Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059359.t1 | XP_013455640.1 | 100 | 117 | 0 | 0 | 1 | 117 | 1 | 117 | 4.50E-65 | 256.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059359.t1 | Q940X7 | 92.4 | 118 | 8 | 1 | 1 | 117 | 1 | 118 | 2.0e-61 | 236.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059359.t1 | I3T5Z4 | 100.0 | 117 | 0 | 0 | 1 | 117 | 1 | 117 | 3.2e-65 | 256.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene059359 | MS.gene93612 | PPI |
| MS.gene43131 | MS.gene059359 | PPI |
| MS.gene006802 | MS.gene059359 | PPI |
| MS.gene059359 | MS.gene96778 | PPI |
| MS.gene031482 | MS.gene059359 | PPI |
| MS.gene56142 | MS.gene059359 | PPI |
| MS.gene56523 | MS.gene059359 | PPI |
| MS.gene059359 | MS.gene93598 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059359.t1 | MTR_4g046877 | 100.000 | 117 | 0 | 0 | 1 | 117 | 1 | 117 | 7.19e-86 | 245 |
| MS.gene059359.t1 | MTR_2g088570 | 93.220 | 118 | 7 | 1 | 1 | 117 | 1 | 118 | 1.39e-78 | 227 |
| MS.gene059359.t1 | MTR_4g007410 | 38.272 | 81 | 42 | 2 | 36 | 113 | 12 | 87 | 3.52e-15 | 65.9 |
| MS.gene059359.t1 | MTR_7g005900 | 35.135 | 74 | 40 | 2 | 43 | 113 | 8 | 76 | 2.33e-11 | 55.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059359.t1 | AT5G20570 | 91.525 | 118 | 9 | 1 | 1 | 117 | 1 | 118 | 1.62e-73 | 214 |
| MS.gene059359.t1 | AT5G20570 | 78.676 | 136 | 10 | 2 | 1 | 117 | 1 | 136 | 1.98e-68 | 202 |
| MS.gene059359.t1 | AT5G20570 | 76.056 | 142 | 9 | 2 | 1 | 117 | 1 | 142 | 5.66e-68 | 201 |
| MS.gene059359.t1 | AT3G42830 | 82.203 | 118 | 17 | 2 | 1 | 117 | 1 | 115 | 5.78e-62 | 185 |
| MS.gene059359.t1 | AT3G05870 | 37.363 | 91 | 49 | 2 | 27 | 114 | 2 | 87 | 2.87e-16 | 68.6 |
| MS.gene059359.t1 | AT3G05870 | 37.363 | 91 | 49 | 2 | 27 | 114 | 2 | 87 | 2.87e-16 | 68.6 |
| MS.gene059359.t1 | AT3G05870 | 37.363 | 91 | 49 | 2 | 27 | 114 | 2 | 87 | 2.87e-16 | 68.6 |
| MS.gene059359.t1 | AT3G05870 | 37.349 | 83 | 44 | 2 | 35 | 114 | 1 | 78 | 1.47e-15 | 66.6 |
| MS.gene059359.t1 | AT3G05870 | 37.349 | 83 | 44 | 2 | 35 | 114 | 13 | 90 | 1.94e-15 | 66.6 |
| MS.gene059359.t1 | AT3G05870 | 37.349 | 83 | 44 | 2 | 35 | 114 | 13 | 90 | 1.94e-15 | 66.6 |
| MS.gene059359.t1 | AT3G05870 | 37.349 | 83 | 44 | 2 | 35 | 114 | 13 | 90 | 1.94e-15 | 66.6 |
Find 38 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCTGTTGCTCTCTGGGCTT+GGG | 0.153878 | 4.4:+31746471 | MS.gene059359:CDS |
| CTCGAAACGTTTGGGTTTCT+TGG | 0.194770 | 4.4:-31746434 | None:intergenic |
| ACGCTGTTGCTCTCTGGGCT+TGG | 0.272937 | 4.4:+31746470 | MS.gene059359:CDS |
| CTTCTTGATCTCGAAACGTT+TGG | 0.294811 | 4.4:-31746443 | None:intergenic |
| TTCTTGATCTCGAAACGTTT+GGG | 0.343122 | 4.4:-31746442 | None:intergenic |
| ACTTCCATTGCATTAGTAGA+TGG | 0.347117 | 4.4:+31749851 | MS.gene059359:CDS |
| CGAGGAATGCACTGTTGCTT+GGG | 0.359954 | 4.4:+31746782 | MS.gene059359:CDS |
| TATTGAGTGCCAAGCTAATC+AGG | 0.361895 | 4.4:+31746746 | MS.gene059359:CDS |
| AGTGGAACGCTGTTGCTCTC+TGG | 0.369514 | 4.4:+31746464 | MS.gene059359:CDS |
| GTGGAACGCTGTTGCTCTCT+GGG | 0.417225 | 4.4:+31746465 | MS.gene059359:CDS |
| CGTTTGGGTTTCTTGGAAGA+AGG | 0.431722 | 4.4:-31746427 | None:intergenic |
| GCGAGGAATGCACTGTTGCT+TGG | 0.445853 | 4.4:+31746781 | MS.gene059359:CDS |
| CTGCTTGAAGGTTCGCCGGC+GGG | 0.446861 | 4.4:-31746394 | None:intergenic |
| GGACCGGCGGCGCTGCTTGA+AGG | 0.448844 | 4.4:-31746406 | None:intergenic |
| GCTTACAGAGATCCATGATA+TGG | 0.449308 | 4.4:-31746635 | None:intergenic |
| GGCGCTGCTTGAAGGTTCGC+CGG | 0.468158 | 4.4:-31746398 | None:intergenic |
| GGGTTTCTTGGAAGAAGGAC+CGG | 0.498668 | 4.4:-31746422 | None:intergenic |
| GAACCTTCAAGCAGCGCCGC+CGG | 0.503851 | 4.4:+31746403 | MS.gene059359:CDS |
| ACTCGTCAAGTGTGTCCTCT+TGG | 0.508929 | 4.4:+31749880 | MS.gene059359:CDS |
