AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene059489

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059489.t1 MTR_1g008740 96.970 363 9 2 1 362 1 362 0.0 732
MS.gene059489.t1 MTR_1g008740 96.848 349 9 2 15 362 1 348 0.0 703
MS.gene059489.t1 MTR_3g109340 59.788 378 109 15 8 362 1 358 9.39e-125 363
MS.gene059489.t1 MTR_3g109340 59.524 378 109 16 8 362 1 357 3.85e-122 356
MS.gene059489.t1 MTR_6g084430 68.852 183 53 3 24 206 2 180 5.16e-82 253
MS.gene059489.t1 MTR_2g078700 72.903 155 38 2 27 178 23 176 5.54e-80 249
MS.gene059489.t1 MTR_4g108760 65.882 170 52 3 17 183 7 173 1.20e-76 240
MS.gene059489.t1 MTR_3g435150 65.476 168 51 4 20 183 8 172 1.09e-74 233
MS.gene059489.t1 MTR_6g032770 58.081 198 72 4 27 215 18 213 1.18e-73 233
MS.gene059489.t1 MTR_7g085260 64.535 172 54 4 27 193 17 186 2.09e-72 230
MS.gene059489.t1 MTR_6g012670 61.326 181 60 5 6 183 3 176 6.50e-72 227
MS.gene059489.t1 MTR_3g116070 70.073 137 41 0 21 157 17 153 2.75e-69 221
MS.gene059489.t1 MTR_3g070030 63.975 161 51 3 27 183 19 176 1.31e-67 217
MS.gene059489.t1 MTR_7g011130 59.412 170 50 3 30 183 22 188 8.82e-64 207
MS.gene059489.t1 MTR_7g011120 53.846 195 72 5 27 208 8 197 1.88e-60 197
MS.gene059489.t1 MTR_2g064470 57.485 167 62 4 24 187 8 168 3.84e-60 196
MS.gene059489.t1 MTR_1g069805 52.830 159 71 2 19 177 2 156 2.65e-58 190
MS.gene059489.t1 MTR_7g097090 52.866 157 70 2 19 175 2 154 1.38e-56 186
MS.gene059489.t1 MTR_4g035590 59.740 154 54 4 27 177 8 156 1.50e-56 188
MS.gene059489.t1 MTR_2g062730 53.659 164 70 4 24 184 7 167 1.57e-56 188
MS.gene059489.t1 MTR_2g080010 50.575 174 67 3 20 178 8 177 2.92e-55 185
MS.gene059489.t1 MTR_4g036030 56.494 154 60 4 27 177 7 156 3.38e-55 184
MS.gene059489.t1 MTR_4g101680 56.494 154 60 4 27 177 7 156 1.00e-54 184
MS.gene059489.t1 MTR_5g041940 50.000 180 72 5 27 193 3 177 1.07e-54 181
MS.gene059489.t1 MTR_7g085220 48.663 187 77 4 24 195 5 187 1.15e-54 183
MS.gene059489.t1 MTR_5g012080 54.545 154 65 3 27 177 7 158 1.67e-54 183
MS.gene059489.t1 MTR_7g100990 51.807 166 74 2 17 177 1 165 1.95e-54 182
MS.gene059489.t1 MTR_3g088110 52.907 172 67 4 24 188 4 168 2.13e-54 181
MS.gene059489.t1 MTR_8g059170 52.381 168 73 4 26 189 13 177 5.81e-54 181
MS.gene059489.t1 MTR_2g079990 54.037 161 66 4 26 183 15 170 8.51e-54 181
MS.gene059489.t1 MTR_6g477900 55.769 156 63 4 27 179 6 158 1.21e-53 177
MS.gene059489.t1 MTR_2g064090 57.595 158 58 6 26 178 5 158 1.48e-53 180
MS.gene059489.t1 MTR_5g021710 52.229 157 68 4 24 177 5 157 2.52e-53 180
MS.gene059489.t1 MTR_2157s0010 52.761 163 65 3 27 178 8 169 2.54e-53 177
MS.gene059489.t1 MTR_8g024480 48.370 184 79 4 24 194 12 192 2.98e-53 182
MS.gene059489.t1 MTR_4g089135 46.701 197 66 5 27 196 15 199 7.05e-53 178
MS.gene059489.t1 MTR_3g070040 57.862 159 55 6 31 183 12 164 1.25e-52 177
MS.gene059489.t1 MTR_3g064580 56.051 157 62 4 26 178 5 158 1.38e-52 185
MS.gene059489.t1 MTR_5g076850 56.410 156 62 4 26 178 5 157 2.60e-52 184
MS.gene059489.t1 MTR_1g096430 51.534 163 72 4 24 183 4 162 5.03e-52 176
MS.gene059489.t1 MTR_4g081870 50.289 173 72 5 17 182 1 166 1.17e-51 173
MS.gene059489.t1 MTR_8g094580 50.289 173 73 5 17 184 1 165 1.19e-51 173
MS.gene059489.t1 MTR_8g076110 48.765 162 76 4 24 182 3 160 1.31e-51 174
MS.gene059489.t1 MTR_2g093810 42.623 244 112 7 26 259 13 238 1.57e-51 174
MS.gene059489.t1 MTR_7g005280 49.730 185 72 6 24 195 12 188 3.63e-51 171
MS.gene059489.t1 MTR_0036s0150 52.866 157 70 2 29 183 7 161 5.00e-50 176
MS.gene059489.t1 MTR_2g079990 44.920 187 71 3 26 183 15 198 4.58e-49 169
MS.gene059489.t1 MTR_3g096920 48.235 170 80 4 24 189 4 169 8.95e-49 166
MS.gene059489.t1 MTR_1g090723 50.318 157 74 2 29 183 10 164 1.45e-48 172
MS.gene059489.t1 MTR_1g090723 50.318 157 74 2 29 183 10 164 1.63e-48 173
MS.gene059489.t1 MTR_8g467490 45.665 173 83 3 16 178 3 174 7.02e-47 164
MS.gene059489.t1 MTR_1g090723 50.000 158 74 3 29 183 10 165 8.73e-47 168
MS.gene059489.t1 MTR_5g014300 49.693 163 72 5 26 181 5 164 1.92e-46 161
MS.gene059489.t1 MTR_5g040420 45.122 164 80 2 24 178 11 173 7.34e-45 159
MS.gene059489.t1 MTR_3g093050 54.194 155 65 4 26 177 21 172 7.74e-45 162
MS.gene059489.t1 MTR_3g093050 54.194 155 65 4 26 177 21 172 1.10e-44 162
MS.gene059489.t1 MTR_4g098630 44.974 189 84 6 17 196 1 178 1.11e-44 156
MS.gene059489.t1 MTR_6g011860 43.017 179 86 4 10 178 2 174 7.47e-44 156
MS.gene059489.t1 MTR_3g096920 55.303 132 55 2 24 155 4 131 1.06e-43 154
MS.gene059489.t1 MTR_5g069030 52.597 154 67 4 27 177 25 175 1.56e-43 159
MS.gene059489.t1 MTR_4g134460 45.732 164 85 4 23 186 50 209 1.18e-42 154
MS.gene059489.t1 MTR_3g096140 49.342 152 71 4 29 177 9 157 1.76e-42 149
MS.gene059489.t1 MTR_1g090720 50.311 161 68 4 26 177 41 198 2.80e-42 154
MS.gene059489.t1 MTR_3g093040 50.323 155 71 4 26 177 107 258 3.36e-42 149
MS.gene059489.t1 MTR_5g090970 40.571 175 92 3 21 184 12 185 7.54e-42 149
MS.gene059489.t1 MTR_3g096140 48.701 154 73 4 29 179 9 159 8.09e-42 150
MS.gene059489.t1 MTR_1g097300 50.000 160 70 6 29 183 21 175 7.14e-41 151
MS.gene059489.t1 MTR_5g090970 40.571 175 91 4 21 184 12 184 3.62e-40 144
MS.gene059489.t1 MTR_2g086880 48.026 152 69 4 26 176 17 159 4.14e-40 148
MS.gene059489.t1 MTR_2g086880 48.993 149 66 4 29 176 20 159 4.89e-40 149
