Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059293.t1 | XP_024632406.1 | 98.5 | 843 | 13 | 0 | 28 | 870 | 29 | 871 | 0.00E+00 | 1697.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059293.t1 | Q9C585 | 63.3 | 852 | 290 | 10 | 25 | 861 | 26 | 869 | 1.0e-303 | 1043.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059293.t1 | A0A396JB58 | 98.5 | 843 | 13 | 0 | 28 | 870 | 29 | 871 | 0.0e+00 | 1697.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene007073 | MS.gene059293 | PPI |
MS.gene051898 | MS.gene059293 | PPI |
MS.gene24757 | MS.gene059293 | PPI |
MS.gene23062 | MS.gene059293 | PPI |
MS.gene007071 | MS.gene059293 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059293.t1 | MTR_2g087710 | 98.264 | 864 | 14 | 1 | 1 | 863 | 1 | 864 | 0.0 | 1768 |
MS.gene059293.t1 | MTR_7g106570 | 50.393 | 891 | 373 | 16 | 11 | 861 | 27 | 888 | 0.0 | 794 |
MS.gene059293.t1 | MTR_7g088760 | 43.503 | 885 | 427 | 20 | 26 | 861 | 41 | 901 | 0.0 | 665 |
MS.gene059293.t1 | MTR_1g077980 | 46.894 | 821 | 356 | 17 | 95 | 861 | 117 | 911 | 0.0 | 657 |
MS.gene059293.t1 | MTR_7g088760 | 42.683 | 902 | 427 | 21 | 26 | 861 | 41 | 918 | 0.0 | 654 |
MS.gene059293.t1 | MTR_1g014680 | 37.908 | 153 | 89 | 3 | 713 | 862 | 339 | 488 | 1.25e-22 | 104 |
MS.gene059293.t1 | MTR_3g100480 | 34.641 | 153 | 94 | 3 | 713 | 862 | 741 | 890 | 5.98e-20 | 96.3 |
MS.gene059293.t1 | MTR_5g032380 | 37.333 | 150 | 88 | 3 | 716 | 862 | 582 | 728 | 2.17e-19 | 94.4 |
MS.gene059293.t1 | MTR_4g130940 | 34.615 | 156 | 98 | 4 | 716 | 869 | 251 | 404 | 4.83e-19 | 92.8 |
MS.gene059293.t1 | MTR_4g130940 | 34.615 | 156 | 98 | 4 | 716 | 869 | 251 | 404 | 6.97e-19 | 92.4 |
MS.gene059293.t1 | MTR_5g066000 | 33.333 | 153 | 95 | 4 | 713 | 862 | 699 | 847 | 3.30e-18 | 90.5 |
MS.gene059293.t1 | MTR_6g022310 | 36.301 | 146 | 88 | 4 | 716 | 860 | 284 | 425 | 5.73e-18 | 89.4 |
MS.gene059293.t1 | MTR_6g022300 | 36.986 | 146 | 87 | 4 | 716 | 860 | 224 | 365 | 1.52e-17 | 87.8 |
MS.gene059293.t1 | MTR_2g071620 | 34.000 | 150 | 93 | 3 | 716 | 862 | 625 | 771 | 2.16e-17 | 87.8 |
MS.gene059293.t1 | MTR_1g014260 | 28.395 | 162 | 95 | 5 | 716 | 858 | 363 | 522 | 4.07e-17 | 86.7 |
MS.gene059293.t1 | MTR_1g014260 | 30.047 | 213 | 113 | 7 | 268 | 471 | 179 | 364 | 1.58e-13 | 75.1 |
MS.gene059293.t1 | MTR_3g100480 | 29.834 | 181 | 95 | 4 | 713 | 862 | 741 | 920 | 2.47e-16 | 84.7 |
MS.gene059293.t1 | MTR_6g022290 | 35.616 | 146 | 89 | 4 | 716 | 860 | 186 | 327 | 2.50e-16 | 83.6 |
MS.gene059293.t1 | MTR_5g030360 | 34.899 | 149 | 90 | 5 | 716 | 860 | 304 | 449 | 6.52e-16 | 82.8 |
MS.gene059293.t1 | MTR_5g430360 | 34.899 | 149 | 90 | 5 | 716 | 860 | 136 | 281 | 7.63e-16 | 82.0 |
MS.gene059293.t1 | MTR_4g115880 | 26.506 | 166 | 97 | 4 | 716 | 858 | 415 | 578 | 1.02e-15 | 81.6 |
MS.gene059293.t1 | MTR_4g115880 | 28.261 | 230 | 114 | 6 | 268 | 467 | 195 | 403 | 3.64e-14 | 77.0 |
MS.gene059293.t1 | MTR_8g471100 | 32.886 | 149 | 93 | 4 | 716 | 860 | 361 | 506 | 3.09e-15 | 80.1 |
MS.gene059293.t1 | MTR_3g083600 | 33.161 | 193 | 90 | 5 | 265 | 450 | 226 | 386 | 3.25e-15 | 80.9 |
