Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059481.t1 | AES58848.2 | 95.5 | 243 | 9 | 2 | 1 | 242 | 1 | 242 | 1.80E-116 | 428.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059481.t1 | Q6H500 | 57.1 | 175 | 72 | 2 | 68 | 242 | 24 | 195 | 1.5e-34 | 147.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059481.t1 | G7I545 | 95.5 | 243 | 9 | 2 | 1 | 242 | 1 | 242 | 1.3e-116 | 428.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene059481.t1 | TF | bZIP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059104 | MS.gene059481 | 0.806438 | 8.23E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059481.t1 | MTR_1g008990 | 95.473 | 243 | 9 | 2 | 1 | 242 | 1 | 242 | 1.99e-158 | 440 |
| MS.gene059481.t1 | MTR_1g008990 | 95.473 | 243 | 9 | 2 | 1 | 242 | 1 | 242 | 3.82e-157 | 439 |
| MS.gene059481.t1 | MTR_3g109310 | 69.399 | 183 | 35 | 6 | 63 | 242 | 33 | 197 | 2.23e-71 | 220 |
| MS.gene059481.t1 | MTR_1g080920 | 53.719 | 121 | 54 | 1 | 124 | 242 | 161 | 281 | 5.37e-23 | 96.7 |
| MS.gene059481.t1 | MTR_3g110010 | 77.941 | 68 | 15 | 0 | 175 | 242 | 633 | 700 | 1.40e-21 | 93.6 |
| MS.gene059481.t1 | MTR_3g109982 | 76.471 | 68 | 16 | 0 | 175 | 242 | 649 | 716 | 3.53e-21 | 92.4 |
| MS.gene059481.t1 | MTR_7g115120 | 51.938 | 129 | 47 | 3 | 117 | 242 | 150 | 266 | 1.56e-20 | 89.7 |
| MS.gene059481.t1 | MTR_7g115140 | 43.689 | 103 | 57 | 1 | 140 | 242 | 104 | 205 | 7.04e-19 | 82.0 |
| MS.gene059481.t1 | MTR_3g117120 | 42.667 | 75 | 43 | 0 | 168 | 242 | 27 | 101 | 7.47e-12 | 62.0 |
| MS.gene059481.t1 | MTR_7g029400 | 38.938 | 113 | 62 | 2 | 128 | 240 | 48 | 153 | 8.95e-11 | 59.7 |
| MS.gene059481.t1 | MTR_1g022495 | 38.298 | 94 | 57 | 1 | 143 | 236 | 3 | 95 | 9.23e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059481.t1 | AT5G24800 | 58.824 | 136 | 47 | 3 | 112 | 242 | 62 | 193 | 2.40e-40 | 140 |
| MS.gene059481.t1 | AT5G28770 | 60.227 | 88 | 35 | 0 | 155 | 242 | 137 | 224 | 8.27e-20 | 85.5 |
| MS.gene059481.t1 | AT5G28770 | 60.227 | 88 | 35 | 0 | 155 | 242 | 130 | 217 | 1.15e-19 | 86.3 |
| MS.gene059481.t1 | AT5G28770 | 60.227 | 88 | 35 | 0 | 155 | 242 | 137 | 224 | 1.26e-19 | 86.3 |
| MS.gene059481.t1 | AT4G02640 | 52.475 | 101 | 46 | 1 | 144 | 242 | 194 | 294 | 6.15e-12 | 65.1 |
| MS.gene059481.t1 | AT4G02640 | 52.475 | 101 | 46 | 1 | 144 | 242 | 194 | 294 | 6.33e-12 | 65.1 |
| MS.gene059481.t1 | AT4G02640 | 52.475 | 101 | 46 | 1 | 144 | 242 | 188 | 288 | 7.13e-12 | 64.7 |
| MS.gene059481.t1 | AT4G02640 | 52.475 | 101 | 46 | 1 | 144 | 242 | 188 | 288 | 7.42e-12 | 64.7 |
| MS.gene059481.t1 | AT1G75390 | 44.444 | 72 | 40 | 0 | 168 | 239 | 38 | 109 | 2.04e-11 | 61.2 |
| MS.gene059481.t1 | AT2G18160 | 39.362 | 94 | 47 | 1 | 146 | 239 | 16 | 99 | 2.53e-11 | 60.8 |
| MS.gene059481.t1 | AT3G30530 | 32.593 | 135 | 79 | 1 | 118 | 240 | 16 | 150 | 3.24e-11 | 60.8 |
| MS.gene059481.t1 | AT1G75390 | 44.776 | 67 | 37 | 0 | 168 | 234 | 38 | 104 | 6.75e-11 | 58.5 |
Find 55 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTCTTGGGAGTGAGGTTT+TGG | 0.180329 | 1.3:-11111204 | None:intergenic |
| GGCAGAATGGTGCTCCATTT+TGG | 0.285783 | 1.3:-11108466 | None:intergenic |
| GTCATCGAAGCTGGAGAATA+TGG | 0.297219 | 1.3:-11108497 | None:intergenic |
| CATCTGTAAGCTGCTTAAAT+AGG | 0.310185 | 1.3:-11113177 | None:intergenic |
| TTTGGCAGACCTTGAGGTTC+AGG | 0.310946 | 1.3:+11112992 | MS.gene059481:CDS |
| CCTGCGAAATGGAACCAAAA+TGG | 0.330729 | 1.3:+11108452 | None:intergenic |
| CTAAGACGCTTCATATCAAC+AGG | 0.337570 | 1.3:-11112208 | None:intergenic |
| TGCAGTGATGGTGGAGTTCT+TGG | 0.341951 | 1.3:-11111218 | None:intergenic |
| AAGAAGAAAACAAGCACATT+TGG | 0.358483 | 1.3:+11112974 | MS.gene059481:CDS |
| TGTTGTTGTAGTCACTCCTT+TGG | 0.367802 | 1.3:-11112119 | None:intergenic |
| AGTATTACCGGTGGCAGAAA+TGG | 0.392731 | 1.3:-11111260 | None:intergenic |