MS.gene059489.t1 MTR_4g075980 43.125 160 85 3 24 182 12 166 5.20e-39 140
MS.gene059489.t1 MTR_8g099750 36.652 221 118 5 27 232 14 227 5.50e-39 139
MS.gene059489.t1 MTR_2g068880 39.683 189 97 5 11 183 5 192 1.01e-38 140
MS.gene059489.t1 MTR_8g063550 45.455 154 78 4 27 177 6 156 1.34e-38 140
MS.gene059489.t1 MTR_8g063550 45.455 154 78 4 27 177 6 156 2.91e-38 142
MS.gene059489.t1 MTR_2g068920 38.830 188 99 4 11 183 5 191 2.95e-38 139
MS.gene059489.t1 MTR_8g063550 45.455 154 78 4 27 177 6 156 3.52e-38 142
MS.gene059489.t1 MTR_8g093580 43.506 154 81 4 27 177 6 156 3.65e-36 137
MS.gene059489.t1 MTR_3g098810 37.963 216 110 8 27 232 14 215 4.07e-35 129
MS.gene059489.t1 MTR_8g023840 44.667 150 76 3 27 174 11 155 8.35e-34 129
MS.gene059489.t1 MTR_4g052620 44.444 135 70 2 24 154 2 135 1.31e-33 125
MS.gene059489.t1 MTR_3g096140 45.714 140 70 4 43 179 2 138 2.37e-32 124
MS.gene059489.t1 MTR_8g094580 52.212 113 46 3 77 184 2 111 6.68e-32 120
MS.gene059489.t1 MTR_3g098810 43.972 141 74 3 27 165 14 151 7.57e-32 118
MS.gene059489.t1 MTR_8g023900 41.026 156 87 3 25 178 10 162 2.65e-31 123
MS.gene059489.t1 MTR_8g023900 37.566 189 100 6 1 177 158 340 6.02e-30 120
MS.gene059489.t1 MTR_8g023860 45.736 129 67 2 27 153 12 139 4.20e-31 122
MS.gene059489.t1 MTR_4g094302 39.752 161 77 4 27 178 11 160 5.59e-31 116
MS.gene059489.t1 MTR_2g086690 42.143 140 69 4 28 159 5 140 7.29e-31 118
MS.gene059489.t1 MTR_8g023930 40.260 154 85 3 27 178 24 172 1.67e-30 121
MS.gene059489.t1 MTR_4g094302 43.511 131 61 3 27 155 11 130 2.68e-30 114
MS.gene059489.t1 MTR_7g105170 36.257 171 97 5 25 184 2 171 2.91e-30 116
MS.gene059489.t1 MTR_8g023880 40.698 172 77 6 22 177 2 164 2.62e-29 114
MS.gene059489.t1 MTR_7g070140 55.696 79 35 0 82 160 18 96 1.19e-25 100
MS.gene059489.t1 MTR_8g093790 41.060 151 67 5 27 177 10 138 4.99e-23 95.1
MS.gene059489.t1 MTR_3g096400 35.912 181 92 7 27 194 7 176 7.26e-22 92.8
MS.gene059489.t1 MTR_7g083360 35.821 134 79 5 24 155 7 135 2.01e-18 81.6
MS.gene059489.t1 MTR_7g083330 34.351 131 79 5 27 155 18 143 3.16e-17 79.3
MS.gene059489.t1 MTR_4g088245 29.952 207 122 9 27 218 68 266 2.00e-15 76.6
MS.gene059489.t1 MTR_7g083370 32.090 134 84 4 24 155 7 135 8.51e-15 71.2
MS.gene059489.t1 MTR_7g070150 49.296 71 34 1 120 190 2 70 1.44e-14 68.9
MS.gene059489.t1 MTR_2g090735 34.118 170 85 8 27 178 49 209 5.84e-14 72.0
MS.gene059489.t1 MTR_8g102240 30.994 171 90 6 27 175 47 211 1.45e-12 68.9
MS.gene059489.t1 MTR_8g102240 30.994 171 90 6 27 175 47 211 1.45e-12 68.9
MS.gene059489.t1 MTR_1g093680 27.830 212 128 8 27 223 58 259 2.44e-11 65.1
MS.gene059489.t1 MTR_7g116460 30.000 180 112 8 33 205 11 183 5.55e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059489.t1 AT2G24430 51.685 356 104 9 21 359 10 314 1.69e-104 310
MS.gene059489.t1 AT2G24430 51.685 356 104 9 21 359 10 314 1.69e-104 310
MS.gene059489.t1 AT3G18400 73.750 160 39 2 24 183 2 158 1.94e-82 254
MS.gene059489.t1 AT5G53950 71.250 160 42 2 25 181 15 173 1.92e-79 248
MS.gene059489.t1 AT5G61430 67.647 170 49 3 22 188 11 177 6.78e-77 240
MS.gene059489.t1 AT3G15170 70.000 160 44 2 22 178 15 173 4.25e-76 237
MS.gene059489.t1 AT5G07680 68.485 165 46 3 27 188 3 164 4.74e-76 237
MS.gene059489.t1 AT5G07680 64.641 181 54 4 15 188 1 178 4.76e-76 238
MS.gene059489.t1 AT1G76420 64.671 167 58 1 16 182 11 176 6.04e-74 233
MS.gene059489.t1 AT5G39610 66.272 169 51 3 22 187 15 180 1.43e-72 227
MS.gene059489.t1 AT5G18270 69.481 154 42 3 27 177 21 172 1.77e-70 224
MS.gene059489.t1 AT5G18270 68.831 154 43 3 27 177 21 172 6.44e-70 222
MS.gene059489.t1 AT3G29035 61.202 183 64 4 8 186 5 184 3.33e-69 220
MS.gene059489.t1 AT3G04060 60.773 181 61 4 18 195 11 184 3.97e-68 218
MS.gene059489.t1 AT4G27410 53.216 171 70 5 19 183 2 168 1.49e-58 192
MS.gene059489.t1 AT4G10350 45.833 240 111 7 27 262 9 233 3.26e-58 192
MS.gene059489.t1 AT3G12977 48.792 207 80 7 24 213 15 212 9.01e-58 189
MS.gene059489.t1 AT1G33280 59.740 154 54 4 27 177 8 156 8.64e-57 187
MS.gene059489.t1 AT1G56010 47.059 204 91 5 24 214 16 215 1.52e-56 187
MS.gene059489.t1 AT4G28530 44.037 218 98 4 19 220 2 211 3.41e-55 185
MS.gene059489.t1 AT4G27410 48.936 188 69 6 19 183 2 185 3.46e-55 184
MS.gene059489.t1 AT1G12260 54.430 158 65 4 27 181 7 160 3.90e-55 184
MS.gene059489.t1 AT2G18060 35.671 328 175 11 26 332 8 320 4.86e-55 185
MS.gene059489.t1 AT2G18060 35.671 328 175 11 26 332 8 320 4.86e-55 185
MS.gene059489.t1 AT1G12260 54.430 158 65 4 27 181 7 160 5.01e-55 186
MS.gene059489.t1 AT1G62700 55.063 158 64 4 27 181 7 160 2.75e-54 184
MS.gene059489.t1 AT1G62700 55.063 158 64 4 27 181 7 160 2.75e-54 184
MS.gene059489.t1 AT3G10500 56.522 161 64 4 26 183 8 165 3.46e-54 187
MS.gene059489.t1 AT1G65910 55.280 161 66 4 26 183 5 162 3.52e-54 188
MS.gene059489.t1 AT3G04070 50.847 177 75 4 20 185 3 178 3.67e-54 182
MS.gene059489.t1 AT1G69490 53.659 164 68 4 24 182 6 166 3.69e-54 179
MS.gene059489.t1 AT1G52890 53.459 159 70 3 26 183 13 168 1.24e-53 179
MS.gene059489.t1 AT4G36160 53.548 155 65 4 26 177 9 159 1.35e-53 181
MS.gene059489.t1 AT4G36160 53.548 155 65 4 26 177 9 159 1.35e-53 181
MS.gene059489.t1 AT1G61110 51.479 169 67 4 27 182 16 182 1.37e-53 180
MS.gene059489.t1 AT4G36160 53.548 155 65 4 26 177 13 163 1.54e-53 181
MS.gene059489.t1 AT1G71930 51.592 157 69 4 24 177 6 158 2.22e-53 179