MS.gene059293.t1 | MTR_3g083600 | 34.586 | 133 | 70 | 4 | 744 | 860 | 938 | 1069 | 4.31e-15 | 80.5 |
MS.gene059293.t1 | MTR_8g067060 | 32.886 | 149 | 93 | 4 | 716 | 860 | 352 | 497 | 3.50e-15 | 80.1 |
MS.gene059293.t1 | MTR_2g070390 | 32.000 | 150 | 97 | 4 | 716 | 863 | 185 | 331 | 4.83e-14 | 76.6 |
MS.gene059293.t1 | MTR_8g090190 | 31.677 | 161 | 90 | 6 | 716 | 861 | 208 | 363 | 5.52e-14 | 75.1 |
MS.gene059293.t1 | MTR_3g087140 | 27.660 | 235 | 140 | 9 | 651 | 862 | 137 | 364 | 6.34e-14 | 74.7 |
MS.gene059293.t1 | MTR_0279s0020 | 36.000 | 125 | 75 | 3 | 737 | 860 | 172 | 292 | 7.05e-13 | 71.2 |
MS.gene059293.t1 | MTR_0279s0020 | 36.000 | 125 | 75 | 3 | 737 | 860 | 163 | 283 | 8.62e-13 | 70.5 |
MS.gene059293.t1 | MTR_2g060050 | 31.897 | 116 | 78 | 1 | 747 | 861 | 417 | 532 | 2.82e-12 | 70.5 |
MS.gene059293.t1 | MTR_4g111860 | 36.364 | 132 | 74 | 5 | 738 | 860 | 260 | 390 | 3.97e-12 | 69.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059293.t1 | AT5G22030 | 64.318 | 880 | 284 | 12 | 1 | 861 | 1 | 869 | 0.0 | 1114 |
MS.gene059293.t1 | AT5G22030 | 61.063 | 922 | 287 | 15 | 1 | 861 | 1 | 911 | 0.0 | 1078 |
MS.gene059293.t1 | AT4G10590 | 45.050 | 899 | 417 | 25 | 18 | 870 | 37 | 904 | 0.0 | 670 |
MS.gene059293.t1 | AT4G10590 | 45.050 | 899 | 417 | 25 | 18 | 870 | 37 | 904 | 0.0 | 670 |
MS.gene059293.t1 | AT4G10590 | 45.050 | 899 | 417 | 25 | 18 | 870 | 37 | 904 | 0.0 | 670 |
MS.gene059293.t1 | AT4G10590 | 45.050 | 899 | 417 | 25 | 18 | 870 | 37 | 904 | 0.0 | 670 |
MS.gene059293.t1 | AT4G10570 | 46.659 | 823 | 372 | 19 | 95 | 870 | 103 | 905 | 0.0 | 668 |
MS.gene059293.t1 | AT2G40930 | 43.252 | 904 | 442 | 21 | 16 | 864 | 32 | 919 | 0.0 | 662 |
MS.gene059293.t1 | AT2G40930 | 43.252 | 904 | 442 | 21 | 16 | 864 | 32 | 919 | 0.0 | 662 |
MS.gene059293.t1 | AT1G32850 | 46.115 | 798 | 377 | 16 | 97 | 861 | 103 | 880 | 0.0 | 644 |
MS.gene059293.t1 | AT4G24560 | 37.333 | 150 | 87 | 4 | 716 | 862 | 703 | 848 | 4.88e-22 | 102 |
MS.gene059293.t1 | AT5G46740 | 37.838 | 148 | 86 | 4 | 716 | 860 | 115 | 259 | 2.06e-21 | 99.4 |
MS.gene059293.t1 | AT5G46740 | 37.838 | 148 | 86 | 4 | 716 | 860 | 324 | 468 | 2.79e-21 | 100 |
MS.gene059293.t1 | AT4G31670 | 36.242 | 149 | 89 | 3 | 716 | 861 | 329 | 474 | 3.45e-21 | 99.4 |
MS.gene059293.t1 | AT2G24640 | 36.842 | 152 | 90 | 3 | 713 | 861 | 162 | 310 | 4.64e-21 | 98.2 |
MS.gene059293.t1 | AT2G24640 | 36.842 | 152 | 90 | 3 | 713 | 861 | 332 | 480 | 1.20e-20 | 97.8 |
MS.gene059293.t1 | AT5G57990 | 34.014 | 147 | 92 | 4 | 716 | 860 | 266 | 409 | 4.65e-19 | 93.2 |
MS.gene059293.t1 | AT1G17110 | 34.459 | 148 | 91 | 3 | 716 | 860 | 603 | 747 | 1.12e-18 | 92.0 |
MS.gene059293.t1 | AT1G17110 | 34.459 | 148 | 91 | 3 | 716 | 860 | 599 | 743 | 1.13e-18 | 92.0 |
MS.gene059293.t1 | AT1G17110 | 34.459 | 148 | 91 | 3 | 716 | 860 | 599 | 743 | 1.13e-18 | 92.0 |
MS.gene059293.t1 | AT5G65450 | 35.762 | 151 | 90 | 4 | 716 | 862 | 506 | 653 | 2.08e-18 | 90.9 |
MS.gene059293.t1 | AT5G65450 | 35.762 | 151 | 90 | 4 | 716 | 862 | 487 | 634 | 2.50e-18 | 90.5 |
MS.gene059293.t1 | AT4G17895 | 34.459 | 148 | 91 | 4 | 716 | 860 | 331 | 475 | 8.12e-17 | 85.5 |
