Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058767.t1 | RHN65210.1 | 81.6 | 451 | 51 | 5 | 36 | 461 | 22 | 465 | 9.10E-210 | 739.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058767.t1 | Q84R27 | 32.7 | 171 | 112 | 1 | 239 | 406 | 11 | 181 | 1.2e-16 | 89.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058767.t1 | A0A072UTW5 | 81.6 | 451 | 51 | 5 | 36 | 461 | 28 | 471 | 6.5e-210 | 739.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene058767.t1 | TF | B3 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene058767 | MS.gene53232 | 0.808393 | 3.17E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058767.t1 | MTR_3g005495 | 81.278 | 454 | 53 | 5 | 36 | 464 | 28 | 474 | 0.0 | 738 |
MS.gene058767.t1 | MTR_3g005495 | 50.633 | 237 | 104 | 4 | 16 | 242 | 238 | 471 | 2.11e-66 | 221 |
MS.gene058767.t1 | MTR_3g005460 | 63.301 | 515 | 133 | 8 | 1 | 461 | 1 | 513 | 0.0 | 610 |
MS.gene058767.t1 | MTR_3g005420 | 60.819 | 513 | 149 | 8 | 1 | 461 | 20 | 532 | 0.0 | 576 |
MS.gene058767.t1 | MTR_3g005420 | 52.918 | 257 | 97 | 3 | 16 | 249 | 284 | 539 | 1.88e-80 | 259 |
MS.gene058767.t1 | MTR_3g005420 | 60.285 | 491 | 152 | 9 | 1 | 461 | 1 | 478 | 0.0 | 538 |
MS.gene058767.t1 | MTR_3g005440 | 53.580 | 433 | 119 | 8 | 35 | 418 | 34 | 433 | 1.06e-139 | 408 |
MS.gene058767.t1 | MTR_3g005440 | 52.941 | 204 | 68 | 2 | 16 | 197 | 237 | 434 | 1.97e-60 | 204 |
MS.gene058767.t1 | MTR_5g070440 | 56.618 | 272 | 94 | 3 | 1 | 249 | 1 | 271 | 1.97e-95 | 289 |
MS.gene058767.t1 | MTR_5g070440 | 50.602 | 249 | 83 | 5 | 253 | 461 | 16 | 264 | 8.55e-73 | 231 |
MS.gene058767.t1 | MTR_3g005490 | 57.414 | 263 | 97 | 4 | 1 | 249 | 1 | 262 | 4.76e-91 | 278 |
MS.gene058767.t1 | MTR_3g005490 | 52.697 | 241 | 81 | 6 | 253 | 461 | 16 | 255 | 9.27e-73 | 230 |
MS.gene058767.t1 | MTR_3g005480 | 55.303 | 264 | 102 | 4 | 1 | 249 | 1 | 263 | 1.21e-86 | 266 |
MS.gene058767.t1 | MTR_3g005480 | 48.963 | 241 | 91 | 5 | 253 | 461 | 16 | 256 | 5.33e-68 | 218 |
MS.gene058767.t1 | MTR_1g034240 | 43.478 | 115 | 59 | 1 | 258 | 372 | 7 | 115 | 3.58e-24 | 104 |
MS.gene058767.t1 | MTR_1g034240 | 42.202 | 109 | 62 | 1 | 21 | 128 | 7 | 115 | 1.62e-22 | 100 |
MS.gene058767.t1 | MTR_1g015350 | 33.913 | 230 | 91 | 6 | 1 | 227 | 1 | 172 | 3.89e-22 | 93.6 |
MS.gene058767.t1 | MTR_1g015350 | 35.135 | 148 | 52 | 6 | 301 | 442 | 58 | 167 | 3.50e-14 | 70.9 |
MS.gene058767.t1 | MTR_4g068320 | 40.000 | 115 | 61 | 2 | 255 | 369 | 3 | 109 | 1.05e-20 | 94.4 |
MS.gene058767.t1 | MTR_4g068320 | 38.182 | 110 | 68 | 0 | 18 | 127 | 3 | 112 | 5.62e-20 | 92.4 |
MS.gene058767.t1 | MTR_3g098790 | 28.571 | 301 | 150 | 11 | 14 | 251 | 6 | 304 | 1.43e-20 | 92.8 |
MS.gene058767.t1 | MTR_3g098790 | 39.623 | 106 | 58 | 1 | 257 | 362 | 12 | 111 | 8.41e-17 | 81.6 |
MS.gene058767.t1 | MTR_3g061310 | 26.966 | 267 | 141 | 5 | 21 | 235 | 12 | 276 | 1.85e-20 | 91.7 |
MS.gene058767.t1 | MTR_3g061310 | 34.211 | 114 | 67 | 2 | 258 | 371 | 12 | 117 | 1.18e-14 | 74.7 |
MS.gene058767.t1 | MTR_8g103940 | 22.453 | 481 | 273 | 14 | 35 | 459 | 53 | 489 | 4.21e-20 | 93.2 |
MS.gene058767.t1 | MTR_8g103940 | 29.825 | 114 | 74 | 1 | 258 | 371 | 39 | 146 | 5.26e-13 | 71.2 |
MS.gene058767.t1 | MTR_1g034210 | 39.130 | 115 | 62 | 1 | 258 | 372 | 7 | 113 | 7.33e-20 | 90.5 |
MS.gene058767.t1 | MTR_1g034210 | 41.667 | 108 | 62 | 1 | 21 | 128 | 7 | 113 | 1.22e-18 | 87.0 |
MS.gene058767.t1 | MTR_1g034210 | 39.130 | 115 | 62 | 1 | 258 | 372 | 7 | 113 | 1.57e-19 | 90.5 |
MS.gene058767.t1 | MTR_1g034210 | 41.667 | 108 | 62 | 1 | 21 | 128 | 7 | 113 | 2.49e-18 | 86.7 |
MS.gene058767.t1 | MTR_5g044670 | 26.074 | 326 | 189 | 9 | 21 | 341 | 16 | 294 | 2.70e-19 | 89.0 |
MS.gene058767.t1 | MTR_5g044670 | 34.454 | 119 | 72 | 1 | 244 | 362 | 2 | 114 | 4.05e-16 | 79.7 |
MS.gene058767.t1 | MTR_7g050710 | 35.294 | 136 | 80 | 2 | 20 | 147 | 12 | 147 | 8.39e-19 | 87.4 |
MS.gene058767.t1 | MTR_7g050710 | 33.645 | 107 | 65 | 1 | 257 | 363 | 12 | 112 | 4.93e-13 | 70.5 |
MS.gene058767.t1 | MTR_3g061320 | 43.000 | 100 | 55 | 1 | 20 | 119 | 11 | 108 | 2.35e-18 | 85.5 |
MS.gene058767.t1 | MTR_3g061320 | 36.792 | 106 | 59 | 2 | 257 | 362 | 11 | 108 | 1.10e-12 | 68.6 |