| AGAGATCCATGATATGGTTA+CGG | 0.513238 | 4.4:-31746629 | None:intergenic |
| GCATTCCTCGCTAGTAGCAC+TGG | 0.516805 | 4.4:-31746769 | None:intergenic |
| GAGTGGGAGTTTCAGAAATA+CGG | 0.526266 | 4.4:+31749997 | MS.gene059359:CDS |
| GCTGTTGCTCTCTGGGCTTG+GGG | 0.534795 | 4.4:+31746472 | MS.gene059359:CDS |
| TAGCACTGGCCTGATTAGCT+TGG | 0.542063 | 4.4:-31746755 | None:intergenic |
| AGGTTCGCCGGCGGGAACCA+TGG | 0.551551 | 4.4:-31746386 | None:intergenic |
| GCTGCTTGAAGGTTCGCCGG+CGG | 0.559287 | 4.4:-31746395 | None:intergenic |
| TATTTGCCGTAACCATATCA+TGG | 0.584059 | 4.4:+31746623 | MS.gene059359:CDS |
| ACTCGATTCCGACGTAACCA+TGG | 0.594615 | 4.4:+31746369 | MS.gene059359:CDS |
| TGAGCCATCTACTAATGCAA+TGG | 0.598687 | 4.4:-31749855 | None:intergenic |
| TGCAATGGAAGTGAAAAGCA+TGG | 0.613228 | 4.4:-31749840 | None:intergenic |
| AACGTTTCGAGATCAAGAAG+TGG | 0.620010 | 4.4:+31746446 | MS.gene059359:CDS |
| GACGTAACCATGGTTCCCGC+CGG | 0.624258 | 4.4:+31746379 | MS.gene059359:CDS |
| TCAGGCCAGTGCTACTAGCG+AGG | 0.640460 | 4.4:+31746764 | MS.gene059359:CDS |
| GAGGAATGCACTGTTGCTTG+GGG | 0.644497 | 4.4:+31746783 | MS.gene059359:CDS |
| TTTCTTGGAAGAAGGACCGG+CGG | 0.670628 | 4.4:-31746419 | None:intergenic |
| TGGTACAGACAACAGTGAGT+GGG | 0.670684 | 4.4:+31749981 | MS.gene059359:intron |
| GGCGGGAACCATGGTTACGT+CGG | 0.675777 | 4.4:-31746377 | None:intergenic |
| ATGGTACAGACAACAGTGAG+TGG | 0.676744 | 4.4:+31749980 | MS.gene059359:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAGATATAATTTATAAATA+AGG | - | chr4.4:31747945-31747964 | None:intergenic | 10.0% |
| !!! | TATTTTTTTTTATCGTTAAT+CGG | + | chr4.4:31746829-31746848 | MS.gene059359:intron | 10.0% |
| !! | AAAAATAAAAAAAGAGGATT+TGG | - | chr4.4:31746816-31746835 | None:intergenic | 15.0% |
| !! | AAAATAAAAAAAGAGGATTT+GGG | - | chr4.4:31746815-31746834 | None:intergenic | 15.0% |
| !! | AATAAAAATAGATTACATGA+TGG | - | chr4.4:31749565-31749584 | None:intergenic | 15.0% |
| !! | AATTAAGAGTCATATAAAAA+TGG | - | chr4.4:31747625-31747644 | None:intergenic | 15.0% |
| !! | ACATAACTAAATATTGTAAA+AGG | - | chr4.4:31746873-31746892 | None:intergenic | 15.0% |
| !! | ATATATAGTTAAATTCTTGT+GGG | + | chr4.4:31748926-31748945 | MS.gene059359:intron | 15.0% |
| !! | GAATTTAACTATATATGTAA+TGG | - | chr4.4:31748922-31748941 | None:intergenic | 15.0% |
| !! | TAAATTATATCTTGAATTCA+TGG | + | chr4.4:31747951-31747970 | MS.gene059359:intron | 15.0% |
| !!! | AGCAAAAAATTCATTTTTTT+AGG | - | chr4.4:31747753-31747772 | None:intergenic | 15.0% |
| !!! | ATGAATTTTTTAACATTCAA+GGG | - | chr4.4:31747669-31747688 | None:intergenic | 15.0% |
| !! | AAACAATAATCGTGAAAATT+AGG | - | chr4.4:31746536-31746555 | None:intergenic | 20.0% |
| !! | AACAATAATCGTGAAAATTA+GGG | - | chr4.4:31746535-31746554 | None:intergenic | 20.0% |
| !! | AATTGGAAATAAATTCTTGT+GGG | + | chr4.4:31748893-31748912 | MS.gene059359:intron | 20.0% |
| !! | AGCACTAAATATAAAAAGTA+GGG | - | chr4.4:31748526-31748545 | None:intergenic | 20.0% |
| !! | ATATATGAAAAGTAGATAGT+GGG | + | chr4.4:31749517-31749536 | MS.gene059359:intron | 20.0% |
| !! | CATATATAGTTAAATTCTTG+TGG | + | chr4.4:31748925-31748944 | MS.gene059359:intron | 20.0% |
| !! | CTTTGTAATTTATTGCATTT+GGG | - | chr4.4:31747266-31747285 | None:intergenic | 20.0% |
| !! | TAAATGTAAGTTATTGAGTT+AGG | + | chr4.4:31748158-31748177 | MS.gene059359:intron | 20.0% |
| !! | TAGCACTAAATATAAAAAGT+AGG | - | chr4.4:31748527-31748546 | None:intergenic | 20.0% |
| !! | TATATAGTTAAATTCTTGTG+GGG | + | chr4.4:31748927-31748946 | MS.gene059359:intron | 20.0% |
| !! | TATATATGAAAAGTAGATAG+TGG | + | chr4.4:31749516-31749535 | MS.gene059359:intron | 20.0% |
| !! | TTAGACCTAAATACATATTT+CGG | - | chr4.4:31748219-31748238 | None:intergenic | 20.0% |
| !!! | ATAACTTTTAAGATCTTCAT+TGG | - | chr4.4:31749073-31749092 | None:intergenic | 20.0% |
