AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene059112

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059112.t1 MTR_1g008740 96.961 362 10 1 1 361 1 362 0.0 733
MS.gene059112.t1 MTR_1g008740 96.839 348 10 1 15 361 1 348 0.0 704
MS.gene059112.t1 MTR_3g109340 59.524 378 109 16 8 361 1 358 8.91e-123 358
MS.gene059112.t1 MTR_3g109340 59.259 378 109 17 8 361 1 357 5.00e-120 351
MS.gene059112.t1 MTR_6g084430 75.625 160 35 3 24 183 2 157 1.27e-81 252
MS.gene059112.t1 MTR_2g078700 72.903 155 38 2 27 178 23 176 6.58e-80 249
MS.gene059112.t1 MTR_4g108760 65.882 170 52 3 17 183 7 173 1.49e-76 240
MS.gene059112.t1 MTR_3g435150 65.476 168 51 4 20 183 8 172 1.18e-74 233
MS.gene059112.t1 MTR_6g032770 58.291 199 69 4 27 214 18 213 3.72e-73 232
MS.gene059112.t1 MTR_7g085260 64.535 172 54 4 27 193 17 186 3.46e-72 229
MS.gene059112.t1 MTR_6g012670 61.326 181 60 5 6 183 3 176 8.34e-72 226
MS.gene059112.t1 MTR_3g116070 70.073 137 41 0 21 157 17 153 2.87e-69 221
MS.gene059112.t1 MTR_3g070030 63.975 161 51 3 27 183 19 176 1.50e-67 216
MS.gene059112.t1 MTR_7g011130 59.412 170 50 3 30 183 22 188 9.52e-64 207
MS.gene059112.t1 MTR_7g011120 53.846 195 72 5 27 208 8 197 2.04e-60 197
MS.gene059112.t1 MTR_2g064470 57.485 167 62 4 24 187 8 168 4.29e-60 196
MS.gene059112.t1 MTR_1g069805 52.830 159 71 2 19 177 2 156 3.33e-58 190
MS.gene059112.t1 MTR_2g062730 47.826 207 95 7 24 225 7 205 3.11e-57 190
MS.gene059112.t1 MTR_4g035590 59.740 154 54 4 27 177 8 156 1.71e-56 188
MS.gene059112.t1 MTR_7g097090 52.866 157 70 2 19 175 2 154 1.79e-56 186
MS.gene059112.t1 MTR_4g036030 56.494 154 60 4 27 177 7 156 4.02e-55 184
MS.gene059112.t1 MTR_2g080010 50.575 174 67 3 20 178 8 177 4.35e-55 184
MS.gene059112.t1 MTR_4g101680 56.494 154 60 4 27 177 7 156 1.10e-54 184
MS.gene059112.t1 MTR_5g041940 50.000 180 72 5 27 193 3 177 1.35e-54 180
MS.gene059112.t1 MTR_7g085220 48.663 187 77 4 24 195 5 187 1.42e-54 182
MS.gene059112.t1 MTR_5g012080 54.545 154 65 3 27 177 7 158 2.12e-54 182
MS.gene059112.t1 MTR_3g088110 52.907 172 67 4 24 188 4 168 2.52e-54 180
MS.gene059112.t1 MTR_7g100990 51.807 166 74 2 17 177 1 165 2.96e-54 181
MS.gene059112.t1 MTR_8g059170 52.381 168 73 4 26 189 13 177 5.83e-54 181
MS.gene059112.t1 MTR_2g079990 54.037 161 66 4 26 183 15 170 9.21e-54 181
MS.gene059112.t1 MTR_6g477900 55.769 156 63 4 27 179 6 158 1.39e-53 177
MS.gene059112.t1 MTR_2g064090 57.595 158 58 6 26 178 5 158 2.00e-53 180
MS.gene059112.t1 MTR_2157s0010 52.761 163 65 3 27 178 8 169 3.26e-53 177
MS.gene059112.t1 MTR_5g021710 52.229 157 68 4 24 177 5 157 3.37e-53 179
MS.gene059112.t1 MTR_8g024480 48.370 184 79 4 24 194 12 192 3.62e-53 181
MS.gene059112.t1 MTR_4g089135 46.701 197 66 5 27 196 15 199 8.05e-53 178
MS.gene059112.t1 MTR_3g070040 52.459 183 75 6 31 207 12 188 1.17e-52 177
MS.gene059112.t1 MTR_3g064580 56.051 157 62 4 26 178 5 158 1.80e-52 184
MS.gene059112.t1 MTR_5g076850 56.410 156 62 4 26 178 5 157 3.50e-52 183
MS.gene059112.t1 MTR_1g096430 51.534 163 72 4 24 183 4 162 6.81e-52 176
MS.gene059112.t1 MTR_2g093810 42.000 250 119 8 26 267 13 244 8.51e-52 175
MS.gene059112.t1 MTR_4g081870 50.289 173 72 5 17 182 1 166 1.49e-51 172
MS.gene059112.t1 MTR_8g094580 50.289 173 73 5 17 184 1 165 1.51e-51 173
MS.gene059112.t1 MTR_8g076110 48.765 162 76 4 24 182 3 160 1.76e-51 174
MS.gene059112.t1 MTR_7g005280 49.730 185 72 6 24 195 12 188 3.98e-51 171
MS.gene059112.t1 MTR_0036s0150 52.866 157 70 2 29 183 7 161 7.35e-50 175
MS.gene059112.t1 MTR_2g079990 44.920 187 71 3 26 183 15 198 5.06e-49 169
MS.gene059112.t1 MTR_3g096920 48.235 170 80 4 24 189 4 169 1.00e-48 166
MS.gene059112.t1 MTR_1g090723 50.318 157 74 2 29 183 10 164 1.68e-48 172
MS.gene059112.t1 MTR_1g090723 50.318 157 74 2 29 183 10 164 2.21e-48 172
MS.gene059112.t1 MTR_8g467490 45.665 173 83 3 16 178 3 174 7.92e-47 164
MS.gene059112.t1 MTR_1g090723 50.000 158 74 3 29 183 10 165 9.03e-47 168
MS.gene059112.t1 MTR_5g014300 49.693 163 72 5 26 181 5 164 2.02e-46 161
MS.gene059112.t1 MTR_3g093050 54.194 155 65 4 26 177 21 172 7.61e-45 162
MS.gene059112.t1 MTR_5g040420 45.122 164 80 2 24 178 11 173 9.89e-45 158
MS.gene059112.t1 MTR_4g098630 44.974 189 84 6 17 196 1 178 1.34e-44 156
MS.gene059112.t1 MTR_3g093050 54.194 155 65 4 26 177 21 172 1.46e-44 162
MS.gene059112.t1 MTR_6g011860 43.017 179 86 4 10 178 2 174 8.52e-44 155
MS.gene059112.t1 MTR_3g096920 55.303 132 55 2 24 155 4 131 1.22e-43 154
MS.gene059112.t1 MTR_5g069030 52.597 154 67 4 27 177 25 175 1.91e-43 159
MS.gene059112.t1 MTR_4g134460 45.732 164 85 4 23 186 50 209 1.46e-42 153
MS.gene059112.t1 MTR_3g096140 49.342 152 71 4 29 177 9 157 1.97e-42 149
MS.gene059112.t1 MTR_3g093040 50.323 155 71 4 26 177 107 258 3.72e-42 149
MS.gene059112.t1 MTR_1g090720 50.311 161 68 4 26 177 41 198 3.80e-42 153
MS.gene059112.t1 MTR_3g096140 48.701 154 73 4 29 179 9 159 9.63e-42 149
MS.gene059112.t1 MTR_5g090970 40.571 175 92 3 21 184 12 185 1.09e-41 148
MS.gene059112.t1 MTR_1g097300 50.000 160 70 6 29 183 21 175 9.51e-41 151
MS.gene059112.t1 MTR_2g086880 43.750 176 87 5 26 200 17 181 1.20e-40 150
MS.gene059112.t1 MTR_2g086880 44.509 173 84 5 29 200 20 181 1.21e-40 151
MS.gene059112.t1 MTR_5g090970 40.571 175 91 4 21 184 12 184 4.84e-40 144
MS.gene059112.t1 MTR_8g099750 36.652 221 117 5 27 231 14 227 4.69e-39 139