MS.gene058767.t1 | MTR_7g050560 | 36.893 | 103 | 65 | 0 | 20 | 122 | 12 | 114 | 3.35e-18 | 85.5 |
MS.gene058767.t1 | MTR_7g050560 | 36.792 | 106 | 61 | 1 | 257 | 362 | 12 | 111 | 3.83e-15 | 76.6 |
MS.gene058767.t1 | MTR_7g050580 | 35.135 | 111 | 72 | 0 | 9 | 119 | 1 | 111 | 5.83e-18 | 85.1 |
MS.gene058767.t1 | MTR_7g050580 | 36.290 | 124 | 68 | 2 | 257 | 375 | 12 | 129 | 3.99e-17 | 82.4 |
MS.gene058767.t1 | MTR_3g061350 | 37.500 | 112 | 68 | 1 | 21 | 132 | 12 | 121 | 6.18e-18 | 84.3 |
MS.gene058767.t1 | MTR_3g061350 | 35.088 | 114 | 66 | 2 | 258 | 371 | 12 | 117 | 2.12e-14 | 73.9 |
MS.gene058767.t1 | MTR_3g061290 | 41.000 | 100 | 57 | 1 | 20 | 119 | 11 | 108 | 1.56e-17 | 81.3 |
MS.gene058767.t1 | MTR_3g061290 | 35.652 | 115 | 66 | 2 | 257 | 371 | 11 | 117 | 1.25e-14 | 72.8 |
MS.gene058767.t1 | MTR_3g061370 | 26.374 | 273 | 148 | 7 | 17 | 238 | 5 | 275 | 1.67e-16 | 80.1 |
MS.gene058767.t1 | MTR_3g061370 | 34.188 | 117 | 69 | 2 | 255 | 371 | 6 | 114 | 1.55e-13 | 71.2 |
MS.gene058767.t1 | MTR_7g050720 | 37.000 | 100 | 63 | 0 | 20 | 119 | 9 | 108 | 2.42e-16 | 80.1 |
MS.gene058767.t1 | MTR_7g050720 | 32.847 | 137 | 83 | 2 | 257 | 386 | 9 | 143 | 7.36e-15 | 75.9 |
MS.gene058767.t1 | MTR_7g050590 | 35.433 | 127 | 73 | 4 | 37 | 155 | 2 | 127 | 3.36e-16 | 79.3 |
MS.gene058767.t1 | MTR_7g050590 | 37.079 | 89 | 50 | 1 | 274 | 362 | 2 | 84 | 1.02e-11 | 65.9 |
MS.gene058767.t1 | MTR_3g061330 | 40.000 | 100 | 58 | 1 | 21 | 120 | 12 | 109 | 6.59e-16 | 77.8 |
MS.gene058767.t1 | MTR_3g061330 | 36.134 | 119 | 67 | 3 | 258 | 375 | 12 | 122 | 1.20e-13 | 71.2 |
MS.gene058767.t1 | MTR_1g035460 | 24.916 | 297 | 131 | 8 | 37 | 249 | 2 | 290 | 1.42e-15 | 78.6 |
MS.gene058767.t1 | MTR_7g050640 | 33.663 | 101 | 67 | 0 | 14 | 114 | 6 | 106 | 2.37e-14 | 69.7 |
MS.gene058767.t1 | MTR_7g050640 | 36.957 | 92 | 58 | 0 | 257 | 348 | 12 | 103 | 5.24e-12 | 63.2 |
MS.gene058767.t1 | MTR_3g061340 | 38.182 | 110 | 65 | 2 | 21 | 129 | 12 | 119 | 2.75e-14 | 73.6 |
MS.gene058767.t1 | MTR_3g061340 | 26.336 | 262 | 133 | 8 | 258 | 461 | 12 | 271 | 8.98e-13 | 68.9 |
MS.gene058767.t1 | MTR_1g035480 | 32.479 | 117 | 70 | 3 | 257 | 373 | 16 | 123 | 2.37e-13 | 68.9 |
MS.gene058767.t1 | MTR_3g061220 | 37.000 | 100 | 48 | 2 | 21 | 120 | 12 | 96 | 3.27e-13 | 66.6 |
MS.gene058767.t1 | MTR_3g061220 | 33.043 | 115 | 56 | 3 | 258 | 372 | 12 | 105 | 3.93e-12 | 63.5 |
MS.gene058767.t1 | MTR_1g021290 | 35.870 | 92 | 58 | 1 | 257 | 348 | 27 | 117 | 2.08e-12 | 68.6 |
MS.gene058767.t1 | MTR_1g108780 | 34.524 | 84 | 55 | 0 | 36 | 119 | 12 | 95 | 3.90e-12 | 68.6 |
MS.gene058767.t1 | MTR_1g035500 | 30.469 | 128 | 77 | 4 | 246 | 373 | 16 | 131 | 1.80e-11 | 63.5 |
MS.gene058767.t1 | MTR_1g021320 | 36.957 | 92 | 56 | 2 | 257 | 348 | 183 | 272 | 3.96e-11 | 65.9 |
MS.gene058767.t1 | MTR_1g021330 | 33.696 | 92 | 61 | 0 | 257 | 348 | 25 | 116 | 4.00e-11 | 65.1 |
MS.gene058767.t1 | MTR_6g043890 | 37.895 | 95 | 52 | 2 | 257 | 347 | 14 | 105 | 4.14e-11 | 64.7 |
MS.gene058767.t1 | MTR_1g021400 | 33.696 | 92 | 61 | 0 | 257 | 348 | 29 | 120 | 4.28e-11 | 64.7 |
MS.gene058767.t1 | MTR_1g033740 | 31.776 | 107 | 64 | 3 | 257 | 363 | 21 | 118 | 5.63e-11 | 62.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058767.t1 | AT3G18990 | 41.905 | 105 | 55 | 1 | 258 | 362 | 6 | 104 | 2.26e-20 | 92.4 |
MS.gene058767.t1 | AT3G18990 | 40.404 | 99 | 59 | 0 | 21 | 119 | 6 | 104 | 1.58e-19 | 90.1 |
MS.gene058767.t1 | AT3G18990 | 41.905 | 105 | 55 | 1 | 258 | 362 | 6 | 104 | 3.13e-20 | 92.4 |
MS.gene058767.t1 | AT3G18990 | 40.404 | 99 | 59 | 0 | 21 | 119 | 6 | 104 | 2.17e-19 | 90.1 |
MS.gene058767.t1 | AT4G01580 | 39.344 | 122 | 71 | 1 | 256 | 374 | 28 | 149 | 3.72e-20 | 88.6 |
MS.gene058767.t1 | AT4G01580 | 36.449 | 107 | 68 | 0 | 13 | 119 | 22 | 128 | 1.12e-17 | 81.6 |
MS.gene058767.t1 | AT3G18960 | 37.838 | 111 | 69 | 0 | 239 | 349 | 11 | 121 | 1.48e-19 | 87.0 |
MS.gene058767.t1 | AT3G18960 | 35.043 | 117 | 73 | 1 | 3 | 119 | 15 | 128 | 9.27e-18 | 81.6 |
MS.gene058767.t1 | AT3G18960 | 37.838 | 111 | 69 | 0 | 239 | 349 | 11 | 121 | 1.83e-19 | 87.0 |
MS.gene058767.t1 | AT3G18960 | 35.043 | 117 | 73 | 1 | 3 | 119 | 15 | 128 | 2.04e-17 | 81.3 |
MS.gene058767.t1 | AT1G49475 | 38.136 | 118 | 72 | 1 | 12 | 129 | 25 | 141 | 1.83e-17 | 80.9 |