| ATTGTTGTTTCGACGGTAAC+GGG | 0.405328 | 1.3:-11108568 | None:intergenic |
| CCAGCTTCGATGACCTCAAA+TGG | 0.421645 | 1.3:+11108506 | MS.gene059481:CDS |
| CTGGAGAATATGGAGGTTGC+TGG | 0.422279 | 1.3:-11108487 | None:intergenic |
| CAAACAAGAGTATTATTTGT+TGG | 0.433570 | 1.3:-11111178 | None:intergenic |
| GATTGTTGTTTCGACGGTAA+CGG | 0.434855 | 1.3:-11108569 | None:intergenic |
| TGTTAGCATCGCGAAATTGT+TGG | 0.440152 | 1.3:-11113204 | None:intergenic |
| TTGATATGAAGCGTCTTAGA+AGG | 0.440492 | 1.3:+11112212 | MS.gene059481:CDS |
| CCATTTGAGGTCATCGAAGC+TGG | 0.443299 | 1.3:-11108506 | None:intergenic |
| TTAGGTTGAACAGCTGAGGC+TGG | 0.444559 | 1.3:+11113144 | MS.gene059481:intron |
| CGGTGGCAGAAATGGATGAT+TGG | 0.450015 | 1.3:-11111252 | None:intergenic |
| ACATCGCCGACACCGATGAA+TGG | 0.462932 | 1.3:-11108625 | None:intergenic |
| ATTCTGCTGTGATCCATTTG+AGG | 0.470171 | 1.3:-11108519 | None:intergenic |
| GCAGTGATGGTGGAGTTCTT+GGG | 0.488823 | 1.3:-11111217 | None:intergenic |
| TGGTGGAGTTCTTGGGAGTG+AGG | 0.489497 | 1.3:-11111210 | None:intergenic |
| GGTGGCAGAAATGGATGATT+GGG | 0.493037 | 1.3:-11111251 | None:intergenic |
| ACTGACCAGATTATGAAAAT+CGG | 0.504341 | 1.3:-11108674 | None:intergenic |
| CGATGTAAAACCGTGTAAGA+TGG | 0.513999 | 1.3:+11108600 | MS.gene059481:CDS |
| TGTTGAAGCTTTAAGAGCTA+AGG | 0.529338 | 1.3:+11113252 | MS.gene059481:CDS |
| AGCTCTTAAAGCTTCAACAT+CGG | 0.530694 | 1.3:-11113248 | None:intergenic |
| GCTTCATCATCTTCATCAGA+TGG | 0.530813 | 1.3:-11112160 | None:intergenic |
| CTCAATAGTTGCAGTGATGG+TGG | 0.531409 | 1.3:-11111227 | None:intergenic |
| ACATGTTGAAAATGAAGTTA+CGG | 0.531605 | 1.3:-11111149 | None:intergenic |
| TTTCTTAGGTTGAACAGCTG+AGG | 0.532387 | 1.3:+11113140 | MS.gene059481:intron |
| CTTGGTTTATTAGCTGACAC+TGG | 0.537426 | 1.3:-11112079 | None:intergenic |
| GTCGTCGATTGTTGTTTCGA+CGG | 0.537944 | 1.3:-11108575 | None:intergenic |
| CAATCATCCATTTCTGCCAC+CGG | 0.540484 | 1.3:+11111253 | MS.gene059481:CDS |
| AGCATCGCGAAATTGTTGGC+TGG | 0.553901 | 1.3:-11113200 | None:intergenic |
| AGTAGAGAAAATCAAACCAA+AGG | 0.561027 | 1.3:+11112103 | MS.gene059481:CDS |
| GGTGTCGGCGATGTTTGCTC+TGG | 0.562967 | 1.3:+11108634 | MS.gene059481:CDS |
| AGCACATTTGGCAGACCTTG+AGG | 0.572432 | 1.3:+11112986 | MS.gene059481:CDS |
| TCTGATGAAGATGATGAAGC+AGG | 0.584800 | 1.3:+11112163 | MS.gene059481:CDS |
| GGGTTTGTACTTTGTTCACA+AGG | 0.595616 | 1.3:-11112187 | None:intergenic |
| AATTAATTACCTGAACCTCA+AGG | 0.595756 | 1.3:-11113001 | None:intergenic |
| ATGGATCCATTCATCGGTGT+CGG | 0.602190 | 1.3:+11108619 | MS.gene059481:CDS |
| GGACTCAATAGTTGCAGTGA+TGG | 0.603647 | 1.3:-11111230 | None:intergenic |
| TATGGAGGTTGCTGGCAGAA+TGG | 0.618667 | 1.3:-11108479 | None:intergenic |
| GGAGTGACTACAACAACAAG+TGG | 0.619797 | 1.3:+11112124 | MS.gene059481:CDS |
| TGTAAGATGGATCCATTCAT+CGG | 0.623168 | 1.3:+11108613 | MS.gene059481:CDS |
| ATGAATGGATCCATCTTACA+CGG | 0.644634 | 1.3:-11108610 | None:intergenic |
| TTCATCAGATGGATCACGTG+AGG | 0.658342 | 1.3:-11112149 | None:intergenic |
| GACCAGATTATGAAAATCGG+CGG | 0.666849 | 1.3:-11108671 | None:intergenic |
| CTAATCGCGAGTCTGCCAGA+AGG | 0.671078 | 1.3:+11112946 | MS.gene059481:CDS |
| ATCGAAGCTGGAGAATATGG+AGG | 0.698276 | 1.3:-11108494 | None:intergenic |
| TAAGACGCTTCATATCAACA+GGG | 0.724365 | 1.3:-11112207 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATAAAATCACATTTAA+AGG | - | chr1.3:11112766-11112785 | None:intergenic | 10.0% |
| !! | ATATAATAGTAAATATAAAG+TGG | + | chr1.3:11111568-11111587 | MS.gene059481:intron | 10.0% |
| !! | ATGATATATATAAACTATTA+TGG | - | chr1.3:11112016-11112035 | None:intergenic | 10.0% |
| !! | CAAAATAAATAAATATAAAG+TGG | + | chr1.3:11111619-11111638 | MS.gene059481:intron | 10.0% |
| !! | TAAAAAAAAATGAATAGAAA+AGG | + | chr1.3:11110465-11110484 | MS.gene059481:intron | 10.0% |