MS.gene059112.t1 MTR_4g075980 43.125 160 85 3 24 182 12 166 6.46e-39 140
MS.gene059112.t1 MTR_2g068880 39.683 189 97 5 11 183 5 192 1.17e-38 140
MS.gene059112.t1 MTR_8g063550 45.455 154 78 4 27 177 6 156 1.35e-38 140
MS.gene059112.t1 MTR_8g063550 45.455 154 78 4 27 177 6 156 3.29e-38 142
MS.gene059112.t1 MTR_2g068920 38.830 188 99 4 11 183 5 191 3.48e-38 138
MS.gene059112.t1 MTR_8g063550 45.455 154 78 4 27 177 6 156 4.22e-38 141
MS.gene059112.t1 MTR_8g093580 43.506 154 81 4 27 177 6 156 4.15e-36 137
MS.gene059112.t1 MTR_3g098810 38.140 215 110 8 27 231 14 215 1.65e-35 130
MS.gene059112.t1 MTR_8g023840 44.667 150 76 3 27 174 11 155 8.51e-34 129
MS.gene059112.t1 MTR_4g052620 38.462 169 95 4 24 184 2 169 1.24e-33 125
MS.gene059112.t1 MTR_3g096140 45.714 140 70 4 43 179 2 138 2.97e-32 124
MS.gene059112.t1 MTR_3g098810 43.972 141 74 3 27 165 14 151 7.91e-32 118
MS.gene059112.t1 MTR_8g094580 52.212 113 46 3 77 184 2 111 8.33e-32 120
MS.gene059112.t1 MTR_8g023900 41.026 156 87 3 25 178 10 162 2.82e-31 123
MS.gene059112.t1 MTR_8g023900 37.566 189 100 6 1 177 158 340 5.85e-30 120
MS.gene059112.t1 MTR_8g023860 45.736 129 67 2 27 153 12 139 4.33e-31 122
MS.gene059112.t1 MTR_4g094302 39.752 161 77 4 27 178 11 160 7.35e-31 116
MS.gene059112.t1 MTR_2g086690 42.143 140 69 4 28 159 5 140 8.09e-31 117
MS.gene059112.t1 MTR_8g023930 40.260 154 85 3 27 178 24 172 2.11e-30 121
MS.gene059112.t1 MTR_4g094302 43.511 131 61 3 27 155 11 130 2.45e-30 114
MS.gene059112.t1 MTR_7g105170 36.257 171 97 5 25 184 2 171 3.10e-30 116
MS.gene059112.t1 MTR_8g023880 40.698 172 77 6 22 177 2 164 2.59e-29 114
MS.gene059112.t1 MTR_7g070140 55.696 79 35 0 82 160 18 96 1.26e-25 100
MS.gene059112.t1 MTR_8g093790 41.060 151 67 5 27 177 10 138 6.17e-23 94.7
MS.gene059112.t1 MTR_3g096400 35.912 181 92 7 27 194 7 176 7.17e-22 92.8
MS.gene059112.t1 MTR_7g083360 35.821 134 79 5 24 155 7 135 2.08e-18 81.6
MS.gene059112.t1 MTR_7g083330 34.351 131 79 5 27 155 18 143 3.04e-17 79.3
MS.gene059112.t1 MTR_7g083370 32.090 134 84 4 24 155 7 135 8.54e-15 71.2
MS.gene059112.t1 MTR_7g070150 49.296 71 34 1 120 190 2 70 1.43e-14 68.9
MS.gene059112.t1 MTR_2g090735 34.118 170 85 8 27 178 49 209 6.74e-14 71.6
MS.gene059112.t1 MTR_8g102240 30.994 171 90 6 27 175 47 211 1.42e-12 68.9
MS.gene059112.t1 MTR_8g102240 30.994 171 90 6 27 175 47 211 1.43e-12 68.9
MS.gene059112.t1 MTR_1g093680 28.708 209 118 9 27 217 58 253 3.69e-11 64.7
MS.gene059112.t1 MTR_7g116460 30.000 180 112 8 33 205 11 183 5.02e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059112.t1 AT2G24430 51.966 356 102 9 21 358 10 314 1.69e-104 310
MS.gene059112.t1 AT2G24430 51.966 356 102 9 21 358 10 314 1.69e-104 310
MS.gene059112.t1 AT3G18400 73.750 160 39 2 24 183 2 158 2.14e-82 253
MS.gene059112.t1 AT5G53950 71.250 160 42 2 25 181 15 173 2.13e-79 248
MS.gene059112.t1 AT5G61430 67.647 170 49 3 22 188 11 177 9.48e-77 240
MS.gene059112.t1 AT3G15170 70.000 160 44 2 22 178 15 173 4.49e-76 237
MS.gene059112.t1 AT5G07680 68.485 165 46 3 27 188 3 164 6.15e-76 237
MS.gene059112.t1 AT5G07680 64.641 181 54 4 15 188 1 178 6.80e-76 237
MS.gene059112.t1 AT1G76420 64.671 167 58 1 16 182 11 176 1.00e-73 232
MS.gene059112.t1 AT5G39610 63.043 184 54 5 22 202 15 187 1.22e-72 228
MS.gene059112.t1 AT5G18270 69.481 154 42 3 27 177 21 172 1.93e-70 224
MS.gene059112.t1 AT5G18270 68.831 154 43 3 27 177 21 172 7.10e-70 222
MS.gene059112.t1 AT3G29035 61.202 183 64 4 8 186 5 184 5.30e-69 219
MS.gene059112.t1 AT3G04060 60.773 181 61 4 18 195 11 184 7.58e-68 217
MS.gene059112.t1 AT4G27410 53.216 171 70 5 19 183 2 168 1.90e-58 191
MS.gene059112.t1 AT3G12977 48.058 206 85 6 24 214 15 213 3.19e-58 190
MS.gene059112.t1 AT4G10350 59.355 155 56 4 27 177 9 160 3.81e-57 189
MS.gene059112.t1 AT1G33280 59.740 154 54 4 27 177 8 156 1.60e-56 187
MS.gene059112.t1 AT1G56010 39.716 282 145 9 24 291 16 286 1.81e-56 187
MS.gene059112.t1 AT4G27410 48.936 188 69 6 19 183 2 185 5.05e-55 183
MS.gene059112.t1 AT1G12260 54.430 158 65 4 27 181 7 160 5.39e-55 184
MS.gene059112.t1 AT1G12260 54.430 158 65 4 27 181 7 160 7.51e-55 185
MS.gene059112.t1 AT1G62700 55.063 158 64 4 27 181 7 160 3.34e-54 183
MS.gene059112.t1 AT1G62700 55.063 158 64 4 27 181 7 160 3.34e-54 183
MS.gene059112.t1 AT2G18060 35.671 328 174 11 26 331 8 320 3.34e-54 182
MS.gene059112.t1 AT2G18060 35.671 328 174 11 26 331 8 320 3.34e-54 182
MS.gene059112.t1 AT1G65910 55.280 161 66 4 26 183 5 162 3.91e-54 188
MS.gene059112.t1 AT1G69490 53.659 164 68 4 24 182 6 166 3.95e-54 179
MS.gene059112.t1 AT3G04070 50.847 177 75 4 20 185 3 178 4.05e-54 182
MS.gene059112.t1 AT4G28530 48.851 174 71 2 19 177 2 172 5.16e-54 182
MS.gene059112.t1 AT3G10500 56.522 161 64 4 26 183 8 165 5.31e-54 186
MS.gene059112.t1 AT1G52890 53.459 159 70 3 26 183 13 168 1.36e-53 179
MS.gene059112.t1 AT1G61110 51.479 169 67 4 27 182 16 182 1.54e-53 179
MS.gene059112.t1 AT4G36160 53.548 155 65 4 26 177 13 163 1.75e-53 181
MS.gene059112.t1 AT4G36160 53.548 155 65 4 26 177 9 159 1.77e-53 181
MS.gene059112.t1 AT4G36160 53.548 155 65 4 26 177 9 159 1.77e-53 181
MS.gene059112.t1 AT1G71930 51.592 157 69 4 24 177 6 158 2.30e-53 179
MS.gene059112.t1 AT1G71930 51.592 157 69 4 24 177 6 158 2.30e-53 179
MS.gene059112.t1 AT1G01720 53.086 162 67 4 27 183 7 164 3.03e-53 177