MS.gene058767.t1 | AT1G49475 | 33.103 | 145 | 89 | 3 | 228 | 371 | 3 | 140 | 2.55e-15 | 74.7 |
MS.gene058767.t1 | AT3G18960 | 40.260 | 77 | 46 | 0 | 273 | 349 | 8 | 84 | 5.06e-14 | 70.5 |
MS.gene058767.t1 | AT3G18960 | 36.047 | 86 | 55 | 0 | 34 | 119 | 6 | 91 | 3.57e-13 | 68.2 |
MS.gene058767.t1 | AT1G26680 | 21.318 | 516 | 312 | 19 | 20 | 452 | 14 | 518 | 1.14e-12 | 70.9 |
MS.gene058767.t1 | AT1G26680 | 22.164 | 379 | 255 | 14 | 20 | 370 | 14 | 380 | 1.37e-12 | 70.5 |
MS.gene058767.t1 | AT1G26680 | 22.164 | 379 | 255 | 14 | 20 | 370 | 14 | 380 | 1.48e-12 | 70.5 |
MS.gene058767.t1 | AT1G26680 | 21.318 | 516 | 312 | 19 | 20 | 452 | 14 | 518 | 2.05e-12 | 70.1 |
MS.gene058767.t1 | AT1G26680 | 22.905 | 358 | 239 | 14 | 20 | 350 | 14 | 361 | 4.03e-11 | 65.9 |
MS.gene058767.t1 | AT2G24645 | 22.162 | 370 | 265 | 12 | 18 | 377 | 3 | 359 | 6.88e-11 | 64.3 |
Find 103 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GATGAGTTTATAACAAAATT+TGG | 0.100922 | 3.1:-734707 | MS.gene058767:CDS |
ATTGCTCTCCATTGCAATTT+TGG | 0.125157 | 3.1:+732926 | None:intergenic |
ACTGCTTTCCTTGAGAATTT+TGG | 0.150373 | 3.1:+734177 | None:intergenic |
GAATACTATTCTATTTATTA+TGG | 0.217855 | 3.1:-734569 | MS.gene058767:CDS |
TGATGGTCTTACTTGGAAAT+TGG | 0.227158 | 3.1:-733455 | MS.gene058767:CDS |
GGCAGCATCCTTTGATCTTT+TGG | 0.235120 | 3.1:+734406 | None:intergenic |
TATGGCCTTCTTAAAATGTT+TGG | 0.280661 | 3.1:+733660 | None:intergenic |
TACTATTTGTTTGTCATGAA+TGG | 0.295878 | 3.1:+733627 | None:intergenic |
TATGGCTTTCATAAAATGTT+TGG | 0.299040 | 3.1:+735849 | None:intergenic |
CACCACAGTACTATGCTTAT+AGG | 0.300478 | 3.1:+733132 | None:intergenic |
CGATGGTCGTGAGTGGGATA+TGG | 0.308591 | 3.1:-734648 | MS.gene058767:CDS |
AACATTGTTATAAAATCTTC+AGG | 0.326094 | 3.1:+733517 | None:intergenic |
ATGAGTTTATAACAAAATTT+GGG | 0.347730 | 3.1:-734706 | MS.gene058767:CDS |
TTCAAAACTCCGAGGACTAA+TGG | 0.352679 | 3.1:-734461 | MS.gene058767:CDS |
TGCACATCCGCCAAAGGCTT+TGG | 0.356051 | 3.1:+734349 | None:intergenic |
TCCATTGTGTAGTATGTTCC+TGG | 0.362474 | 3.1:-734245 | MS.gene058767:intron |
ATGAATGGGCGAGGGAAGTA+TGG | 0.376143 | 3.1:+733642 | None:intergenic |
CTGTACCTGATGGTCTTACT+TGG | 0.380651 | 3.1:-733462 | MS.gene058767:CDS |
ACGGACAACAATTTGTTAAA+CGG | 0.394532 | 3.1:-732835 | MS.gene058767:CDS |
GTGCTCGGACACTTTATGTT+TGG | 0.397057 | 3.1:+734434 | None:intergenic |
TGGAGCATGAACGGAACCTT+TGG | 0.402900 | 3.1:+734197 | None:intergenic |
ATGATCTGGAGGAGGAAGTA+TGG | 0.403287 | 3.1:+735831 | None:intergenic |
GTGGGAAGTTTCTTGTATAT+CGG | 0.404351 | 3.1:-734156 | MS.gene058767:CDS |
ACTATTTGTTTGTCATGAAT+GGG | 0.410462 | 3.1:+733628 | None:intergenic |
GATGTTTGTTGTACACGTTT+AGG | 0.414968 | 3.1:-732901 | MS.gene058767:CDS |
GGTCGTTCAGGACTGCGATT+GGG | 0.421540 | 3.1:-732880 | MS.gene058767:CDS |
TGTACACGTTTAGGTCGTTC+AGG | 0.427447 | 3.1:-732892 | MS.gene058767:CDS |
AAATGTTTGGAATCTTTCTC+CGG | 0.434011 | 3.1:+735862 | None:intergenic |
TATTTAGATTTCAAGTATGA+AGG | 0.439885 | 3.1:-734542 | MS.gene058767:CDS |
TCCCTTCATATTCGAAAGAC+AGG | 0.440227 | 3.1:+733347 | None:intergenic |
TCTTTCTCCGGCTCCGGCGA+CGG | 0.452971 | 3.1:+735874 | None:intergenic |
AATTTCCAAGTAAGACCATC+AGG | 0.471155 | 3.1:+733457 | None:intergenic |
TCTGTTCCTTGATCCTCACT+TGG | 0.472253 | 3.1:+733175 | None:intergenic |
CAATACTATTCTTTAAGATA+CGG | 0.474788 | 3.1:-733376 | MS.gene058767:CDS |
GTAACTTGTAACACAGCAAC+AGG | 0.476992 | 3.1:+734023 | None:intergenic |
CGACGAAGTTGTAACACAAC+TGG | 0.478088 | 3.1:+732778 | None:intergenic |
AAATTGCAATGGAGAGCAAT+GGG | 0.490520 | 3.1:-732923 | MS.gene058767:CDS |
TTGGAATCTTTCTCCGGCTC+CGG | 0.490863 | 3.1:+735868 | None:intergenic |
TATTGAATTGCAGGCGGAGA+AGG | 0.498005 | 3.1:-733695 | MS.gene058767:intron |
AGCATAATTGATTTCAACCC+TGG | 0.498720 | 3.1:+733207 | None:intergenic |
ATATGTTCCGTCGCCGGAGC+CGG | 0.500331 | 3.1:-735881 | MS.gene058767:CDS |
CAAGGCCTAGGAAAAGGTCC+AGG | 0.503244 | 3.1:-733225 | MS.gene058767:CDS |
AGTGTCCAAGGCCTAGGAAA+AGG | 0.504716 | 3.1:-733231 | MS.gene058767:CDS |
AGGTCGTTCAGGACTGCGAT+TGG | 0.510218 | 3.1:-732881 | MS.gene058767:CDS |
TTTCGTTCCAAAGCCTTTGG+CGG | 0.513757 | 3.1:-734356 | MS.gene058767:CDS |
TTTGGTTCTCCATTAGTCCT+CGG | 0.518425 | 3.1:+734452 | None:intergenic |