| !! | TTATGACAAAATAATAAATT+CGG | + | chr1.3:11109188-11109207 | MS.gene059481:intron | 10.0% |
| !!! | AAACTAAATTTTACATTTTA+AGG | - | chr1.3:11108957-11108976 | None:intergenic | 10.0% |
| !!! | CACTTTATATTTATTTATTT+TGG | - | chr1.3:11111621-11111640 | None:intergenic | 10.0% |
| !!! | CATAATTTTAACATTTTAAT+TGG | - | chr1.3:11111469-11111488 | None:intergenic | 10.0% |
| !!! | GTTTTTAATTGAATTAATTT+TGG | - | chr1.3:11112872-11112891 | None:intergenic | 10.0% |
| !!! | TTTATTATATTTTGTTTCTT+AGG | + | chr1.3:11113126-11113145 | MS.gene059481:intron | 10.0% |
| !!! | TTTTTTTTTTTTGTTACAAA+AGG | - | chr1.3:11113053-11113072 | None:intergenic | 10.0% |
| !! | AATTTATAGTAAGATGAATT+AGG | + | chr1.3:11110298-11110317 | MS.gene059481:intron | 15.0% |
| !! | ATAGAATACATCAATTATAA+AGG | - | chr1.3:11109085-11109104 | None:intergenic | 15.0% |
| !! | ATATAATAAAATTCTCATAG+TGG | - | chr1.3:11113116-11113135 | None:intergenic | 15.0% |
| !! | TAAGTAATCTTATCTTATAT+TGG | - | chr1.3:11111880-11111899 | None:intergenic | 15.0% |
| !! | TCTTATAATATATAAACTCA+TGG | - | chr1.3:11112422-11112441 | None:intergenic | 15.0% |
| !! | TTAAAAAGAAACAATTCATT+AGG | - | chr1.3:11110800-11110819 | None:intergenic | 15.0% |
| !!! | ATTTTATAAATTCTCAATGT+TGG | + | chr1.3:11112276-11112295 | MS.gene059481:intron | 15.0% |
| !!! | ATTTTTTTTGTCTTTTACTT+TGG | + | chr1.3:11109658-11109677 | MS.gene059481:intron | 15.0% |
| !!! | TTAGATACTTTTATTTCAAA+AGG | + | chr1.3:11109942-11109961 | MS.gene059481:intron | 15.0% |
| !!! | TTTCTATGTTGTTTTATTTA+GGG | + | chr1.3:11110719-11110738 | MS.gene059481:intron | 15.0% |
| !!! | TTTTCTATGTTGTTTTATTT+AGG | + | chr1.3:11110718-11110737 | MS.gene059481:intron | 15.0% |
| !!! | TTTTTTTTGTCTTTTACTTT+GGG | + | chr1.3:11109659-11109678 | MS.gene059481:intron | 15.0% |
| !! | AAATCATCATTTATTATTGC+TGG | + | chr1.3:11108828-11108847 | MS.gene059481:intron | 20.0% |
| !! | AATATAATAGAAAAGAAGAG+AGG | - | chr1.3:11110379-11110398 | None:intergenic | 20.0% |
| !! | AATATAATAGAACAACAACA+TGG | + | chr1.3:11110488-11110507 | MS.gene059481:intron | 20.0% |
| !! | ACAATGAAGTTATCTATAAA+GGG | - | chr1.3:11111953-11111972 | None:intergenic | 20.0% |
| !! | ACATGGATTTCTTAAATTTA+TGG | - | chr1.3:11111683-11111702 | None:intergenic | 20.0% |
| !! | AGAGAAATTATAATCTAACA+AGG | + | chr1.3:11112468-11112487 | MS.gene059481:intron | 20.0% |
| !! | ATATAATAGAAAAGAAGAGA+GGG | - | chr1.3:11110378-11110397 | None:intergenic | 20.0% |
| !! | ATATAATAGAACAACAACAT+GGG | + | chr1.3:11110489-11110508 | MS.gene059481:intron | 20.0% |
| !! | ATGGAATTTGGTATATTTAA+AGG | + | chr1.3:11109428-11109447 | MS.gene059481:intron | 20.0% |
| !! | ATTAACCAAACAACAAAAAT+AGG | - | chr1.3:11110183-11110202 | None:intergenic | 20.0% |
| !! | TAAATATAAAGTGGAGTTTA+GGG | + | chr1.3:11111577-11111596 | MS.gene059481:intron | 20.0% |
| !! | TACAATGAAGTTATCTATAA+AGG | - | chr1.3:11111954-11111973 | None:intergenic | 20.0% |
| !! | TCTACATATGAAAATTTGAT+AGG | + | chr1.3:11110874-11110893 | MS.gene059481:intron | 20.0% |
| !! | TCTATCTTAATTCTTTGATT+TGG | - | chr1.3:11109382-11109401 | None:intergenic | 20.0% |
| !! | TGGAATTTGGTATATTTAAA+GGG | + | chr1.3:11109429-11109448 | MS.gene059481:intron | 20.0% |
| !! | TTAACATTTAGCCTATTAAT+AGG | - | chr1.3:11110917-11110936 | None:intergenic | 20.0% |
| !! | TTAACCAAACAACAAAAATA+GGG | - | chr1.3:11110182-11110201 | None:intergenic | 20.0% |
| !! | TTCAAAAAAATTCTCAATGT+TGG | + | chr1.3:11112303-11112322 | MS.gene059481:intron | 20.0% |
| !!! | AAATTGATTTTGGTATGTTT+TGG | + | chr1.3:11112665-11112684 | MS.gene059481:intron | 20.0% |
| !!! | AGAAATATGTTTCTTTTCTT+TGG | + | chr1.3:11111378-11111397 | MS.gene059481:intron | 20.0% |
| !!! | AGAGTTTTTTTTTATGTGAA+TGG | + | chr1.3:11109409-11109428 | MS.gene059481:intron | 20.0% |
| !!! | ATATATCATAGAGCTTATTT+TGG | + | chr1.3:11112027-11112046 | MS.gene059481:intron | 20.0% |
