!!! TAGTTTTGTATTGTTTAATG+TGG + chr1.4:66085847-66085866 MS.gene69913:intron 20.0%
!!! TTAACTTGCAATAGAAATAA+AGG - chr1.4:66087417-66087436 None:intergenic 20.0%
! AAACTTCTTGCATTAAAAGA+AGG + chr1.4:66088398-66088417 MS.gene69913:CDS 25.0%
! AATAAGAGATGAAATTCACA+AGG + chr1.4:66086680-66086699 MS.gene69913:intron 25.0%
! AATAGCATATCATTCGAAAA+TGG - chr1.4:66088475-66088494 None:intergenic 25.0%
! ATAATTCTTTCATTTGATGC+AGG + chr1.4:66086395-66086414 MS.gene69913:intron 25.0%
! ATACTCATAAGTTAACCAAA+AGG - chr1.4:66088117-66088136 None:intergenic 25.0%
! ATATTCCTAACCTTAATATC+AGG - chr1.4:66087209-66087228 None:intergenic 25.0%
! GATTATGAGATCATTACAAT+TGG + chr1.4:66086129-66086148 MS.gene69913:intron 25.0%
! TATGAAACAGAATTAAGTCA+TGG - chr1.4:66086201-66086220 None:intergenic 25.0%
! TATTCCTAACCTTAATATCA+GGG - chr1.4:66087208-66087227 None:intergenic 25.0%
! TGAATGACTTATTCTTAATG+CGG - chr1.4:66086574-66086593 None:intergenic 25.0%
! TTTAAATCGTTTACTTAGGT+TGG + chr1.4:66086626-66086645 MS.gene69913:intron 25.0%
!! AACATTCAGAATAGATCTTT+TGG - chr1.4:66086226-66086245 None:intergenic 25.0%
!! TGATTTCAATTGGTTTAAGT+TGG + chr1.4:66086101-66086120 MS.gene69913:intron 25.0%
!!! GTTATTTTTAGAGAATCACT+TGG + chr1.4:66087014-66087033 MS.gene69913:intron 25.0%
!!! GTTTTGATTTCCAAGAAAAA+TGG - chr1.4:66087701-66087720 None:intergenic 25.0%
!!! TTTTGAAATGTACAGTTGAT+TGG + chr1.4:66085654-66085673 MS.gene69913:intron 25.0%
AAAACCCTGATATTAAGGTT+AGG + chr1.4:66087201-66087220 MS.gene69913:intron 30.0%
AAAATATCATGCGTTTGTCA+GGG - chr1.4:66087881-66087900 None:intergenic 30.0%
AACTCTAATATGGCCAATTA+TGG - chr1.4:66088688-66088707 None:intergenic 30.0%
AATTAAGATTGCAAAGAAGC+CGG + chr1.4:66088554-66088573 MS.gene69913:CDS 30.0%
ACTTACTATTCATTCATCGT+TGG + chr1.4:66088201-66088220 MS.gene69913:intron 30.0%
AGAAAATCTAGAGAATCGTA+GGG - chr1.4:66086027-66086046 None:intergenic 30.0%
ATAACAAAGCAAAAGTGAGA+AGG - chr1.4:66087742-66087761 None:intergenic 30.0%
CACTTATTCGATACATATAC+AGG + chr1.4:66088745-66088764 MS.gene69913:intron 30.0%
CATGAGTACTTGTAAAATCA+TGG + chr1.4:66087615-66087634 MS.gene69913:intron 30.0%
CATGCCTAGAAATTTATAGA+AGG - chr1.4:66087255-66087274 None:intergenic 30.0%
CTTACTATTCATTCATCGTT+GGG + chr1.4:66088202-66088221 MS.gene69913:intron 30.0%
GAATGAGAGAAACTCTAATA+TGG - chr1.4:66088698-66088717 None:intergenic 30.0%