TTCCTGTCTTTCGAATATGA+AGG | 0.519724 | 3.1:-733349 | MS.gene058767:CDS |
ATATCCCACTCACGACCATC+GGG | 0.524249 | 3.1:+734650 | None:intergenic |
ATTTAGATTTCAAGTATGAA+GGG | 0.527803 | 3.1:-734541 | MS.gene058767:CDS |
CATATCCCACTCACGACCAT+CGG | 0.533925 | 3.1:+734649 | None:intergenic |
AGATCAAAGGATGCTGCCAA+TGG | 0.538359 | 3.1:-734401 | MS.gene058767:CDS |
TTATAGGTAGAAATAAAAGA+AGG | 0.539979 | 3.1:+733148 | None:intergenic |
TCCTGTCTTTCGAATATGAA+GGG | 0.540870 | 3.1:-733348 | MS.gene058767:CDS |
TATAGGTAGAAATAAAAGAA+GGG | 0.541741 | 3.1:+733149 | None:intergenic |
ACACGTAGTGTCCAAGGCCT+AGG | 0.542974 | 3.1:-733237 | MS.gene058767:intron |
GAGAAGATATGTTCCGTCGC+CGG | 0.544889 | 3.1:-735887 | MS.gene058767:CDS |
GTGGATTCTGTAGATTTGCA+AGG | 0.544893 | 3.1:-734100 | MS.gene058767:CDS |
AAAATTGCAATGGAGAGCAA+TGG | 0.546760 | 3.1:-732924 | MS.gene058767:CDS |
TTGTTTGTCATGAATGGGCG+AGG | 0.546897 | 3.1:+733633 | None:intergenic |
TCAGGACTGCGATTGGGGAA+AGG | 0.546910 | 3.1:-732874 | MS.gene058767:CDS |
GTTAAACGGTGATAAATGCA+AGG | 0.548716 | 3.1:-732821 | MS.gene058767:CDS |
AGGATTCTTTAAATTTGCAA+CGG | 0.549729 | 3.1:-732854 | MS.gene058767:CDS |
AAGGCTTTGGAACGAAAACA+AGG | 0.561637 | 3.1:+734362 | None:intergenic |
ACAAGTTACTGCGTCTCGCA+CGG | 0.562350 | 3.1:-734009 | MS.gene058767:intron |
AAATTGGAATTGAAGAAACG+TGG | 0.566955 | 3.1:-733439 | MS.gene058767:CDS |
GCGACGGAACATATCTTCTC+CGG | 0.567057 | 3.1:+735890 | None:intergenic |
CACTGCTTCCAAAAGATCAA+AGG | 0.568858 | 3.1:-734414 | MS.gene058767:CDS |
AAACAAACACGTAGTGTCCA+AGG | 0.574938 | 3.1:-733243 | MS.gene058767:intron |
TGTTCCTGGTGAATTTGCTA+AGG | 0.578362 | 3.1:-734231 | MS.gene058767:CDS |
GTCGTTCAGGACTGCGATTG+GGG | 0.586295 | 3.1:-732879 | MS.gene058767:CDS |
TCTTACTGCACATCCGCCAA+AGG | 0.591238 | 3.1:+734343 | None:intergenic |
AAGGGAAAACAATCTATCAA+AGG | 0.593937 | 3.1:-734081 | MS.gene058767:CDS |
AATTGGAATTGAAGAAACGT+GGG | 0.594882 | 3.1:-733438 | MS.gene058767:CDS |
AAAATTCTCAAGGAAAGCAG+TGG | 0.599450 | 3.1:-734175 | MS.gene058767:CDS |
TGGATTCTGTAGATTTGCAA+GGG | 0.600149 | 3.1:-734099 | MS.gene058767:CDS |
TGCTGATGATTCACCAAGTG+AGG | 0.601710 | 3.1:-733188 | MS.gene058767:CDS |
ACAACTTTGAGCTGATCAAG+AGG | 0.603297 | 3.1:-734049 | MS.gene058767:CDS |
GATTCACCAAGTGAGGATCA+AGG | 0.604229 | 3.1:-733181 | MS.gene058767:CDS |
GCAGGCGGAGAAGGAAGGTA+GGG | 0.604865 | 3.1:-733686 | MS.gene058767:intron |
TTCATGCTCCAAAATTCTCA+AGG | 0.607610 | 3.1:-734185 | MS.gene058767:CDS |
GCTACCATTACTATTCCCGA+TGG | 0.609181 | 3.1:-734665 | MS.gene058767:CDS |
TGCAGGCGGAGAAGGAAGGT+AGG | 0.610068 | 3.1:-733687 | MS.gene058767:intron |
AATCCACTCGTAATTCGCAT+TGG | 0.611373 | 3.1:+734116 | None:intergenic |
AAGAAACAATGAAGACTCAC+CGG | 0.615286 | 3.1:-735909 | None:intergenic |
TATTCCCGATGGTCGTGAGT+GGG | 0.627663 | 3.1:-734654 | MS.gene058767:CDS |
TGCTCCTTAGCAAATTCACC+AGG | 0.628603 | 3.1:+734227 | None:intergenic |
CTATTCCCGATGGTCGTGAG+TGG | 0.632144 | 3.1:-734655 | MS.gene058767:CDS |
ACGACCATCGGGAATAGTAA+TGG | 0.633705 | 3.1:+734661 | None:intergenic |
AAATTCTCAAGGAAAGCAGT+GGG | 0.637805 | 3.1:-734174 | MS.gene058767:CDS |
CTTATTCATTCAAAACTCCG+AGG | 0.640841 | 3.1:-734469 | MS.gene058767:CDS |
GAATTGCAGGCGGAGAAGGA+AGG | 0.644062 | 3.1:-733691 | MS.gene058767:intron |
ACACCAATGCGAATTACGAG+TGG | 0.647816 | 3.1:-734119 | MS.gene058767:CDS |
GTGAAGCTCCAAAATTGCAA+TGG | 0.649737 | 3.1:-732934 | MS.gene058767:CDS |
TGTTTGTCATGAATGGGCGA+GGG | 0.652999 | 3.1:+733634 | None:intergenic |
AGGCTTTGGAACGAAAACAA+GGG | 0.659531 | 3.1:+734363 | None:intergenic |
GCTACAGTTACTGTACCTGA+TGG | 0.662981 | 3.1:-733472 | MS.gene058767:CDS |
TAAGGAGCATCTGAAGCCAA+AGG | 0.672174 | 3.1:-734213 | MS.gene058767:CDS |
GGAATTGAAGAAACGTGGGG+AGG | 0.674047 | 3.1:-733434 | MS.gene058767:CDS |
AAGGCCTAGGAAAAGGTCCA+GGG | 0.684915 | 3.1:-733224 | MS.gene058767:CDS |
ATGGAACTGAAGAAATGTGG+CGG | 0.686123 | 3.1:-734629 | MS.gene058767:CDS |
TACCTATAAGCATAGTACTG+TGG | 0.687770 | 3.1:-733134 | MS.gene058767:intron |
GATATGGAACTGAAGAAATG+TGG | 0.697083 | 3.1:-734632 | MS.gene058767:CDS |
ATTGGAATTGAAGAAACGTG+GGG | 0.725338 | 3.1:-733437 | MS.gene058767:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TACTTCTTAATTATTATATA+TGG | - | chr3.1:732999-733018 | MS.gene058767:intron | 10.0% |