MS.gene059293.t1 | AT2G32780 | 30.500 | 200 | 113 | 4 | 268 | 464 | 200 | 376 | 2.21e-16 | 84.7 |
MS.gene059293.t1 | AT2G32780 | 35.338 | 133 | 69 | 4 | 745 | 861 | 952 | 1083 | 1.59e-13 | 75.5 |
MS.gene059293.t1 | AT1G04860 | 34.239 | 184 | 85 | 5 | 269 | 446 | 230 | 383 | 2.76e-16 | 84.3 |
MS.gene059293.t1 | AT1G04860 | 36.434 | 129 | 69 | 4 | 745 | 861 | 830 | 957 | 3.51e-13 | 74.3 |
MS.gene059293.t1 | AT5G10790 | 26.519 | 181 | 105 | 5 | 716 | 870 | 233 | 411 | 1.64e-15 | 80.5 |
MS.gene059293.t1 | AT5G10790 | 26.519 | 181 | 105 | 5 | 716 | 870 | 362 | 540 | 3.01e-15 | 80.1 |
MS.gene059293.t1 | AT4G30890 | 37.607 | 117 | 70 | 3 | 747 | 861 | 436 | 551 | 1.90e-14 | 77.8 |
MS.gene059293.t1 | AT4G30890 | 37.607 | 117 | 70 | 3 | 747 | 861 | 436 | 551 | 1.90e-14 | 77.8 |
MS.gene059293.t1 | AT4G30890 | 37.607 | 117 | 70 | 3 | 747 | 861 | 436 | 551 | 1.90e-14 | 77.8 |
MS.gene059293.t1 | AT2G22310 | 35.172 | 145 | 82 | 5 | 716 | 857 | 174 | 309 | 2.85e-13 | 72.4 |
MS.gene059293.t1 | AT2G22310 | 35.172 | 145 | 82 | 5 | 716 | 857 | 169 | 304 | 3.20e-13 | 72.4 |
MS.gene059293.t1 | AT2G22310 | 35.172 | 145 | 82 | 5 | 716 | 857 | 206 | 341 | 4.96e-13 | 72.0 |
MS.gene059293.t1 | AT4G39910 | 32.278 | 158 | 88 | 5 | 716 | 858 | 211 | 364 | 6.60e-13 | 71.6 |
MS.gene059293.t1 | AT3G14400 | 30.667 | 150 | 99 | 4 | 716 | 863 | 191 | 337 | 1.49e-11 | 68.6 |
Find 193 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTCTGGAATTGCAAGTTTA+TGG | 0.107017 | 2.2:-11432803 | MS.gene059293:CDS |
GTGGCTCATTCATTAATATT+TGG | 0.146474 | 2.2:+11428024 | None:intergenic |
GGTTCAGATACCATTGTAAA+TGG | 0.151238 | 2.2:-11428116 | MS.gene059293:CDS |
TATTGTACAGTTACGCATTT+TGG | 0.159872 | 2.2:-11433949 | MS.gene059293:intron |
AACGGTGAAGTGGGTGTTTC+TGG | 0.177673 | 2.2:-11435649 | MS.gene059293:CDS |
TTGGAGACTTCCTGAAATTT+TGG | 0.188186 | 2.2:-11427163 | MS.gene059293:CDS |
ATTCCAAATGCCTTCCAATT+TGG | 0.218837 | 2.2:+11428305 | None:intergenic |
AATGAGCCACTTACAATAAA+TGG | 0.229299 | 2.2:-11428011 | MS.gene059293:CDS |
TACCGATTTCCGAACGATAA+TGG | 0.239455 | 2.2:-11429622 | MS.gene059293:CDS |
TCTTAGCACTGCATGCTCTT+TGG | 0.244422 | 2.2:-11429886 | MS.gene059293:CDS |
AAACTAACGTTGATTTATAT+TGG | 0.246388 | 2.2:+11430096 | None:intergenic |
ACCGATTTCCGAACGATAAT+GGG | 0.250885 | 2.2:-11429621 | MS.gene059293:CDS |
ATTGAAGGGGTTGCAGATTC+TGG | 0.253069 | 2.2:-11428137 | MS.gene059293:CDS |
GCAATATATCTATGGGAAAT+TGG | 0.257510 | 2.2:-11428330 | MS.gene059293:CDS |
AGATGCAATGCCAGTGGATT+TGG | 0.263536 | 2.2:-11435806 | MS.gene059293:CDS |
CTTAGCACTGCATGCTCTTT+GGG | 0.267099 | 2.2:-11429885 | MS.gene059293:CDS |
TATGCTATCAGTAACCATTT+TGG | 0.269654 | 2.2:-11427003 | MS.gene059293:CDS |
AGTCTCTGTAATATTGTAAA+TGG | 0.279862 | 2.2:-11428269 | MS.gene059293:CDS |
CTAGCAAGAAGTTAGATCTT+TGG | 0.280932 | 2.2:-11427182 | MS.gene059293:CDS |
AGATGAATGACCAAAATTTC+AGG | 0.284995 | 2.2:+11427153 | None:intergenic |
GCTGGTTCCTTGGGACTAAC+TGG | 0.296531 | 2.2:-11432656 | MS.gene059293:CDS |
CCCCATTATCGTTCGGAAAT+CGG | 0.298396 | 2.2:+11429620 | None:intergenic |