GACAAATGTTAGTAAGTTAG+TGG + chr1.4:66086272-66086291 MS.gene69913:intron 30.0%
GATCATTACAATTGGCATTA+TGG + chr1.4:66086137-66086156 MS.gene69913:intron 30.0%
TAAGAGTTGCCAGTTATTTA+TGG - chr1.4:66088331-66088350 None:intergenic 30.0%
TTCATAGTGAACCTAAAAGT+AGG - chr1.4:66087072-66087091 None:intergenic 30.0%
TTGATGAAGTAATCCAAGTA+AGG + chr1.4:66087975-66087994 MS.gene69913:intron 30.0%
TTTACAAGTACTCATGAAGT+GGG - chr1.4:66087611-66087630 None:intergenic 30.0%
! AAAAAATGTAGCTGTCCTTT+TGG + chr1.4:66088099-66088118 MS.gene69913:intron 30.0%
! ATGCTCAAAGATCATGTTTT+CGG - chr1.4:66088837-66088856 None:intergenic 30.0%
! ATTATTGAAGGGAGTACAAT+TGG - chr1.4:66088066-66088085 None:intergenic 30.0%
! CATGATATTTTCCATGTACA+AGG + chr1.4:66087890-66087909 MS.gene69913:intron 30.0%
! TTTTACAAGTACTCATGAAG+TGG - chr1.4:66087612-66087631 None:intergenic 30.0%
!! CAAGTCAATACCATTTTTCT+TGG + chr1.4:66087688-66087707 MS.gene69913:intron 30.0%
!! TTTTTAGAGAATCACTTGGT+TGG + chr1.4:66087018-66087037 MS.gene69913:intron 30.0%
!!! AGTGGTTACATTAGTTTTCA+GGG + chr1.4:66086290-66086309 MS.gene69913:intron 30.0%
!!! TAGTGGTTACATTAGTTTTC+AGG + chr1.4:66086289-66086308 MS.gene69913:intron 30.0%
AAATATCATGCGTTTGTCAG+GGG - chr1.4:66087880-66087899 None:intergenic 35.0%
ACATGATTGAGATATACCAG+TGG - chr1.4:66085687-66085706 None:intergenic 35.0%
ACTAGTGCATATAATCATCG+AGG - chr1.4:66087578-66087597 None:intergenic 35.0%
AGAGCAAAACCCTGATATTA+AGG + chr1.4:66087196-66087215 MS.gene69913:CDS 35.0%
ATAGTGAACCTAAAAGTAGG+CGG - chr1.4:66087069-66087088 None:intergenic 35.0%
ATATCAACTGAATCATGTGC+TGG + chr1.4:66088659-66088678 MS.gene69913:intron 35.0%
ATTGACACAACTAACACCTT+TGG - chr1.4:66086992-66087011 None:intergenic 35.0%
CAAAAGATTCATGCCTTACT+TGG - chr1.4:66087991-66088010 None:intergenic 35.0%
CAATACCTTGGATCTTATGA+GGG - chr1.4:66087916-66087935 None:intergenic 35.0%
CAGAAAATCTAGAGAATCGT+AGG - chr1.4:66086028-66086047 None:intergenic 35.0%
CGCTATAGTCCATAAATAAC+TGG + chr1.4:66088319-66088338 MS.gene69913:intron 35.0%
CTTTGCAATCTTAATTGCAG+CGG - chr1.4:66088550-66088569 None:intergenic 35.0%
GAAAATATCATGCGTTTGTC+AGG - chr1.4:66087882-66087901 None:intergenic 35.0%
GAAGGAAAACTAACTTCTTG+CGG - chr1.4:66086469-66086488 None:intergenic 35.0%
GATAAAAAGGAAAACTCACC+AGG - chr1.4:66087395-66087414 None:intergenic 35.0%
TAGGTTCACTATGAAACTAC+TGG + chr1.4:66087077-66087096 MS.gene69913:intron 35.0%