MS.gene059489.t1 AT1G71930 51.592 157 69 4 24 177 6 158 2.22e-53 179
MS.gene059489.t1 AT1G01720 53.086 162 67 4 27 183 7 164 2.71e-53 178
MS.gene059489.t1 AT3G15500 53.459 159 70 3 26 183 13 168 3.88e-53 178
MS.gene059489.t1 AT3G61910 45.455 209 82 6 24 215 8 201 4.97e-53 179
MS.gene059489.t1 AT5G62380 52.795 161 69 4 27 184 7 163 5.35e-53 179
MS.gene059489.t1 AT5G62380 52.795 161 69 4 27 184 7 163 5.35e-53 179
MS.gene059489.t1 AT3G17730 55.844 154 62 4 27 177 6 156 6.66e-53 176
MS.gene059489.t1 AT3G03200 57.051 156 60 4 26 177 5 157 6.95e-53 182
MS.gene059489.t1 AT2G46770 50.877 171 64 5 24 177 13 180 9.21e-53 179
MS.gene059489.t1 AT5G04410 55.280 161 66 4 26 183 8 165 2.81e-52 182
MS.gene059489.t1 AT1G79580 56.410 156 59 5 26 177 16 166 7.11e-52 176
MS.gene059489.t1 AT1G79580 56.410 156 59 5 26 177 16 166 7.11e-52 176
MS.gene059489.t1 AT1G79580 56.410 156 59 5 26 177 16 166 7.11e-52 176
MS.gene059489.t1 AT1G79580 56.410 156 59 5 26 177 16 166 7.11e-52 176
MS.gene059489.t1 AT1G79580 56.410 156 59 5 26 177 16 166 7.11e-52 176
MS.gene059489.t1 AT3G04070 46.632 193 75 4 20 185 3 194 9.29e-52 176
MS.gene059489.t1 AT5G17260 56.410 156 61 4 26 177 5 157 1.15e-51 179
MS.gene059489.t1 AT5G66300 51.613 155 69 3 26 177 11 162 1.16e-51 174
MS.gene059489.t1 AT5G08790 52.096 167 70 4 24 184 4 166 1.59e-51 173
MS.gene059489.t1 AT5G63790 52.976 168 67 5 24 184 47 209 6.01e-51 172
MS.gene059489.t1 AT5G63790 52.976 168 67 5 24 184 57 219 6.73e-51 172
MS.gene059489.t1 AT3G10490 45.455 209 97 7 19 214 19 223 7.70e-50 167
MS.gene059489.t1 AT1G32770 43.458 214 98 7 27 226 16 220 3.78e-49 169
MS.gene059489.t1 AT3G10480 56.329 158 58 6 26 177 26 178 4.83e-49 171
MS.gene059489.t1 AT1G77450 51.220 164 66 4 27 183 10 166 5.51e-49 166
MS.gene059489.t1 AT3G10480 55.128 156 62 5 26 177 26 177 1.57e-48 170
MS.gene059489.t1 AT3G15510 47.305 167 69 3 31 182 21 183 1.65e-48 167
MS.gene059489.t1 AT5G61430 67.826 115 32 2 77 188 2 114 2.31e-48 164
MS.gene059489.t1 AT3G10490 53.049 164 68 5 19 177 19 178 6.08e-48 168
MS.gene059489.t1 AT5G46590 51.282 156 70 4 26 177 5 158 6.08e-48 164
MS.gene059489.t1 AT4G17980 51.572 159 67 4 26 177 5 160 7.72e-48 163
MS.gene059489.t1 AT5G46590 56.818 132 53 3 26 155 5 134 1.02e-47 163
MS.gene059489.t1 AT1G33060 52.500 160 70 4 25 181 22 178 1.67e-47 171
MS.gene059489.t1 AT1G33060 52.500 160 70 4 25 181 22 178 1.91e-47 171
MS.gene059489.t1 AT4G17980 51.572 159 67 4 26 177 5 160 2.06e-47 162
MS.gene059489.t1 AT5G13180 50.318 157 73 3 27 182 14 166 2.14e-47 161
MS.gene059489.t1 AT1G54330 52.795 161 67 5 26 183 5 159 2.48e-47 162
MS.gene059489.t1 AT4G35580 53.846 156 66 4 25 177 7 159 8.15e-47 166
MS.gene059489.t1 AT4G35580 53.846 156 66 4 25 177 7 159 8.72e-47 167
MS.gene059489.t1 AT4G35580 53.846 156 66 4 25 177 7 159 1.08e-46 167
MS.gene059489.t1 AT1G26870 43.429 175 88 2 14 178 3 176 2.90e-45 160
MS.gene059489.t1 AT1G52880 50.932 161 61 4 31 177 21 177 2.98e-45 158
MS.gene059489.t1 AT1G34180 50.000 158 73 4 29 183 18 172 9.29e-45 160
MS.gene059489.t1 AT5G39820 41.489 188 85 4 14 178 7 192 1.51e-44 156
MS.gene059489.t1 AT2G02450 47.561 164 82 4 29 192 53 212 2.52e-44 157
MS.gene059489.t1 AT2G02450 47.561 164 82 4 29 192 53 212 3.19e-44 157
MS.gene059489.t1 AT1G34190 50.000 158 73 4 29 183 18 172 5.64e-44 159
MS.gene059489.t1 AT1G34180 50.000 158 73 4 29 183 18 172 6.91e-44 159
MS.gene059489.t1 AT2G33480 50.658 152 68 4 27 177 15 160 2.58e-43 151
MS.gene059489.t1 AT3G10480 47.120 191 57 7 26 177 26 211 3.32e-43 157
MS.gene059489.t1 AT5G24590 45.652 184 91 5 26 202 12 193 3.91e-43 155
MS.gene059489.t1 AT3G49530 50.000 156 73 4 25 177 11 164 6.23e-43 154
MS.gene059489.t1 AT1G34180 46.471 170 73 4 29 183 18 184 7.54e-43 155
MS.gene059489.t1 AT2G43000 44.304 158 83 3 22 177 13 167 9.04e-43 150
MS.gene059489.t1 AT2G33480 50.000 156 61 5 27 177 15 158 1.35e-42 149
MS.gene059489.t1 AT3G49530 50.314 159 68 5 25 177 11 164 1.59e-42 154
MS.gene059489.t1 AT5G64060 46.154 156 78 4 27 179 6 158 2.76e-42 151
MS.gene059489.t1 AT5G09330 49.359 156 73 4 27 179 6 158 3.60e-42 154
MS.gene059489.t1 AT5G09330 49.359 156 73 4 27 179 6 158 3.60e-42 154
MS.gene059489.t1 AT5G09330 49.359 156 73 4 27 179 6 158 3.60e-42 154
MS.gene059489.t1 AT5G09330 49.359 156 73 4 27 179 6 158 3.60e-42 154
MS.gene059489.t1 AT5G09330 49.359 156 73 4 27 179 6 158 3.60e-42 154
MS.gene059489.t1 AT1G34180 46.471 170 73 4 29 183 18 184 4.53e-42 155
MS.gene059489.t1 AT1G32870 48.370 184 78 7 7 183 29 202 1.13e-41 153
MS.gene059489.t1 AT2G27300 49.032 155 68 5 26 179 13 157 3.24e-41 147
MS.gene059489.t1 AT1G32870 51.235 162 69 5 27 183 10 166 3.30e-41 152
MS.gene059489.t1 AT1G32870 51.235 162 69 5 27 183 10 166 3.30e-41 151
MS.gene059489.t1 AT1G32510 45.783 166 80 4 27 183 6 170 1.23e-40 145
MS.gene059489.t1 AT2G17040 43.226 155 82 3 29 182 8 157 4.68e-40 143
MS.gene059489.t1 AT5G22290 44.578 166 79 5 26 190 20 173 1.15e-38 141
MS.gene059489.t1 AT1G56010 48.299 147 59 5 77 210 2 144 4.83e-37 134
MS.gene059489.t1 AT4G10350 41.753 194 95 6 73 262 7 186 2.94e-36 133
MS.gene059489.t1 AT3G12977 48.052 154 55 6 77 213 14 159 3.43e-36 131
MS.gene059489.t1 AT3G12910 38.378 185 95 6 18 184 9 192 6.01e-36 133
MS.gene059489.t1 AT4G28530 47.059 136 57 1 19 139 2 137 1.07e-35 132