!! | ATGAGTTTATAACAAAATTT+GGG | - | chr3.1:733966-733985 | MS.gene058767:intron | 15.0% |
!! | ATTAATTATTAGTGTATGTT+TGG | - | chr3.1:733116-733135 | MS.gene058767:intron | 15.0% |
!! | GAATACTATTCTATTTATTA+TGG | - | chr3.1:734103-734122 | MS.gene058767:CDS | 15.0% |
!! | TAGATTCAACTTTATTATTA+AGG | + | chr3.1:733338-733357 | None:intergenic | 15.0% |
!! | TATTTGTTTATAATGTGAAT+TGG | - | chr3.1:734919-734938 | MS.gene058767:intron | 15.0% |
!!! | AAAATTTGATTTTGAAACTT+TGG | - | chr3.1:733151-733170 | MS.gene058767:CDS | 15.0% |
!!! | AAGATTTTATAACAATGTTT+GGG | - | chr3.1:735159-735178 | MS.gene058767:intron | 15.0% |
!!! | ATTTTTGTTACATTGATAAT+AGG | + | chr3.1:733532-733551 | None:intergenic | 15.0% |
!!! | GAATTTTACTTTATAGTATT+TGG | - | chr3.1:734350-734369 | MS.gene058767:CDS | 15.0% |
!! | AACATTGTTATAAAATCTTC+AGG | + | chr3.1:735158-735177 | None:intergenic | 20.0% |
!! | GATGAGTTTATAACAAAATT+TGG | - | chr3.1:733965-733984 | MS.gene058767:intron | 20.0% |
!! | TAGATTTAGAAAACAAGTTA+GGG | + | chr3.1:733076-733095 | None:intergenic | 20.0% |
!! | TATAGGTAGAAATAAAAGAA+GGG | + | chr3.1:735526-735545 | None:intergenic | 20.0% |
!! | TTAGATTTAGAAAACAAGTT+AGG | + | chr3.1:733077-733096 | None:intergenic | 20.0% |
!! | TTATAGGTAGAAATAAAAGA+AGG | + | chr3.1:735527-735546 | None:intergenic | 20.0% |
!!! | AAGCAAATTATTTTATTCAC+TGG | + | chr3.1:734805-734824 | None:intergenic | 20.0% |
!!! | AAGTTTTCTTTTGCAAAAAT+TGG | - | chr3.1:734068-734087 | MS.gene058767:CDS | 20.0% |
!!! | AATTTTGTTATAAACTCATC+TGG | + | chr3.1:733965-733984 | None:intergenic | 20.0% |
!!! | AATTTTTGCAAAAGAAAACT+TGG | + | chr3.1:734069-734088 | None:intergenic | 20.0% |
!!! | ATTTAGATTTCAAGTATGAA+GGG | - | chr3.1:734131-734150 | MS.gene058767:CDS | 20.0% |
!!! | CAATACTATTCTTTAAGATA+CGG | - | chr3.1:735296-735315 | MS.gene058767:intron | 20.0% |
!!! | GAAGATTTTATAACAATGTT+TGG | - | chr3.1:735158-735177 | MS.gene058767:intron | 20.0% |
!!! | TATCTTTTTCTGAATTTGTT+TGG | - | chr3.1:733683-733702 | MS.gene058767:CDS | 20.0% |
!!! | TATTTAGATTTCAAGTATGA+AGG | - | chr3.1:734130-734149 | MS.gene058767:CDS | 20.0% |
! | AATAATAATGAACTCGTATG+TGG | + | chr3.1:734903-734922 | None:intergenic | 25.0% |
! | ACATAATATCATTTACAGAG+AGG | + | chr3.1:733646-733665 | None:intergenic | 25.0% |
! | ACTATTTGTTTGTCATGAAT+GGG | + | chr3.1:735047-735066 | None:intergenic | 25.0% |
! | AGGATTCTTTAAATTTGCAA+CGG | - | chr3.1:735818-735837 | MS.gene058767:intron | 25.0% |
! | AGTAACTAAAAAACCTACAA+CGG | + | chr3.1:734754-734773 | None:intergenic | 25.0% |
! | ATAACTCATCAGTTATACTA+TGG | + | chr3.1:735093-735112 | None:intergenic | 25.0% |
! | CAACGGTTCAAATATTATAA+AGG | + | chr3.1:734737-734756 | None:intergenic | 25.0% |
! | TAACTCATCAGTTATACTAT+GGG | + | chr3.1:735092-735111 | None:intergenic | 25.0% |
! | TACTATTTGTTTGTCATGAA+TGG | + | chr3.1:735048-735067 | None:intergenic | 25.0% |
! | TATAATATTTGAACCGTTGT+AGG | - | chr3.1:734738-734757 | MS.gene058767:intron | 25.0% |
! | TATGGCTTTCATAAAATGTT+TGG | + | chr3.1:732826-732845 | None:intergenic | 25.0% |
!! | ACTATCTCTTTTATATGATC+TGG | + | chr3.1:732858-732877 | None:intergenic | 25.0% |
!!! | AAAAATCATGTTTTGAGTCA+AGG | - | chr3.1:733357-733376 | MS.gene058767:CDS | 25.0% |
!!! | AAACTTAGATTGAGTTGAAT+CGG | - | chr3.1:733287-733306 | MS.gene058767:intron | 25.0% |
!!! | ATGTTTACTTTTGCAACAAA+TGG | - | chr3.1:735261-735280 | MS.gene058767:intron | 25.0% |
!!! | CATGTTTAGAATCATTTTTG+TGG | + | chr3.1:733427-733446 | None:intergenic | 25.0% |
!!! | TTTAGAATCATTTTTGTGGA+AGG | + | chr3.1:733423-733442 | None:intergenic | 25.0% |
AAATTGGAATTGAAGAAACG+TGG | - | chr3.1:735233-735252 | MS.gene058767:intron | 30.0% | |
AAGGGAAAACAATCTATCAA+AGG | - | chr3.1:734591-734610 | MS.gene058767:CDS | 30.0% | |
AATAGGAATAACTTCCAAAG+AGG | + | chr3.1:733515-733534 | None:intergenic | 30.0% | |
AATTGGAATTGAAGAAACGT+GGG | - | chr3.1:735234-735253 | MS.gene058767:intron | 30.0% | |
AGCATTAATATACTGCACAA+GGG | + | chr3.1:735682-735701 | None:intergenic | 30.0% | |
ATAGGAATAACTTCCAAAGA+GGG | + | chr3.1:733514-733533 | None:intergenic | 30.0% | |