TTCAGCAACCGACACTGATA+TGG | 0.302256 | 2.2:-11434679 | MS.gene059293:CDS |
TGGCTCATTCATTAATATTT+GGG | 0.302690 | 2.2:+11428025 | None:intergenic |
AAGAAGTTGCCGATGAATAT+TGG | 0.315259 | 2.2:-11432017 | MS.gene059293:CDS |
TTCTGGAATTGCAAGTTTAT+GGG | 0.333472 | 2.2:-11432802 | MS.gene059293:CDS |
GAGATTTACTTAGGAAGTTA+TGG | 0.335089 | 2.2:-11432353 | MS.gene059293:CDS |
CGTTAGTTTGTCCTGTTTGT+AGG | 0.335102 | 2.2:-11430082 | MS.gene059293:CDS |
ATGGGAAATTGGCTCCAAAT+TGG | 0.339641 | 2.2:-11428319 | MS.gene059293:CDS |
CCTGGTGAAGCTGGTTCCTT+GGG | 0.342259 | 2.2:-11432665 | MS.gene059293:CDS |
GCTCCAAATTGGAAGGCATT+TGG | 0.346234 | 2.2:-11428308 | MS.gene059293:CDS |
TCTGTCAGGCAATATATCTA+TGG | 0.348630 | 2.2:-11428338 | MS.gene059293:intron |
TCCGCAATTTGTATCTGAAT+TGG | 0.349264 | 2.2:-11428238 | MS.gene059293:CDS |
TGAATATTGGAATTATCATT+TGG | 0.354078 | 2.2:-11432004 | MS.gene059293:CDS |
CCCTGGTGAAGCTGGTTCCT+TGG | 0.354417 | 2.2:-11432666 | MS.gene059293:CDS |
ATGTTATTAATTATCTTCAT+AGG | 0.356151 | 2.2:+11435733 | None:intergenic |
TTCTGGTGACATGTGGTTGC+AGG | 0.358697 | 2.2:-11435608 | MS.gene059293:CDS |
GTGTGTAATGATAAGACTTC+TGG | 0.365303 | 2.2:+11427028 | None:intergenic |
TGAAGTAAGAATAAGCAAAA+AGG | 0.366884 | 2.2:-11434601 | MS.gene059293:intron |
TCGATACATACAGAATCTTC+TGG | 0.368499 | 2.2:-11432819 | MS.gene059293:intron |
AACCCTCCATTTATTGTAAG+TGG | 0.371484 | 2.2:+11428005 | None:intergenic |
ATCCACACTGAACAGTTTGC+AGG | 0.375869 | 2.2:+11434075 | None:intergenic |
TTGTTGTTGTTGTTTGAGTC+TGG | 0.377870 | 2.2:+11436089 | None:intergenic |
TTTGGAACAGAAATTGTATA+TGG | 0.381593 | 2.2:+11429939 | None:intergenic |
GTAACTAACCACATGTCTTC+TGG | 0.382878 | 2.2:+11427807 | None:intergenic |
GGAAGAATCGCGGAACGCTT+TGG | 0.385158 | 2.2:-11435674 | MS.gene059293:CDS |
ACTAAACTGAGGTGCAAATC+TGG | 0.386620 | 2.2:+11432281 | None:intergenic |
AGATTTACTTAGGAAGTTAT+GGG | 0.389219 | 2.2:-11432352 | MS.gene059293:CDS |
CTCTCAAAGGCAGTCTGATC+AGG | 0.393958 | 2.2:-11433868 | MS.gene059293:CDS |
ATATACCTCGGCTACTAATA+AGG | 0.394899 | 2.2:+11429851 | None:intergenic |
TGTTCCTCAGAAGATTCTTC+AGG | 0.413260 | 2.2:-11436125 | MS.gene059293:CDS |
GTTCTACATAACAGATGATA+AGG | 0.414409 | 2.2:-11428063 | MS.gene059293:CDS |
TCATCGGCAACTTCTTCATC+TGG | 0.420100 | 2.2:+11432024 | None:intergenic |
TGTTTAGGCCCTGGTGAAGC+TGG | 0.420140 | 2.2:-11432674 | MS.gene059293:CDS |
AGCTTTGATTTGAACATCCT+TGG | 0.427768 | 2.2:+11432306 | None:intergenic |
CCATCCTTTGCTTCTACGTA+AGG | 0.433957 | 2.2:+11432057 | None:intergenic |
TTGACATTCTGTTTAGGCCC+TGG | 0.434315 | 2.2:-11432683 | MS.gene059293:CDS |
CTTTATCTTCTCCTTGCTGA+TGG | 0.437116 | 2.2:+11426537 | None:intergenic |
GGTGAGATAGCGTCGGCGTT+TGG | 0.437119 | 2.2:-11432375 | MS.gene059293:CDS |
CCGCATTGTTGTTGAAGGTA+GGG | 0.441376 | 2.2:+11430016 | None:intergenic |
AGCTCAGGCTTTCTGTTCAA+AGG | 0.443396 | 2.2:-11434638 | MS.gene059293:CDS |
GATTGTATATGCGTCTTCGC+CGG | 0.446458 | 2.2:-11435770 | MS.gene059293:CDS |
AGATTTGCACCTCAGTTTAG+TGG | 0.447023 | 2.2:-11432279 | MS.gene059293:CDS |
AGTTCTTTGACATTCTGTTT+AGG | 0.447676 | 2.2:-11432689 | MS.gene059293:CDS |