MS.gene059489.t1 AT3G44290 48.413 126 61 3 29 153 16 138 2.00e-35 129
MS.gene059489.t1 AT3G44290 48.413 126 61 3 29 153 16 138 1.40e-34 130
MS.gene059489.t1 AT5G04395 44.371 151 69 3 19 155 20 169 1.15e-33 123
MS.gene059489.t1 AT3G44350 35.542 166 100 3 25 184 3 167 2.67e-27 108
MS.gene059489.t1 AT5G64530 36.782 174 78 6 27 183 3 161 8.68e-27 105
MS.gene059489.t1 AT5G64530 42.748 131 58 4 27 155 3 118 1.29e-26 103
MS.gene059489.t1 AT2G33480 54.167 96 41 2 83 177 10 103 3.30e-26 104
MS.gene059489.t1 AT3G44350 38.462 143 83 2 25 163 3 144 9.78e-26 101
MS.gene059489.t1 AT1G02230 43.846 130 66 5 28 153 4 130 2.22e-25 105
MS.gene059489.t1 AT4G01550 37.748 151 87 3 30 177 7 153 1.72e-24 104
MS.gene059489.t1 AT4G01520 34.239 184 113 4 28 207 5 184 1.75e-24 102
MS.gene059489.t1 AT3G04420 39.416 137 78 3 28 161 4 138 2.38e-24 101
MS.gene059489.t1 AT3G04420 40.602 133 74 3 28 157 4 134 3.83e-24 102
MS.gene059489.t1 AT5G22380 40.152 132 67 4 30 153 8 135 8.06e-24 98.6
MS.gene059489.t1 AT4G01540 36.306 157 92 4 30 182 7 159 9.58e-24 101
MS.gene059489.t1 AT4G01540 36.306 157 92 4 30 182 7 159 1.77e-23 101
MS.gene059489.t1 AT4G01540 35.669 157 93 4 30 182 7 159 2.34e-23 100
MS.gene059489.t1 AT4G01540 35.669 157 93 4 30 182 7 159 3.01e-23 100
MS.gene059489.t1 AT1G02250 38.462 130 73 4 28 153 4 130 1.05e-21 95.5
MS.gene059489.t1 AT3G10490 56.962 79 30 2 101 177 2 78 8.78e-21 92.4
MS.gene059489.t1 AT3G10490 56.962 79 30 2 101 177 2 78 8.78e-21 92.4
MS.gene059489.t1 AT1G02220 37.984 129 72 4 28 153 4 127 3.77e-20 91.3
MS.gene059489.t1 AT2G18060 35.374 147 83 5 106 247 2 141 6.43e-20 89.0
MS.gene059489.t1 AT2G43000 41.758 91 49 2 89 177 1 89 8.22e-19 84.0
MS.gene059489.t1 AT1G01010 37.594 133 72 5 30 153 6 136 7.67e-18 84.7
MS.gene059489.t1 AT3G04430 33.775 151 84 5 33 169 6 154 2.49e-16 77.0
MS.gene059489.t1 AT5G50820 32.192 146 72 6 27 162 17 145 4.10e-15 73.6
MS.gene059489.t1 AT5G14000 33.125 160 97 6 27 183 15 167 1.37e-14 72.4
MS.gene059489.t1 AT5G22290 45.238 84 35 3 107 190 2 74 3.82e-14 71.6
MS.gene059489.t1 AT5G14000 32.857 140 87 4 27 164 15 149 1.41e-13 68.2
MS.gene059489.t1 AT3G56530 30.612 147 98 3 23 167 48 192 4.74e-13 69.7
MS.gene059489.t1 AT5G56620 31.429 175 88 7 27 175 43 211 5.00e-12 67.0
MS.gene059489.t1 AT5G56620 31.429 175 88 7 27 175 43 211 5.04e-12 67.0
MS.gene059489.t1 AT5G56620 31.818 176 86 8 27 175 43 211 7.05e-12 66.6
MS.gene059489.t1 AT3G55210 27.647 170 105 5 26 182 10 174 2.15e-11 64.3

Find 99 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGAAGGATTCACCATTTC+AGG 0.161758 1.3:-11229928 MS.gene059489:CDS
CCAACAATGATGCAGCATTT+AGG 0.221902 1.3:-11230069 MS.gene059489:CDS
CTAAGGGTGATGATGATAAA+TGG 0.225370 1.3:+11229953 None:intergenic
GTTGGTTCTTATACTGGATT+TGG 0.259797 1.3:+11231291 None:intergenic
TACCTTGTTGGTTCTTATAC+TGG 0.266381 1.3:+11231285 None:intergenic
GCTACTCATTTCCAGCTCTA+TGG 0.284860 1.3:-11230036 MS.gene059489:CDS
CAACAATGATGCAGCATTTA+GGG 0.296732 1.3:-11230068 MS.gene059489:CDS
TAGCAAAGAAAGGAAGGATT+TGG 0.310503 1.3:-11232321 MS.gene059489:CDS
GCCATCAACTACTCATACTA+TGG 0.320155 1.3:-11229851 MS.gene059489:CDS
GTGTGGATCTTGATCATTAC+TGG 0.322379 1.3:-11229669 MS.gene059489:CDS
TCAGGGCTTAATTTGAATCT+TGG 0.354521 1.3:-11229910 MS.gene059489:CDS
CAACAGTGTTACATCAGAAT+TGG 0.355460 1.3:-11231404 MS.gene059489:CDS
GAGCAACAAACACTGGATAT+TGG 0.356961 1.3:-11231456 MS.gene059489:CDS
AATAATAATAACTTAGGGTT+TGG 0.365351 1.3:-11229766 MS.gene059489:CDS
GCAGAGAATAATAATAACTT+AGG 0.389630 1.3:-11229772 MS.gene059489:CDS
TGCGAGCCATGGGAGCTTCC+AGG 0.393548 1.3:-11232143 MS.gene059489:intron
GTACAATATGCAGGGTACTA+TGG 0.400982 1.3:-11229698 MS.gene059489:CDS
AATTATATAATATACCTTGT+TGG 0.426634 1.3:+11231273 None:intergenic
ATTCAAATTAAGCCCTGAAA+TGG 0.426887 1.3:+11229915 None:intergenic
GGTTGGTATGAAGAAAACTT+TGG 0.429083 1.3:-11231383 MS.gene059489:CDS
AATAATAACTTAGGGTTTGG+TGG 0.433273 1.3:-11229763 MS.gene059489:CDS
GTAAGATTTGAAGAAGAAGA+AGG 0.440782 1.3:+11230168 None:intergenic
CATTTATCATCATCACCCTT+AGG 0.446380 1.3:-11229952 MS.gene059489:CDS
CTATTAGTTCTCACACCTGT+TGG 0.449944 1.3:+11231478 None:intergenic
AGTTGTTAGCAAAGAAAGGA+AGG 0.451453 1.3:-11232327 MS.gene059489:CDS
CAAACCCTACTCATGGCAAT+AGG 0.453517 1.3:-11229720 MS.gene059489:CDS
TACAGTATTAATCTAGAAGT+TGG 0.456693 1.3:-11230126 MS.gene059489:CDS
GGTGAATCCTTCTCCTCCTA+AGG 0.457239 1.3:+11229936 None:intergenic
TAAGGGTGATGATGATAAAT+GGG 0.459246 1.3:+11229954 None:intergenic
ACTTCTAGATTAATACTGTA+AGG 0.463803 1.3:+11230129 None:intergenic
TTCTTATACTGGATTTGGAA+TGG 0.468387 1.3:+11231296 None:intergenic
TGGCAATAGGTACAATATGC+AGG 0.471195 1.3:-11229707 MS.gene059489:CDS
GGGCTTAATTTGAATCTTGG+AGG 0.471334 1.3:-11229907 MS.gene059489:CDS
AGAGTATTCCGCAAGAGTGC+AGG 0.472263 1.3:-11230204 MS.gene059489:CDS
AGAAAGGAAGGATTTGGAAA+TGG 0.473442 1.3:-11232315 MS.gene059489:CDS
TATATATGCAGCAGGATGAA+TGG 0.479522 1.3:-11230236 MS.gene059489:intron
GCCATAGTATGAGTAGTTGA+TGG 0.484673 1.3:+11229850 None:intergenic
AAGAAGTTGTTAGCAAAGAA+AGG 0.487064 1.3:-11232331 MS.gene059489:CDS
GATGACTTTGCTTACTTGCA+TGG 0.489341 1.3:+11232529 None:intergenic
TGTAGTTCCTTCCATAGAGC+TGG 0.490254 1.3:+11230025 None:intergenic
CTAGAGGAGAGAAAACCAAC+TGG 0.491009 1.3:-11231339 MS.gene059489:CDS