TCTTTCATTTGATGCAGGAT+AGG + chr1.4:66086400-66086419 MS.gene69913:intron 35.0%
TGCATTAAAAGAAGGTTTGC+TGG + chr1.4:66088406-66088425 MS.gene69913:CDS 35.0%
TGCTGAAGAATGTAAGCATT+GGG - chr1.4:66086950-66086969 None:intergenic 35.0%
TGGTCAAAAGAGTAAGTAGA+AGG - chr1.4:66086541-66086560 None:intergenic 35.0%
TTCAGTGACATCTTTAGCAA+TGG - chr1.4:66085514-66085533 None:intergenic 35.0%
TTGACACAACTAACACCTTT+GGG - chr1.4:66086991-66087010 None:intergenic 35.0%
TTGCTGAAGAATGTAAGCAT+TGG - chr1.4:66086951-66086970 None:intergenic 35.0%
! AAAGTATCACCTTCACCATT+CGG + chr1.4:66087479-66087498 MS.gene69913:intron 35.0%
! ACTTTTCCTCAATGTGCATT+AGG - chr1.4:66087464-66087483 None:intergenic 35.0%
! ATGAGTTTTCCAGCATTTTC+CGG - chr1.4:66088576-66088595 None:intergenic 35.0%
! CTTTTCCTCAATGTGCATTA+GGG - chr1.4:66087463-66087482 None:intergenic 35.0%
! TTTTCCTTAGCTATATGGTG+TGG + chr1.4:66087334-66087353 MS.gene69913:intron 35.0%
!! AGTTTTCAGGGATTTCACTT+TGG + chr1.4:66086302-66086321 MS.gene69913:intron 35.0%
!!! TTACTTAGGTTGGTTTTGTG+TGG + chr1.4:66086636-66086655 MS.gene69913:intron 35.0%
AAAACATTAAGGTCCCACGT+AGG - chr1.4:66086364-66086383 None:intergenic 40.0%
AAAGTCCAGTATTGTCTGGA+GGG + chr1.4:66087366-66087385 MS.gene69913:CDS 40.0%
AAATCAACATCCAGAACACC+AGG - chr1.4:66087953-66087972 None:intergenic 40.0%
AAGTATCACCTTCACCATTC+GGG + chr1.4:66087480-66087499 MS.gene69913:intron 40.0%
AAGTTCCCTAATGCACATTG+AGG + chr1.4:66087455-66087474 MS.gene69913:intron 40.0%
ACTAGTGGAAACACTGGTAT+TGG + chr1.4:66086749-66086768 MS.gene69913:CDS 40.0%
AGGGGAATGATACATAGAAG+AGG - chr1.4:66087862-66087881 None:intergenic 40.0%
AGTTTCAATAGCTTCTTCGC+TGG - chr1.4:66088375-66088394 None:intergenic 40.0%
ATACCAGTGTTTCCACTAGT+AGG - chr1.4:66086749-66086768 None:intergenic 40.0%
CATGGATTCTGATTTCTCTG+TGG + chr1.4:66087633-66087652 MS.gene69913:intron 40.0%
CCAATACCTTGGATCTTATG+AGG - chr1.4:66087917-66087936 None:intergenic 40.0%
CCTCATAAGATCCAAGGTAT+TGG + chr1.4:66087914-66087933 MS.gene69913:CDS 40.0%
CTTAATGCGGCTACTAAAGT+TGG - chr1.4:66086561-66086580 None:intergenic 40.0%
CTTGAAAGTCCAGTATTGTC+TGG + chr1.4:66087362-66087381 MS.gene69913:CDS 40.0%
GACAATACTGGACTTTCAAG+TGG - chr1.4:66087362-66087381 None:intergenic 40.0%
GGGGAATGATACATAGAAGA+GGG - chr1.4:66087861-66087880 None:intergenic 40.0%
GGTATATCTCAATCATGTCG+TGG + chr1.4:66085689-66085708 MS.gene69913:CDS 40.0%