CTTAGGAAGTTATGGGCTCC+TGG | 0.448104 | 2.2:-11432345 | MS.gene059293:CDS |
ATGTATATCCTTTACAGCTC+AGG | 0.454255 | 2.2:-11434653 | MS.gene059293:CDS |
ATTGTATATGCGTCTTCGCC+GGG | 0.455825 | 2.2:-11435769 | MS.gene059293:CDS |
AGAAAATAGTCAACAAGCTT+CGG | 0.456270 | 2.2:+11432572 | None:intergenic |
TCGCGGAACGCTTTGGAAAA+CGG | 0.457995 | 2.2:-11435667 | MS.gene059293:CDS |
TCAGCAACCGACACTGATAT+GGG | 0.459582 | 2.2:-11434678 | MS.gene059293:CDS |
TTACAGAGACTAGCCACAAT+AGG | 0.460308 | 2.2:+11428281 | None:intergenic |
CTTCTTGCAAGAATGTTTCA+AGG | 0.463039 | 2.2:+11427841 | None:intergenic |
ATCAATGATAATGAATCAGC+TGG | 0.467066 | 2.2:+11429670 | None:intergenic |
TCATAAAGCAAGTATTTCCT+AGG | 0.468184 | 2.2:+11432624 | None:intergenic |
ATGAATCAGCTGGATCTTCA+AGG | 0.469226 | 2.2:+11429680 | None:intergenic |
CGGCGTTTGGAGATTTACTT+AGG | 0.472991 | 2.2:-11432362 | MS.gene059293:CDS |
CCCAAGGAACCAGCTTCACC+AGG | 0.474693 | 2.2:+11432665 | None:intergenic |
CACATACGTTCATGCCCAAT+GGG | 0.475725 | 2.2:+11432516 | None:intergenic |
TTTGCTTATTCTTACTTCAA+AGG | 0.476276 | 2.2:+11434605 | None:intergenic |
GATTTGCACCTCAGTTTAGT+GGG | 0.476472 | 2.2:-11432278 | MS.gene059293:CDS |
GTTCAGATACCATTGTAAAT+GGG | 0.478768 | 2.2:-11428115 | MS.gene059293:CDS |
GGCAATGATAAGTACATGAA+TGG | 0.479575 | 2.2:+11430038 | None:intergenic |
ATTGTCCGCATTGTTGTTGA+AGG | 0.479960 | 2.2:+11430011 | None:intergenic |
ACAGACACCTTCCTACAAAC+AGG | 0.482471 | 2.2:+11430071 | None:intergenic |
TACGCCTTCAGATGGAGAAA+TGG | 0.484947 | 2.2:-11428087 | MS.gene059293:CDS |
ATCAATTCTGACAACCCATT+GGG | 0.484985 | 2.2:-11432530 | MS.gene059293:CDS |
TGTCAGACTCAATGAGATGT+AGG | 0.485462 | 2.2:-11432778 | MS.gene059293:CDS |
TTGAACATCCTTGGTGCCAC+AGG | 0.487227 | 2.2:+11432315 | None:intergenic |
TCTTCGATCGAATCTTGTAA+TGG | 0.488015 | 2.2:+11428209 | None:intergenic |
ACAGAAAGCCTGAGCTGTAA+AGG | 0.489646 | 2.2:+11434645 | None:intergenic |
CGATCGAATCTTGTAATGGA+TGG | 0.492720 | 2.2:+11428213 | None:intergenic |
CGCATTGTTGTTGAAGGTAG+GGG | 0.496070 | 2.2:+11430017 | None:intergenic |
GAAGAAGTTGCGGAAATTGA+AGG | 0.499114 | 2.2:-11428152 | MS.gene059293:CDS |
AAGCTAGACTTGCAGACCTC+AGG | 0.501594 | 2.2:+11427906 | None:intergenic |
TTGTCAGCTTATATTACCCA+TGG | 0.508433 | 2.2:-11427054 | MS.gene059293:CDS |
GATAAGACTTCTGGTTCCCA+TGG | 0.508536 | 2.2:+11427037 | None:intergenic |
GCTCAGGCTTTCTGTTCAAA+GGG | 0.508712 | 2.2:-11434637 | MS.gene059293:CDS |
CGCTTTGGAAAACGGTGAAG+TGG | 0.511034 | 2.2:-11435659 | MS.gene059293:CDS |
TGTAATGTTAGGTATTGTCC+TGG | 0.514953 | 2.2:-11427225 | MS.gene059293:intron |
CTGTCAGGCAATATATCTAT+GGG | 0.516243 | 2.2:-11428337 | MS.gene059293:intron |
GGTGCCACAGGACTTGCGCC+AGG | 0.518582 | 2.2:+11432327 | None:intergenic |
GCTACTAATAAGGTCTCGTC+AGG | 0.525628 | 2.2:+11429861 | None:intergenic |
TTCTTCTTATCCAAATCCAC+TGG | 0.528485 | 2.2:+11435796 | None:intergenic |
AAGAAGTTGCGGAAATTGAA+GGG | 0.529828 | 2.2:-11428151 | MS.gene059293:CDS |
AGTGGATTTGGATAAGAAGA+AGG | 0.531027 | 2.2:-11435794 | MS.gene059293:CDS |
ACAATTTCTGTTCCAAAACA+TGG | 0.532190 | 2.2:-11429933 | MS.gene059293:CDS |