GGTAGGATGAAATCGAAATC+CGG 0.491316 1.3:+11232259 None:intergenic
AGAGATCGTAAATATCCAAC+AGG 0.491428 1.3:-11231493 MS.gene059489:CDS
CCTAAATGCTGCATCATTGT+TGG 0.501547 1.3:+11230069 None:intergenic
ATATATGCAGCAGGATGAAT+GGG 0.505037 1.3:-11230235 MS.gene059489:intron
ATTTATAGGGAAGGCCAAGA+TGG 0.507478 1.3:-11231545 MS.gene059489:intron
ATCTCAACAAATGCGAGCCA+TGG 0.513090 1.3:-11232154 MS.gene059489:CDS
TGTACCTATTGCCATGAGTA+GGG 0.521891 1.3:+11229716 None:intergenic
CAGAGAATAATAATAACTTA+GGG 0.522455 1.3:-11229771 MS.gene059489:CDS
CCAAGATGGGTACAAAAGAA+TGG 0.522857 1.3:-11231531 MS.gene059489:CDS
GGAAGGAACACGTGAGAAAG+AGG 0.523705 1.3:-11232294 MS.gene059489:CDS
TGCTGCATCATTGTTGGTGG+TGG 0.525130 1.3:+11230075 None:intergenic
AATAACTTAGGGTTTGGTGG+TGG 0.530200 1.3:-11229760 MS.gene059489:CDS
ATATTATTATTATTAAAGCT+AGG 0.532019 1.3:+11230099 None:intergenic
GAAATCGAAATCCGGGAGGT+AGG 0.532076 1.3:+11232267 None:intergenic
TTGTACCTATTGCCATGAGT+AGG 0.535715 1.3:+11229715 None:intergenic
AAATGGGAATATTGATGCAT+TGG 0.541252 1.3:+11229970 None:intergenic
ACTAATAGAGCAACAAACAC+TGG 0.544961 1.3:-11231463 MS.gene059489:CDS
AAATCGAAATCCGGGAGGTA+GGG 0.547523 1.3:+11232268 None:intergenic
TTCAGCTCCAACATGATGAC+AGG 0.548671 1.3:-11229820 MS.gene059489:CDS
GAGAAGGATTCACCATTTCA+GGG 0.553123 1.3:-11229927 MS.gene059489:CDS
TCTTTGCACCTGCACTCTTG+CGG 0.553400 1.3:+11230196 None:intergenic
TCATCACCCTTAGGAGGAGA+AGG 0.556810 1.3:-11229943 MS.gene059489:CDS
AAATGCTGCATCATTGTTGG+TGG 0.560573 1.3:+11230072 None:intergenic
TAAGATTTGAAGAAGAAGAA+GGG 0.568739 1.3:+11230169 None:intergenic
ATTATTCTCTGCAGCAACAA+GGG 0.570178 1.3:+11229783 None:intergenic
ATTTGCACCTGTCATCATGT+TGG 0.570618 1.3:+11229813 None:intergenic
GTATGAGTAGTTGATGGCAT+TGG 0.570711 1.3:+11229856 None:intergenic
GTAGGATGAAATCGAAATCC+GGG 0.573405 1.3:+11232260 None:intergenic
TTTATAGGGAAGGCCAAGAT+GGG 0.574283 1.3:-11231544 MS.gene059489:intron
AGGAAGGATTTGGAAATGGA+AGG 0.575195 1.3:-11232311 MS.gene059489:CDS
AAATAAAGTGATCAGTAAGA+AGG 0.577405 1.3:+11229643 None:intergenic
TCTCAACAAATGCGAGCCAT+GGG 0.580584 1.3:-11232153 MS.gene059489:CDS
AATCTCCTTGTCTTTCCCTG+TGG 0.581208 1.3:+11231429 None:intergenic
ACTGCAGAAGTTCTAAGAGC+TGG 0.581667 1.3:-11229997 MS.gene059489:CDS
ACTGGATATTGGAAAACCAC+AGG 0.581954 1.3:-11231445 MS.gene059489:CDS
AAAGAGGAAACCCTACCTCC+CGG 0.588423 1.3:-11232278 MS.gene059489:CDS
CTCATTTCCAGCTCTATGGA+AGG 0.590822 1.3:-11230032 MS.gene059489:CDS
TTATCATCATCACCCTTAGG+AGG 0.591927 1.3:-11229949 MS.gene059489:CDS
TATTATTCTCTGCAGCAACA+AGG 0.597751 1.3:+11229782 None:intergenic
AATAATGCAAACCCTACTCA+TGG 0.598055 1.3:-11229727 MS.gene059489:CDS
AGTGTTACATCAGAATTGGT+TGG 0.599286 1.3:-11231400 MS.gene059489:CDS
GTGAATCCTTCTCCTCCTAA+GGG 0.600976 1.3:+11229937 None:intergenic
GTGATGAGTTCTTCATCGGT+AGG 0.602022 1.3:+11232242 None:intergenic
TACAAAGGTCGTGCTCCTAG+AGG 0.602672 1.3:-11231355 MS.gene059489:CDS
GTAAGTGATGAGTTCTTCAT+CGG 0.604469 1.3:+11232238 None:intergenic
CAAAATAGTTTGTGAAGACG+TGG 0.607429 1.3:+11229882 None:intergenic
ATATTCATGCATGACCCAGT+TGG 0.607778 1.3:+11231324 None:intergenic
GGCAATAGGTACAATATGCA+GGG 0.608820 1.3:-11229706 MS.gene059489:CDS
GGGTACTATGGACCATTGTG+TGG 0.616034 1.3:-11229686 MS.gene059489:CDS
TAAAGTGATCAGTAAGAAGG+TGG 0.627141 1.3:+11229646 None:intergenic
TTATTATTATTAAAGCTAGG+AGG 0.628854 1.3:+11230102 None:intergenic
CTGGATATTGGAAAACCACA+GGG 0.650427 1.3:-11231444 MS.gene059489:CDS
TATGCAGCAGGATGAATGGG+TGG 0.662923 1.3:-11230232 MS.gene059489:intron
ATCCAGTATAAGAACCAACA+AGG 0.673356 1.3:-11231287 MS.gene059489:intron
GAAAACCACAGGGAAAGACA+AGG 0.680177 1.3:-11231434 MS.gene059489:CDS
TAGAGGAGAGAAAACCAACT+GGG 0.682123 1.3:-11231338 MS.gene059489:CDS
AATGATCAAGATCCACACAA+TGG 0.714365 1.3:+11229674 None:intergenic
GGATGAAATCGAAATCCGGG+AGG 0.762260 1.3:+11232263 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAAAATTAAAATTAGTTA+TGG - chr1.3:11230324-11230343 MS.gene059489:intron 10.0%
!! ATAATATATTTAAGAATAAG+GGG - chr1.3:11231640-11231659 MS.gene059489:intron 10.0%
!! ATATTATTATTATTAAAGCT+AGG + chr1.3:11232085-11232104 None:intergenic 10.0%
!! ATGAAAAAAATTATGATAAT+AGG - chr1.3:11230980-11230999 MS.gene059489:intron 10.0%
!! TGAAAAAAATTATGATAATA+GGG - chr1.3:11230981-11231000 MS.gene059489:intron 10.0%
!! TTTATAAAAACAAAAAACTA+GGG - chr1.3:11230228-11230247 MS.gene059489:CDS 10.0%
!!! AAAAAAAAGATTTGATTTTT+AGG - chr1.3:11231387-11231406 MS.gene059489:CDS 10.0%
!!! AAAAATTTAAACTTTTTATG+GGG - chr1.3:11231613-11231632 MS.gene059489:intron 10.0%
!!! ACAAAAATTTAAACTTTTTA+TGG - chr1.3:11231611-11231630 MS.gene059489:intron 10.0%
!!! CAAAAATTTAAACTTTTTAT+GGG - chr1.3:11231612-11231631 MS.gene059489:intron 10.0%
!!! TTTTATTTAATTATATAGTG+TGG - chr1.3:11230522-11230541 MS.gene059489:intron 10.0%
!! AACATTTAAAGATGTATAAT+AGG + chr1.3:11231014-11231033 None:intergenic 15.0%
!! AATTATATAATATACCTTGT+TGG + chr1.3:11230911-11230930 None:intergenic 15.0%
!! ACATTTAAAGATGTATAATA+GGG + chr1.3:11231013-11231032 None:intergenic 15.0%
!! CTTTATAAAAACAAAAAACT+AGG - chr1.3:11230227-11230246 MS.gene059489:CDS 15.0%
!! GGTTAAGAAAATTAAATATA+GGG + chr1.3:11229732-11229751 None:intergenic 15.0%
!! TAAAAGAAAATTAATATGTC+TGG - chr1.3:11230477-11230496 MS.gene059489:intron 15.0%
