AlfalfaGEDB | MS.gene007073

M. sativa cultivar XinJiangDaYe / MS.gene007073

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914
PFAM: PF01535.23 PF12854.10 PF13041.9 PF14432.9 PF20431.1

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene007073.t1	XP_024626855.1	92.7	452	29	2	1	451	557	1005	2.20E-208	734.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene007073.t1	Q9FG16	63.6	368	133	1	95	461	255	622	2.5e-144	513.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene007073.t1	A0A2K3NVK4	86.1	461	64	0	1	461	1	461	7.9e-200	706.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene007073	MS.gene35515	PPI
MS.gene007073	MS.gene37134	PPI
MS.gene007073	MS.gene53201	PPI
MS.gene007073	MS.gene059293	PPI
MS.gene007073	MS.gene69718	PPI
MS.gene007073	MS.gene028009	PPI
MS.gene007073	MS.gene011753	PPI
MS.gene007073	MS.gene070590	PPI
MS.gene007073	MS.gene018203	PPI
MS.gene007073	MS.gene35722	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene007073.t1	MTR_7g106930	87.805	451	25	2	1	451	27	447	0.0	798
MS.gene007073.t1	MTR_3g052720	50.000	458	229	0	1	458	352	809	1.35e-160	484
MS.gene007073.t1	MTR_3g052720	30.976	297	168	8	2	265	221	513	1.49e-25	110
MS.gene007073.t1	MTR_1g012380	47.007	451	237	1	13	461	150	600	8.93e-151	442
MS.gene007073.t1	MTR_1g012380	21.778	225	171	4	50	271	85	307	5.01e-15	77.8
MS.gene007073.t1	MTR_1g059720	47.235	434	227	2	29	461	142	574	1.68e-146	430
MS.gene007073.t1	MTR_1g059720	34.615	156	100	2	21	174	234	389	2.07e-22	100
MS.gene007073.t1	MTR_1g059720	22.525	404	235	10	29	391	41	407	2.30e-20	94.4
MS.gene007073.t1	MTR_4g113830	47.126	435	228	2	29	461	304	738	5.08e-146	434
MS.gene007073.t1	MTR_4g113830	32.364	275	185	1	1	275	175	448	1.45e-45	169

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene007073.t1	AT5G06540	61.472	462	177	1	1	461	161	622	0.0	610
MS.gene007073.t1	AT5G06540	21.073	261	173	4	42	271	70	328	6.08e-19	90.1
MS.gene007073.t1	AT5G66520	48.156	461	238	1	2	461	160	620	1.96e-160	468
MS.gene007073.t1	AT5G66520	21.673	263	169	6	42	271	68	326	2.43e-15	79.0
MS.gene007073.t1	AT5G40405	47.072	461	244	0	1	461	152	612	8.29e-160	466
MS.gene007073.t1	AT5G40405	21.690	355	202	6	39	321	56	406	4.59e-17	84.3
MS.gene007073.t1	AT5G40405	47.072	461	244	0	1	461	152	612	8.29e-160	466
MS.gene007073.t1	AT5G40405	21.690	355	202	6	39	321	56	406	4.59e-17	84.3
MS.gene007073.t1	AT5G48910	47.727	440	230	0	22	461	207	646	2.49e-153	450
MS.gene007073.t1	AT5G48910	24.382	283	162	6	38	271	74	353	2.92e-23	103

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Find 93 sgRNAs with CRISPR-Local

Find 109 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCATGAGTTTACAAT+TGG	0.372203	7.3:-6908857	MS.gene007073:CDS
AAAAGGGTTAGAAAACAACT+TGG	0.609669	7.3:-6908905	MS.gene007073:CDS
AAAGCATGAAAAGAGATTAT+AGG	0.232745	7.3:-6909225	MS.gene007073:CDS
AAAGCCAAATGCTCCAGTAT+GGG	0.533124	7.3:-6909104	MS.gene007073:CDS
AAATGGTGTATGTTCTTGTA+TGG	0.363600	7.3:-6908513	MS.gene007073:CDS
AAATGTTGAAGTCGGAGAAA+GGG	0.563188	7.3:-6909050	MS.gene007073:CDS
AAGAGAAGGATGTAATTTGT+TGG	0.445646	7.3:-6909414	MS.gene007073:CDS
AAGATGAAACCAGAACATAG+TGG	0.668976	7.3:-6909010	MS.gene007073:CDS
AAGCCAAATGCTCCAGTATG+GGG	0.631162	7.3:-6909103	MS.gene007073:CDS
AAGGGCAGGAAAATTGGAAG+AGG	0.646062	7.3:-6909155	MS.gene007073:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGAAGATGCACTTTAC+AGG	-	chr7.3:6909655-6909674	MS.gene007073:CDS	30.0%
AAAAGGGTTAGAAAACAACT+TGG	-	chr7.3:6909462-6909481	MS.gene007073:CDS	30.0%
AAATGGTGTATGTTCTTGTA+TGG	-	chr7.3:6909854-6909873	MS.gene007073:CDS	30.0%
ACATAATAACCACTATGTTC+TGG	+	chr7.3:6909369-6909388	None:intergenic	30.0%
AGACAGAATAGAAAGAATGT+GGG	-	chr7.3:6909554-6909573	MS.gene007073:CDS	30.0%
ATTCACAGAAATGTTGAAGT+CGG	-	chr7.3:6909309-6909328	MS.gene007073:CDS	30.0%
ATTGGAACATTATGGATGTA+TGG	-	chr7.3:6909176-6909195	MS.gene007073:CDS	30.0%
CTATGATTAGTGGTTATTCA+CGG	-	chr7.3:6908677-6908696	MS.gene007073:CDS	30.0%
CTGCAAAAAATAAAGTTAGC+AGG	-	chr7.3:6909585-6909604	MS.gene007073:CDS	30.0%
CTTTCATTTCCTTGAAAATC+CGG	+	chr7.3:6908936-6908955	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	6908502	6909887	6908502	ID=MS.gene007073
chr7.3	mRNA	6908502	6909887	6908502	ID=MS.gene007073.t1;Parent=MS.gene007073
chr7.3	exon	6908502	6909887	6908502	ID=MS.gene007073.t1.exon1;Parent=MS.gene007073.t1
chr7.3	CDS	6908502	6909887	6908502	ID=cds.MS.gene007073.t1;Parent=MS.gene007073.t1