| !!! | ATATACCAATTTCAAGTAAA+AGG | + | chr4.4:31748696-31748715 | MS.gene059359:intron | 20.0% |
| !!! | ATGAATTTTTTAACACTCAA+GGG | - | chr4.4:31748381-31748400 | None:intergenic | 20.0% |
| !!! | ATGTTAATCTGCTTTTATTA+GGG | + | chr4.4:31746889-31746908 | MS.gene059359:intron | 20.0% |
| !!! | GATGAATTTTTTAACATTCA+AGG | - | chr4.4:31747670-31747689 | None:intergenic | 20.0% |
| !!! | TATGTTAATCTGCTTTTATT+AGG | + | chr4.4:31746888-31746907 | MS.gene059359:intron | 20.0% |
| !!! | TCAGTTGAATTAGTTTTTTA+TGG | + | chr4.4:31748182-31748201 | MS.gene059359:intron | 20.0% |
| !!! | TTTAGTGCTATTTTCTAATT+TGG | + | chr4.4:31748537-31748556 | MS.gene059359:intron | 20.0% |
| ! | AAAAATAGATTACATGATGG+TGG | - | chr4.4:31749562-31749581 | None:intergenic | 25.0% |
| ! | AAAATAGATTACATGATGGT+GGG | - | chr4.4:31749561-31749580 | None:intergenic | 25.0% |
| ! | AACAAAAGCAGGAAAAATTT+GGG | - | chr4.4:31748041-31748060 | None:intergenic | 25.0% |
| ! | AAGCAGTTTCATATATCAAT+TGG | + | chr4.4:31748876-31748895 | MS.gene059359:intron | 25.0% |
| ! | AATCTATTGCATTATAGCAA+AGG | - | chr4.4:31747995-31748014 | None:intergenic | 25.0% |
| ! | ACTAGATACTTAGAACTATT+TGG | - | chr4.4:31747692-31747711 | None:intergenic | 25.0% |
| ! | ACTAGTTGATCTTAATCTTA+TGG | + | chr4.4:31748609-31748628 | MS.gene059359:intron | 25.0% |
| ! | ATGCAATAGATTAAAGGAAA+AGG | + | chr4.4:31748003-31748022 | MS.gene059359:intron | 25.0% |
| ! | ATTGGAAATAAATTCTTGTG+GGG | + | chr4.4:31748894-31748913 | MS.gene059359:intron | 25.0% |
| ! | CAATTATTCGATATTCGTTT+CGG | + | chr4.4:31746694-31746713 | MS.gene059359:intron | 25.0% |
| ! | CAATTGGAAATAAATTCTTG+TGG | + | chr4.4:31748892-31748911 | MS.gene059359:intron | 25.0% |
| ! | GATATGTTACAATATTTCCT+CGG | - | chr4.4:31748835-31748854 | None:intergenic | 25.0% |
| ! | GCTATAATGCAATAGATTAA+AGG | + | chr4.4:31747997-31748016 | MS.gene059359:intron | 25.0% |
| ! | GCTTTGTAATTTATTGCATT+TGG | - | chr4.4:31747267-31747286 | None:intergenic | 25.0% |
| ! | TATATGAAAAGTAGATAGTG+GGG | + | chr4.4:31749518-31749537 | MS.gene059359:intron | 25.0% |
| ! | TGTATTTAGGTCTAAACATA+TGG | + | chr4.4:31748224-31748243 | MS.gene059359:intron | 25.0% |
| ! | TTGAGTTCAATAAGCATATT+CGG | - | chr4.4:31749736-31749755 | None:intergenic | 25.0% |
| !! | AATTTCAAGTAAAACTAAGC+CGG | + | chr4.4:31748790-31748809 | MS.gene059359:intron | 25.0% |
| !! | TTAGAGCACTATATATGTAA+TGG | - | chr4.4:31748955-31748974 | None:intergenic | 25.0% |
| !!! | AACATAGATTGCTTTGATTT+TGG | + | chr4.4:31747138-31747157 | MS.gene059359:intron | 25.0% |
| !!! | ATTTTTAACTGCTTTGATCT+TGG | + | chr4.4:31747887-31747906 | MS.gene059359:intron | 25.0% |
| !!! | CGAATATAAGATTTTGAGTT+AGG | + | chr4.4:31747417-31747436 | MS.gene059359:intron | 25.0% |
| !!! | GATGAATTTTTTAACACTCA+AGG | - | chr4.4:31748382-31748401 | None:intergenic | 25.0% |
| !!! | TACTGTAATTTTTTCTGTGA+TGG | + | chr4.4:31749961-31749980 | MS.gene059359:intron | 25.0% |
| !!! | TTGATTTGGATTTTGGTTTT+AGG | + | chr4.4:31746723-31746742 | MS.gene059359:intron | 25.0% |
| AAACATATGGATAAGTTTCC+AGG | + | chr4.4:31748237-31748256 | MS.gene059359:intron | 30.0% | |
| AAATGTCAACTGTGAATGAT+GGG | - | chr4.4:31749384-31749403 | None:intergenic | 30.0% | |
| AACCTACTAACAATCTTACA+TGG | - | chr4.4:31748078-31748097 | None:intergenic | 30.0% | |
| AACTTGTACTGTCTCATTAA+GGG | - | chr4.4:31749342-31749361 | None:intergenic | 30.0% | |
| ACAAGTTTGAAGATTCCATT+TGG | - | chr4.4:31749621-31749640 | None:intergenic | 30.0% | |
| ACTGCTTAAAGTTTAACTCA+TGG | - | chr4.4:31748863-31748882 | None:intergenic | 30.0% | |
| ACTTATAATCACTCCCTTTA+TGG | - | chr4.4:31749133-31749152 | None:intergenic | 30.0% | |
| ATGTAAGATTGTTAGTAGGT+TGG | + | chr4.4:31748077-31748096 | MS.gene059359:intron | 30.0% | |