!! TTCTTGATAAATGAAAAAAA+GGG + chr1.3:11230125-11230144 None:intergenic 15.0%
!!! AAAGTTGAAGAATTTTTTTT+AGG - chr1.3:11231583-11231602 MS.gene059489:intron 15.0%
!!! AAATTTAAAAGCATGTATAA+AGG + chr1.3:11229754-11229773 None:intergenic 15.0%
!!! AATTTAAAAGCATGTATAAA+GGG + chr1.3:11229753-11229772 None:intergenic 15.0%
!!! ATTTACTTCAATTTTATAGT+AGG + chr1.3:11231266-11231285 None:intergenic 15.0%
!!! ATTTAGTATCGATATATATA+TGG + chr1.3:11230159-11230178 None:intergenic 15.0%
!!! ATTTTAGTTTCTAAAACTTT+TGG - chr1.3:11231424-11231443 MS.gene059489:CDS 15.0%
!!! TAATTTTCTTTTACAAAATG+AGG + chr1.3:11230470-11230489 None:intergenic 15.0%
!!! TTGAAGAAATTTTGTATATA+GGG + chr1.3:11231203-11231222 None:intergenic 15.0%
!!! TTTACTTCAATTTTATAGTA+GGG + chr1.3:11231265-11231284 None:intergenic 15.0%
!!! TTTTTTGTTTTTATAAAGCA+TGG + chr1.3:11230225-11230244 None:intergenic 15.0%
!! AATAATAATAACTTAGGGTT+TGG - chr1.3:11232415-11232434 MS.gene059489:intron 20.0%
!! AATTCATTTCTTAAACTTGT+GGG - chr1.3:11231472-11231491 MS.gene059489:CDS 20.0%
!! CAGAGAATAATAATAACTTA+GGG - chr1.3:11232410-11232429 MS.gene059489:intron 20.0%
!! GGGTTAAGAAAATTAAATAT+AGG + chr1.3:11229733-11229752 None:intergenic 20.0%
!! GTTCTTGATAAATGAAAAAA+AGG + chr1.3:11230126-11230145 None:intergenic 20.0%
!! TAATTCATTTCTTAAACTTG+TGG - chr1.3:11231471-11231490 MS.gene059489:CDS 20.0%
!! TTATGTAAAATTTATAGGGA+AGG - chr1.3:11230627-11230646 MS.gene059489:intron 20.0%
!! TTATTATTATTAAAGCTAGG+AGG + chr1.3:11232082-11232101 None:intergenic 20.0%
!! TTATTCAGACTATTATAAGA+TGG + chr1.3:11231169-11231188 None:intergenic 20.0%
!!! AAAACTTTGGTTTTTTACAA+AGG - chr1.3:11230811-11230830 MS.gene059489:intron 20.0%
!!! ATTTTTTTCCAATACTATGA+CGG + chr1.3:11231705-11231724 None:intergenic 20.0%
!!! GTTGAAGAAATTTTGTATAT+AGG + chr1.3:11231204-11231223 None:intergenic 20.0%
!!! TCTAAAATTTGTATGCTTTT+TGG + chr1.3:11231746-11231765 None:intergenic 20.0%
!!! TTCATACATAAAATTTTACC+TGG + chr1.3:11230059-11230078 None:intergenic 20.0%
!!! TTGGTGACTAAAAATATTAT+AGG + chr1.3:11231235-11231254 None:intergenic 20.0%
! AAGATGAAAGTCATATATTG+TGG + chr1.3:11230387-11230406 None:intergenic 25.0%
! ACTTCTAGATTAATACTGTA+AGG + chr1.3:11232055-11232074 None:intergenic 25.0%
! GCAGAGAATAATAATAACTT+AGG - chr1.3:11232409-11232428 MS.gene059489:intron 25.0%
! TAAGATTTGAAGAAGAAGAA+GGG + chr1.3:11232015-11232034 None:intergenic 25.0%
! TACAGTATTAATCTAGAAGT+TGG - chr1.3:11232055-11232074 MS.gene059489:intron 25.0%
! TAGAGTATATTTGCAAAGTT+TGG + chr1.3:11231310-11231329 None:intergenic 25.0%
! TTTATAGTAGGGATTCAAAT+TGG + chr1.3:11231254-11231273 None:intergenic 25.0%
!! AATTTTACATGCAAAGCAAT+AGG - chr1.3:11229996-11230015 MS.gene059489:CDS 25.0%
!! TTTTATAAAGCATGGATGAA+AGG + chr1.3:11230217-11230236 None:intergenic 25.0%
!!! AATTTGTATGCTTTTTGGAT+TGG + chr1.3:11231741-11231760 None:intergenic 25.0%
!!! TAGTTTTGATGCATTGTTAT+TGG - chr1.3:11231804-11231823 MS.gene059489:intron 25.0%
!!! TGATTTTTAGGTCTAAGTTT+GGG - chr1.3:11231399-11231418 MS.gene059489:CDS 25.0%
!!! TTGATTTTTAGGTCTAAGTT+TGG - chr1.3:11231398-11231417 MS.gene059489:CDS 25.0%
AAATGGGAATATTGATGCAT+TGG + chr1.3:11232214-11232233 None:intergenic 30.0%
AAGAAGTTGTTAGCAAAGAA+AGG - chr1.3:11229850-11229869 MS.gene059489:CDS 30.0%
AATAATAACTTAGGGTTTGG+TGG - chr1.3:11232418-11232437 MS.gene059489:intron 30.0%
ATTCAAATTAAGCCCTGAAA+TGG + chr1.3:11232269-11232288 None:intergenic 30.0%
CTTTCATCTTTCTTGTGATA+TGG - chr1.3:11230397-11230416 MS.gene059489:intron 30.0%
GTAAGATTTGAAGAAGAAGA+AGG + chr1.3:11232016-11232035 None:intergenic 30.0%
TAGCATTCTTCAATACAACA+TGG + chr1.3:11231042-11231061 None:intergenic 30.0%
TCTTTCTTGTGATATGGTTA+AGG - chr1.3:11230403-11230422 MS.gene059489:intron 30.0%
TTCTTATACTGGATTTGGAA+TGG + chr1.3:11230888-11230907 None:intergenic 30.0%
! TAAGGGTGATGATGATAAAT+GGG + chr1.3:11232230-11232249 None:intergenic 30.0%
!! TTTTTGTGTGTTATTCCAGA+AGG - chr1.3:11229824-11229843 MS.gene059489:CDS 30.0%
AATAATGCAAACCCTACTCA+TGG - chr1.3:11232454-11232473 MS.gene059489:intron 35.0%
AATGATCAAGATCCACACAA+TGG + chr1.3:11232510-11232529 None:intergenic 35.0%
ACTAATAGAGCAACAAACAC+TGG - chr1.3:11230718-11230737 MS.gene059489:intron 35.0%
AGAAAGGAAGGATTTGGAAA+TGG - chr1.3:11229866-11229885 MS.gene059489:CDS 35.0%
AGAGATCGTAAATATCCAAC+AGG - chr1.3:11230688-11230707 MS.gene059489:intron 35.0%
AGTGTTACATCAGAATTGGT+TGG - chr1.3:11230781-11230800 MS.gene059489:intron 35.0%
AGTTGTTAGCAAAGAAAGGA+AGG - chr1.3:11229854-11229873 MS.gene059489:CDS 35.0%
ATATATGCAGCAGGATGAAT+GGG - chr1.3:11231946-11231965 MS.gene059489:intron 35.0%
ATCCAGTATAAGAACCAACA+AGG - chr1.3:11230894-11230913 MS.gene059489:intron 35.0%
ATGTCGAATATATATGCAGC+AGG - chr1.3:11231937-11231956 MS.gene059489:intron 35.0%
ATTATTCTCTGCAGCAACAA+GGG + chr1.3:11232401-11232420 None:intergenic 35.0%
CAACAATGATGCAGCATTTA+GGG - chr1.3:11232113-11232132 MS.gene059489:intron 35.0%
CAACAGTGTTACATCAGAAT+TGG - chr1.3:11230777-11230796 MS.gene059489:intron 35.0%
CATTTATCATCATCACCCTT+AGG - chr1.3:11232229-11232248 MS.gene059489:CDS 35.0%
CTAGCATTCACTCTTCTATT+TGG - chr1.3:11231088-11231107 MS.gene059489:intron 35.0%
GTAAGTGATGAGTTCTTCAT+CGG + chr1.3:11229946-11229965 None:intergenic 35.0%
TAAATAGACCTCACACAAAG+TGG + chr1.3:11231135-11231154 None:intergenic 35.0%