| !!! | ATTAAAGAAGAACTTTTACT+AGG | + | chr1.3:11112356-11112375 | MS.gene059481:intron | 20.0% |
| !!! | ATTATAAAGGTTGATTTGAT+TGG | - | chr1.3:11109072-11109091 | None:intergenic | 20.0% |
| !!! | ATTTATATATACCTTTTGCT+TGG | + | chr1.3:11110761-11110780 | MS.gene059481:intron | 20.0% |
| !!! | ATTTATTTTGGTACAAAAGA+GGG | - | chr1.3:11111609-11111628 | None:intergenic | 20.0% |
| !!! | GTATCACTACAATTTTAATT+TGG | - | chr1.3:11109280-11109299 | None:intergenic | 20.0% |
| !!! | TACATTTTAAGGTGAATAAT+CGG | - | chr1.3:11108946-11108965 | None:intergenic | 20.0% |
| !!! | TATATAACATAGAGTATTAC+CGG | - | chr1.3:11111275-11111294 | None:intergenic | 20.0% |
| !!! | TATATTTACTTTTCATGAAG+TGG | + | chr1.3:11110605-11110624 | MS.gene059481:intron | 20.0% |
| !!! | TATTTATTTTGGTACAAAAG+AGG | - | chr1.3:11111610-11111629 | None:intergenic | 20.0% |
| !!! | TCAATAATTCATGTTTGTTT+TGG | - | chr1.3:11109315-11109334 | None:intergenic | 20.0% |
| !!! | TGAAGACTTAAAATTGATTT+TGG | + | chr1.3:11112655-11112674 | MS.gene059481:intron | 20.0% |
| !!! | TGCATATTTGAATTTACTTT+TGG | + | chr1.3:11112614-11112633 | MS.gene059481:intron | 20.0% |
| !!! | TTCTATGTTGTTTTATTTAG+GGG | + | chr1.3:11110720-11110739 | MS.gene059481:intron | 20.0% |
| !!! | TTTTGGATTGAATTGTATAA+TGG | + | chr1.3:11112044-11112063 | MS.gene059481:intron | 20.0% |
| !!! | TTTTTAATAGTGTTTGATTG+AGG | - | chr1.3:11110403-11110422 | None:intergenic | 20.0% |
| !!! | TTTTTTATGTGAATGGAATT+TGG | + | chr1.3:11109416-11109435 | MS.gene059481:intron | 20.0% |
| ! | AATAAAGACGTGTAAATGAA+AGG | + | chr1.3:11110823-11110842 | MS.gene059481:intron | 25.0% |
| ! | ACATGTTGAAAATGAAGTTA+CGG | - | chr1.3:11111152-11111171 | None:intergenic | 25.0% |
| ! | AGAGTTAACAACCTATTAAT+AGG | + | chr1.3:11110903-11110922 | MS.gene059481:intron | 25.0% |
| ! | ATAAAGTGGAGTCTTAAAAT+AGG | + | chr1.3:11111633-11111652 | MS.gene059481:intron | 25.0% |
| ! | ATAACTAGTGATTTCAAAGA+TGG | - | chr1.3:11113080-11113099 | None:intergenic | 25.0% |
| ! | CAATAATTCTATTACTAGCT+AGG | - | chr1.3:11110632-11110651 | None:intergenic | 25.0% |
| ! | GAAATTATAATCTAACAAGG+TGG | + | chr1.3:11112471-11112490 | MS.gene059481:intron | 25.0% |
| ! | GACAAATTGAAAAGGAATAT+AGG | + | chr1.3:11110442-11110461 | MS.gene059481:intron | 25.0% |
| ! | GAGATTCCTATTTGAATAAA+GGG | + | chr1.3:11110145-11110164 | MS.gene059481:intron | 25.0% |
| ! | GTAAATATAAAGTGGAGTTT+AGG | + | chr1.3:11111576-11111595 | MS.gene059481:intron | 25.0% |
| ! | TAATATATAAACTCATGGTC+TGG | - | chr1.3:11112417-11112436 | None:intergenic | 25.0% |
| ! | TAGAAAAGCTAAGCTATAAA+AGG | - | chr1.3:11110705-11110724 | None:intergenic | 25.0% |
| ! | TCATTTATTATTGCTGGTAA+TGG | + | chr1.3:11108834-11108853 | MS.gene059481:intron | 25.0% |
| ! | TGAGATTCCTATTTGAATAA+AGG | + | chr1.3:11110144-11110163 | MS.gene059481:intron | 25.0% |
| ! | TTACAAGTGACAAATTGAAA+AGG | + | chr1.3:11110434-11110453 | MS.gene059481:intron | 25.0% |
| ! | TTTGCTAGCAAAATTTATAC+TGG | - | chr1.3:11111318-11111337 | None:intergenic | 25.0% |
| !! | AAAATTCTCATAGTGGAAAT+TGG | - | chr1.3:11113109-11113128 | None:intergenic | 25.0% |
| !! | CATATTTGTTAAGAGTCTAT+TGG | - | chr1.3:11110577-11110596 | None:intergenic | 25.0% |
| !! | GACTAATACAAGGTTTTTAT+TGG | + | chr1.3:11109967-11109986 | MS.gene059481:intron | 25.0% |
| !! | GCTATAATTCATTCTTTTCT+TGG | - | chr1.3:11110352-11110371 | None:intergenic | 25.0% |
| !! | GGACATAATTTTCTTATAGA+AGG | - | chr1.3:11110527-11110546 | None:intergenic | 25.0% |
| !! | GGATTTATCTAGTTCAAAAT+AGG | - | chr1.3:11112396-11112415 | None:intergenic | 25.0% |
| !! | TTAGAGTAATGTTATTTGTC+TGG | - | chr1.3:11111076-11111095 | None:intergenic | 25.0% |
| !!! | ACATTTTAAGGTGAATAATC+GGG | - | chr1.3:11108945-11108964 | None:intergenic | 25.0% |