MS.gene059112.t1 AT3G15500 53.459 159 70 3 26 183 13 168 4.34e-53 178
MS.gene059112.t1 AT5G62380 52.795 161 69 4 27 184 7 163 7.39e-53 178
MS.gene059112.t1 AT5G62380 52.795 161 69 4 27 184 7 163 7.39e-53 178
MS.gene059112.t1 AT3G17730 55.844 154 62 4 27 177 6 156 8.39e-53 175
MS.gene059112.t1 AT3G03200 57.051 156 60 4 26 177 5 157 9.75e-53 181
MS.gene059112.t1 AT3G61910 47.802 182 75 4 24 188 8 186 1.12e-52 177
MS.gene059112.t1 AT2G46770 50.877 171 64 5 24 177 13 180 1.17e-52 178
MS.gene059112.t1 AT5G04410 55.280 161 66 4 26 183 8 165 3.16e-52 182
MS.gene059112.t1 AT1G79580 56.410 156 59 5 26 177 16 166 8.83e-52 176
MS.gene059112.t1 AT1G79580 56.410 156 59 5 26 177 16 166 8.83e-52 176
MS.gene059112.t1 AT1G79580 56.410 156 59 5 26 177 16 166 8.83e-52 176
MS.gene059112.t1 AT1G79580 56.410 156 59 5 26 177 16 166 8.83e-52 176
MS.gene059112.t1 AT1G79580 56.410 156 59 5 26 177 16 166 8.83e-52 176
MS.gene059112.t1 AT3G04070 46.667 195 72 5 20 185 3 194 1.09e-51 176
MS.gene059112.t1 AT5G66300 51.613 155 69 3 26 177 11 162 1.31e-51 174
MS.gene059112.t1 AT5G17260 56.410 156 61 4 26 177 5 157 1.50e-51 178
MS.gene059112.t1 AT5G08790 52.096 167 70 4 24 184 4 166 1.88e-51 173
MS.gene059112.t1 AT5G63790 52.976 168 67 5 24 184 47 209 6.03e-51 172
MS.gene059112.t1 AT5G63790 52.976 168 67 5 24 184 57 219 7.05e-51 172
MS.gene059112.t1 AT3G10490 52.727 165 69 5 19 178 19 179 2.09e-49 166
MS.gene059112.t1 AT3G10480 56.329 158 58 6 26 177 26 178 6.64e-49 171
MS.gene059112.t1 AT1G77450 51.220 164 66 4 27 183 10 166 6.93e-49 165
MS.gene059112.t1 AT1G32770 49.697 165 66 5 27 177 16 177 1.12e-48 168
MS.gene059112.t1 AT3G15510 47.305 167 69 3 31 182 21 183 1.86e-48 167
MS.gene059112.t1 AT3G10480 55.128 156 62 5 26 177 26 177 2.16e-48 169
MS.gene059112.t1 AT5G61430 67.826 115 32 2 77 188 2 114 2.66e-48 164
MS.gene059112.t1 AT5G46590 51.282 156 70 4 26 177 5 158 7.41e-48 164
MS.gene059112.t1 AT3G10490 53.049 164 68 5 19 177 19 178 8.45e-48 168
MS.gene059112.t1 AT5G46590 56.818 132 53 3 26 155 5 134 9.90e-48 163
MS.gene059112.t1 AT4G17980 51.572 159 67 4 26 177 5 160 1.00e-47 162
MS.gene059112.t1 AT1G33060 52.500 160 70 4 25 181 22 178 2.46e-47 170
MS.gene059112.t1 AT5G13180 50.318 157 73 3 27 182 14 166 2.55e-47 161
MS.gene059112.t1 AT1G33060 52.500 160 70 4 25 181 22 178 2.60e-47 170
MS.gene059112.t1 AT1G54330 52.795 161 67 5 26 183 5 159 2.66e-47 162
MS.gene059112.t1 AT4G17980 51.572 159 67 4 26 177 5 160 3.04e-47 162
MS.gene059112.t1 AT4G35580 53.846 156 66 4 25 177 7 159 9.96e-47 166
MS.gene059112.t1 AT4G35580 53.846 156 66 4 25 177 7 159 1.07e-46 166
MS.gene059112.t1 AT4G35580 53.846 156 66 4 25 177 7 159 1.16e-46 166
MS.gene059112.t1 AT1G52880 50.932 161 61 4 31 177 21 177 3.03e-45 158
MS.gene059112.t1 AT1G26870 43.429 175 88 2 14 178 3 176 3.55e-45 160
MS.gene059112.t1 AT1G34180 50.000 158 73 4 29 183 18 172 1.05e-44 159
MS.gene059112.t1 AT5G39820 41.489 188 85 4 14 178 7 192 1.67e-44 156
MS.gene059112.t1 AT2G02450 47.561 164 82 4 29 192 53 212 2.96e-44 157
MS.gene059112.t1 AT2G02450 47.561 164 82 4 29 192 53 212 3.28e-44 157
MS.gene059112.t1 AT1G34190 50.000 158 73 4 29 183 18 172 6.08e-44 159
MS.gene059112.t1 AT1G34180 50.000 158 73 4 29 183 18 172 8.42e-44 159
MS.gene059112.t1 AT2G33480 50.658 152 68 4 27 177 15 160 2.72e-43 151
MS.gene059112.t1 AT3G10480 47.120 191 57 7 26 177 26 211 4.44e-43 157
MS.gene059112.t1 AT5G24590 45.652 184 91 5 26 202 12 193 5.59e-43 155
MS.gene059112.t1 AT3G49530 50.000 156 73 4 25 177 11 164 7.88e-43 154
MS.gene059112.t1 AT2G43000 42.945 163 88 3 22 182 13 172 8.64e-43 150
MS.gene059112.t1 AT1G34180 46.471 170 73 4 29 183 18 184 9.71e-43 154
MS.gene059112.t1 AT2G33480 50.000 156 61 5 27 177 15 158 1.40e-42 149
MS.gene059112.t1 AT3G49530 50.314 159 68 5 25 177 11 164 1.76e-42 154
MS.gene059112.t1 AT5G64060 46.154 156 78 4 27 179 6 158 3.22e-42 150
MS.gene059112.t1 AT5G09330 50.000 154 71 4 27 177 6 156 3.47e-42 154
MS.gene059112.t1 AT5G09330 50.000 154 71 4 27 177 6 156 3.47e-42 154
MS.gene059112.t1 AT5G09330 50.000 154 71 4 27 177 6 156 3.47e-42 154
MS.gene059112.t1 AT5G09330 50.000 154 71 4 27 177 6 156 3.47e-42 154
MS.gene059112.t1 AT5G09330 50.000 154 71 4 27 177 6 156 3.47e-42 154
MS.gene059112.t1 AT1G34180 46.471 170 73 4 29 183 18 184 5.63e-42 154
MS.gene059112.t1 AT1G32870 48.370 184 78 7 7 183 29 202 1.59e-41 153
MS.gene059112.t1 AT2G27300 49.032 155 68 5 26 179 13 157 3.86e-41 147
MS.gene059112.t1 AT1G32870 51.235 162 69 5 27 183 10 166 4.45e-41 151
MS.gene059112.t1 AT1G32870 51.235 162 69 5 27 183 10 166 4.46e-41 151
MS.gene059112.t1 AT1G32510 45.783 166 80 4 27 183 6 170 1.54e-40 144
MS.gene059112.t1 AT2G17040 43.226 155 82 3 29 182 8 157 5.13e-40 143
MS.gene059112.t1 AT5G22290 44.578 166 79 5 26 190 20 173 1.26e-38 141
MS.gene059112.t1 AT1G56010 48.299 147 59 5 77 210 2 144 6.97e-37 134
MS.gene059112.t1 AT3G12977 47.059 153 60 5 77 214 14 160 1.26e-36 132
MS.gene059112.t1 AT3G12910 38.378 185 95 6 18 184 9 192 6.52e-36 132
MS.gene059112.t1 AT4G28530 47.059 136 57 1 19 139 2 137 1.24e-35 132
MS.gene059112.t1 AT3G44290 40.556 180 87 6 29 203 16 180 1.96e-35 129
MS.gene059112.t1 AT4G10350 57.798 109 40 3 73 177 7 113 2.76e-35 130
MS.gene059112.t1 AT3G44290 40.556 180 87 6 29 203 16 180 1.19e-34 130