TAACAACTTCTTTGTCCTTC+TGG + chr1.3:11229842-11229861 None:intergenic 35.0%
TAGCAAAGAAAGGAAGGATT+TGG - chr1.3:11229860-11229879 MS.gene059489:CDS 35.0%
TATATATGCAGCAGGATGAA+TGG - chr1.3:11231945-11231964 MS.gene059489:intron 35.0%
TATTATTCTCTGCAGCAACA+AGG + chr1.3:11232402-11232421 None:intergenic 35.0%
! CAAAATAGTTTGTGAAGACG+TGG + chr1.3:11232302-11232321 None:intergenic 35.0%
! CGTCTTCACAAACTATTTTG+AGG - chr1.3:11232302-11232321 MS.gene059489:CDS 35.0%
! CTAAGGGTGATGATGATAAA+TGG + chr1.3:11232231-11232250 None:intergenic 35.0%
! GGTTGGTATGAAGAAAACTT+TGG - chr1.3:11230798-11230817 MS.gene059489:intron 35.0%
! GTTGGTTCTTATACTGGATT+TGG + chr1.3:11230893-11230912 None:intergenic 35.0%
! TCAGGGCTTAATTTGAATCT+TGG - chr1.3:11232271-11232290 MS.gene059489:CDS 35.0%
!! TACCTTGTTGGTTCTTATAC+TGG + chr1.3:11230899-11230918 None:intergenic 35.0%
AAATGCTGCATCATTGTTGG+TGG + chr1.3:11232112-11232131 None:intergenic 40.0%
ACTGGATATTGGAAAACCAC+AGG - chr1.3:11230736-11230755 MS.gene059489:intron 40.0%
AGGAAGGATTTGGAAATGGA+AGG - chr1.3:11229870-11229889 MS.gene059489:CDS 40.0%
AGTCACAACCGTCATAGTAT+TGG - chr1.3:11231694-11231713 MS.gene059489:intron 40.0%
ATATTCATGCATGACCCAGT+TGG + chr1.3:11230860-11230879 None:intergenic 40.0%
ATTTATAGGGAAGGCCAAGA+TGG - chr1.3:11230636-11230655 MS.gene059489:intron 40.0%
ATTTGCACCTGTCATCATGT+TGG + chr1.3:11232371-11232390 None:intergenic 40.0%
CATGTATGTGTGTGTGTTTC+TGG + chr1.3:11231887-11231906 None:intergenic 40.0%
CCAACAATGATGCAGCATTT+AGG - chr1.3:11232112-11232131 MS.gene059489:intron 40.0%
CCAAGATGGGTACAAAAGAA+TGG - chr1.3:11230650-11230669 MS.gene059489:intron 40.0%
CCTAAATGCTGCATCATTGT+TGG + chr1.3:11232115-11232134 None:intergenic 40.0%
CTGGATATTGGAAAACCACA+GGG - chr1.3:11230737-11230756 MS.gene059489:intron 40.0%
GAGAAGGATTCACCATTTCA+GGG - chr1.3:11232254-11232273 MS.gene059489:CDS 40.0%
GAGCAACAAACACTGGATAT+TGG - chr1.3:11230725-11230744 MS.gene059489:intron 40.0%
GCCATAGTATGAGTAGTTGA+TGG + chr1.3:11232334-11232353 None:intergenic 40.0%
GCCATCAACTACTCATACTA+TGG - chr1.3:11232330-11232349 MS.gene059489:CDS 40.0%
GGCAATAGGTACAATATGCA+GGG - chr1.3:11232475-11232494 MS.gene059489:intron 40.0%
GGTAGGATGAAATCGAAATC+CGG + chr1.3:11229925-11229944 None:intergenic 40.0%
GTAGGATGAAATCGAAATCC+GGG + chr1.3:11229924-11229943 None:intergenic 40.0%
GTGTGGATCTTGATCATTAC+TGG - chr1.3:11232512-11232531 MS.gene059489:intron 40.0%
TAGAGGAGAGAAAACCAACT+GGG - chr1.3:11230843-11230862 MS.gene059489:intron 40.0%
TGGCAATAGGTACAATATGC+AGG - chr1.3:11232474-11232493 MS.gene059489:intron 40.0%
TGTACCTATTGCCATGAGTA+GGG + chr1.3:11232468-11232487 None:intergenic 40.0%
TTATCATCATCACCCTTAGG+AGG - chr1.3:11232232-11232251 MS.gene059489:CDS 40.0%
TTGTACCTATTGCCATGAGT+AGG + chr1.3:11232469-11232488 None:intergenic 40.0%
TTTATAGGGAAGGCCAAGAT+GGG - chr1.3:11230637-11230656 MS.gene059489:intron 40.0%
! CCATTCTTTTGTACCCATCT+TGG + chr1.3:11230653-11230672 None:intergenic 40.0%
! CTATTAGTTCTCACACCTGT+TGG + chr1.3:11230706-11230725 None:intergenic 40.0%
! GGGCTTAATTTGAATCTTGG+AGG - chr1.3:11232274-11232293 MS.gene059489:CDS 40.0%
! GTACAATATGCAGGGTACTA+TGG - chr1.3:11232483-11232502 MS.gene059489:intron 40.0%
!! AATAACTTAGGGTTTGGTGG+TGG - chr1.3:11232421-11232440 MS.gene059489:intron 40.0%
!! GTATGAGTAGTTGATGGCAT+TGG + chr1.3:11232328-11232347 None:intergenic 40.0%
AAATCGAAATCCGGGAGGTA+GGG + chr1.3:11229916-11229935 None:intergenic 45.0%
AATCTCCTTGTCTTTCCCTG+TGG + chr1.3:11230755-11230774 None:intergenic 45.0%
ATAGACCTCACACAAAGTGG+TGG + chr1.3:11231132-11231151 None:intergenic 45.0%
ATCTCAACAAATGCGAGCCA+TGG - chr1.3:11230027-11230046 MS.gene059489:CDS 45.0%
CAAACCCTACTCATGGCAAT+AGG - chr1.3:11232461-11232480 MS.gene059489:intron 45.0%
CTAGAGGAGAGAAAACCAAC+TGG - chr1.3:11230842-11230861 MS.gene059489:intron 45.0%
CTCATTTCCAGCTCTATGGA+AGG - chr1.3:11232149-11232168 MS.gene059489:CDS 45.0%
GAAAACCACAGGGAAAGACA+AGG - chr1.3:11230747-11230766 MS.gene059489:intron 45.0%
GCTACTCATTTCCAGCTCTA+TGG - chr1.3:11232145-11232164 MS.gene059489:CDS 45.0%
GGAGAAGGATTCACCATTTC+AGG - chr1.3:11232253-11232272 MS.gene059489:CDS 45.0%
GTGAATCCTTCTCCTCCTAA+GGG + chr1.3:11232247-11232266 None:intergenic 45.0%
GTGATGAGTTCTTCATCGGT+AGG + chr1.3:11229942-11229961 None:intergenic 45.0%
TAGACCTCACACAAAGTGGT+GGG + chr1.3:11231131-11231150 None:intergenic 45.0%
TCTCAACAAATGCGAGCCAT+GGG - chr1.3:11230028-11230047 MS.gene059489:CDS 45.0%
TGTAGTTCCTTCCATAGAGC+TGG + chr1.3:11232159-11232178 None:intergenic 45.0%
TTCAGCTCCAACATGATGAC+AGG - chr1.3:11232361-11232380 MS.gene059489:intron 45.0%
! ATTTTACCTGGAAGCTCCCA+TGG + chr1.3:11230047-11230066 None:intergenic 45.0%
!! ACTGCAGAAGTTCTAAGAGC+TGG - chr1.3:11232184-11232203 MS.gene059489:CDS 45.0%
!!! CAGTTGGTTTTCTCTCCTCT+AGG + chr1.3:11230844-11230863 None:intergenic 45.0%
!! AATAATATATTTAAGAATAA+GGG - chr1.3:11231639-11231658 MS.gene059489:intron 5.0%
!! TAATAATATATTTAAGAATA+AGG - chr1.3:11231638-11231657 MS.gene059489:intron 5.0%
!! TTAATTATGTAAAATTTATA+GGG - chr1.3:11230623-11230642 MS.gene059489:intron 5.0%
!! TTTAATTATGTAAAATTTAT+AGG - chr1.3:11230622-11230641 MS.gene059489:intron 5.0%
!!! GAATTTTTTAATATTTTTTT+AGG + chr1.3:11231526-11231545 None:intergenic 5.0%
AAAGAGGAAACCCTACCTCC+CGG - chr1.3:11229903-11229922 MS.gene059489:CDS 50.0%