| !!! | ATGATTTGTTACCTTCTTTA+AGG | - | chr1.3:11110854-11110873 | None:intergenic | 25.0% |
| !!! | ATTAGAGATATTCAAGTTGT+TGG | + | chr1.3:11109142-11109161 | MS.gene059481:intron | 25.0% |
| !!! | CAAACAAGAGTATTATTTGT+TGG | - | chr1.3:11111181-11111200 | None:intergenic | 25.0% |
| !!! | CATGAACATCTTTTTTTTTG+TGG | - | chr1.3:11109831-11109850 | None:intergenic | 25.0% |
| !!! | CTTTTCTTGGTTAGTTTTTT+AGG | - | chr1.3:11110339-11110358 | None:intergenic | 25.0% |
| !!! | GGGATTTTTAAGATAATTGT+AGG | + | chr1.3:11111723-11111742 | MS.gene059481:intron | 25.0% |
| !!! | TGTTTGTTTTGGTAGAATTA+CGG | - | chr1.3:11109304-11109323 | None:intergenic | 25.0% |
| AAGAAGAAAACAAGCACATT+TGG | + | chr1.3:11112974-11112993 | MS.gene059481:CDS | 30.0% | |
| AATCCATGTAATCATGAAGT+TGG | + | chr1.3:11111694-11111713 | MS.gene059481:intron | 30.0% | |
| AATTAATTACCTGAACCTCA+AGG | - | chr1.3:11113004-11113023 | None:intergenic | 30.0% | |
| ACTAATTGACAACCAAACTT+TGG | + | chr1.3:11110081-11110100 | MS.gene059481:intron | 30.0% | |
| ACTGACCAGATTATGAAAAT+CGG | - | chr1.3:11108677-11108696 | None:intergenic | 30.0% | |
| AGAAAATTATGTCCAATGCA+TGG | + | chr1.3:11110533-11110552 | MS.gene059481:intron | 30.0% | |
| AGTAGAGAAAATCAAACCAA+AGG | + | chr1.3:11112103-11112122 | MS.gene059481:CDS | 30.0% | |
| ATATTTAAAGGGTGAAGCAA+AGG | + | chr1.3:11109440-11109459 | MS.gene059481:intron | 30.0% | |
| CAAACTATATAACTTCAAGC+TGG | - | chr1.3:11112734-11112753 | None:intergenic | 30.0% | |
| CATGTGATATTGAAGAAACT+TGG | - | chr1.3:11110270-11110289 | None:intergenic | 30.0% | |
| GAAAGGAATATCCTTAAAGA+AGG | + | chr1.3:11110840-11110859 | MS.gene059481:intron | 30.0% | |
| TAATACAACCGTAGTTAGTA+GGG | - | chr1.3:11108779-11108798 | None:intergenic | 30.0% | |
| TACACTCTTAATGTGATTTC+AGG | + | chr1.3:11112916-11112935 | MS.gene059481:intron | 30.0% | |
| TATAGCGAATAACCATTGTA+TGG | - | chr1.3:11110001-11110020 | None:intergenic | 30.0% | |
| TATCAAAGTAGAAACTCCAA+AGG | - | chr1.3:11108865-11108884 | None:intergenic | 30.0% | |
| TCAAAAGGAAGACTAATACA+AGG | + | chr1.3:11109957-11109976 | MS.gene059481:intron | 30.0% | |
| TCACATAGCTAGAATTTGAT+TGG | + | chr1.3:11111002-11111021 | MS.gene059481:intron | 30.0% | |
| TGCATAATATATGCAAAGTC+CGG | + | chr1.3:11109788-11109807 | MS.gene059481:intron | 30.0% | |
| TGTAATTATGACTGTTGCAT+TGG | - | chr1.3:11111908-11111927 | None:intergenic | 30.0% | |
| TTAATACAACCGTAGTTAGT+AGG | - | chr1.3:11108780-11108799 | None:intergenic | 30.0% | |
| TTCCATCCCTTTATTCAAAT+AGG | - | chr1.3:11110154-11110173 | None:intergenic | 30.0% | |
| TTCCTATTTGAATAAAGGGA+TGG | + | chr1.3:11110149-11110168 | MS.gene059481:intron | 30.0% | |
| ! | ACTTTGTTTAGTGATGAAGA+AGG | + | chr1.3:11109489-11109508 | MS.gene059481:intron | 30.0% |
| ! | ATTTTCTTATAGAAGGCCAA+AGG | - | chr1.3:11110520-11110539 | None:intergenic | 30.0% |
| ! | CAGTGTACTTTTACTACTTT+AGG | - | chr1.3:11112560-11112579 | None:intergenic | 30.0% |
| ! | CTTTTTGTGTTATGATGCAA+TGG | + | chr1.3:11111808-11111827 | MS.gene059481:intron | 30.0% |
| ! | GTAACTTCATTTTCAACATG+TGG | + | chr1.3:11111151-11111170 | MS.gene059481:CDS | 30.0% |
| !!! | AGTTTTTTAGGAGAAGCATA+GGG | - | chr1.3:11110327-11110346 | None:intergenic | 30.0% |
| !!! | ATCTTTTTTTTTGTGGTGGT+CGG | - | chr1.3:11109824-11109843 | None:intergenic | 30.0% |
| !!! | GAAACCCTATTTTTGTTGTT+TGG | + | chr1.3:11110175-11110194 | MS.gene059481:intron | 30.0% |
| !!! | GAACATCTTTTTTTTTGTGG+TGG | - | chr1.3:11109828-11109847 | None:intergenic | 30.0% |
| !!! | TAGTTTTTTAGGAGAAGCAT+AGG | - | chr1.3:11110328-11110347 | None:intergenic | 30.0% |
| AAACGTTTCCCTACTAACTA+CGG | + | chr1.3:11108768-11108787 | MS.gene059481:intron | 35.0% | |
| AAGGGCTGAATTAAGAACAA+TGG | - | chr1.3:11111114-11111133 | None:intergenic | 35.0% | |
| AAGTTCTATCACAAAACCAC+AGG | - | chr1.3:11109352-11109371 | None:intergenic | 35.0% | |