GGTTCCTATACCAGAAACAA+GGG - chr1.4:66087141-66087160 None:intergenic 40.0%
GTGCGTGAATTTGCATAATG+TGG - chr1.4:66088183-66088202 None:intergenic 40.0%
GTTGATTGGTAAAACTCCAC+TGG + chr1.4:66085668-66085687 MS.gene69913:intron 40.0%
TACCACTGAACTTGTGTTTC+AGG + chr1.4:66088497-66088516 MS.gene69913:intron 40.0%
TATCTCAATCATGTCGTGGA+TGG + chr1.4:66085693-66085712 MS.gene69913:CDS 40.0%
TCATTCATCGTTGGGAAAGA+TGG + chr1.4:66088210-66088229 MS.gene69913:intron 40.0%
TGAAAATCCTGCAAACCCAA+AGG + chr1.4:66086973-66086992 MS.gene69913:CDS 40.0%
TGACAGTTTATTTGCCTCGA+TGG + chr1.4:66087517-66087536 MS.gene69913:intron 40.0%
TGCTGCAAAGCTAGAAATGA+TGG + chr1.4:66085731-66085750 MS.gene69913:CDS 40.0%
TGGATCAGTGAGAACTAACT+CGG - chr1.4:66086873-66086892 None:intergenic 40.0%
TTTGCACATTTGATCCATCG+AGG - chr1.4:66087534-66087553 None:intergenic 40.0%
! ACTGAACTTGTGTTTCAGGT+GGG + chr1.4:66088501-66088520 MS.gene69913:intron 40.0%
! GATCCAGCTAAAGGTATGAA+AGG + chr1.4:66086887-66086906 MS.gene69913:CDS 40.0%
!! AAAGTTGATGCCCTTGTTTC+TGG + chr1.4:66087128-66087147 MS.gene69913:CDS 40.0%
!! ATTCTCTTCCGCCTACTTTT+AGG + chr1.4:66087058-66087077 MS.gene69913:intron 40.0%
!! CTTGTTTCTGGTATAGGAAC+CGG + chr1.4:66087140-66087159 MS.gene69913:CDS 40.0%
!! TGGAAACACTGGTATTGGTT+TGG + chr1.4:66086754-66086773 MS.gene69913:CDS 40.0%
!! TGGTATTGGTTTGGCATTCA+TGG + chr1.4:66086763-66086782 MS.gene69913:CDS 40.0%
!!! GTCTTTTTTCCCTCTCTTCT+TGG + chr1.4:66088152-66088171 MS.gene69913:intron 40.0%
AAACTACTGGACCAGAGATC+TGG + chr1.4:66087090-66087109 MS.gene69913:CDS 45.0%
AAGACTCATTGAAGCAGGCA+TGG - chr1.4:66086819-66086838 None:intergenic 45.0%
AATCTTAATTGCAGCGGCTG+CGG - chr1.4:66088544-66088563 None:intergenic 45.0%
AGATAACGCTCTCCAAAGCT+CGG - chr1.4:66088779-66088798 None:intergenic 45.0%
AGTATCACCTTCACCATTCG+GGG + chr1.4:66087481-66087500 MS.gene69913:intron 45.0%
ATTGCAGATGCTGAGGAGAA+AGG + chr1.4:66086433-66086452 MS.gene69913:CDS 45.0%
CACCTGAAACACAAGTTCAG+TGG - chr1.4:66088502-66088521 None:intergenic 45.0%
CACTGAACTTGTGTTTCAGG+TGG + chr1.4:66088500-66088519 MS.gene69913:intron 45.0%
CAGGGATTTCACTTTGGACT+TGG + chr1.4:66086308-66086327 MS.gene69913:intron 45.0%
CATGTGCTGGAGTCCATAAT+TGG + chr1.4:66088672-66088691 MS.gene69913:intron 45.0%
CGGTTCCTATACCAGAAACA+AGG - chr1.4:66087142-66087161 None:intergenic 45.0%
CTCTCAAGACTCATTGAAGC+AGG - chr1.4:66086824-66086843 None:intergenic 45.0%