| ATGTTAATGTGTCATCTCTT+AGG | + | chr4.4:31747801-31747820 | MS.gene059359:intron | 30.0% | |
| CAAAATACATAGAGCTAGTT+AGG | - | chr4.4:31748404-31748423 | None:intergenic | 30.0% | |
| CTGTGTGTATATCTTATACA+GGG | + | chr4.4:31749809-31749828 | MS.gene059359:intron | 30.0% | |
| CTTATAATCACTCCCTTTAT+GGG | - | chr4.4:31749132-31749151 | None:intergenic | 30.0% | |
| GAAAATTAGGGTTTACGATT+GGG | - | chr4.4:31746523-31746542 | None:intergenic | 30.0% | |
| GAACAAAAGCAGGAAAAATT+TGG | - | chr4.4:31748042-31748061 | None:intergenic | 30.0% | |
| GCTTATTGAACTCAATATGA+AGG | + | chr4.4:31749741-31749760 | MS.gene059359:intron | 30.0% | |
| TAAAAAAACTACCTAGACAG+CGG | - | chr4.4:31747178-31747197 | None:intergenic | 30.0% | |
| TGAAAATTAGGGTTTACGAT+TGG | - | chr4.4:31746524-31746543 | None:intergenic | 30.0% | |
| TGCAATAAATTACAAAGCCA+AGG | + | chr4.4:31747269-31747288 | MS.gene059359:intron | 30.0% | |
| TGTGATAGAGAAGTTAGAAA+AGG | + | chr4.4:31747547-31747566 | MS.gene059359:intron | 30.0% | |
| TGTGTGTATATCTTATACAG+GGG | + | chr4.4:31749810-31749829 | MS.gene059359:intron | 30.0% | |
| TGTTAATGTGTCATCTCTTA+GGG | + | chr4.4:31747802-31747821 | MS.gene059359:intron | 30.0% | |
| TTATAATCACTCCCTTTATG+GGG | - | chr4.4:31749131-31749150 | None:intergenic | 30.0% | |
| TTATGCCGGTAAAAAACATA+GGG | - | chr4.4:31747047-31747066 | None:intergenic | 30.0% | |
| TTCCACCGAAATATGTATTT+AGG | + | chr4.4:31748211-31748230 | MS.gene059359:intron | 30.0% | |
| TTTATGCCGGTAAAAAACAT+AGG | - | chr4.4:31747048-31747067 | None:intergenic | 30.0% | |
| ! | ATTGGTCTGTGTAAAATTGT+TGG | + | chr4.4:31747336-31747355 | MS.gene059359:intron | 30.0% |
| ! | TAGTAAAGAAGCTTCTGAAA+AGG | + | chr4.4:31748275-31748294 | MS.gene059359:intron | 30.0% |
| ! | TTATTTAGTTTCTGCTTACG+CGG | + | chr4.4:31749765-31749784 | MS.gene059359:intron | 30.0% |
| !! | ATAGGGTATTGTGTGTAATT+TGG | - | chr4.4:31747030-31747049 | None:intergenic | 30.0% |
| !! | TTTGCTTTTAAGTGACTAGA+GGG | + | chr4.4:31747767-31747786 | MS.gene059359:intron | 30.0% |
| !! | TTTTGCTTTTAAGTGACTAG+AGG | + | chr4.4:31747766-31747785 | MS.gene059359:intron | 30.0% |
| !!! | ATTTTGAGTTAGGCTTAGTT+TGG | + | chr4.4:31747427-31747446 | MS.gene059359:intron | 30.0% |
| !!! | CAATACCCTATGTTTTTTAC+CGG | + | chr4.4:31747039-31747058 | MS.gene059359:intron | 30.0% |
| !!! | GGCTTAGTTTTACTTGAAAT+TGG | - | chr4.4:31748791-31748810 | None:intergenic | 30.0% |
| !!! | GTTTGGATTGATTTGGATTT+TGG | + | chr4.4:31746716-31746735 | MS.gene059359:intron | 30.0% |
| AAAAGCAGGAAAAATTTGGG+TGG | - | chr4.4:31748038-31748057 | None:intergenic | 35.0% | |
| AAAGAAATGGAGGACAACAT+TGG | + | chr4.4:31749488-31749507 | MS.gene059359:intron | 35.0% | |
| AAGAAGTTATGCATACCAAG+AGG | - | chr4.4:31749898-31749917 | None:intergenic | 35.0% | |
| AAGGGAGTGATTATAAGTTG+TGG | + | chr4.4:31749135-31749154 | MS.gene059359:intron | 35.0% | |
| AATACTACACAAACAGTACC+AGG | - | chr4.4:31747319-31747338 | None:intergenic | 35.0% | |
| ACAAAAGCTTCCTGAAAAGT+TGG | - | chr4.4:31747089-31747108 | None:intergenic | 35.0% | |
| ACTTCCATTGCATTAGTAGA+TGG | + | chr4.4:31749851-31749870 | MS.gene059359:CDS | 35.0% | |
| ACTTGTACTGTCTCATTAAG+GGG | - | chr4.4:31749341-31749360 | None:intergenic | 35.0% | |
| AGAGATCCATGATATGGTTA+CGG | - | chr4.4:31746632-31746651 | None:intergenic | 35.0% | |
| AGGGAGTGATTATAAGTTGT+GGG | + | chr4.4:31749136-31749155 | MS.gene059359:intron | 35.0% | |
| AGTGTCTTTCATCATGTTAG+AGG | - | chr4.4:31748442-31748461 | None:intergenic | 35.0% | |
| ATACTACACAAACAGTACCA+GGG | - | chr4.4:31747318-31747337 | None:intergenic | 35.0% | |
| ATATGGATAAGTTTCCAGGT+AGG | + | chr4.4:31748241-31748260 | MS.gene059359:intron | 35.0% | |
| ATCATAGCATGAACAAAAGC+AGG | - | chr4.4:31748052-31748071 | None:intergenic | 35.0% | |