MS.gene059112.t1 AT5G04395 44.371 151 69 3 19 155 20 169 1.33e-33 123
MS.gene059112.t1 AT3G44350 35.542 166 100 3 25 184 3 167 3.16e-27 108
MS.gene059112.t1 AT5G64530 36.782 174 78 6 27 183 3 161 1.02e-26 105
MS.gene059112.t1 AT5G64530 42.748 131 58 4 27 155 3 118 1.46e-26 103
MS.gene059112.t1 AT2G33480 54.167 96 41 2 83 177 10 103 3.76e-26 104
MS.gene059112.t1 AT3G44350 38.462 143 83 2 25 163 3 144 1.04e-25 101
MS.gene059112.t1 AT1G02230 43.846 130 66 5 28 153 4 130 2.10e-25 105
MS.gene059112.t1 AT4G01550 37.748 151 87 3 30 177 7 153 1.88e-24 104
MS.gene059112.t1 AT3G04420 39.416 137 78 3 28 161 4 138 2.34e-24 101
MS.gene059112.t1 AT3G04420 40.602 133 74 3 28 157 4 134 4.25e-24 101
MS.gene059112.t1 AT4G01520 33.696 184 114 4 28 207 5 184 6.02e-24 100
MS.gene059112.t1 AT5G22380 40.152 132 67 4 30 153 8 135 8.36e-24 98.6
MS.gene059112.t1 AT4G01540 36.306 157 92 4 30 182 7 159 1.29e-23 101
MS.gene059112.t1 AT4G01540 35.669 157 93 4 30 182 7 159 2.40e-23 100
MS.gene059112.t1 AT4G01540 35.669 157 93 4 30 182 7 159 2.64e-23 100
MS.gene059112.t1 AT4G01540 35.669 157 93 4 30 182 7 159 3.94e-23 100
MS.gene059112.t1 AT1G02250 38.462 130 73 4 28 153 4 130 1.12e-21 95.1
MS.gene059112.t1 AT3G10490 56.962 79 30 2 101 177 2 78 1.01e-20 92.4
MS.gene059112.t1 AT3G10490 56.962 79 30 2 101 177 2 78 1.01e-20 92.4
MS.gene059112.t1 AT1G02220 37.984 129 72 4 28 153 4 127 3.76e-20 91.3
MS.gene059112.t1 AT2G18060 35.374 147 82 5 106 246 2 141 1.65e-19 87.8
MS.gene059112.t1 AT2G43000 41.758 91 49 2 89 177 1 89 8.22e-19 84.0
MS.gene059112.t1 AT1G01010 37.594 133 72 5 30 153 6 136 7.80e-18 84.7
MS.gene059112.t1 AT3G04430 33.775 151 84 5 33 169 6 154 2.65e-16 77.0
MS.gene059112.t1 AT5G50820 32.192 146 72 6 27 162 17 145 4.67e-15 73.2
MS.gene059112.t1 AT5G14000 33.125 160 97 6 27 183 15 167 1.47e-14 72.4
MS.gene059112.t1 AT5G22290 45.238 84 35 3 107 190 2 74 4.22e-14 71.6
MS.gene059112.t1 AT5G14000 32.857 140 87 4 27 164 15 149 1.56e-13 68.2
MS.gene059112.t1 AT3G56530 30.612 147 98 3 23 167 48 192 4.57e-13 69.7
MS.gene059112.t1 AT5G56620 31.429 175 88 7 27 175 43 211 5.19e-12 67.0
MS.gene059112.t1 AT5G56620 31.429 175 88 7 27 175 43 211 5.29e-12 67.0
MS.gene059112.t1 AT5G56620 31.818 176 86 8 27 175 43 211 7.52e-12 66.6
MS.gene059112.t1 AT3G55210 27.647 170 105 5 26 182 10 174 1.99e-11 64.3

Find 98 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGAAGGATTCACCATTTC+AGG 0.161758 1.2:-11140147 MS.gene059112:CDS
CCAACAATGATGCAGCATTT+AGG 0.221902 1.2:-11140288 MS.gene059112:CDS
CTAAGGGTGATGATGATAAA+TGG 0.225370 1.2:+11140172 None:intergenic
GTTGGTTCTTATACTGGATT+TGG 0.259797 1.2:+11141508 None:intergenic
TACCTTGTTGGTTCTTATAC+TGG 0.266381 1.2:+11141502 None:intergenic
CAACAATGATGCAGCATTTA+GGG 0.296732 1.2:-11140287 MS.gene059112:CDS
TAGCAAAGAAAGGAAGGATT+TGG 0.310503 1.2:-11142497 MS.gene059112:CDS
GCCATCAACTACTCATACTA+TGG 0.320155 1.2:-11140070 MS.gene059112:CDS
GTGTGGATCTTGATCATTAC+TGG 0.322379 1.2:-11139888 MS.gene059112:CDS
TCAGGGCTTAATTTGAATCT+TGG 0.354521 1.2:-11140129 MS.gene059112:CDS
CAACAGTGTTACATCAGAAT+TGG 0.355460 1.2:-11141621 MS.gene059112:CDS
GAGCAACAAACACTGGATAT+TGG 0.356961 1.2:-11141673 MS.gene059112:CDS
AATAATAATAACTTAGGGTT+TGG 0.365351 1.2:-11139985 MS.gene059112:CDS
GCAGAGAATAATAATAACTT+AGG 0.389630 1.2:-11139991 MS.gene059112:CDS
TGCGAGCCATGGGAGCTTCC+AGG 0.393548 1.2:-11142319 MS.gene059112:intron
GTACAATATGCAGGGTACTA+TGG 0.400982 1.2:-11139917 MS.gene059112:CDS
AATTATATAATATACCTTGT+TGG 0.426634 1.2:+11141490 None:intergenic
ATTCAAATTAAGCCCTGAAA+TGG 0.426887 1.2:+11140134 None:intergenic
GGTTGGTATGAAGAAAACTT+TGG 0.429083 1.2:-11141600 MS.gene059112:CDS
AATAATAACTTAGGGTTTGG+TGG 0.433273 1.2:-11139982 MS.gene059112:CDS
GACCAACTTCTAGATTGATA+TGG 0.439869 1.2:+11140340 None:intergenic
GTAAGATTTGAAGAAGAAGA+AGG 0.440782 1.2:+11140384 None:intergenic
CATTTATCATCATCACCCTT+AGG 0.446380 1.2:-11140171 MS.gene059112:CDS
CTATTAGTTCTCACACCTGT+TGG 0.449944 1.2:+11141695 None:intergenic
AGTTGTTAGCAAAGAAAGGA+AGG 0.451453 1.2:-11142503 MS.gene059112:CDS
CAAACCCTACTCATGGCAAT+AGG 0.453517 1.2:-11139939 MS.gene059112:CDS
GGTGAATCCTTCTCCTCCTA+AGG 0.457239 1.2:+11140155 None:intergenic
TAAGGGTGATGATGATAAAT+GGG 0.459246 1.2:+11140173 None:intergenic
TTCTTATACTGGATTTGGAA+TGG 0.468387 1.2:+11141513 None:intergenic
GGGCTTAATTTGAATCTTGG+AGG 0.468716 1.2:-11140126 MS.gene059112:CDS
TGGCAATAGGTACAATATGC+AGG 0.471195 1.2:-11139926 MS.gene059112:CDS
AGAGTATTCCGCAAGAGTGC+AGG 0.472263 1.2:-11140420 MS.gene059112:CDS
AGAAAGGAAGGATTTGGAAA+TGG 0.473442 1.2:-11142491 MS.gene059112:CDS
TATATATGCAGCAGGATGAA+TGG 0.479522 1.2:-11140452 MS.gene059112:intron
TACCATATCAATCTAGAAGT+TGG 0.481646 1.2:-11140342 MS.gene059112:CDS
GCCATAGTATGAGTAGTTGA+TGG 0.484673 1.2:+11140069 None:intergenic
AAGAAGTTGTTAGCAAAGAA+AGG 0.487064 1.2:-11142507 MS.gene059112:CDS
CTAGAGGAGAGAAAACCAAC+TGG 0.491009 1.2:-11141556 MS.gene059112:CDS
GGTAGGATGAAATCGAAATC+CGG 0.491316 1.2:+11142435 None:intergenic
AGAGATCGTAAATATCCAAC+AGG 0.491428 1.2:-11141710 MS.gene059112:CDS
GATGACTTCGCTTACTTGCA+TGG 0.492068 1.2:+11142705 None:intergenic
CCTAAATGCTGCATCATTGT+TGG 0.501547 1.2:+11140288 None:intergenic
ATATATGCAGCAGGATGAAT+GGG 0.505037 1.2:-11140451 MS.gene059112:intron