CTGTCTTTGACACTAGAGCA+AGG - chr1.4:66085759-66085778 None:intergenic 45.0%
CTTGCTCTAGTGTCAAAGAC+AGG + chr1.4:66085757-66085776 MS.gene69913:CDS 45.0%
GAAAGTCCAGTATTGTCTGG+AGG + chr1.4:66087365-66087384 MS.gene69913:CDS 45.0%
GCTCCTTTCATACCTTTAGC+TGG - chr1.4:66086893-66086912 None:intergenic 45.0%
GGTTCCACACCATATAGCTA+AGG - chr1.4:66087341-66087360 None:intergenic 45.0%
GTTCTCACTGATCCAGCTAA+AGG + chr1.4:66086878-66086897 MS.gene69913:CDS 45.0%
TAGCATGATTGCAGATGCTG+AGG + chr1.4:66086426-66086445 MS.gene69913:CDS 45.0%
TTCCACTAGTAGGCTCAATG+AGG - chr1.4:66086739-66086758 None:intergenic 45.0%
! ACTAACACCTTTGGGTTTGC+AGG - chr1.4:66086983-66087002 None:intergenic 45.0%
! AGAACCATTCTTCGCGCTTT+TGG + chr1.4:66086845-66086864 MS.gene69913:CDS 45.0%
! AGATCTGGAAAAGCTCTGGT+GGG + chr1.4:66087105-66087124 MS.gene69913:CDS 45.0%
! CTGAACTTGTGTTTCAGGTG+GGG + chr1.4:66088502-66088521 MS.gene69913:intron 45.0%
! TCTTATGAGGGCCTTGTACA+TGG - chr1.4:66087904-66087923 None:intergenic 45.0%
! TTTCAGGTGGGGATATCATC+TGG + chr1.4:66088513-66088532 MS.gene69913:intron 45.0%
!! AAGATCCAAGGTATTGGTGC+TGG + chr1.4:66087920-66087939 MS.gene69913:CDS 45.0%
!! GATGCCCTTGTTTCTGGTAT+AGG + chr1.4:66087134-66087153 MS.gene69913:CDS 45.0%
!!! TTTTTTATATAAAAATATGA+TGG + chr1.4:66088039-66088058 MS.gene69913:intron 5.0%
AAGGTCCCACGTAGGTAGTT+TGG - chr1.4:66086356-66086375 None:intergenic 50.0%
CAAGGCCCTCATAAGATCCA+AGG + chr1.4:66087908-66087927 MS.gene69913:intron 50.0%
CCAGAGATCTGGAAAAGCTC+TGG + chr1.4:66087101-66087120 MS.gene69913:CDS 50.0%
GAGCCTACTAGTGGAAACAC+TGG + chr1.4:66086743-66086762 MS.gene69913:CDS 50.0%
GATAACGCTCTCCAAAGCTC+GGG - chr1.4:66088778-66088797 None:intergenic 50.0%
GCAAAGAAGCCGGAAAATGC+TGG + chr1.4:66088564-66088583 MS.gene69913:CDS 50.0%
GCAATTGACATCTCCCCGAA+TGG - chr1.4:66087497-66087516 None:intergenic 50.0%
GCATTCATGGCAGCTGCTAA+GGG + chr1.4:66086776-66086795 MS.gene69913:CDS 50.0%
GCCAACCAAACTACCTACGT+GGG + chr1.4:66086348-66086367 MS.gene69913:intron 50.0%
GGTTTCCCTCCAGACAATAC+TGG - chr1.4:66087374-66087393 None:intergenic 50.0%
GTAGGCGGAAGAGAATGAGT+TGG - chr1.4:66087054-66087073 None:intergenic 50.0%
GTATTGTCTGGAGGGAAACC+TGG + chr1.4:66087374-66087393 MS.gene69913:CDS 50.0%
GTCCTCATTGAGCCTACTAG+TGG + chr1.4:66086734-66086753 MS.gene69913:CDS 50.0%
TCCCACGTAGGTAGTTTGGT+TGG - chr1.4:66086352-66086371 None:intergenic 50.0%