| ATCCCTTCCTCAATATGAAA+CGG | - | chr4.4:31749193-31749212 | None:intergenic | 35.0% | |
| ATTATAAGTTGTGGGTTTCG+AGG | + | chr4.4:31749144-31749163 | MS.gene059359:intron | 35.0% | |
| ATTCACAGTTGACATTTGGT+GGG | + | chr4.4:31749387-31749406 | MS.gene059359:intron | 35.0% | |
| ATTCGATATTCGTTTCGGTT+TGG | + | chr4.4:31746699-31746718 | MS.gene059359:intron | 35.0% | |
| ATTGGTATATTCTGCACGAT+TGG | - | chr4.4:31748686-31748705 | None:intergenic | 35.0% | |
| CAAATGTCAACTGTGAATGA+TGG | - | chr4.4:31749385-31749404 | None:intergenic | 35.0% | |
| CAACTTGTACTGTCTCATTA+AGG | - | chr4.4:31749343-31749362 | None:intergenic | 35.0% | |
| CAATTAACTAGGGTTTATGC+CGG | - | chr4.4:31747061-31747080 | None:intergenic | 35.0% | |
| CATCATTCACAGTTGACATT+TGG | + | chr4.4:31749383-31749402 | MS.gene059359:intron | 35.0% | |
| GACCTAAATACATATTTCGG+TGG | - | chr4.4:31748216-31748235 | None:intergenic | 35.0% | |
| GCTGTGTGTATATCTTATAC+AGG | + | chr4.4:31749808-31749827 | MS.gene059359:intron | 35.0% | |
| GCTTAAAGTTTAACTCATGG+TGG | - | chr4.4:31748860-31748879 | None:intergenic | 35.0% | |
| GGAAGCTTCTTAAAAGTTTG+TGG | + | chr4.4:31747568-31747587 | MS.gene059359:intron | 35.0% | |
| GTCTGTGTAAAATTGTTGGT+GGG | + | chr4.4:31747340-31747359 | MS.gene059359:intron | 35.0% | |
| GTTCAGTTCCTTAAACTGAA+GGG | + | chr4.4:31748498-31748517 | MS.gene059359:intron | 35.0% | |
| TATGATCTTGTGTGAGACAA+AGG | + | chr4.4:31748117-31748136 | MS.gene059359:intron | 35.0% | |
| TATGGATAAGTTTCCAGGTA+GGG | + | chr4.4:31748242-31748261 | MS.gene059359:intron | 35.0% | |
| TATTTGCCGTAACCATATCA+TGG | + | chr4.4:31746623-31746642 | MS.gene059359:CDS | 35.0% | |
| TCCTCCATTTCTTTGTGAAA+GGG | - | chr4.4:31749482-31749501 | None:intergenic | 35.0% | |
| TGCCATGTAAGATTGTTAGT+AGG | + | chr4.4:31748073-31748092 | MS.gene059359:intron | 35.0% | |
| TGGTACTGTTTGTGTAGTAT+TGG | + | chr4.4:31747318-31747337 | MS.gene059359:intron | 35.0% | |
| TGTGTAGTTCAAACATTCCT+TGG | - | chr4.4:31747289-31747308 | None:intergenic | 35.0% | |
| TGTTCAGTTCCTTAAACTGA+AGG | + | chr4.4:31748497-31748516 | MS.gene059359:intron | 35.0% | |
| TTCTTGATCTCGAAACGTTT+GGG | - | chr4.4:31746445-31746464 | None:intergenic | 35.0% | |
| TTGAAGCTAGGTCAAATTCT+AGG | + | chr4.4:31746912-31746931 | MS.gene059359:intron | 35.0% | |
| TTTACAATCCTCCCCATAAA+GGG | + | chr4.4:31749117-31749136 | MS.gene059359:intron | 35.0% | |
| ! | AATGATGGGAAATGTCCAAA+GGG | - | chr4.4:31749370-31749389 | None:intergenic | 35.0% |
| ! | AGAAGCTTCTGAAAAGGTTT+AGG | + | chr4.4:31748281-31748300 | MS.gene059359:intron | 35.0% |
| ! | CACTGCCTTTTACTTGAAAT+TGG | - | chr4.4:31748704-31748723 | None:intergenic | 35.0% |
| ! | CTTTTATTAGGGTTGAAGCT+AGG | + | chr4.4:31746900-31746919 | MS.gene059359:intron | 35.0% |
| ! | GTACTGTGCTATTACAGTTT+AGG | + | chr4.4:31749671-31749690 | MS.gene059359:intron | 35.0% |
| ! | TAAGATTGTTAGTAGGTTGG+TGG | + | chr4.4:31748080-31748099 | MS.gene059359:intron | 35.0% |
| ! | TAGGTCAAATTCTAGGAATG+AGG | + | chr4.4:31746919-31746938 | MS.gene059359:intron | 35.0% |
| ! | TATTTAGTTTCTGCTTACGC+GGG | + | chr4.4:31749766-31749785 | MS.gene059359:intron | 35.0% |
| !! | CTAGGTCAAATTCTAGGATA+AGG | + | chr4.4:31747831-31747850 | MS.gene059359:intron | 35.0% |
| AAAACAAGGGAGCTGAAAGA+AGG | + | chr4.4:31749418-31749437 | MS.gene059359:intron | 40.0% | |
| AACGAAAACAACCTACCCTA+TGG | - | chr4.4:31749039-31749058 | None:intergenic | 40.0% | |
| AACGTTTCGAGATCAAGAAG+TGG | + | chr4.4:31746446-31746465 | MS.gene059359:CDS | 40.0% | |
| ACGAAAACAACCTACCCTAT+GGG | - | chr4.4:31749038-31749057 | None:intergenic | 40.0% | |
| AGGAACTGAACAGACAAAGA+AGG | - | chr4.4:31748489-31748508 | None:intergenic | 40.0% | |
| AGTTGGTCGACCAATTAACT+AGG | - | chr4.4:31747072-31747091 | None:intergenic | 40.0% | |