| AATCATGAAGTTGGCAAGTT+GGG | + | chr1.3:11111703-11111722 | MS.gene059481:intron | 35.0% | |
| AATTATGACTGTTGCATTGG+TGG | - | chr1.3:11111905-11111924 | None:intergenic | 35.0% | |
| ACCTAATAGATACCATGCAT+TGG | - | chr1.3:11110548-11110567 | None:intergenic | 35.0% | |
| ACTGAAACATGAACATCTAG+AGG | - | chr1.3:11109729-11109748 | None:intergenic | 35.0% | |
| AGCTCTTAAAGCTTCAACAT+CGG | - | chr1.3:11113251-11113270 | None:intergenic | 35.0% | |
| AGTCAAACGTTAAACATGCA+TGG | + | chr1.3:11109911-11109930 | MS.gene059481:intron | 35.0% | |
| ATCATACATGTGATCGTATG+TGG | - | chr1.3:11110983-11111002 | None:intergenic | 35.0% | |
| ATGAATGGATCCATCTTACA+CGG | - | chr1.3:11108613-11108632 | None:intergenic | 35.0% | |
| ATTATTGCCCACAATCTTAG+TGG | + | chr1.3:11110645-11110664 | MS.gene059481:intron | 35.0% | |
| CATCTGTAAGCTGCTTAAAT+AGG | - | chr1.3:11113180-11113199 | None:intergenic | 35.0% | |
| CATGTACATGATGACAATAG+AGG | + | chr1.3:11112530-11112549 | MS.gene059481:intron | 35.0% | |
| CCATAAATTCTCTCTGCATA+AGG | + | chr1.3:11109870-11109889 | MS.gene059481:intron | 35.0% | |
| CCTTATGCAGAGAGAATTTA+TGG | - | chr1.3:11109873-11109892 | None:intergenic | 35.0% | |
| CGAATAACCATTGTATGGTT+TGG | - | chr1.3:11109996-11110015 | None:intergenic | 35.0% | |
| CTATTGTCATCATGTACATG+TGG | - | chr1.3:11112530-11112549 | None:intergenic | 35.0% | |
| CTCTTAATGTGATTTCAGGA+AGG | + | chr1.3:11112920-11112939 | MS.gene059481:intron | 35.0% | |
| GCATAAGGTGATTATTTACG+AGG | + | chr1.3:11109885-11109904 | MS.gene059481:intron | 35.0% | |
| GTGTTCAACTTTCACGTTAA+CGG | + | chr1.3:11112793-11112812 | MS.gene059481:intron | 35.0% | |
| TAAGACGCTTCATATCAACA+GGG | - | chr1.3:11112210-11112229 | None:intergenic | 35.0% | |
| TAATCATGAAGTTGGCAAGT+TGG | + | chr1.3:11111702-11111721 | MS.gene059481:intron | 35.0% | |
| TCCAATGCATGGTATCTATT+AGG | + | chr1.3:11110544-11110563 | MS.gene059481:intron | 35.0% | |
| TGTAAGATGGATCCATTCAT+CGG | + | chr1.3:11108613-11108632 | MS.gene059481:CDS | 35.0% | |
| TGTGTTATGATGCAATGGTT+GGG | + | chr1.3:11111813-11111832 | MS.gene059481:intron | 35.0% | |
| TTATTGCCCACAATCTTAGT+GGG | + | chr1.3:11110646-11110665 | MS.gene059481:intron | 35.0% | |
| TTGCCAACTTCATGATTACA+TGG | - | chr1.3:11111700-11111719 | None:intergenic | 35.0% | |
| TTGTGTTATGATGCAATGGT+TGG | + | chr1.3:11111812-11111831 | MS.gene059481:intron | 35.0% | |
| ! | ATAACATAGAGTATTACCGG+TGG | - | chr1.3:11111272-11111291 | None:intergenic | 35.0% |
| ! | ATTATGACTGTTGCATTGGT+GGG | - | chr1.3:11111904-11111923 | None:intergenic | 35.0% |
| ! | GTTTTTGCTTTCCAAGCAAA+AGG | - | chr1.3:11110775-11110794 | None:intergenic | 35.0% |
| ! | TTGATATGAAGCGTCTTAGA+AGG | + | chr1.3:11112212-11112231 | MS.gene059481:CDS | 35.0% |
| ! | TTGATCATGAACTTTTCACG+AGG | + | chr1.3:11108542-11108561 | MS.gene059481:CDS | 35.0% |
| !! | AGAGATATTCAAGTTGTTGG+AGG | + | chr1.3:11109145-11109164 | MS.gene059481:intron | 35.0% |
| !! | ATGTGCTTGTTTTCTTCTTC+TGG | - | chr1.3:11112973-11112992 | None:intergenic | 35.0% |
| !! | GAGATATTCAAGTTGTTGGA+GGG | + | chr1.3:11109146-11109165 | MS.gene059481:intron | 35.0% |
| !! | GTTTGATTTTCTCTACTGCT+TGG | - | chr1.3:11112100-11112119 | None:intergenic | 35.0% |
| !! | TAAAGTGGAGTTTAGGGTTT+TGG | + | chr1.3:11111583-11111602 | MS.gene059481:intron | 35.0% |
| !! | TTGAAGCTTTAAGAGCTAAG+TGG | + | chr1.3:11113254-11113273 | MS.gene059481:CDS | 35.0% |
| !!! | TCTTTTTTTTTGTGGTGGTC+GGG | - | chr1.3:11109823-11109842 | None:intergenic | 35.0% |
| AAGCTTGAAAGTCACGTTAG+AGG | - | chr1.3:11108742-11108761 | None:intergenic | 40.0% | |
| ATTCAGCCCTTCATAATTGC+AGG | + | chr1.3:11111123-11111142 | MS.gene059481:intron | 40.0% | |
| ATTCTGCTGTGATCCATTTG+AGG | - | chr1.3:11108522-11108541 | None:intergenic | 40.0% | |
| CGATGTAAAACCGTGTAAGA+TGG | + | chr1.3:11108600-11108619 | MS.gene059481:CDS | 40.0% | |