TCACATACGTTCATGCCCAA+TGG | 0.533005 | 2.2:+11432515 | None:intergenic |
AGTTTGTCCTGTTTGTAGGA+AGG | 0.533723 | 2.2:-11430078 | MS.gene059293:CDS |
GGCTCCTGGCGCAAGTCCTG+TGG | 0.533845 | 2.2:-11432331 | MS.gene059293:CDS |
GAGTCTATTTCGTTCCTCAC+AGG | 0.533845 | 2.2:-11436061 | MS.gene059293:intron |
GACAAATCAAGATTATCCAC+AGG | 0.533960 | 2.2:+11427072 | None:intergenic |
AATCAATTCTGACAACCCAT+TGG | 0.534616 | 2.2:-11432531 | MS.gene059293:CDS |
TTTATCTTCTCCTTGCTGAT+GGG | 0.536636 | 2.2:+11426538 | None:intergenic |
TTCTACATAACAGATGATAA+GGG | 0.538536 | 2.2:-11428062 | MS.gene059293:CDS |
TCTTCGCCGGGTTCATCATA+CGG | 0.538949 | 2.2:-11435757 | MS.gene059293:CDS |
GGGGCGTCCCCATTATCGTT+CGG | 0.540859 | 2.2:+11429613 | None:intergenic |
GCGTATGTGTTAAGCACTGA+AGG | 0.542219 | 2.2:+11432594 | None:intergenic |
TTCTTGCAAGAAGAACCTCT+TGG | 0.546435 | 2.2:-11427831 | MS.gene059293:CDS |
AGGCACTTATACAGAGAGAC+TGG | 0.547953 | 2.2:+11427861 | None:intergenic |
TGTGTGTTTCAGGTGGTGGA+AGG | 0.548237 | 2.2:-11435836 | MS.gene059293:intron |
TCCGCATTGTTGTTGAAGGT+AGG | 0.549476 | 2.2:+11430015 | None:intergenic |
GATTTATAAAGACGACGAGA+GGG | 0.552331 | 2.2:+11429593 | None:intergenic |
CGCTGCACGTGCTTGTATGT+TGG | 0.553847 | 2.2:-11427977 | MS.gene059293:CDS |
ATGATAATTCCAATATTCAT+CGG | 0.554242 | 2.2:+11432008 | None:intergenic |
GTTGTTAGTAACACTTGTGA+TGG | 0.556079 | 2.2:-11429978 | MS.gene059293:CDS |
GGGTTAGATACGCCTTCAGA+TGG | 0.557736 | 2.2:-11428095 | MS.gene059293:CDS |
GTGAAGTGGGTGTTTCTGGA+AGG | 0.559794 | 2.2:-11435645 | MS.gene059293:CDS |
AGACTGCCTTTGAGAGTCTG+TGG | 0.561067 | 2.2:+11433875 | None:intergenic |
CTTTGGTTTCTGGTGACATG+TGG | 0.564371 | 2.2:-11435615 | MS.gene059293:CDS |
TTGTAATCCAGTTAGTCCCA+AGG | 0.565304 | 2.2:+11432649 | None:intergenic |
TGAAGTGGGTGTTTCTGGAA+GGG | 0.565506 | 2.2:-11435644 | MS.gene059293:CDS |
CGTGTTTAATCTTCAGAGAG+AGG | 0.569157 | 2.2:-11435695 | MS.gene059293:CDS |
GACTGCCTTTGAGAGTCTGT+GGG | 0.570664 | 2.2:+11433876 | None:intergenic |
GGCATTTGGAATTCCTATTG+TGG | 0.574215 | 2.2:-11428294 | MS.gene059293:CDS |
GCTTTCTAGTTCGTTGCCTG+AGG | 0.576421 | 2.2:-11427922 | MS.gene059293:CDS |
AACTCCATTTCTCCATCTGA+AGG | 0.577074 | 2.2:+11428083 | None:intergenic |
TACAGAGAGACTGGTTCTTG+AGG | 0.577321 | 2.2:+11427870 | None:intergenic |
GTGGATTTGGATAAGAAGAA+GGG | 0.583630 | 2.2:-11435793 | MS.gene059293:CDS |
TGTCAGCTTATATTACCCAT+GGG | 0.583734 | 2.2:-11427053 | MS.gene059293:CDS |
ATCACAAGTGTTACTAACAA+CGG | 0.584521 | 2.2:+11429980 | None:intergenic |
CGTCTTTATAAATCAACGAA+TGG | 0.584605 | 2.2:-11429584 | MS.gene059293:CDS |
GACTCAATGAGATGTAGGGA+AGG | 0.587033 | 2.2:-11432773 | MS.gene059293:CDS |
CCGATTTCCGAACGATAATG+GGG | 0.588205 | 2.2:-11429620 | MS.gene059293:CDS |
GTCAGACTCAATGAGATGTA+GGG | 0.589104 | 2.2:-11432777 | MS.gene059293:CDS |
TGTAGCATGGTGGTGATCAA+TGG | 0.590484 | 2.2:-11426588 | MS.gene059293:intron |
ATGTGCCCACAGACTCTCAA+AGG | 0.590655 | 2.2:-11433881 | MS.gene059293:CDS |
TGAGAGAACGGAAGAAGTTG+CGG | 0.592606 | 2.2:-11428162 | MS.gene059293:CDS |
ATTTATAAAGACGACGAGAG+GGG | 0.600007 | 2.2:+11429594 | None:intergenic |