| AGTTTATGTCTCTACGACGA+TGG | + | chr4.4:31746979-31746998 | MS.gene059359:intron | 40.0% | |
| ATAAGTTTCCAGGTAGGGAT+AGG | + | chr4.4:31748247-31748266 | MS.gene059359:intron | 40.0% | |
| ATCTGCGTGATTCAAACTTG+TGG | + | chr4.4:31747382-31747401 | MS.gene059359:intron | 40.0% | |
| CAAGGAAATATCCACTGTCT+AGG | + | chr4.4:31747913-31747932 | MS.gene059359:intron | 40.0% | |
| CATTAAGGGGTTACCTATCA+AGG | - | chr4.4:31749328-31749347 | None:intergenic | 40.0% | |
| CATTCACAGTTGACATTTGG+TGG | + | chr4.4:31749386-31749405 | MS.gene059359:intron | 40.0% | |
| CATTCTACAAGGGAAAGGAA+AGG | - | chr4.4:31749241-31749260 | None:intergenic | 40.0% | |
| CATTTCTTTGTGAAAGGGAG+AGG | - | chr4.4:31749477-31749496 | None:intergenic | 40.0% | |
| CCATGTGCTTTGACTAGTAA+AGG | - | chr4.4:31749929-31749948 | None:intergenic | 40.0% | |
| CCTTTACTAGTCAAAGCACA+TGG | + | chr4.4:31749926-31749945 | MS.gene059359:intron | 40.0% | |
| CGGCATAAACCCTAGTTAAT+TGG | + | chr4.4:31747059-31747078 | MS.gene059359:intron | 40.0% | |
| CTAGTTCATAGGTCCTTGAT+AGG | + | chr4.4:31749312-31749331 | MS.gene059359:intron | 40.0% | |
| CTATCAAGGACCTATGAACT+AGG | - | chr4.4:31749314-31749333 | None:intergenic | 40.0% | |
| CTCTCCCTTTCACAAAGAAA+TGG | + | chr4.4:31749475-31749494 | MS.gene059359:intron | 40.0% | |
| CTTCTTGATCTCGAAACGTT+TGG | - | chr4.4:31746446-31746465 | None:intergenic | 40.0% | |
| CTTTACAATCCTCCCCATAA+AGG | + | chr4.4:31749116-31749135 | MS.gene059359:intron | 40.0% | |
| CTTTATGGGGAGGATTGTAA+AGG | - | chr4.4:31749118-31749137 | None:intergenic | 40.0% | |
| CTTTCCTTTCCCTTGTAGAA+TGG | + | chr4.4:31749239-31749258 | MS.gene059359:intron | 40.0% | |
| GAACTAGGAGCAGTACAAAT+GGG | - | chr4.4:31749299-31749318 | None:intergenic | 40.0% | |
| GAGTGGGAGTTTCAGAAATA+CGG | + | chr4.4:31749997-31750016 | MS.gene059359:CDS | 40.0% | |
| GCTTACAGAGATCCATGATA+TGG | - | chr4.4:31746638-31746657 | None:intergenic | 40.0% | |
| GGTCTGTGTAAAATTGTTGG+TGG | + | chr4.4:31747339-31747358 | MS.gene059359:intron | 40.0% | |
| GTCCTCCATTTCTTTGTGAA+AGG | - | chr4.4:31749483-31749502 | None:intergenic | 40.0% | |
| GTTGGTCGACCAATTAACTA+GGG | - | chr4.4:31747071-31747090 | None:intergenic | 40.0% | |
| TAAGGATACTACCTAGACAG+TGG | - | chr4.4:31747927-31747946 | None:intergenic | 40.0% | |
| TAAGTTTCCAGGTAGGGATA+GGG | + | chr4.4:31748248-31748267 | MS.gene059359:intron | 40.0% | |
| TACAAGGGAAAGGAAAGGAA+AGG | - | chr4.4:31749236-31749255 | None:intergenic | 40.0% | |
| TATTGAGTGCCAAGCTAATC+AGG | + | chr4.4:31746746-31746765 | MS.gene059359:CDS | 40.0% | |
| TCCCGTTTCATATTGAGGAA+GGG | + | chr4.4:31749188-31749207 | MS.gene059359:intron | 40.0% | |
| TCCCTTCCTCAATATGAAAC+GGG | - | chr4.4:31749192-31749211 | None:intergenic | 40.0% | |
| TCCCTTTCACAAAGAAATGG+AGG | + | chr4.4:31749478-31749497 | MS.gene059359:intron | 40.0% | |
| TGAACTACACAAATTCTCCC+TGG | + | chr4.4:31747298-31747317 | MS.gene059359:intron | 40.0% | |
| TGAACTAGGAGCAGTACAAA+TGG | - | chr4.4:31749300-31749319 | None:intergenic | 40.0% | |
| TGAGCCATCTACTAATGCAA+TGG | - | chr4.4:31749858-31749877 | None:intergenic | 40.0% | |
| TGCAATGGAAGTGAAAAGCA+TGG | - | chr4.4:31749843-31749862 | None:intergenic | 40.0% | |
| TGTAAAGGAAGGAAGTGAAC+TGG | - | chr4.4:31749103-31749122 | None:intergenic | 40.0% | |
| TTGTACTGCTCCTAGTTCAT+AGG | + | chr4.4:31749301-31749320 | MS.gene059359:intron | 40.0% | |
| ! | AATTGGTCGACCAACTTTTC+AGG | + | chr4.4:31747076-31747095 | MS.gene059359:intron | 40.0% |
| ! | ATGATGGGAAATGTCCAAAG+GGG | - | chr4.4:31749369-31749388 | None:intergenic | 40.0% |
| ! | GAATGATGGGAAATGTCCAA+AGG | - | chr4.4:31749371-31749390 | None:intergenic | 40.0% |
| ! | GTGGGGCACTTATAAAACAA+GGG | + | chr4.4:31749405-31749424 | MS.gene059359:intron | 40.0% |
| ! | GTTGATGTGGCTTTTTGTGT+TGG | + | chr4.4:31748579-31748598 | MS.gene059359:intron | 40.0% |