ATTTATAGGGAAGGCCAAGA+TGG 0.507478 1.2:-11141762 MS.gene059112:intron
ATCTCAACAAATGCGAGCCA+TGG 0.513090 1.2:-11142330 MS.gene059112:CDS
ACTTCTAGATTGATATGGTA+AGG 0.513737 1.2:+11140345 None:intergenic
GGAAGGAACTCGTGAGAAAG+AGG 0.513889 1.2:-11142470 MS.gene059112:CDS
TGTACCTATTGCCATGAGTA+GGG 0.521891 1.2:+11139935 None:intergenic
CAGAGAATAATAATAACTTA+GGG 0.522455 1.2:-11139990 MS.gene059112:CDS
CCAAGATGGGTACAAAAGAA+TGG 0.522857 1.2:-11141748 MS.gene059112:CDS
GGTATATTATTATTAAAGCT+AGG 0.528032 1.2:+11140315 None:intergenic
AATAACTTAGGGTTTGGTGG+TGG 0.530200 1.2:-11139979 MS.gene059112:CDS
TGAAGGAGTGATCAGTAAGA+AGG 0.530948 1.2:+11139862 None:intergenic
GAAATCGAAATCCGGGAGGT+AGG 0.532076 1.2:+11142443 None:intergenic
TTGTACCTATTGCCATGAGT+AGG 0.535715 1.2:+11139934 None:intergenic
AAATGGGAATATTGATGCAT+TGG 0.541252 1.2:+11140189 None:intergenic
ACTAATAGAGCAACAAACAC+TGG 0.544961 1.2:-11141680 MS.gene059112:CDS
AAATCGAAATCCGGGAGGTA+GGG 0.547523 1.2:+11142444 None:intergenic
TTCAGCTCCAACATGATGAC+AGG 0.548671 1.2:-11140039 MS.gene059112:CDS
GAGAAGGATTCACCATTTCA+GGG 0.553123 1.2:-11140146 MS.gene059112:CDS
TCTTTGCACCTGCACTCTTG+CGG 0.553400 1.2:+11140412 None:intergenic
TCATCACCCTTAGGAGGAGA+AGG 0.556810 1.2:-11140162 MS.gene059112:CDS
TGCTGCATCATTGTTGGTGG+TGG 0.557904 1.2:+11140294 None:intergenic
AAATGCTGCATCATTGTTGG+TGG 0.560573 1.2:+11140291 None:intergenic
TAAGATTTGAAGAAGAAGAA+GGG 0.568739 1.2:+11140385 None:intergenic
ATTATTCTCTGCAGCAACAA+GGG 0.570178 1.2:+11140002 None:intergenic
ATTTGCACCTGTCATCATGT+TGG 0.570618 1.2:+11140032 None:intergenic
GTATGAGTAGTTGATGGCAT+TGG 0.570711 1.2:+11140075 None:intergenic
ACTGCAGAAGTTCTAAGAGC+TGG 0.571857 1.2:-11140216 MS.gene059112:CDS
GTAGGATGAAATCGAAATCC+GGG 0.573405 1.2:+11142436 None:intergenic
TTTATAGGGAAGGCCAAGAT+GGG 0.574283 1.2:-11141761 MS.gene059112:intron
AGGAAGGATTTGGAAATGGA+AGG 0.575195 1.2:-11142487 MS.gene059112:CDS
TCTCAACAAATGCGAGCCAT+GGG 0.580584 1.2:-11142329 MS.gene059112:CDS
AATCTCCTTGTCTTTCCCTG+TGG 0.581208 1.2:+11141646 None:intergenic
ACTGGATATTGGAAAACCAC+AGG 0.581954 1.2:-11141662 MS.gene059112:CDS
AAAGAGGAAACCCTACCTCC+CGG 0.588423 1.2:-11142454 MS.gene059112:CDS
TTATCATCATCACCCTTAGG+AGG 0.591927 1.2:-11140168 MS.gene059112:CDS
TATTATTCTCTGCAGCAACA+AGG 0.597751 1.2:+11140001 None:intergenic
AATAATGCAAACCCTACTCA+TGG 0.598055 1.2:-11139946 MS.gene059112:CDS
AGTGTTACATCAGAATTGGT+TGG 0.599286 1.2:-11141617 MS.gene059112:CDS
GTGAATCCTTCTCCTCCTAA+GGG 0.600976 1.2:+11140156 None:intergenic
GTGATGAGTTCTTCATCGGT+AGG 0.602022 1.2:+11142418 None:intergenic
TACAAAGGTCGTGCTCCTAG+AGG 0.602672 1.2:-11141572 MS.gene059112:CDS
GTAAGTGATGAGTTCTTCAT+CGG 0.604469 1.2:+11142414 None:intergenic
ATATTCATGCATGACCCAGT+TGG 0.607778 1.2:+11141541 None:intergenic
GGCAATAGGTACAATATGCA+GGG 0.608820 1.2:-11139925 MS.gene059112:CDS
CAAAATAGTTTGTGATGACG+TGG 0.610809 1.2:+11140101 None:intergenic
GGGTACTATGGACCATTGTG+TGG 0.616034 1.2:-11139905 MS.gene059112:CDS
GCAGAAGTTCTAAGAGCTGG+TGG 0.623370 1.2:-11140213 MS.gene059112:CDS
CTGGATATTGGAAAACCACA+GGG 0.650427 1.2:-11141661 MS.gene059112:CDS
ATATTATTATTAAAGCTAGG+AGG 0.658281 1.2:+11140318 None:intergenic
TATGCAGCAGGATGAATGGG+TGG 0.662923 1.2:-11140448 MS.gene059112:intron
AGGAGTGATCAGTAAGAAGG+TGG 0.667224 1.2:+11139865 None:intergenic
ATCCAGTATAAGAACCAACA+AGG 0.673356 1.2:-11141504 MS.gene059112:intron
GAAAACCACAGGGAAAGACA+AGG 0.680177 1.2:-11141651 MS.gene059112:CDS
TAGAGGAGAGAAAACCAACT+GGG 0.682123 1.2:-11141555 MS.gene059112:CDS
AATGATCAAGATCCACACAA+TGG 0.714365 1.2:+11139893 None:intergenic
GGATGAAATCGAAATCCGGG+AGG 0.762260 1.2:+11142439 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTAAAAGATGTATAAT+AGG + chr1.2:11141192-11141211 None:intergenic 10.0%
!! AATTTAAAAGATGTATAATA+GGG + chr1.2:11141191-11141210 None:intergenic 10.0%
!! ATGAAAAAAATTATGATAAT+AGG - chr1.2:11141158-11141177 MS.gene059112:intron 10.0%
!! TATATATATTTAAGAATAAG+GGG - chr1.2:11141823-11141842 MS.gene059112:intron 10.0%
!! TGAAAAAAATTATGATAATA+GGG - chr1.2:11141159-11141178 MS.gene059112:intron 10.0%
!! TTTATAAAAACAAAAAACTA+GGG - chr1.2:11140447-11140466 MS.gene059112:intron 10.0%
!!! CAAAAATTAAAATTTTTATG+GGG - chr1.2:11141792-11141811 MS.gene059112:intron 10.0%
!!! TTTTATTTAATTATATAGTG+TGG - chr1.2:11140733-11140752 MS.gene059112:intron 10.0%
!! AATTATATAATATACCTTGT+TGG + chr1.2:11141089-11141108 None:intergenic 15.0%
!! CTTTATAAAAACAAAAAACT+AGG - chr1.2:11140446-11140465 MS.gene059112:intron 15.0%
!! GGTTAAGAAAATTAAATATA+GGG + chr1.2:11139951-11139970 None:intergenic 15.0%
!! TAAAAGAAAATTAATATGTC+TGG - chr1.2:11140688-11140707 MS.gene059112:intron 15.0%
!! TTATTTAGACTATTATAAGA+TGG + chr1.2:11141347-11141366 None:intergenic 15.0%
!! TTCTTGATAAATGAAAAAAA+GGG + chr1.2:11140344-11140363 None:intergenic 15.0%
!!! AAAGTTGAAGAATTTTTTTT+AGG - chr1.2:11141763-11141782 MS.gene059112:intron 15.0%
!!! AAATTTAAAAGCATGTATAA+AGG + chr1.2:11139973-11139992 None:intergenic 15.0%
!!! AATTTAAAAGCATGTATAAA+GGG + chr1.2:11139972-11139991 None:intergenic 15.0%
!!! ATTTACTTCAATTTTATAGT+AGG + chr1.2:11141444-11141463 None:intergenic 15.0%
!!! ATTTAGTATCGATATATATA+TGG + chr1.2:11140378-11140397 None:intergenic 15.0%
!!! ATTTTAGTTTCTTAAACTTT+TGG - chr1.2:11141603-11141622 MS.gene059112:CDS 15.0%