TACATCTCCCATATCAGTGT+CGG | 0.602054 | 2.2:+11434671 | None:intergenic |
TGATTTATAAAGACGACGAG+AGG | 0.602470 | 2.2:+11429592 | None:intergenic |
TCTTCTGTAGAAAAGAACAT+AGG | 0.605214 | 2.2:+11426504 | None:intergenic |
GAAATTGGCTCCAAATTGGA+AGG | 0.606321 | 2.2:-11428315 | MS.gene059293:CDS |
AGTGCTTCAATGAAGATGAA+TGG | 0.608985 | 2.2:-11432734 | MS.gene059293:CDS |
TAAGCCTTACGTAGAAGCAA+AGG | 0.615015 | 2.2:-11432061 | MS.gene059293:CDS |
GAGCCACTTACAATAAATGG+AGG | 0.615959 | 2.2:-11428008 | MS.gene059293:CDS |
CTAACTGGATTACAAAACCT+AGG | 0.616661 | 2.2:-11432641 | MS.gene059293:CDS |
CTTTATAAATCAACGAATGG+AGG | 0.616876 | 2.2:-11429581 | MS.gene059293:CDS |
CGAGACCTTATTAGTAGCCG+AGG | 0.618106 | 2.2:-11429856 | MS.gene059293:intron |
GTTCAGTGTGGATTCAGAGA+TGG | 0.618829 | 2.2:-11434065 | MS.gene059293:intron |
TTGTGTTGTGTCTGAGAGAA+CGG | 0.620372 | 2.2:-11428174 | MS.gene059293:CDS |
CGTATCTAACCCATTTACAA+TGG | 0.621810 | 2.2:+11428106 | None:intergenic |
GCTTTGGAAAACGGTGAAGT+GGG | 0.625332 | 2.2:-11435658 | MS.gene059293:CDS |
GTAGAAGCAAAGGATGGAGA+TGG | 0.630897 | 2.2:-11432051 | MS.gene059293:CDS |
TGGATTTGGATAAGAAGAAG+GGG | 0.632219 | 2.2:-11435792 | MS.gene059293:CDS |
ATAAGACTTCTGGTTCCCAT+GGG | 0.633948 | 2.2:+11427038 | None:intergenic |
TCAAAGGCAGTCTGATCAGG+AGG | 0.634041 | 2.2:-11433865 | MS.gene059293:intron |
CCTTGCTGATGGGATAGACA+CGG | 0.634493 | 2.2:+11426548 | None:intergenic |
CCTTACGTAGAAGCAAAGGA+TGG | 0.637038 | 2.2:-11432057 | MS.gene059293:CDS |
TGCACAAGATGCAATGCCAG+TGG | 0.639892 | 2.2:-11435812 | MS.gene059293:CDS |
ACCAATTCAGATACAAATTG+CGG | 0.640098 | 2.2:+11428237 | None:intergenic |
TCTACATAACAGATGATAAG+GGG | 0.640163 | 2.2:-11428061 | MS.gene059293:CDS |
ACTCAATGAGATGTAGGGAA+GGG | 0.641133 | 2.2:-11432772 | MS.gene059293:CDS |
CACATGTCTTCTGGTCCAAG+AGG | 0.643595 | 2.2:+11427816 | None:intergenic |
CTCTTGGACCAGAAGACATG+TGG | 0.644361 | 2.2:-11427815 | MS.gene059293:intron |
AGAAGTTGCGGAAATTGAAG+GGG | 0.648245 | 2.2:-11428150 | MS.gene059293:CDS |
GTTACCTGAAGAATCTTCTG+AGG | 0.648796 | 2.2:+11436121 | None:intergenic |
AGCCACTTACAATAAATGGA+GGG | 0.649470 | 2.2:-11428007 | MS.gene059293:CDS |
CGTATGTGTTAAGCACTGAA+GGG | 0.649480 | 2.2:+11432595 | None:intergenic |
CAACATACAAGCACGTGCAG+CGG | 0.652163 | 2.2:+11427978 | None:intergenic |
GCGCAAGTCCTGTGGCACCA+AGG | 0.655432 | 2.2:-11432323 | MS.gene059293:CDS |
TTCAGAGAGAGGAAGAATCG+CGG | 0.659754 | 2.2:-11435684 | MS.gene059293:CDS |
ATAGGACCGTATGATGAACC+CGG | 0.664092 | 2.2:+11435751 | None:intergenic |
CCAAGGAACCAGCTTCACCA+GGG | 0.669980 | 2.2:+11432666 | None:intergenic |
CTTCAAGGAAACGTATGATG+CGG | 0.671013 | 2.2:+11429695 | None:intergenic |
AATGCAACGAAAGATGACAA+AGG | 0.681752 | 2.2:-11434705 | MS.gene059293:CDS |
CCGTGTCTATCCCATCAGCA+AGG | 0.689942 | 2.2:-11426548 | MS.gene059293:CDS |
ACAAATCAAGATTATCCACA+GGG | 0.691346 | 2.2:+11427073 | None:intergenic |
GACATTGGTTGACTTCCCTG+TGG | 0.698262 | 2.2:-11427088 | MS.gene059293:CDS |
AGCCTGCAAACTGTTCAGTG+TGG | 0.702912 | 2.2:-11434077 | MS.gene059293:CDS |
TGTATGAACCCTAACCTGTG+AGG | 0.726687 | 2.2:+11436047 | None:intergenic |