| ! | TCTTGTGTGCCATTCTACAA+GGG | - | chr4.4:31749251-31749270 | None:intergenic | 40.0% |
| ! | TTCACAGTTGACATTTGGTG+GGG | + | chr4.4:31749388-31749407 | MS.gene059359:intron | 40.0% |
| !! | CGTTTCGGTTTGGATTGATT+TGG | + | chr4.4:31746709-31746728 | MS.gene059359:intron | 40.0% |
| !! | GATCTTCATTGGCTTCAAAG+TGG | - | chr4.4:31749062-31749081 | None:intergenic | 40.0% |
| !! | TGTAAGTTGATCCTCCATAG+TGG | + | chr4.4:31747211-31747230 | MS.gene059359:intron | 40.0% |
| !! | TTTGTGTCTAGCTCTCCAAA+TGG | + | chr4.4:31749603-31749622 | MS.gene059359:intron | 40.0% |
| AATAGCCTAAGCAGACCCAT+AGG | + | chr4.4:31749020-31749039 | MS.gene059359:intron | 45.0% | |
| ACCTCTCCCGTTTCATATTG+AGG | + | chr4.4:31749183-31749202 | MS.gene059359:intron | 45.0% | |
| AGTGGGGTCTATTACCAAGT+GGG | + | chr4.4:31749534-31749553 | MS.gene059359:intron | 45.0% | |
| ATAGCCTAAGCAGACCCATA+GGG | + | chr4.4:31749021-31749040 | MS.gene059359:intron | 45.0% | |
| ATGGGGAGGATTGTAAAGGA+AGG | - | chr4.4:31749114-31749133 | None:intergenic | 45.0% | |
| ATGGTACAGACAACAGTGAG+TGG | + | chr4.4:31749980-31749999 | MS.gene059359:intron | 45.0% | |
| CAAGCAAATATCCGCTGTCT+AGG | + | chr4.4:31747164-31747183 | MS.gene059359:intron | 45.0% | |
| CATCTCTTAGGGTTGAAGCT+AGG | + | chr4.4:31747813-31747832 | MS.gene059359:intron | 45.0% | |
| CGAAGAGTTCGGATTGTATC+CGG | - | chr4.4:31748812-31748831 | None:intergenic | 45.0% | |
| CGGGAGAGGTTAGAATAGAA+AGG | - | chr4.4:31749173-31749192 | None:intergenic | 45.0% | |
| CTCCCGTTTCATATTGAGGA+AGG | + | chr4.4:31749187-31749206 | MS.gene059359:intron | 45.0% | |
| CTGAAAGAAGGCAATCAAGC+TGG | + | chr4.4:31749430-31749449 | MS.gene059359:intron | 45.0% | |
| GCCACATCAACTTGAAGCAT+TGG | - | chr4.4:31748570-31748589 | None:intergenic | 45.0% | |
| GTAGGGTTCCCTTCAGTTTA+AGG | - | chr4.4:31748509-31748528 | None:intergenic | 45.0% | |
| TAATCACTCCCTTTATGGGG+AGG | - | chr4.4:31749128-31749147 | None:intergenic | 45.0% | |
| TAATCGTGACACAGCCACTA+TGG | - | chr4.4:31747228-31747247 | None:intergenic | 45.0% | |
| TAGTGGGGTCTATTACCAAG+TGG | + | chr4.4:31749533-31749552 | MS.gene059359:intron | 45.0% | |
| TATTTCCTCGGCGAAGAGTT+CGG | - | chr4.4:31748823-31748842 | None:intergenic | 45.0% | |
| TCCTCAATATGAAACGGGAG+AGG | - | chr4.4:31749187-31749206 | None:intergenic | 45.0% | |
| TCTTGTGTGAGACAAAGGCA+TGG | + | chr4.4:31748122-31748141 | MS.gene059359:intron | 45.0% | |
| TGGTACAGACAACAGTGAGT+GGG | + | chr4.4:31749981-31750000 | MS.gene059359:intron | 45.0% | |
| TTATGTCTCTACGACGATGG+TGG | + | chr4.4:31746982-31747001 | MS.gene059359:intron | 45.0% | |
| ! | CGTTTGGGTTTCTTGGAAGA+AGG | - | chr4.4:31746430-31746449 | None:intergenic | 45.0% |
| ! | CTCGAAACGTTTGGGTTTCT+TGG | - | chr4.4:31746437-31746456 | None:intergenic | 45.0% |
| ! | CTCTTGTGTGCCATTCTACA+AGG | - | chr4.4:31749252-31749271 | None:intergenic | 45.0% |
| ! | CTTGTGTGAGACAAAGGCAT+GGG | + | chr4.4:31748123-31748142 | MS.gene059359:intron | 45.0% |
| ! | GGTGGGGCACTTATAAAACA+AGG | + | chr4.4:31749404-31749423 | MS.gene059359:intron | 45.0% |
| ! | TGTGCCATTCTACAAGGGAA+AGG | - | chr4.4:31749246-31749265 | None:intergenic | 45.0% |
| !! | GCCAATGCTTCAAGTTGATG+TGG | + | chr4.4:31748566-31748585 | MS.gene059359:intron | 45.0% |
| !! | ATAAAAAAAAATAAAAAAAG+AGG | - | chr4.4:31746822-31746841 | None:intergenic | 5.0% |
| ACTCGATTCCGACGTAACCA+TGG | + | chr4.4:31746369-31746388 | MS.gene059359:CDS | 50.0% | |
| ACTCGTCAAGTGTGTCCTCT+TGG | + | chr4.4:31749880-31749899 | MS.gene059359:CDS | 50.0% | |
| AGGGAGAGGATTCAAACTCG+TGG | - | chr4.4:31749463-31749482 | None:intergenic | 50.0% | |
| AGTACAAGTTGCCACCCCTT+TGG | + | chr4.4:31749352-31749371 | MS.gene059359:intron | 50.0% | |
| ATGGGAAATGTCCAAAGGGG+TGG | - | chr4.4:31749366-31749385 | None:intergenic | 50.0% | |