| CTAAGACGCTTCATATCAAC+AGG | - | chr1.3:11112211-11112230 | None:intergenic | 40.0% | |
| CTTGGTTTATTAGCTGACAC+TGG | - | chr1.3:11112082-11112101 | None:intergenic | 40.0% | |
| GAAAGCAAACATGAAACCTG+TGG | + | chr1.3:11109333-11109352 | MS.gene059481:intron | 40.0% | |
| GACCAGATTATGAAAATCGG+CGG | - | chr1.3:11108674-11108693 | None:intergenic | 40.0% | |
| GCTTCATCATCTTCATCAGA+TGG | - | chr1.3:11112163-11112182 | None:intergenic | 40.0% | |
| GGGTTTGTACTTTGTTCACA+AGG | - | chr1.3:11112190-11112209 | None:intergenic | 40.0% | |
| GTGTTATGATGCAATGGTTG+GGG | + | chr1.3:11111814-11111833 | MS.gene059481:intron | 40.0% | |
| TCTGATGAAGATGATGAAGC+AGG | + | chr1.3:11112163-11112182 | MS.gene059481:CDS | 40.0% | |
| TGAAGCAAAGGAACTTGTGA+AGG | + | chr1.3:11109452-11109471 | MS.gene059481:intron | 40.0% | |
| TGAGAGACATGTCCAAAGTT+TGG | - | chr1.3:11110096-11110115 | None:intergenic | 40.0% | |
| TGTTAGCATCGCGAAATTGT+TGG | - | chr1.3:11113207-11113226 | None:intergenic | 40.0% | |
| TGTTGTTGTAGTCACTCCTT+TGG | - | chr1.3:11112122-11112141 | None:intergenic | 40.0% | |
| TTGGCTTCCAAACCATACAA+TGG | + | chr1.3:11109986-11110005 | MS.gene059481:intron | 40.0% | |
| ! | ATCATGAACTTTTCACGAGG+CGG | + | chr1.3:11108545-11108564 | MS.gene059481:CDS | 40.0% |
| ! | GTGTTGTCTTTTGAACTCGT+GGG | + | chr1.3:11109596-11109615 | MS.gene059481:intron | 40.0% |
| ! | TGTGTTGTCTTTTGAACTCG+TGG | + | chr1.3:11109595-11109614 | MS.gene059481:intron | 40.0% |
| ! | TTATGACTGTTGCATTGGTG+GGG | - | chr1.3:11111903-11111922 | None:intergenic | 40.0% |
| ! | TTTTCTTCTTCTGGACCTTC+TGG | - | chr1.3:11112964-11112983 | None:intergenic | 40.0% |
| !! | ATTGTTGTTTCGACGGTAAC+GGG | - | chr1.3:11108571-11108590 | None:intergenic | 40.0% |
| !! | CAACATCGGATTTTAGCACT+CGG | - | chr1.3:11113237-11113256 | None:intergenic | 40.0% |
| !! | GATTGTTGTTTCGACGGTAA+CGG | - | chr1.3:11108572-11108591 | None:intergenic | 40.0% |
| !! | TTTCTTAGGTTGAACAGCTG+AGG | + | chr1.3:11113140-11113159 | MS.gene059481:intron | 40.0% |
| !!! | CTTTTTTTTTGTGGTGGTCG+GGG | - | chr1.3:11109822-11109841 | None:intergenic | 40.0% |
| !!! | GCTGGTAATGGTTTTTCCTT+TGG | + | chr1.3:11108846-11108865 | MS.gene059481:intron | 40.0% |
| AACAACATGGGTCGTTCCTT+TGG | + | chr1.3:11110501-11110520 | MS.gene059481:intron | 45.0% | |
| AACACTCCACCTCTTTCACA+AGG | - | chr1.3:11110673-11110692 | None:intergenic | 45.0% | |
| ACAAGGACCCACTAAGATTG+TGG | - | chr1.3:11110656-11110675 | None:intergenic | 45.0% | |
| ACGGCATCCTGCAATTATGA+AGG | - | chr1.3:11111133-11111152 | None:intergenic | 45.0% | |
| AGTATTACCGGTGGCAGAAA+TGG | - | chr1.3:11111263-11111282 | None:intergenic | 45.0% | |
| ATCGAAGCTGGAGAATATGG+AGG | - | chr1.3:11108497-11108516 | None:intergenic | 45.0% | |
| ATGGATCCATTCATCGGTGT+CGG | + | chr1.3:11108619-11108638 | MS.gene059481:CDS | 45.0% | |
| CAAGGACCCACTAAGATTGT+GGG | - | chr1.3:11110655-11110674 | None:intergenic | 45.0% | |
| CAATCATCCATTTCTGCCAC+CGG | + | chr1.3:11111253-11111272 | MS.gene059481:CDS | 45.0% | |
| CGGCATCCTGCAATTATGAA+GGG | - | chr1.3:11111132-11111151 | None:intergenic | 45.0% | |
| CTCAATAGTTGCAGTGATGG+TGG | - | chr1.3:11111230-11111249 | None:intergenic | 45.0% | |
| GGACTCAATAGTTGCAGTGA+TGG | - | chr1.3:11111233-11111252 | None:intergenic | 45.0% | |
| GGAGTGACTACAACAACAAG+TGG | + | chr1.3:11112124-11112143 | MS.gene059481:CDS | 45.0% | |
| GGTGGCAGAAATGGATGATT+GGG | - | chr1.3:11111254-11111273 | None:intergenic | 45.0% | |
| GTCATCGAAGCTGGAGAATA+TGG | - | chr1.3:11108500-11108519 | None:intergenic | 45.0% | |
| TGGACATGTCTCTCAACAGA+AGG | + | chr1.3:11110101-11110120 | MS.gene059481:intron | 45.0% | |
| TGGGAACGCACTACTTTATG+AGG | + | chr1.3:11109615-11109634 | MS.gene059481:intron | 45.0% | |
| TTCATCAGATGGATCACGTG+AGG | - | chr1.3:11112152-11112171 | None:intergenic | 45.0% | |