!!! TAATTTTCTTTTACAAAATG+AGG + chr1.2:11140681-11140700 None:intergenic 15.0%
!!! TTGAAGAAATTTTGTATATA+AGG + chr1.2:11141381-11141400 None:intergenic 15.0%
!!! TTTACTTCAATTTTATAGTA+GGG + chr1.2:11141443-11141462 None:intergenic 15.0%
!!! TTTATACATGCTTTTAAATT+TGG - chr1.2:11139972-11139991 MS.gene059112:CDS 15.0%
!!! TTTTTTGTTTTTATAAAGCA+TGG + chr1.2:11140444-11140463 None:intergenic 15.0%
!! AAAAATTCAAAGTAAACACA+TGG - chr1.2:11141718-11141737 MS.gene059112:CDS 20.0%
!! AAAATTCAAAGTAAACACAT+GGG - chr1.2:11141719-11141738 MS.gene059112:CDS 20.0%
!! AATAATAATAACTTAGGGTT+TGG - chr1.2:11142591-11142610 MS.gene059112:intron 20.0%
!! AATTCATTTCTTAAACTTGT+GGG - chr1.2:11141650-11141669 MS.gene059112:CDS 20.0%
!! AGAAAAAATAAAATTAGCGA+TGG - chr1.2:11140543-11140562 MS.gene059112:intron 20.0%
!! AGTTATAAGTTTATCATATC+CGG - chr1.2:11142038-11142057 MS.gene059112:intron 20.0%
!! ATATTATTATTAAAGCTAGG+AGG + chr1.2:11142261-11142280 None:intergenic 20.0%
!! CAGAGAATAATAATAACTTA+GGG - chr1.2:11142586-11142605 MS.gene059112:intron 20.0%
!! GGGTTAAGAAAATTAAATAT+AGG + chr1.2:11139952-11139971 None:intergenic 20.0%
!! GGTATATTATTATTAAAGCT+AGG + chr1.2:11142264-11142283 None:intergenic 20.0%
!! GTTCTTGATAAATGAAAAAA+AGG + chr1.2:11140345-11140364 None:intergenic 20.0%
!! TAATTCATTTCTTAAACTTG+TGG - chr1.2:11141649-11141668 MS.gene059112:CDS 20.0%
!! TTATGTAAAATTTATAGGGA+AGG - chr1.2:11140805-11140824 MS.gene059112:intron 20.0%
!!! AAAACTTTGGTTTTTTACAA+AGG - chr1.2:11140989-11141008 MS.gene059112:intron 20.0%
!!! ATTTTTTTCCAATACTATGA+CGG + chr1.2:11141881-11141900 None:intergenic 20.0%
!!! TCTAAAATTTGTATGCTTTT+TGG + chr1.2:11141922-11141941 None:intergenic 20.0%
!!! TTCATACATAAAATTTTACC+TGG + chr1.2:11140278-11140297 None:intergenic 20.0%
!!! TTGGTGACTAAAAATATTAT+AGG + chr1.2:11141413-11141432 None:intergenic 20.0%
!!! TTTTGTTTTTCCACAATATA+TGG - chr1.2:11140590-11140609 MS.gene059112:intron 20.0%
! GCAGAGAATAATAATAACTT+AGG - chr1.2:11142585-11142604 MS.gene059112:intron 25.0%
! TAAGATTTGAAGAAGAAGAA+GGG + chr1.2:11142194-11142213 None:intergenic 25.0%
! TAGAGTATATTTGCAAAGTT+TGG + chr1.2:11141488-11141507 None:intergenic 25.0%
! TTTATAGTAGGGATTCAAAT+TGG + chr1.2:11141432-11141451 None:intergenic 25.0%
!! AATTTTACATGCAAAGCAAT+AGG - chr1.2:11140215-11140234 MS.gene059112:CDS 25.0%
!! TTTTATAAAGCATGGATGAA+AGG + chr1.2:11140436-11140455 None:intergenic 25.0%
!!! AATTTGTATGCTTTTTGGAT+TGG + chr1.2:11141917-11141936 None:intergenic 25.0%
!!! TGATTTTTAGGTCTAAGTTT+AGG - chr1.2:11141578-11141597 MS.gene059112:CDS 25.0%
AAATGGGAATATTGATGCAT+TGG + chr1.2:11142390-11142409 None:intergenic 30.0%
AAGAAGTTGTTAGCAAAGAA+AGG - chr1.2:11140069-11140088 MS.gene059112:CDS 30.0%
AAGATGAAAGCCATATATTG+TGG + chr1.2:11140603-11140622 None:intergenic 30.0%
AATAATAACTTAGGGTTTGG+TGG - chr1.2:11142594-11142613 MS.gene059112:intron 30.0%
ACTTCTAGATTGATATGGTA+AGG + chr1.2:11142234-11142253 None:intergenic 30.0%
ATTCAAATTAAGCCCTGAAA+TGG + chr1.2:11142445-11142464 None:intergenic 30.0%
CTTTCATCTTTCTTGTGATA+TGG - chr1.2:11140613-11140632 MS.gene059112:intron 30.0%
GTAAGATTTGAAGAAGAAGA+AGG + chr1.2:11142195-11142214 None:intergenic 30.0%
TACCATATCAATCTAGAAGT+TGG - chr1.2:11142234-11142253 MS.gene059112:intron 30.0%
TAGCATTCTTCAATACAACA+TGG + chr1.2:11141221-11141240 None:intergenic 30.0%
TCTTTCTTGTGATATGGTTA+AGG - chr1.2:11140619-11140638 MS.gene059112:intron 30.0%
TTCTTATACTGGATTTGGAA+TGG + chr1.2:11141066-11141085 None:intergenic 30.0%
! TAAGGGTGATGATGATAAAT+GGG + chr1.2:11142406-11142425 None:intergenic 30.0%
!! TTTTTGTGTGTTATTCCAGA+AGG - chr1.2:11140043-11140062 MS.gene059112:CDS 30.0%
!!! TAGTTTTGATGCATTGTTCT+TGG - chr1.2:11141980-11141999 MS.gene059112:intron 30.0%
AATAATGCAAACCCTACTCA+TGG - chr1.2:11142630-11142649 MS.gene059112:intron 35.0%
AATGATCAAGATCCACACAA+TGG + chr1.2:11142686-11142705 None:intergenic 35.0%
ACTAATAGAGCAACAAACAC+TGG - chr1.2:11140896-11140915 MS.gene059112:intron 35.0%
AGAAAGGAAGGATTTGGAAA+TGG - chr1.2:11140085-11140104 MS.gene059112:CDS 35.0%
AGAGATCGTAAATATCCAAC+AGG - chr1.2:11140866-11140885 MS.gene059112:intron 35.0%
AGTCAAAACCGTCATAGTAT+TGG - chr1.2:11141870-11141889 MS.gene059112:intron 35.0%
AGTGTTACATCAGAATTGGT+TGG - chr1.2:11140959-11140978 MS.gene059112:intron 35.0%
AGTTGTTAGCAAAGAAAGGA+AGG - chr1.2:11140073-11140092 MS.gene059112:CDS 35.0%
ATATATGCAGCAGGATGAAT+GGG - chr1.2:11142125-11142144 MS.gene059112:intron 35.0%
ATCCAGTATAAGAACCAACA+AGG - chr1.2:11141072-11141091 MS.gene059112:intron 35.0%
ATGTCGAATATATATGCAGC+AGG - chr1.2:11142116-11142135 MS.gene059112:intron 35.0%
ATTATTCTCTGCAGCAACAA+GGG + chr1.2:11142577-11142596 None:intergenic 35.0%
CAACAATGATGCAGCATTTA+GGG - chr1.2:11142289-11142308 MS.gene059112:intron 35.0%
CAACAGTGTTACATCAGAAT+TGG - chr1.2:11140955-11140974 MS.gene059112:intron 35.0%
CATTTATCATCATCACCCTT+AGG - chr1.2:11142405-11142424 MS.gene059112:CDS 35.0%
GACCAACTTCTAGATTGATA+TGG + chr1.2:11142239-11142258 None:intergenic 35.0%
GTAAGTGATGAGTTCTTCAT+CGG + chr1.2:11140165-11140184 None:intergenic 35.0%
TAAATAGACCTCACACAAAG+TGG + chr1.2:11141313-11141332 None:intergenic 35.0%
TAACAACTTCTTTGTCCTTC+TGG + chr1.2:11140061-11140080 None:intergenic 35.0%
TAGCAAAGAAAGGAAGGATT+TGG - chr1.2:11140079-11140098 MS.gene059112:CDS 35.0%