CTTATCACTTATTGAATTGC+AGG | - | chr3.1:734968-734987 | MS.gene058767:intron | 30.0% | |
CTTCAACTAAAGTTCTTGTT+TGG | + | chr3.1:733824-733843 | None:intergenic | 30.0% | |
GAGAGTAGTTACTTAAATTG+TGG | - | chr3.1:733468-733487 | MS.gene058767:CDS | 30.0% | |
TATGGCCTTCTTAAAATGTT+TGG | + | chr3.1:735015-735034 | None:intergenic | 30.0% | |
TCTTTAACTGTGAAACTTTG+AGG | - | chr3.1:733596-733615 | MS.gene058767:intron | 30.0% | |
! | AAATGTTTGGAATCTTTCTC+CGG | + | chr3.1:732813-732832 | None:intergenic | 30.0% |
! | ATCTCTTTTATATGATCTGG+AGG | + | chr3.1:732855-732874 | None:intergenic | 30.0% |
! | TGAATTTGTTTGGACATTCA+AGG | - | chr3.1:733693-733712 | MS.gene058767:intron | 30.0% |
! | TTTGTTTCTCCATTAGTACT+TGG | + | chr3.1:735416-735435 | None:intergenic | 30.0% |
!! | ACGGACAACAATTTGTTAAA+CGG | - | chr3.1:735837-735856 | MS.gene058767:CDS | 30.0% |
!! | GGAATCCAAACATTTTAAGA+AGG | - | chr3.1:735007-735026 | MS.gene058767:intron | 30.0% |
!! | TAGTTCTAAGGTTCTCAAAA+TGG | - | chr3.1:733761-733780 | MS.gene058767:intron | 30.0% |
!! | TTAGTGTGTCTTTAGTTCTA+AGG | - | chr3.1:733749-733768 | MS.gene058767:intron | 30.0% |
!!! | AACGAAAACAAGGGTTTTTT+GGG | + | chr3.1:734303-734322 | None:intergenic | 30.0% |
AAAATTCTCAAGGAAAGCAG+TGG | - | chr3.1:734497-734516 | MS.gene058767:CDS | 35.0% | |
AAAATTGCAATGGAGAGCAA+TGG | - | chr3.1:735748-735767 | MS.gene058767:intron | 35.0% | |
AAATTCTCAAGGAAAGCAGT+GGG | - | chr3.1:734498-734517 | MS.gene058767:CDS | 35.0% | |
AAATTGCAATGGAGAGCAAT+GGG | - | chr3.1:735749-735768 | MS.gene058767:intron | 35.0% | |
AATTTCCAAGTAAGACCATC+AGG | + | chr3.1:735218-735237 | None:intergenic | 35.0% | |
ACTCTAACTGTCAAACTTTG+AGG | - | chr3.1:732961-732980 | MS.gene058767:CDS | 35.0% | |
ATAAATGTGTAACCCCTCTT+TGG | - | chr3.1:733498-733517 | MS.gene058767:CDS | 35.0% | |
ATCACTTATTGAATTGCAGG+CGG | - | chr3.1:734971-734990 | MS.gene058767:intron | 35.0% | |
ATTGGAATTGAAGAAACGTG+GGG | - | chr3.1:735235-735254 | MS.gene058767:intron | 35.0% | |
CAACTCATCTGTTACAGTAT+AGG | + | chr3.1:733916-733935 | None:intergenic | 35.0% | |
CAGCATTAATATACTGCACA+AGG | + | chr3.1:735683-735702 | None:intergenic | 35.0% | |
CTCAAAACTCCAAGTACTAA+TGG | - | chr3.1:735404-735423 | MS.gene058767:intron | 35.0% | |
CTTATTCATTCAAAACTCCG+AGG | - | chr3.1:734203-734222 | MS.gene058767:CDS | 35.0% | |
GATATGGAACTGAAGAAATG+TGG | - | chr3.1:734040-734059 | MS.gene058767:CDS | 35.0% | |
GCTATCATCAATGAGCAATA+TGG | - | chr3.1:734778-734797 | MS.gene058767:intron | 35.0% | |
GTCTCTAAACTTCAAAAGAG+AGG | + | chr3.1:733894-733913 | None:intergenic | 35.0% | |
GTGGGAAGTTTCTTGTATAT+CGG | - | chr3.1:734516-734535 | MS.gene058767:CDS | 35.0% | |
GTTAAACGGTGATAAATGCA+AGG | - | chr3.1:735851-735870 | MS.gene058767:CDS | 35.0% | |
TACCTATAAGCATAGTACTG+TGG | - | chr3.1:735538-735557 | MS.gene058767:intron | 35.0% | |
TAGGAATAACTTCCAAAGAG+GGG | + | chr3.1:733513-733532 | None:intergenic | 35.0% | |
TCATCAGTTATACTATGGGA+GGG | + | chr3.1:735088-735107 | None:intergenic | 35.0% | |
TCCTGTCTTTCGAATATGAA+GGG | - | chr3.1:735324-735343 | MS.gene058767:intron | 35.0% | |
TGCGAAAGAAAACACACTTA+GGG | + | chr3.1:734857-734876 | None:intergenic | 35.0% | |
TGGATTCTGTAGATTTGCAA+GGG | - | chr3.1:734573-734592 | MS.gene058767:CDS | 35.0% | |
TTCATGCTCCAAAATTCTCA+AGG | - | chr3.1:734487-734506 | MS.gene058767:CDS | 35.0% | |
TTCCTGTCTTTCGAATATGA+AGG | - | chr3.1:735323-735342 | MS.gene058767:intron | 35.0% | |
TTGCGAAAGAAAACACACTT+AGG | + | chr3.1:734858-734877 | None:intergenic | 35.0% | |
! | ACTGCTTTCCTTGAGAATTT+TGG | + | chr3.1:734498-734517 | None:intergenic | 35.0% |
! | AGCATAATTGATTTCAACCC+TGG | + | chr3.1:735468-735487 | None:intergenic | 35.0% |
! | ATTGCTCTCCATTGCAATTT+TGG | + | chr3.1:735749-735768 | None:intergenic | 35.0% |
! | TCTTTTATATGATCTGGAGG+AGG | + | chr3.1:732852-732871 | None:intergenic | 35.0% |
! | TGATGGTCTTACTTGGAAAT+TGG | - | chr3.1:735217-735236 | MS.gene058767:intron | 35.0% |
!! | GATGTTTGTTGTACACGTTT+AGG | - | chr3.1:735771-735790 | MS.gene058767:intron | 35.0% |
!!! | GAACGAAAACAAGGGTTTTT+TGG | + | chr3.1:734304-734323 | None:intergenic | 35.0% |
!!! | GTTTTTTGGGTTGATTCCAT+TGG | + | chr3.1:734290-734309 | None:intergenic | 35.0% |