TGAAGCCAGCACCAATACCT+TGG - chr1.4:66087928-66087947 None:intergenic 50.0%
TGGCTTCATTCCTGGTGTTC+TGG + chr1.4:66087940-66087959 MS.gene69913:CDS 50.0%
TGGTATAGGAACCGGAGGTA+CGG + chr1.4:66087148-66087167 MS.gene69913:CDS 50.0%
! CCAGAGCTTTTCCAGATCTC+TGG - chr1.4:66087104-66087123 None:intergenic 50.0%
! GAGATCTGGAAAAGCTCTGG+TGG + chr1.4:66087104-66087123 MS.gene69913:CDS 50.0%
!! ATTGGTGCTGGCTTCATTCC+TGG + chr1.4:66087932-66087951 MS.gene69913:CDS 50.0%
!! CAGGTTGTTTTCCCGAGCTT+TGG + chr1.4:66088764-66088783 MS.gene69913:intron 50.0%
!! GTTTCTGGTATAGGAACCGG+AGG + chr1.4:66087143-66087162 MS.gene69913:CDS 50.0%
AGCACCTGTTACCGTACCTC+CGG - chr1.4:66087162-66087181 None:intergenic 55.0%
CGCCAACCAAACTACCTACG+TGG + chr1.4:66086347-66086366 MS.gene69913:intron 55.0%
GACATCTCCCCGAATGGTGA+AGG - chr1.4:66087491-66087510 None:intergenic 55.0%
GGCATTCATGGCAGCTGCTA+AGG + chr1.4:66086775-66086794 MS.gene69913:CDS 55.0%
GTGGCGTCACCAAGAAGAGA+GGG - chr1.4:66088164-66088183 None:intergenic 55.0%
GTTGGCGAGCTAACAGACAC+TGG - chr1.4:66086334-66086353 None:intergenic 55.0%
TGTGGCGTCACCAAGAAGAG+AGG - chr1.4:66088165-66088184 None:intergenic 55.0%
! GGCACCAAAAGCGCGAAGAA+TGG - chr1.4:66086852-66086871 None:intergenic 55.0%
! GGAACCGGAGGTACGGTAAC+AGG + chr1.4:66087155-66087174 MS.gene69913:CDS 60.0%
! GGAGGTACGGTAACAGGTGC+TGG + chr1.4:66087161-66087180 MS.gene69913:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 66085492 66088859 66085492 ID=MS.gene69913
chr1.4 mRNA 66085492 66088859 66085492 ID=MS.gene69913.t1;Parent=MS.gene69913
chr1.4 exon 66085492 66085533 66085492 ID=MS.gene69913.t1.exon1;Parent=MS.gene69913.t1
chr1.4 CDS 66085492 66085533 66085492 ID=cds.MS.gene69913.t1;Parent=MS.gene69913.t1
chr1.4 exon 66085669 66085778 66085669 ID=MS.gene69913.t1.exon2;Parent=MS.gene69913.t1
chr1.4 CDS 66085669 66085778 66085669 ID=cds.MS.gene69913.t1;Parent=MS.gene69913.t1
chr1.4 exon 66086417 66086474 66086417 ID=MS.gene69913.t1.exon3;Parent=MS.gene69913.t1
chr1.4 CDS 66086417 66086474 66086417 ID=cds.MS.gene69913.t1;Parent=MS.gene69913.t1
chr1.4 exon 66086731 66086994 66086731 ID=MS.gene69913.t1.exon4;Parent=MS.gene69913.t1
chr1.4 CDS 66086731 66086994 66086731 ID=cds.MS.gene69913.t1;Parent=MS.gene69913.t1
chr1.4 exon 66087080 66087217 66087080 ID=MS.gene69913.t1.exon5;Parent=MS.gene69913.t1
chr1.4 CDS 66087080 66087217 66087080 ID=cds.MS.gene69913.t1;Parent=MS.gene69913.t1