TATATATGCAGCAGGATGAA+TGG - chr1.2:11142124-11142143 MS.gene059112:intron 35.0%
TATTATTCTCTGCAGCAACA+AGG + chr1.2:11142578-11142597 None:intergenic 35.0%
! CAAAATAGTTTGTGATGACG+TGG + chr1.2:11142478-11142497 None:intergenic 35.0%
! CGTCATCACAAACTATTTTG+AGG - chr1.2:11142478-11142497 MS.gene059112:CDS 35.0%
! CTAAGGGTGATGATGATAAA+TGG + chr1.2:11142407-11142426 None:intergenic 35.0%
! GGTTGGTATGAAGAAAACTT+TGG - chr1.2:11140976-11140995 MS.gene059112:intron 35.0%
! GTTGGTTCTTATACTGGATT+TGG + chr1.2:11141071-11141090 None:intergenic 35.0%
! TCAGGGCTTAATTTGAATCT+TGG - chr1.2:11142447-11142466 MS.gene059112:CDS 35.0%
!! TACCTTGTTGGTTCTTATAC+TGG + chr1.2:11141077-11141096 None:intergenic 35.0%
AAATGCTGCATCATTGTTGG+TGG + chr1.2:11142288-11142307 None:intergenic 40.0%
ACTGGATATTGGAAAACCAC+AGG - chr1.2:11140914-11140933 MS.gene059112:intron 40.0%
AGGAAGGATTTGGAAATGGA+AGG - chr1.2:11140089-11140108 MS.gene059112:CDS 40.0%
ATATTCATGCATGACCCAGT+TGG + chr1.2:11141038-11141057 None:intergenic 40.0%
ATTTATAGGGAAGGCCAAGA+TGG - chr1.2:11140814-11140833 MS.gene059112:intron 40.0%
ATTTGCACCTGTCATCATGT+TGG + chr1.2:11142547-11142566 None:intergenic 40.0%
CCAACAATGATGCAGCATTT+AGG - chr1.2:11142288-11142307 MS.gene059112:intron 40.0%
CCAAGATGGGTACAAAAGAA+TGG - chr1.2:11140828-11140847 MS.gene059112:intron 40.0%
CCTAAATGCTGCATCATTGT+TGG + chr1.2:11142291-11142310 None:intergenic 40.0%
CTGGATATTGGAAAACCACA+GGG - chr1.2:11140915-11140934 MS.gene059112:intron 40.0%
GAGAAGGATTCACCATTTCA+GGG - chr1.2:11142430-11142449 MS.gene059112:CDS 40.0%
GAGCAACAAACACTGGATAT+TGG - chr1.2:11140903-11140922 MS.gene059112:intron 40.0%
GCCATAGTATGAGTAGTTGA+TGG + chr1.2:11142510-11142529 None:intergenic 40.0%
GCCATCAACTACTCATACTA+TGG - chr1.2:11142506-11142525 MS.gene059112:CDS 40.0%
GGCAATAGGTACAATATGCA+GGG - chr1.2:11142651-11142670 MS.gene059112:intron 40.0%
GGTAGGATGAAATCGAAATC+CGG + chr1.2:11140144-11140163 None:intergenic 40.0%
GTAGGATGAAATCGAAATCC+GGG + chr1.2:11140143-11140162 None:intergenic 40.0%
GTGTGGATCTTGATCATTAC+TGG - chr1.2:11142688-11142707 MS.gene059112:intron 40.0%
TAGAGGAGAGAAAACCAACT+GGG - chr1.2:11141021-11141040 MS.gene059112:intron 40.0%
TCTAGCACTCACTCTTCTAT+TGG - chr1.2:11141266-11141285 MS.gene059112:intron 40.0%
TGGCAATAGGTACAATATGC+AGG - chr1.2:11142650-11142669 MS.gene059112:intron 40.0%
TGTACCTATTGCCATGAGTA+GGG + chr1.2:11142644-11142663 None:intergenic 40.0%
TTATCATCATCACCCTTAGG+AGG - chr1.2:11142408-11142427 MS.gene059112:CDS 40.0%
TTGTACCTATTGCCATGAGT+AGG + chr1.2:11142645-11142664 None:intergenic 40.0%
TTTATAGGGAAGGCCAAGAT+GGG - chr1.2:11140815-11140834 MS.gene059112:intron 40.0%
! CCATTCTTTTGTACCCATCT+TGG + chr1.2:11140831-11140850 None:intergenic 40.0%
! CTATTAGTTCTCACACCTGT+TGG + chr1.2:11140884-11140903 None:intergenic 40.0%
! CTCATTTTCAGCTCTATGGA+AGG - chr1.2:11142325-11142344 MS.gene059112:CDS 40.0%
! GCAACTCATTTTCAGCTCTA+TGG - chr1.2:11142321-11142340 MS.gene059112:CDS 40.0%
! GGGCTTAATTTGAATCTTGG+AGG - chr1.2:11142450-11142469 MS.gene059112:CDS 40.0%
! GTACAATATGCAGGGTACTA+TGG - chr1.2:11142659-11142678 MS.gene059112:intron 40.0%
!! AATAACTTAGGGTTTGGTGG+TGG - chr1.2:11142597-11142616 MS.gene059112:intron 40.0%
!! GTATGAGTAGTTGATGGCAT+TGG + chr1.2:11142504-11142523 None:intergenic 40.0%
AAATCGAAATCCGGGAGGTA+GGG + chr1.2:11140135-11140154 None:intergenic 45.0%
AATCTCCTTGTCTTTCCCTG+TGG + chr1.2:11140933-11140952 None:intergenic 45.0%
ATAGACCTCACACAAAGTGG+TGG + chr1.2:11141310-11141329 None:intergenic 45.0%
ATCTCAACAAATGCGAGCCA+TGG - chr1.2:11140246-11140265 MS.gene059112:CDS 45.0%
CAAACCCTACTCATGGCAAT+AGG - chr1.2:11142637-11142656 MS.gene059112:intron 45.0%
CTAGAGGAGAGAAAACCAAC+TGG - chr1.2:11141020-11141039 MS.gene059112:intron 45.0%
GAAAACCACAGGGAAAGACA+AGG - chr1.2:11140925-11140944 MS.gene059112:intron 45.0%
GGAGAAGGATTCACCATTTC+AGG - chr1.2:11142429-11142448 MS.gene059112:CDS 45.0%
GTGAATCCTTCTCCTCCTAA+GGG + chr1.2:11142423-11142442 None:intergenic 45.0%
GTGATGAGTTCTTCATCGGT+AGG + chr1.2:11140161-11140180 None:intergenic 45.0%
TAGACCTCACACAAAGTGGT+GGG + chr1.2:11141309-11141328 None:intergenic 45.0%
TCTCAACAAATGCGAGCCAT+GGG - chr1.2:11140247-11140266 MS.gene059112:CDS 45.0%
TGTGTGTGTGTGTGTGTTTC+CGG + chr1.2:11142060-11142079 None:intergenic 45.0%
TTCAGCTCCAACATGATGAC+AGG - chr1.2:11142537-11142556 MS.gene059112:intron 45.0%
! ATTTTACCTGGAAGCTCCCA+TGG + chr1.2:11140266-11140285 None:intergenic 45.0%
!! ACTGCAGAAGTTCTAAGAGC+TGG - chr1.2:11142360-11142379 MS.gene059112:CDS 45.0%
!!! CAGTTGGTTTTCTCTCCTCT+AGG + chr1.2:11141022-11141041 None:intergenic 45.0%
!! AATATATATATTTAAGAATA+AGG - chr1.2:11141821-11141840 MS.gene059112:intron 5.0%
!! ATATATATATTTAAGAATAA+GGG - chr1.2:11141822-11141841 MS.gene059112:intron 5.0%
!! TTAATTATGTAAAATTTATA+GGG - chr1.2:11140801-11140820 MS.gene059112:intron 5.0%
!! TTTAATTATGTAAAATTTAT+AGG - chr1.2:11140800-11140819 MS.gene059112:intron 5.0%
!!! AAAAATAATTATTGATTTTT+AGG - chr1.2:11141566-11141585 MS.gene059112:CDS 5.0%
!!! AACAAAAATTAAAATTTTTA+TGG - chr1.2:11141790-11141809 MS.gene059112:intron 5.0%
!!! ACAAAAATTAAAATTTTTAT+GGG - chr1.2:11141791-11141810 MS.gene059112:intron 5.0%
AAAGAGGAAACCCTACCTCC+CGG - chr1.2:11140122-11140141 MS.gene059112:CDS 50.0%
ATGTCCCACCACTTTGTGTG+AGG - chr1.2:11141302-11141321 MS.gene059112:intron 50.0%