ATGTCCCACCACTTTGTGTG+AGG - chr1.3:11231124-11231143 MS.gene059489:intron 50.0%
GAAATCGAAATCCGGGAGGT+AGG + chr1.3:11229917-11229936 None:intergenic 50.0%
GGAAGGAACACGTGAGAAAG+AGG - chr1.3:11229887-11229906 MS.gene059489:CDS 50.0%
GGATGAAATCGAAATCCGGG+AGG + chr1.3:11229921-11229940 None:intergenic 50.0%
GGGTACTATGGACCATTGTG+TGG - chr1.3:11232495-11232514 MS.gene059489:intron 50.0%
GGTGAATCCTTCTCCTCCTA+AGG + chr1.3:11232248-11232267 None:intergenic 50.0%
TACAAAGGTCGTGCTCCTAG+AGG - chr1.3:11230826-11230845 MS.gene059489:intron 50.0%
TATGCAGCAGGATGAATGGG+TGG - chr1.3:11231949-11231968 MS.gene059489:intron 50.0%
TCATCACCCTTAGGAGGAGA+AGG - chr1.3:11232238-11232257 MS.gene059489:CDS 50.0%
TCTTTGCACCTGCACTCTTG+CGG + chr1.3:11231988-11232007 None:intergenic 50.0%
! AGAGTATTCCGCAAGAGTGC+AGG - chr1.3:11231977-11231996 MS.gene059489:intron 50.0%
! TGCTGCATCATTGTTGGTGG+TGG + chr1.3:11232109-11232128 None:intergenic 50.0%
TGCGAGCCATGGGAGCTTCC+AGG - chr1.3:11230038-11230057 MS.gene059489:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 11229654 11232549 11229654 ID=MS.gene059489
chr1.3 mRNA 11229654 11232549 11229654 ID=MS.gene059489.t1;Parent=MS.gene059489
chr1.3 exon 11232544 11232549 11232544 ID=MS.gene059489.t1.exon1;Parent=MS.gene059489.t1
chr1.3 CDS 11232544 11232549 11232544 ID=cds.MS.gene059489.t1;Parent=MS.gene059489.t1
chr1.3 exon 11232144 11232360 11232144 ID=MS.gene059489.t1.exon2;Parent=MS.gene059489.t1
chr1.3 CDS 11232144 11232360 11232144 ID=cds.MS.gene059489.t1;Parent=MS.gene059489.t1
chr1.3 exon 11231288 11231559 11231288 ID=MS.gene059489.t1.exon3;Parent=MS.gene059489.t1
chr1.3 CDS 11231288 11231559 11231288 ID=cds.MS.gene059489.t1;Parent=MS.gene059489.t1
chr1.3 exon 11229654 11230247 11229654 ID=MS.gene059489.t1.exon4;Parent=MS.gene059489.t1
chr1.3 CDS 11229654 11230247 11229654 ID=cds.MS.gene059489.t1;Parent=MS.gene059489.t1
Gene Sequence

>MS.gene059489

ATGCAAGTAAGCAAAGTCATCATCAATCAAACAAACTTTTGTACATAGCTTTTATTGTTTGAAAAATTTATAAAACCCTATATTTAATTTTCTTAACCCTTTATACATGCTTTTAAATTTGAACAATTTTGAAGCTAGCTCATAAGACAACTATTTGTACATCATGACACTTTTTGTGTGTTATTCCAGAAGGACAAAGAAGTTGTTAGCAAAGAAAGGAAGGATTTGGAAATGGAAGGAACACGTGAGAAAGAGGAAACCCTACCTCCCGGATTTCGATTTCATCCTACCGATGAAGAACTCATCACTTACTATCTTGTAAGCAAGATTTCAGATTCTGTAAATTTTACATGCAAAGCAATAGGTGATGTAGATCTCAACAAATGCGAGCCATGGGAGCTTCCAGGTAAAATTTTATGTATGAATCTTTTGTTTAATTGAAGATTCACTTGACTCTATTTGATTTTTCCCTTTTTTTCATTTATCAAGAACAAGAATAGATCCATATATATATCGATACTAAATATTTGTTTTGTAATTCATCTACTTAATTTACTTTTCCTTTCATCCATGCTTTATAAAAACAAAAAACTAGGGTTTCTTCAAGATTCTACTATTAGCTACAACAAATTCAGCAGCTAACTCATAAACACAACAATTTCTTCATACTAGAAAAATTAAAATTAGTTATGGAAAAAATGATTGTATCATAACTAATCTTTTTGTTTTTCCACAATATATGACTTTCATCTTTCTTGTGATATGGTTAAGGTTTACTATAGTATATACAAAATTTTATTTTATTTCATAAATCCTCATTTTGTAAAAGAAAATTAATATGTCTGGCAAATTAAATATGATAATTTAATTTTATTTAATTATATAGTGTGGTTTTCTCTAGTAAATTGAGTTTATTAATTTTTTTTCTTCTAATTATTTTGAGTTTATTAATTTTTTTCTTCTAATTATTTAATTATGTAAAATTTATAGGGAAGGCCAAGATGGGTACAAAAGAATGGTATTTCTTCAGTCTAAGAGATCGTAAATATCCAACAGGTGTGAGAACTAATAGAGCAACAAACACTGGATATTGGAAAACCACAGGGAAAGACAAGGAGATTTTCAACAGTGTTACATCAGAATTGGTTGGTATGAAGAAAACTTTGGTTTTTTACAAAGGTCGTGCTCCTAGAGGAGAGAAAACCAACTGGGTCATGCATGAATATCGTATCCATTCCAAATCCAGTATAAGAACCAACAAGGTATATTATATAATTTATATCTACATAATCATAATAAGTTAATTCATAAGCACAAAATGAAGTAATGAAAAAAATTATGATAATAGGGCGTAAACCCTATTATACATCTTTAAATGTTACAAACCATGTTGTATTGAAGAATGCTAGCAACACTCACTTTTGAACATTCTCTCTAGCATTCACTCTTCTATTTGGATGAAATCAATGTATGTCCCACCACTTTGTGTGAGGTCTATTTAAATAACATGCTCCATCTTATAATAGTCTGAATAAGAATAAAAGAACCCTATATACAAAATTTCTTCAACTTTTACATCCTATAATATTTTTAGTCACCAATTTGAATCCCTACTATAAAATTGAAGTAAATTGAGACACTATTAAAATGCTACCAAACTTTGCAAATATACTCTATGTAGTAATTTTTTTTGACAAAATACTCTATGTTGTAATTAGAAGTCTCTGCAAAAAAAAAAAAAGATTTGATTTTTAGGTCTAAGTTTGGGTTATTTTAGTTTCTAAAACTTTTGGTATTTTAAAAAAAAAAATCATATTTAATTCATTTCTTAAACTTGTGGGTAAGATGTTTATAATGTTCTTTAACATACCTAAAAAAATATTAAAAAATTCAAAGTAAACACATGAGTTAACTTAGCTATAACGAATAAAAGTTGAAGAATTTTTTTTAGGTAAAAACAAAAATTTAAACTTTTTATGGGGACTAATAATATATTTAAGAATAAGGGGTATTGTAACTAAGATACAAGTTTAAGTCACAAGTCACAACCGTCATAGTATTGGAAAAAAATCTTATGATCGCAACCAATCCAAAAAGCATACAAATTTTAGAAATTTATATTCATAAATCATACTATATAATCATGCATTTAGTTTTGATGCATTGTTATTGGTATTAAAAAATAATAGACTGTTAATCAATCACAAAATCAGTTATAAGTTTATCATATCCAGAAACACACACACATACATGAACATAATCAACTAGTTACAATAATGATTAATGTCGAATATATATGCAGCAGGATGAATGGGTGGTAAGCAGAGTATTCCGCAAGAGTGCAGGTGCAAAGAAGTACCCTTCTTCTTCTTCAAATCTTACAAGAGCAGTCATGAATCCTTACAGTATTAATCTAGAAGTTGGTCCTCCTAGCTTTAATAATAATAATATTCCACCACCAACAATGATGCAGCATTTAGGGCTAGATTCTGCTACTCATTTCCAGCTCTATGGAAGGAACTACATCAACACTGCAGAAGTTCTAAGAGCTGGTGTACCAATGCATCAATATTCCCATTTATCATCATCACCCTTAGGAGGAGAAGGATTCACCATTTCAGGGCTTAATTTGAATCTTGGAGGATCCACGTCTTCACAAACTATTTTGAGGCCAATGCCATCAACTACTCATACTATGGCTGCTGATTTCAGCTCCAACATGATGACAGGTGCAAATAGTAATACCCTTGTTGCTGCAGAGAATAATAATAACTTAGGGTTTGGTGGTGGAGATCAAGTGAATAATGCAAACCCTACTCATGGCAATAGGTACAATATGCAGGGTACTATGGACCATTGTGTGGATCTTGATCATTACTGGCCACCTTCTTACTGA
Protein sequence

>MS.gene059489.t1

MQKDKEVVSKERKDLEMEGTREKEETLPPGFRFHPTDEELITYYLVSKISDSVNFTCKAIGDVDLNKCEPWELPGKAKMGTKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYKGRAPRGEKTNWVMHEYRIHSKSSIRTNKQDEWVVSRVFRKSAGAKKYPSSSSNLTRAVMNPYSINLEVGPPSFNNNNIPPPTMMQHLGLDSATHFQLYGRNYINTAEVLRAGVPMHQYSHLSSSPLGGEGFTISGLNLNLGGSTSSQTILRPMPSTTHTMAADFSSNMMTGANSNTLVAAENNNNLGFGGGDQVNNANPTHGNRYNMQGTMDHCVDLDHYWPPSY