!!! | TGAGAATTTTGGAGCATGAA+CGG | + | chr3.1:734487-734506 | None:intergenic | 35.0% |
!!! | TTAGTACTTGGAGTTTTGAG+TGG | + | chr3.1:735404-735423 | None:intergenic | 35.0% |
AAACAAACACGTAGTGTCCA+AGG | - | chr3.1:735429-735448 | MS.gene058767:intron | 40.0% | |
AATCCACTCGTAATTCGCAT+TGG | + | chr3.1:734559-734578 | None:intergenic | 40.0% | |
ACAACTTTGAGCTGATCAAG+AGG | - | chr3.1:734623-734642 | MS.gene058767:CDS | 40.0% | |
ACCAGGAACATACTACACAA+TGG | + | chr3.1:734431-734450 | None:intergenic | 40.0% | |
AGGAACATACTACACAATGG+AGG | + | chr3.1:734428-734447 | None:intergenic | 40.0% | |
ATGGAACTGAAGAAATGTGG+CGG | - | chr3.1:734043-734062 | MS.gene058767:CDS | 40.0% | |
CACCACAGTACTATGCTTAT+AGG | + | chr3.1:735543-735562 | None:intergenic | 40.0% | |
CACTGCTTCCAAAAGATCAA+AGG | - | chr3.1:734258-734277 | MS.gene058767:intron | 40.0% | |
CTCATCAGTTATACTATGGG+AGG | + | chr3.1:735089-735108 | None:intergenic | 40.0% | |
GTGAAGCTCCAAAATTGCAA+TGG | - | chr3.1:735738-735757 | MS.gene058767:intron | 40.0% | |
GTGGATTCTGTAGATTTGCA+AGG | - | chr3.1:734572-734591 | MS.gene058767:CDS | 40.0% | |
TCCATTGTGTAGTATGTTCC+TGG | - | chr3.1:734427-734446 | MS.gene058767:CDS | 40.0% | |
TCCCTTCATATTCGAAAGAC+AGG | + | chr3.1:735328-735347 | None:intergenic | 40.0% | |
TGTCCATGAATCCAAAACAC+AGG | + | chr3.1:733186-733205 | None:intergenic | 40.0% | |
TTCAAAACTCCGAGGACTAA+TGG | - | chr3.1:734211-734230 | MS.gene058767:CDS | 40.0% | |
! | GTAACTTGTAACACAGCAAC+AGG | + | chr3.1:734652-734671 | None:intergenic | 40.0% |
! | TGTTTTCGTTCCAAAGCCTT+TGG | - | chr3.1:734313-734332 | MS.gene058767:intron | 40.0% |
!! | AAGGCTTTGGAACGAAAACA+AGG | + | chr3.1:734313-734332 | None:intergenic | 40.0% |
!! | AGGCTTTGGAACGAAAACAA+GGG | + | chr3.1:734312-734331 | None:intergenic | 40.0% |
!! | TGTTCCTGGTGAATTTGCTA+AGG | - | chr3.1:734441-734460 | MS.gene058767:CDS | 40.0% |
!! | TTTGGTTCTCCATTAGTCCT+CGG | + | chr3.1:734223-734242 | None:intergenic | 40.0% |
ACACCAATGCGAATTACGAG+TGG | - | chr3.1:734553-734572 | MS.gene058767:CDS | 45.0% | |
ACGACCATCGGGAATAGTAA+TGG | + | chr3.1:734014-734033 | None:intergenic | 45.0% | |
AGATCAAAGGATGCTGCCAA+TGG | - | chr3.1:734271-734290 | MS.gene058767:intron | 45.0% | |
AGCGAGGACGCATCAATTTA+AGG | + | chr3.1:735659-735678 | None:intergenic | 45.0% | |
ATGATCTGGAGGAGGAAGTA+TGG | + | chr3.1:732844-732863 | None:intergenic | 45.0% | |
CAGTTATACTATGGGAGGGA+GGG | + | chr3.1:735084-735103 | None:intergenic | 45.0% | |
CGACGAAGTTGTAACACAAC+TGG | + | chr3.1:735897-735916 | None:intergenic | 45.0% | |
GATTCACCAAGTGAGGATCA+AGG | - | chr3.1:735491-735510 | MS.gene058767:intron | 45.0% | |
GCTACAGTTACTGTACCTGA+TGG | - | chr3.1:735200-735219 | MS.gene058767:intron | 45.0% | |
GCTACCATTACTATTCCCGA+TGG | - | chr3.1:734007-734026 | MS.gene058767:intron | 45.0% | |
GTGCTCGGACACTTTATGTT+TGG | + | chr3.1:734241-734260 | None:intergenic | 45.0% | |
TATTGAATTGCAGGCGGAGA+AGG | - | chr3.1:734977-734996 | MS.gene058767:intron | 45.0% | |
TCAGTTATACTATGGGAGGG+AGG | + | chr3.1:735085-735104 | None:intergenic | 45.0% | |
TCTGTTCCTTGATCCTCACT+TGG | + | chr3.1:735500-735519 | None:intergenic | 45.0% | |
TGCTCCTTAGCAAATTCACC+AGG | + | chr3.1:734448-734467 | None:intergenic | 45.0% | |
TGCTGATGATTCACCAAGTG+AGG | - | chr3.1:735484-735503 | MS.gene058767:intron | 45.0% | |
TGTACACGTTTAGGTCGTTC+AGG | - | chr3.1:735780-735799 | MS.gene058767:intron | 45.0% | |
TGTTTGTCATGAATGGGCGA+GGG | + | chr3.1:735041-735060 | None:intergenic | 45.0% | |
TTGTTTGTCATGAATGGGCG+AGG | + | chr3.1:735042-735061 | None:intergenic | 45.0% | |
TTTCGTTCCAAAGCCTTTGG+CGG | - | chr3.1:734316-734335 | MS.gene058767:intron | 45.0% | |
! | CTGTACCTGATGGTCTTACT+TGG | - | chr3.1:735210-735229 | MS.gene058767:intron | 45.0% |
! | GGCAGCATCCTTTGATCTTT+TGG | + | chr3.1:734269-734288 | None:intergenic | 45.0% |
! | GGTTGATTGAGCCTGTGTTT+TGG | - | chr3.1:733172-733191 | MS.gene058767:CDS | 45.0% |
!! | GAGCCTGTGTTTTGGATTCA+TGG | - | chr3.1:733180-733199 | MS.gene058767:CDS | 45.0% |
!! | GATCTTTTGGAAGCAGTGCT+CGG | + | chr3.1:734256-734275 | None:intergenic | 45.0% |
!! | TAAGGAGCATCTGAAGCCAA+AGG | - | chr3.1:734459-734478 | MS.gene058767:CDS | 45.0% |