CACACACACACACACACACA+TGG - chr1.2:11142064-11142083 MS.gene059112:intron 50.0%
GAAATCGAAATCCGGGAGGT+AGG + chr1.2:11140136-11140155 None:intergenic 50.0%
GGAAGGAACTCGTGAGAAAG+AGG - chr1.2:11140106-11140125 MS.gene059112:CDS 50.0%
GGATGAAATCGAAATCCGGG+AGG + chr1.2:11140140-11140159 None:intergenic 50.0%
GGGTACTATGGACCATTGTG+TGG - chr1.2:11142671-11142690 MS.gene059112:intron 50.0%
GGTGAATCCTTCTCCTCCTA+AGG + chr1.2:11142424-11142443 None:intergenic 50.0%
TACAAAGGTCGTGCTCCTAG+AGG - chr1.2:11141004-11141023 MS.gene059112:intron 50.0%
TATGCAGCAGGATGAATGGG+TGG - chr1.2:11142128-11142147 MS.gene059112:intron 50.0%
TCATCACCCTTAGGAGGAGA+AGG - chr1.2:11142414-11142433 MS.gene059112:CDS 50.0%
TCTTTGCACCTGCACTCTTG+CGG + chr1.2:11142167-11142186 None:intergenic 50.0%
! AGAGTATTCCGCAAGAGTGC+AGG - chr1.2:11142156-11142175 MS.gene059112:intron 50.0%
! TGCTGCATCATTGTTGGTGG+TGG + chr1.2:11142285-11142304 None:intergenic 50.0%
!! GCAGAAGTTCTAAGAGCTGG+TGG - chr1.2:11142363-11142382 MS.gene059112:CDS 50.0%
TGCGAGCCATGGGAGCTTCC+AGG - chr1.2:11140257-11140276 MS.gene059112:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 11139873 11142725 11139873 ID=MS.gene059112
chr1.2 mRNA 11139873 11142725 11139873 ID=MS.gene059112.t1;Parent=MS.gene059112
chr1.2 exon 11142720 11142725 11142720 ID=MS.gene059112.t1.exon1;Parent=MS.gene059112.t1
chr1.2 CDS 11142720 11142725 11142720 ID=cds.MS.gene059112.t1;Parent=MS.gene059112.t1
chr1.2 exon 11142320 11142536 11142320 ID=MS.gene059112.t1.exon2;Parent=MS.gene059112.t1
chr1.2 CDS 11142320 11142536 11142320 ID=cds.MS.gene059112.t1;Parent=MS.gene059112.t1
chr1.2 exon 11141505 11141776 11141505 ID=MS.gene059112.t1.exon3;Parent=MS.gene059112.t1
chr1.2 CDS 11141505 11141776 11141505 ID=cds.MS.gene059112.t1;Parent=MS.gene059112.t1
chr1.2 exon 11139873 11140463 11139873 ID=MS.gene059112.t1.exon4;Parent=MS.gene059112.t1
chr1.2 CDS 11139873 11140463 11139873 ID=cds.MS.gene059112.t1;Parent=MS.gene059112.t1
Gene Sequence

>MS.gene059112

ATGCAAGTAAGCGAAGTCATCATCAATCAAACAAACTTTTGCACATAGCTTTTATTGTTTGAAAAAATTATAAAACCCTATATTTAATTTTCTTAACCCTTTATACATGCTTTTAAATTTGGAAAATTTTCAAGCTAGCTCATACGACAACTATTTGTACATCATGACACTTTTTGTGTGTTATTCCAGAAGGACAAAGAAGTTGTTAGCAAAGAAAGGAAGGATTTGGAAATGGAAGGAACTCGTGAGAAAGAGGAAACCCTACCTCCCGGATTTCGATTTCATCCTACCGATGAAGAACTCATCACTTACTATCTTGTAAGCAAGATTTCAGATTCTGTAAATTTTACATGCAAAGCAATAGGTGATGTAGATCTCAACAAATGCGAGCCATGGGAGCTTCCAGGTAAAATTTTATGTATGAATCTTTTGTTTAATTGAAGATTCACTTGACTCTATTTGATTTTTCCCTTTTTTTCATTTATCAAGAACAATAATAGATCCATATATATATCGATACTAAATATTTGTTTTGTAATTCATCTACTTAATTTACTTTTCCTTTCATCCATGCTTTATAAAAACAAAAAACTAGGGTTTCTTCAAGATTCTACTATTAGCTACAACAAATTCAGCAGCTAACTCATAAACACAACAATTTCTTCATACTAGAAAAAATAAAATTAGCGATGGAAATGATTGTATCATAACAAATCTTTTTGTTTTTCCACAATATATGGCTTTCATCTTTCTTGTGATATGGTTAAGGTTTACTATATACAAAATTTAATTTTATTTCATAAATCCTCATTTTGTAAAAGAAAATTAATATGTCTGGCAAATTAAATATGATAATTTAATTTTATTTAATTATATAGTGTGGTTTTCTCTAGTAAATTGAGTTTATTAATTTTTTTCTTCTAATTATTTAATTATGTAAAATTTATAGGGAAGGCCAAGATGGGTACAAAAGAATGGTATTTCTTCAGTCTAAGAGATCGTAAATATCCAACAGGTGTGAGAACTAATAGAGCAACAAACACTGGATATTGGAAAACCACAGGGAAAGACAAGGAGATTTTCAACAGTGTTACATCAGAATTGGTTGGTATGAAGAAAACTTTGGTTTTTTACAAAGGTCGTGCTCCTAGAGGAGAGAAAACCAACTGGGTCATGCATGAATATCGTATCCATTCCAAATCCAGTATAAGAACCAACAAGGTATATTATATAATTTATATCTACATAATCATAAAAAGTTAATTCATAAGCACAAAATGAAGTAATGAAAAAAATTATGATAATAGGGCGTAAACCCTATTATACATCTTTTAAATTTTACAAACCATGTTGTATTGAAGAATGCTAACAACACTTACTTTTGAACACTCTCTCTAGCACTCACTCTTCTATTGGATGAAATCAATGTATGTCCCACCACTTTGTGTGAGGTCTATTTAAATAACATGTTCCATCTTATAATAGTCTAAATAAGAATAAAAGAACCTTATATACAAAATTTCTTCAACTTTTAATTCCTATAATATTTTTAGTCACCAATTTGAATCCCTACTATAAAATTGAAGTAAATTGAGACACTATTAAAATGCTACCAAACTTTGCAAATATACTCTATGTAGTAATTTTTTTTTTTGACAAAATACTCTATGTTGTAATTAGAAGTCTCTGAAAAAAAAATAATTATTGATTTTTAGGTCTAAGTTTAGGTTATTTTAGTTTCTTAAACTTTTGGTATTTTAAAAAAAAAATCATATTTAATTCATTTCTTAAACTTGTGGGTAAGATGTTTACAATGTTCTTTAACATAACTAAAAAAATATTAAAAAAAATTCAAAGTAAACACATGGGTTAACTTAGCTATAACGAATAAAAGTTGAAGAATTTTTTTTAGGTAAAAACAAAAATTAAAATTTTTATGGGGACTAATAATATATATATTTAAGAATAAGGGGTATTGTAACTAAGATACAAGTTTAAGTCAAAACCGTCATAGTATTGGAAAAAAATCTTATGATCACAACCAATCCAAAAAGCATACAAATTTTAGAAATTTATATTTATAAATCATACTATATAATCATGCATTTAGTTTTGATGCATTGTTCTTGGTATTAAAAAATAGACTGTTAATCAATCACAAAATCAGTTATAAGTTTATCATATCCGGAAACACACACACACACACACACATGGACATAATCAACTAGTTACAATAATGATTAATGTCGAATATATATGCAGCAGGATGAATGGGTGGTAAGCAGAGTATTCCGCAAGAGTGCAGGTGCAAAGAAGTACCCTTCTTCTTCTTCAAATCTTACAAGAGCAGTCATGAATCCTTACCATATCAATCTAGAAGTTGGTCCTCCTAGCTTTAATAATAATATACCACCACCAACAATGATGCAGCATTTAGGGCTAGATTCTGCAACTCATTTTCAGCTCTATGGAAGGAACTACATCAACACTGCAGAAGTTCTAAGAGCTGGTGGACCAATGCATCAATATTCCCATTTATCATCATCACCCTTAGGAGGAGAAGGATTCACCATTTCAGGGCTTAATTTGAATCTTGGAGGTTCCACGTCATCACAAACTATTTTGAGGCCAATGCCATCAACTACTCATACTATGGCTGCTGATTTCAGCTCCAACATGATGACAGGTGCAAATAGTAATACCCTTGTTGCTGCAGAGAATAATAATAACTTAGGGTTTGGTGGTGGAGATCAAGTGAATAATGCAAACCCTACTCATGGCAATAGGTACAATATGCAGGGTACTATGGACCATTGTGTGGATCTTGATCATTACTGGCCACCTTCTTACTGA
Protein sequence

>MS.gene059112.t1

MQKDKEVVSKERKDLEMEGTREKEETLPPGFRFHPTDEELITYYLVSKISDSVNFTCKAIGDVDLNKCEPWELPGKAKMGTKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYKGRAPRGEKTNWVMHEYRIHSKSSIRTNKQDEWVVSRVFRKSAGAKKYPSSSSNLTRAVMNPYHINLEVGPPSFNNNIPPPTMMQHLGLDSATHFQLYGRNYINTAEVLRAGGPMHQYSHLSSSPLGGEGFTISGLNLNLGGSTSSQTILRPMPSTTHTMAADFSSNMMTGANSNTLVAAENNNNLGFGGGDQVNNANPTHGNRYNMQGTMDHCVDLDHYWPPSY