Gene Sequence

>MS.gene007073

ATGTATGGTTGTTTGTGTGATTTAATGGCTGCAAAATGCATTTTTAAGATGATGGGTCGATTTGATGTTGCTTCTTGGACTTGTATGATTAAGGGTTATTTTAAATGCGGTGATGTTGATTCTGCACGTAAACTGTTTGATAGAATGCCTGTGAAGAATTTGGTGACTTGGAGTACTATGATTAGTGGTTATTCACGGAATAATCGTTTTGATAGAGCGGTTGAAATATTTGAGATTCTTATAGATGAAGGGTTGGTGGCTAATGAGGTTGTTATGGTTGGTGTGGTATCTGCTTGTGCTCATTTAGGTGCTCTTGCGGCTGGGGAGAAAGCTTATGACCATGTGATTAGAAATAATTTGGATTTGAATGTGATTCTTGGAACGGCGATCGTTGATATGTATGCAAGATGTGGGAATGTTGAGAAAGCTGTCCGGATTTTCAAGGAAATGAAAGAGAAGGATGTAATTTGTTGGACAAGTTTGATTTCTGGAGTAGCTATGCATGGTTATGCAGAGGAAGCGCTTGAGTATTTTTATGTAATGGTGAAAAATGGGATAGTTCCTACAGATATTACTTTTACTGCGGTTTTGAAAGCTTGTAGTCATGGAGGGCTGGTAGAAAAGGGTCAAGAAATATTTGAAAGCATGAAAAGAGATTATAGGTTAGAGCCGAGATTGGAACATTATGGATGTATGGTTGATCTTCTTGGAAGGGCAGGAAAATTGGAAGAGGCGGAGAATTTTATTCATGAAATGCCTGTAAAGCCAAATGCTCCAGTATGGGGAGCATTGCTAGGAGCTTGCAGGATTCACAGAAATGTTGAAGTCGGAGAAAGGGTTGGAAAGATTTTGATCAAGATGAAACCAGAACATAGTGGTTATTATGTGTTGCTGTCGAACATATATGCGCGCACAAACAAATGGAAAGATGCTACTGTCATTAGAAGATTAATGAAGGAAAAAAGGGTTAGAAAACAACTTGGATATAGTCTCATTGAGATAGATGGAAAAACTCATGAGTTTACAATTGGAGCTAAAACACATCCAGAAATAGACAGAATAGAAAGAATGTGGGAAAAGATACTGCAAAAAATAAAGTTAGCAGGGTACATGGGAGATACTAGTGAGGCTTTGTTTGACATAGATGAGGAGGAAAAAGAAGATGCACTTTACAGGCATAGTGAGAAACTGGCCATTGCCTATGGAATTATGAAGATTCAAGCTCCTGGGCCTATTCGGATTGTGAAAAACTTGCGTGTCTGTGAAGATTGTCACACAGCTACCAAGTTTATCTCAAAGGTTTTCGATGTAGAGTTAATTGTGAGAGATAGAAACAGATTTCATCATTTTAAAAATGGTGTATGTTCTTGTATGGATTACTGGTAG

Protein sequence

>MS.gene007073.t1

MYGCLCDLMAAKCIFKMMGRFDVASWTCMIKGYFKCGDVDSARKLFDRMPVKNLVTWSTMISGYSRNNRFDRAVEIFEILIDEGLVANEVVMVGVVSACAHLGALAAGEKAYDHVIRNNLDLNVILGTAIVDMYARCGNVEKAVRIFKEMKEKDVICWTSLISGVAMHGYAEEALEYFYVMVKNGIVPTDITFTAVLKACSHGGLVEKGQEIFESMKRDYRLEPRLEHYGCMVDLLGRAGKLEEAENFIHEMPVKPNAPVWGALLGACRIHRNVEVGERVGKILIKMKPEHSGYYVLLSNIYARTNKWKDATVIRRLMKEKRVRKQLGYSLIEIDGKTHEFTIGAKTHPEIDRIERMWEKILQKIKLAGYMGDTSEALFDIDEEEKEDALYRHSEKLAIAYGIMKIQAPGPIRIVKNLRVCEDCHTATKFISKVFDVELIVRDRNRFHHFKNGVCSCMDYW