TGATTAAACCCACTAAACTG+AGG | 0.729379 | 2.2:+11432270 | None:intergenic |
TGTGGTTGCAGGCACTCAAG+TGG | 0.730862 | 2.2:-11435597 | MS.gene059293:intron |
CCCTACCTTCAACAACAATG+CGG | 0.742954 | 2.2:-11430016 | MS.gene059293:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 11426471 | 11436153 | 11426471 | ID=MS.gene059293 |
chr2.2 | mRNA | 11426471 | 11436153 | 11426471 | ID=MS.gene059293.t1;Parent=MS.gene059293 |
chr2.2 | exon | 11436062 | 11436153 | 11436062 | ID=MS.gene059293.t1.exon1;Parent=MS.gene059293.t1 |
chr2.2 | CDS | 11436062 | 11436153 | 11436062 | ID=cds.MS.gene059293.t1;Parent=MS.gene059293.t1 |
chr2.2 | exon | 11435598 | 11435846 | 11435598 | ID=MS.gene059293.t1.exon2;Parent=MS.gene059293.t1 |
chr2.2 | CDS | 11435598 | 11435846 | 11435598 | ID=cds.MS.gene059293.t1;Parent=MS.gene059293.t1 |
chr2.2 | exon | 11434602 | 11434743 | 11434602 | ID=MS.gene059293.t1.exon3;Parent=MS.gene059293.t1 |
chr2.2 | CDS | 11434602 | 11434743 | 11434602 | ID=cds.MS.gene059293.t1;Parent=MS.gene059293.t1 |
chr2.2 | exon | 11434066 | 11434125 | 11434066 | ID=MS.gene059293.t1.exon4;Parent=MS.gene059293.t1 |
chr2.2 | CDS | 11434066 | 11434125 | 11434066 | ID=cds.MS.gene059293.t1;Parent=MS.gene059293.t1 |
chr2.2 | exon | 11433866 | 11433961 | 11433866 | ID=MS.gene059293.t1.exon5;Parent=MS.gene059293.t1 |
chr2.2 | CDS | 11433866 | 11433961 | 11433866 | ID=cds.MS.gene059293.t1;Parent=MS.gene059293.t1 |
chr2.2 | exon | 11432523 | 11432828 | 11432523 | ID=MS.gene059293.t1.exon6;Parent=MS.gene059293.t1 |
chr2.2 | CDS | 11432523 | 11432828 | 11432523 | ID=cds.MS.gene059293.t1;Parent=MS.gene059293.t1 |
chr2.2 | exon | 11432257 | 11432397 | 11432257 | ID=MS.gene059293.t1.exon7;Parent=MS.gene059293.t1 |
chr2.2 | CDS | 11432257 | 11432397 | 11432257 | ID=cds.MS.gene059293.t1;Parent=MS.gene059293.t1 |
chr2.2 | exon | 11431969 | 11432139 | 11431969 | ID=MS.gene059293.t1.exon8;Parent=MS.gene059293.t1 |
chr2.2 | CDS | 11431969 | 11432139 | 11431969 | ID=cds.MS.gene059293.t1;Parent=MS.gene059293.t1 |
chr2.2 | exon | 11429857 | 11430120 | 11429857 | ID=MS.gene059293.t1.exon9;Parent=MS.gene059293.t1 |
chr2.2 | CDS | 11429857 | 11430120 | 11429857 | ID=cds.MS.gene059293.t1;Parent=MS.gene059293.t1 |
chr2.2 | exon | 11429580 | 11429728 | 11429580 | ID=MS.gene059293.t1.exon10;Parent=MS.gene059293.t1 |
chr2.2 | CDS | 11429580 | 11429728 | 11429580 | ID=cds.MS.gene059293.t1;Parent=MS.gene059293.t1 |
chr2.2 | exon | 11427816 | 11428352 | 11427816 | ID=MS.gene059293.t1.exon11;Parent=MS.gene059293.t1 |
chr2.2 | CDS | 11427816 | 11428352 | 11427816 | ID=cds.MS.gene059293.t1;Parent=MS.gene059293.t1 |
chr2.2 | exon | 11426966 | 11427236 | 11426966 | ID=MS.gene059293.t1.exon12;Parent=MS.gene059293.t1 |
chr2.2 | CDS | 11426966 | 11427236 | 11426966 | ID=cds.MS.gene059293.t1;Parent=MS.gene059293.t1 |
chr2.2 | exon | 11426471 | 11426605 | 11426471 | ID=MS.gene059293.t1.exon13;Parent=MS.gene059293.t1 |
chr2.2 | CDS | 11426471 | 11426605 | 11426471 | ID=cds.MS.gene059293.t1;Parent=MS.gene059293.t1 |
Gene Sequence |
Protein sequence |