| CTAACTTCCCTATCCCTACC+TGG | - | chr4.4:31748258-31748277 | None:intergenic | 50.0% | |
| CTGCTTTGATCTTGGCTGCA+AGG | + | chr4.4:31747895-31747914 | MS.gene059359:intron | 50.0% | |
| GGGTTTCTTGGAAGAAGGAC+CGG | - | chr4.4:31746425-31746444 | None:intergenic | 50.0% | |
| TTTCTTGGAAGAAGGACCGG+CGG | - | chr4.4:31746422-31746441 | None:intergenic | 50.0% | |
| ! | CGAGGAATGCACTGTTGCTT+GGG | + | chr4.4:31746782-31746801 | MS.gene059359:CDS | 50.0% |
| ! | GAGGAATGCACTGTTGCTTG+GGG | + | chr4.4:31746783-31746802 | MS.gene059359:CDS | 50.0% |
| !! | TAGCACTGGCCTGATTAGCT+TGG | - | chr4.4:31746758-31746777 | None:intergenic | 50.0% |
| ACAATCCGAACTCTTCGCCG+AGG | + | chr4.4:31748815-31748834 | MS.gene059359:intron | 55.0% | |
| AGTGGAACGCTGTTGCTCTC+TGG | + | chr4.4:31746464-31746483 | MS.gene059359:CDS | 55.0% | |
| CCTAAGCAGACCCATAGGGT+AGG | + | chr4.4:31749025-31749044 | MS.gene059359:intron | 55.0% | |
| CCTACCCTATGGGTCTGCTT+AGG | - | chr4.4:31749028-31749047 | None:intergenic | 55.0% | |
| GCATTCCTCGCTAGTAGCAC+TGG | - | chr4.4:31746772-31746791 | None:intergenic | 55.0% | |
| GCGAGGAATGCACTGTTGCT+TGG | + | chr4.4:31746781-31746800 | MS.gene059359:CDS | 55.0% | |
| GTGGAACGCTGTTGCTCTCT+GGG | + | chr4.4:31746465-31746484 | MS.gene059359:CDS | 55.0% | |
| TCGTGACACAGCCACTATGG+AGG | - | chr4.4:31747225-31747244 | None:intergenic | 55.0% | |
| !! | ACATGATGGTGGGACCCACT+TGG | - | chr4.4:31749551-31749570 | None:intergenic | 55.0% |
| ACGCTGTTGCTCTCTGGGCT+TGG | + | chr4.4:31746470-31746489 | MS.gene059359:CDS | 60.0% | |
| CGCTGTTGCTCTCTGGGCTT+GGG | + | chr4.4:31746471-31746490 | MS.gene059359:CDS | 60.0% | |
| GACGTAACCATGGTTCCCGC+CGG | + | chr4.4:31746379-31746398 | MS.gene059359:CDS | 60.0% | |
| GCTGTTGCTCTCTGGGCTTG+GGG | + | chr4.4:31746472-31746491 | MS.gene059359:CDS | 60.0% | |
| GGCGGGAACCATGGTTACGT+CGG | - | chr4.4:31746380-31746399 | None:intergenic | 60.0% | |
| ! | TCAGGCCAGTGCTACTAGCG+AGG | + | chr4.4:31746764-31746783 | MS.gene059359:CDS | 60.0% |
| CTGCTTGAAGGTTCGCCGGC+GGG | - | chr4.4:31746397-31746416 | None:intergenic | 65.0% | |
| GAACCTTCAAGCAGCGCCGC+CGG | + | chr4.4:31746403-31746422 | MS.gene059359:CDS | 65.0% | |
| GCTGCTTGAAGGTTCGCCGG+CGG | - | chr4.4:31746398-31746417 | None:intergenic | 65.0% | |
| GGCGCTGCTTGAAGGTTCGC+CGG | - | chr4.4:31746401-31746420 | None:intergenic | 65.0% | |
| AGGTTCGCCGGCGGGAACCA+TGG | - | chr4.4:31746389-31746408 | None:intergenic | 70.0% | |
| GGACCGGCGGCGCTGCTTGA+AGG | - | chr4.4:31746409-31746428 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 31746361 | 31750026 | 31746361 | ID=MS.gene059359 |
| chr4.4 | mRNA | 31746361 | 31750026 | 31746361 | ID=MS.gene059359.t1;Parent=MS.gene059359 |
| chr4.4 | exon | 31746361 | 31746493 | 31746361 | ID=MS.gene059359.t1.exon1;Parent=MS.gene059359.t1 |
| chr4.4 | CDS | 31746361 | 31746493 | 31746361 | ID=cds.MS.gene059359.t1;Parent=MS.gene059359.t1 |
| chr4.4 | exon | 31746601 | 31746651 | 31746601 | ID=MS.gene059359.t1.exon2;Parent=MS.gene059359.t1 |
| chr4.4 | CDS | 31746601 | 31746651 | 31746601 | ID=cds.MS.gene059359.t1;Parent=MS.gene059359.t1 |
| chr4.4 | exon | 31746745 | 31746804 | 31746745 | ID=MS.gene059359.t1.exon3;Parent=MS.gene059359.t1 |
| chr4.4 | CDS | 31746745 | 31746804 | 31746745 | ID=cds.MS.gene059359.t1;Parent=MS.gene059359.t1 |
| chr4.4 | exon | 31749830 | 31749901 | 31749830 | ID=MS.gene059359.t1.exon4;Parent=MS.gene059359.t1 |
| chr4.4 | CDS | 31749830 | 31749901 | 31749830 | ID=cds.MS.gene059359.t1;Parent=MS.gene059359.t1 |
| chr4.4 | exon | 31749989 | 31750026 | 31749989 | ID=MS.gene059359.t1.exon5;Parent=MS.gene059359.t1 |
| chr4.4 | CDS | 31749989 | 31750026 | 31749989 | ID=cds.MS.gene059359.t1;Parent=MS.gene059359.t1 |
| Gene Sequence |
| Protein sequence |