chr1.4 exon 66087344 66087395 66087344 ID=MS.gene69913.t1.exon6;Parent=MS.gene69913.t1
chr1.4 CDS 66087344 66087395 66087344 ID=cds.MS.gene69913.t1;Parent=MS.gene69913.t1
chr1.4 exon 66087912 66087991 66087912 ID=MS.gene69913.t1.exon7;Parent=MS.gene69913.t1
chr1.4 CDS 66087912 66087991 66087912 ID=cds.MS.gene69913.t1;Parent=MS.gene69913.t1
chr1.4 exon 66088368 66088427 66088368 ID=MS.gene69913.t1.exon8;Parent=MS.gene69913.t1
chr1.4 CDS 66088368 66088427 66088368 ID=cds.MS.gene69913.t1;Parent=MS.gene69913.t1
chr1.4 exon 66088519 66088599 66088519 ID=MS.gene69913.t1.exon9;Parent=MS.gene69913.t1
chr1.4 CDS 66088519 66088599 66088519 ID=cds.MS.gene69913.t1;Parent=MS.gene69913.t1
chr1.4 exon 66088767 66088859 66088767 ID=MS.gene69913.t1.exon10;Parent=MS.gene69913.t1
chr1.4 CDS 66088767 66088859 66088767 ID=cds.MS.gene69913.t1;Parent=MS.gene69913.t1
Gene Sequence

>MS.gene69913

ATGGCGGATGACAAGTTAACCATTGCTAAAGATGTCACTGAAGTAAGTTACTATGTTTACATAATCAACATCACTTTTTTTTTTTTTTGGATCTATGTAATCAAACATTTTTACTTTTTTATTTTTTACATATGTTGATATACTTCTATTGATTTATTTATTTTTTGAAATGTACAGTTGATTGGTAAAACTCCACTGGTATATCTCAATCATGTCGTGGATGGTTGTGTTGCACAAATTGCTGCAAAGCTAGAAATGATGGAACCTTGCTCTAGTGTCAAAGACAGGTATATTGATTTCTTCTTTCTGAGATTTTTATTTTTTTTGATAGATATAGTTGCATATGAAACAAAATTAGTTTTGTATTGTTTAATGTGGTAAGTTAGTTGTGATTAGTTGTAGTACCTTAGAATCATTATATAAAGTGATCATACACTTATCTGTAATCAACTTCTTCATTAAATCAATTCCAAAATCAATCTTTCTATCATTTTATCTTTTTTGTTGGGCTCTAAATTTGCTAGATAAGTTTCCCTACGATTCTCTAGATTTTCTGCTTGACTATAGAAATGTTTTTGACACTGTTGTTTGTTTTGTTGATAATGAGATTGATTTCAATTGGTTTAAGTTGGAATCTGATTATGAGATCATTACAATTGGCATTATGGAACATATAATTTTGGTGTTGAAGTTGCATTATTAATGTCCATGACTTAATTCTGTTTCATATGCCAAAAGATCTATTCTGAATGTTCGTGTTTTTTTTTTTTTTTTTGGGTAGACAAATGTTAGTAAGTTAGTGGTTACATTAGTTTTCAGGGATTTCACTTTGGACTTGGCCAGTGTCTGTTAGCTCGCCAACCAAACTACCTACGTGGGACCTTAATGTTTTTTAGTTGCTATATAATTCTTTCATTTGATGCAGGATAGGATATAGCATGATTGCAGATGCTGAGGAGAAAGGACTCATTAGACCGCAAGAAGTTAGTTTTCCTTCTTGATATTTAATTCATGATGTACATACTCTTCACATTGCATTAAAACTTCCTTCTACTTACTCTTTTGACCAACTTTAGTAGCCGCATTAAGAATAAGTCATTCAGTTTTAATTGAGAGTCATTATCACTCTCAAATTTTAAATCGTTTACTTAGGTTGGTTTTGTGTGGTACTTAGACCATTGATTATCAAATAAGAGATGAAATTCACAAGGTTAATAATTTTCGTTCTTCATTTTGCAGAGTGTCCTCATTGAGCCTACTAGTGGAAACACTGGTATTGGTTTGGCATTCATGGCAGCTGCTAAGGGCTATAAACTTATTATAACCATGCCTGCTTCAATGAGTCTTGAGAGAAGAACCATTCTTCGCGCTTTTGGTGCCGAGTTAGTTCTCACTGATCCAGCTAAAGGTATGAAAGGAGCTGTTCAGAAAGCTGAAGAGATATTAGCAAAGACTCCCAATGCTTACATTCTTCAGCAATTTGAAAATCCTGCAAACCCAAAGGTGTTAGTTGTGTCAATGTGTTATTTTTAGAGAATCACTTGGTTGGATCGAATTAACCAACTCATTCTCTTCCGCCTACTTTTAGGTTCACTATGAAACTACTGGACCAGAGATCTGGAAAAGCTCTGGTGGGAAAGTTGATGCCCTTGTTTCTGGTATAGGAACCGGAGGTACGGTAACAGGTGCTGGAAAATATTTGAAAGAGCAAAACCCTGATATTAAGGTTAGGAATATGATTCTCTAACTGTATAATATTACCTTCTATAAATTTCTAGGCATGTTTCTTTTGCAAGTTTTTATTTTTTCTAATATTTCTTTGTTTTGCTTACAATATATTTTTTTTCCTTAGCTATATGGTGTGGAACCACTTGAAAGTCCAGTATTGTCTGGAGGGAAACCTGGTGAGTTTTCCTTTTTATCCTTTATTTCTATTGCAAGTTAAATTCATATAATTGATCTTAAGTTCCCTAATGCACATTGAGGAAAAGTATCACCTTCACCATTCGGGGAGATGTCAATTGCTGACAGTTTATTTGCCTCGATGGATCAAATGTGCAAATACTGTCACTGATTGTTACTGCCTCGATGATTATATGCACTAGTACATAATATGCCCACTTCATGAGTACTTGTAAAATCATGGATTCTGATTTCTCTGTGGTACTAACTACTGAGTACTGAATAAGTAGTAAGCAAGTCAATACCATTTTTCTTGGAAATCAAAACGGTATTGATTACGATTTTCCTTCTCACTTTTGCTTTGTTATATCCAACAAGAAAAAAGTTTTATTAACTTTTCACTGTTTATTTTTGTACATTACTTTGTTATTTGAATGGCTGTAGTGAGATTTATTAAATGACTTCCCTCTTCTATGTATCATTCCCCTGACAAACGCATGATATTTTCCATGTACAAGGCCCTCATAAGATCCAAGGTATTGGTGCTGGCTTCATTCCTGGTGTTCTGGATGTTGATTTGCTTGATGAAGTAATCCAAGTAAGGCATGAATCTTTTGATGATATATATTCACTTAAATAAATATATTTTTTATATAAAAATATGATGGACCAATTGTACTCCCTTCAATAATAAAGTTTAAGTAAAAAAAATGTAGCTGTCCTTTTGGTTAACTTATGAGTATGCAAGCTATTGCATTGTCTTTTTTCCCTCTCTTCTTGGTGACGCCACATTATGCAAATTCACGCACTTACTATTCATTCATCGTTGGGAAAGATGGAAAGTACATTAATTCATTTACTACGAAGACGCATGTTTTACTTGTTTAATATTCGCCGAATGTTTGTATATTCTATTAGTTCTATGCGCTATAGTCCATAAATAACTGGCAACTCTTACTTTTGTGTTTTTGTAGATATCCAGCGAAGAAGCTATTGAAACTGCTAAACTTCTTGCATTAAAAGAAGGTTTGCTGGTAAGTTATCATCTTTTGTTAATTGCATCATTTGAAGTATCTTTCCATTTTCGAATGATATGCTATTTTTACCACTGAACTTGTGTTTCAGGTGGGGATATCATCTGGTGCTGCCGCAGCCGCTGCAATTAAGATTGCAAAGAAGCCGGAAAATGCTGGAAAACTCATTGTTGTAAGTTTATCATTTGATTATCTGCTATTAAATATTCTTCTAAAGATAGCTTAAATGTAATATCAACTGAATCATGTGCTGGAGTCCATAATTGGCCATATTAGAGTTTCTCTCATTCAATATCACTAAAATTATTATATTGTTGCACTTATTCGATACATATACAGGTTGTTTTCCCGAGCTTTGGAGAGCGTTATCTATCATCTGTGCTCTTTGAATCAGTGAAGCGAGAAGCCGAAAACATGATCTTTGAGCATTGA

Protein sequence

>MS.gene69913.t1

MADDKLTIAKDVTELIGKTPLVYLNHVVDGCVAQIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPQESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERRTILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYILQQFENPANPKVHYETTGPEIWKSSGGKVDALVSGIGTGGTVTGAGKYLKEQNPDIKLYGVEPLESPVLSGGKPGPHKIQGIGAGFIPGVLDVDLLDEVIQISSEEAIETAKLLALKEGLLVGISSGAAAAAAIKIAKKPENAGKLIVVVFPSFGERYLSSVLFESVKREAENMIFEH