| ! | AAACAAAGTCCCTGATGACG+TGG | - | chr1.3:11109478-11109497 | None:intergenic | 45.0% |
| ! | AGTTCTTGGGAGTGAGGTTT+TGG | - | chr1.3:11111207-11111226 | None:intergenic | 45.0% |
| ! | GTTCTTGGGAGTGAGGTTTT+GGG | - | chr1.3:11111206-11111225 | None:intergenic | 45.0% |
| ! | TTAGTGGGTCCTTGTGAAAG+AGG | + | chr1.3:11110661-11110680 | MS.gene059481:intron | 45.0% |
| !! | GTCGTCGATTGTTGTTTCGA+CGG | - | chr1.3:11108578-11108597 | None:intergenic | 45.0% |
| !!! | CACCGCCGATTTTCATAATC+TGG | + | chr1.3:11108669-11108688 | MS.gene059481:CDS | 45.0% |
| ACAACTGAGCTAAGCTCACG+AGG | - | chr1.3:11109759-11109778 | None:intergenic | 50.0% | |
| AGCACATTTGGCAGACCTTG+AGG | + | chr1.3:11112986-11113005 | MS.gene059481:CDS | 50.0% | |
| AGCATCGCGAAATTGTTGGC+TGG | - | chr1.3:11113203-11113222 | None:intergenic | 50.0% | |
| CCAGCTTCGATGACCTCAAA+TGG | + | chr1.3:11108506-11108525 | MS.gene059481:CDS | 50.0% | |
| CGGTGGCAGAAATGGATGAT+TGG | - | chr1.3:11111255-11111274 | None:intergenic | 50.0% | |
| CTGGAGAATATGGAGGTTGC+TGG | - | chr1.3:11108490-11108509 | None:intergenic | 50.0% | |
| TATGGAGGTTGCTGGCAGAA+TGG | - | chr1.3:11108482-11108501 | None:intergenic | 50.0% | |
| TTGTGAAGGCCACGTCATCA+GGG | + | chr1.3:11109466-11109485 | MS.gene059481:intron | 50.0% | |
| TTTGGCAGACCTTGAGGTTC+AGG | + | chr1.3:11112992-11113011 | MS.gene059481:CDS | 50.0% | |
| ! | CCATTTGAGGTCATCGAAGC+TGG | - | chr1.3:11108509-11108528 | None:intergenic | 50.0% |
| ! | GGCAGAATGGTGCTCCATTT+TGG | - | chr1.3:11108469-11108488 | None:intergenic | 50.0% |
| !! | GCAGTGATGGTGGAGTTCTT+GGG | - | chr1.3:11111220-11111239 | None:intergenic | 50.0% |
| !! | TGCAGTGATGGTGGAGTTCT+TGG | - | chr1.3:11111221-11111240 | None:intergenic | 50.0% |
| !! | TTAGGTTGAACAGCTGAGGC+TGG | + | chr1.3:11113144-11113163 | MS.gene059481:intron | 50.0% |
| ACATCGCCGACACCGATGAA+TGG | - | chr1.3:11108628-11108647 | None:intergenic | 55.0% | |
| AGCTAAGCTCACGAGGACTG+AGG | - | chr1.3:11109752-11109771 | None:intergenic | 55.0% | |
| CTAATCGCGAGTCTGCCAGA+AGG | + | chr1.3:11112946-11112965 | MS.gene059481:CDS | 55.0% | |
| CTTGTGAAGGCCACGTCATC+AGG | + | chr1.3:11109465-11109484 | MS.gene059481:intron | 55.0% | |
| GTGGGTCCTTGTGAAAGAGG+TGG | + | chr1.3:11110664-11110683 | MS.gene059481:intron | 55.0% | |
| TGGTGGAGTTCTTGGGAGTG+AGG | - | chr1.3:11111213-11111232 | None:intergenic | 55.0% | |
| GGTGGTCGGGGTTTGAACTC+CGG | - | chr1.3:11109810-11109829 | None:intergenic | 60.0% | |
| !! | GGTGTCGGCGATGTTTGCTC+TGG | + | chr1.3:11108634-11108653 | MS.gene059481:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 11108460 | 11113273 | 11108460 | ID=MS.gene059481 |
| chr1.3 | mRNA | 11108460 | 11113273 | 11108460 | ID=MS.gene059481.t1;Parent=MS.gene059481 |
| chr1.3 | exon | 11108460 | 11108690 | 11108460 | ID=MS.gene059481.t1.exon1;Parent=MS.gene059481.t1 |
| chr1.3 | CDS | 11108460 | 11108690 | 11108460 | ID=cds.MS.gene059481.t1;Parent=MS.gene059481.t1 |
| chr1.3 | exon | 11111145 | 11111274 | 11111145 | ID=MS.gene059481.t1.exon2;Parent=MS.gene059481.t1 |
| chr1.3 | CDS | 11111145 | 11111274 | 11111145 | ID=cds.MS.gene059481.t1;Parent=MS.gene059481.t1 |
| chr1.3 | exon | 11112071 | 11112233 | 11112071 | ID=MS.gene059481.t1.exon3;Parent=MS.gene059481.t1 |
| chr1.3 | CDS | 11112071 | 11112233 | 11112071 | ID=cds.MS.gene059481.t1;Parent=MS.gene059481.t1 |
| chr1.3 | exon | 11112938 | 11113013 | 11112938 | ID=MS.gene059481.t1.exon4;Parent=MS.gene059481.t1 |
| chr1.3 | CDS | 11112938 | 11113013 | 11112938 | ID=cds.MS.gene059481.t1;Parent=MS.gene059481.t1 |
| chr1.3 | exon | 11113148 | 11113273 | 11113148 | ID=MS.gene059481.t1.exon5;Parent=MS.gene059481.t1 |
| chr1.3 | CDS | 11113148 | 11113273 | 11113148 | ID=cds.MS.gene059481.t1;Parent=MS.gene059481.t1 |
| Gene Sequence |
| Protein sequence |