!!! | AAAAATATAATTAATCTTTT+TGG | - | chr3.1:733546-733565 | MS.gene058767:intron | 5.0% |
AAGGCCTAGGAAAAGGTCCA+GGG | - | chr3.1:735448-735467 | MS.gene058767:intron | 50.0% | |
ACAAGTTACTGCGTCTCGCA+CGG | - | chr3.1:734663-734682 | MS.gene058767:CDS | 50.0% | |
AGTGTCCAAGGCCTAGGAAA+AGG | - | chr3.1:735441-735460 | MS.gene058767:intron | 50.0% | |
ATATACTGCACAAGGGAGCG+AGG | + | chr3.1:735675-735694 | None:intergenic | 50.0% | |
ATATCCCACTCACGACCATC+GGG | + | chr3.1:734025-734044 | None:intergenic | 50.0% | |
ATGAATGGGCGAGGGAAGTA+TGG | + | chr3.1:735033-735052 | None:intergenic | 50.0% | |
CATATCCCACTCACGACCAT+CGG | + | chr3.1:734026-734045 | None:intergenic | 50.0% | |
GAGAAGATATGTTCCGTCGC+CGG | - | chr3.1:732785-732804 | MS.gene058767:CDS | 50.0% | |
GCGACGGAACATATCTTCTC+CGG | + | chr3.1:732785-732804 | None:intergenic | 50.0% | |
GGAATTGAAGAAACGTGGGG+AGG | - | chr3.1:735238-735257 | MS.gene058767:intron | 50.0% | |
TATGTGGCGTGACGTGTGAA+CGG | + | chr3.1:734887-734906 | None:intergenic | 50.0% | |
TATTCCCGATGGTCGTGAGT+GGG | - | chr3.1:734018-734037 | MS.gene058767:CDS | 50.0% | |
TCTTACTGCACATCCGCCAA+AGG | + | chr3.1:734332-734351 | None:intergenic | 50.0% | |
TGGAGCATGAACGGAACCTT+TGG | + | chr3.1:734478-734497 | None:intergenic | 50.0% | |
TTGGAATCTTTCTCCGGCTC+CGG | + | chr3.1:732807-732826 | None:intergenic | 50.0% | |
! | TCAACCCTGGACCTTTTCCT+AGG | + | chr3.1:735455-735474 | None:intergenic | 50.0% |
ACACGTAGTGTCCAAGGCCT+AGG | - | chr3.1:735435-735454 | MS.gene058767:intron | 55.0% | |
AGGTCGTTCAGGACTGCGAT+TGG | - | chr3.1:735791-735810 | MS.gene058767:intron | 55.0% | |
CAAGGCCTAGGAAAAGGTCC+AGG | - | chr3.1:735447-735466 | MS.gene058767:intron | 55.0% | |
CGATGGTCGTGAGTGGGATA+TGG | - | chr3.1:734024-734043 | MS.gene058767:CDS | 55.0% | |
CTATTCCCGATGGTCGTGAG+TGG | - | chr3.1:734017-734036 | MS.gene058767:CDS | 55.0% | |
GAATTGCAGGCGGAGAAGGA+AGG | - | chr3.1:734981-735000 | MS.gene058767:intron | 55.0% | |
GGTCGTTCAGGACTGCGATT+GGG | - | chr3.1:735792-735811 | MS.gene058767:intron | 55.0% | |
GTCGTTCAGGACTGCGATTG+GGG | - | chr3.1:735793-735812 | MS.gene058767:intron | 55.0% | |
TCAGGACTGCGATTGGGGAA+AGG | - | chr3.1:735798-735817 | MS.gene058767:intron | 55.0% | |
TGCACATCCGCCAAAGGCTT+TGG | + | chr3.1:734326-734345 | None:intergenic | 55.0% | |
! | CTGGACCTTTTCCTAGGCCT+TGG | + | chr3.1:735449-735468 | None:intergenic | 55.0% |
ATATGTTCCGTCGCCGGAGC+CGG | - | chr3.1:732791-732810 | MS.gene058767:CDS | 60.0% | |
GCAGGCGGAGAAGGAAGGTA+GGG | - | chr3.1:734986-735005 | MS.gene058767:intron | 60.0% | |
TGCAGGCGGAGAAGGAAGGT+AGG | - | chr3.1:734985-735004 | MS.gene058767:intron | 60.0% | |
TCTTTCTCCGGCTCCGGCGA+CGG | + | chr3.1:732801-732820 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 732771 | 735923 | 732771 | ID=MS.gene058767 |
chr3.1 | mRNA | 732771 | 735923 | 732771 | ID=MS.gene058767.t1;Parent=MS.gene058767 |
chr3.1 | exon | 735819 | 735923 | 735819 | ID=MS.gene058767.t1.exon1;Parent=MS.gene058767.t1 |
chr3.1 | CDS | 735819 | 735923 | 735819 | ID=cds.MS.gene058767.t1;Parent=MS.gene058767.t1 |
chr3.1 | exon | 734349 | 734738 | 734349 | ID=MS.gene058767.t1.exon2;Parent=MS.gene058767.t1 |
chr3.1 | CDS | 734349 | 734738 | 734349 | ID=cds.MS.gene058767.t1;Parent=MS.gene058767.t1 |
chr3.1 | exon | 734010 | 734255 | 734010 | ID=MS.gene058767.t1.exon3;Parent=MS.gene058767.t1 |
chr3.1 | CDS | 734010 | 734255 | 734010 | ID=cds.MS.gene058767.t1;Parent=MS.gene058767.t1 |
chr3.1 | exon | 733630 | 733704 | 733630 | ID=MS.gene058767.t1.exon4;Parent=MS.gene058767.t1 |
chr3.1 | CDS | 733630 | 733704 | 733630 | ID=cds.MS.gene058767.t1;Parent=MS.gene058767.t1 |
chr3.1 | exon | 733318 | 733545 | 733318 | ID=MS.gene058767.t1.exon5;Parent=MS.gene058767.t1 |
chr3.1 | CDS | 733318 | 733545 | 733318 | ID=cds.MS.gene058767.t1;Parent=MS.gene058767.t1 |
chr3.1 | exon | 733135 | 733251 | 733135 | ID=MS.gene058767.t1.exon6;Parent=MS.gene058767.t1 |
chr3.1 | CDS | 733135 | 733251 | 733135 | ID=cds.MS.gene058767.t1;Parent=MS.gene058767.t1 |
chr3.1 | exon | 732771 | 733004 | 732771 | ID=MS.gene058767.t1.exon7;Parent=MS.gene058767.t1 |
chr3.1 | CDS | 732771 | 733004 | 732771 | ID=cds.MS.gene058767.t1;Parent=MS.gene058767.t1 |
Gene Sequence |
Protein sequence |