Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059500.t1 | XP_003607899.1 | 90.2 | 388 | 16 | 2 | 1 | 366 | 94 | 481 | 9.70E-199 | 702.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059500.t1 | Q6DBG8 | 66.0 | 385 | 110 | 5 | 1 | 365 | 62 | 445 | 7.9e-149 | 528.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059500.t1 | G7JJY6 | 90.2 | 388 | 16 | 2 | 1 | 366 | 94 | 481 | 7.0e-199 | 702.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059500 | MS.gene059503 | 0.827103 | 1.88E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059500.t1 | MTR_4g084200 | 89.948 | 388 | 17 | 2 | 1 | 366 | 94 | 481 | 0.0 | 719 |
| MS.gene059500.t1 | MTR_4g084200 | 88.520 | 331 | 16 | 2 | 1 | 309 | 94 | 424 | 0.0 | 599 |
| MS.gene059500.t1 | MTR_4g084200 | 88.485 | 330 | 16 | 2 | 1 | 308 | 94 | 423 | 0.0 | 597 |
| MS.gene059500.t1 | MTR_8g080490 | 40.957 | 376 | 181 | 9 | 1 | 346 | 51 | 415 | 2.44e-83 | 259 |
| MS.gene059500.t1 | MTR_6g027310 | 39.788 | 377 | 197 | 9 | 1 | 351 | 115 | 487 | 8.92e-79 | 250 |
| MS.gene059500.t1 | MTR_7g087100 | 40.054 | 372 | 197 | 8 | 1 | 347 | 118 | 488 | 2.28e-76 | 244 |
| MS.gene059500.t1 | MTR_4g077920 | 38.120 | 383 | 204 | 8 | 1 | 357 | 114 | 489 | 2.79e-75 | 241 |
| MS.gene059500.t1 | MTR_1g097090 | 35.142 | 424 | 205 | 11 | 1 | 358 | 57 | 476 | 2.38e-74 | 238 |
| MS.gene059500.t1 | MTR_3g085480 | 39.005 | 382 | 191 | 9 | 1 | 352 | 52 | 421 | 2.74e-74 | 236 |
| MS.gene059500.t1 | MTR_3g037720 | 38.275 | 371 | 202 | 8 | 1 | 345 | 117 | 486 | 4.25e-74 | 238 |
| MS.gene059500.t1 | MTR_1g097090 | 35.381 | 407 | 200 | 9 | 1 | 345 | 57 | 462 | 5.47e-74 | 237 |
| MS.gene059500.t1 | MTR_4g077920 | 38.701 | 354 | 185 | 7 | 1 | 329 | 114 | 460 | 3.25e-71 | 229 |
| MS.gene059500.t1 | MTR_4g077920 | 40.146 | 274 | 142 | 4 | 106 | 357 | 158 | 431 | 1.65e-57 | 193 |
| MS.gene059500.t1 | MTR_8g080490 | 37.229 | 231 | 107 | 8 | 1 | 204 | 51 | 270 | 5.56e-30 | 117 |
| MS.gene059500.t1 | MTR_5g031480 | 24.917 | 301 | 177 | 9 | 42 | 318 | 117 | 392 | 1.42e-22 | 98.6 |
| MS.gene059500.t1 | MTR_3g110200 | 27.986 | 293 | 175 | 9 | 62 | 326 | 299 | 583 | 4.31e-21 | 95.1 |
| MS.gene059500.t1 | MTR_3g081240 | 27.899 | 276 | 167 | 11 | 65 | 318 | 158 | 423 | 4.07e-20 | 91.7 |
| MS.gene059500.t1 | MTR_7g103260 | 28.261 | 276 | 162 | 10 | 67 | 318 | 111 | 374 | 6.64e-20 | 90.5 |
| MS.gene059500.t1 | MTR_7g103270 | 28.986 | 276 | 154 | 12 | 70 | 318 | 115 | 375 | 1.54e-19 | 89.7 |
| MS.gene059500.t1 | MTR_3g080690 | 26.523 | 279 | 173 | 11 | 62 | 318 | 153 | 421 | 2.92e-19 | 89.0 |
| MS.gene059500.t1 | MTR_3g110198 | 28.866 | 291 | 159 | 11 | 70 | 326 | 310 | 586 | 3.03e-19 | 89.7 |
| MS.gene059500.t1 | MTR_7g103150 | 27.458 | 295 | 174 | 11 | 62 | 326 | 193 | 477 | 7.32e-19 | 88.2 |
| MS.gene059500.t1 | MTR_3g097310 | 26.027 | 292 | 171 | 11 | 67 | 326 | 205 | 483 | 8.62e-19 | 87.8 |
| MS.gene059500.t1 | MTR_1g061760 | 27.076 | 277 | 165 | 12 | 67 | 318 | 197 | 461 | 7.69e-18 | 85.1 |
| MS.gene059500.t1 | MTR_4g100730 | 27.148 | 291 | 170 | 9 | 70 | 326 | 246 | 528 | 8.97e-17 | 82.0 |
| MS.gene059500.t1 | MTR_4g115460 | 24.080 | 299 | 184 | 10 | 70 | 335 | 176 | 464 | 1.04e-16 | 81.6 |
| MS.gene059500.t1 | MTR_5g049790 | 23.667 | 300 | 166 | 10 | 42 | 318 | 153 | 412 | 1.12e-16 | 81.3 |
| MS.gene059500.t1 | MTR_1g090733 | 26.599 | 297 | 170 | 12 | 62 | 326 | 260 | 540 | 1.62e-16 | 81.3 |
| MS.gene059500.t1 | MTR_8g096140 | 27.362 | 307 | 182 | 14 | 63 | 334 | 89 | 389 | 1.30e-15 | 78.2 |
| MS.gene059500.t1 | MTR_8g096160 | 26.384 | 307 | 185 | 13 | 63 | 334 | 89 | 389 | 1.99e-15 | 77.4 |
| MS.gene059500.t1 | MTR_4g115540 | 23.929 | 280 | 173 | 10 | 67 | 318 | 334 | 601 | 3.34e-15 | 77.4 |
| MS.gene059500.t1 | MTR_1g006600 | 25.926 | 270 | 169 | 10 | 70 | 317 | 303 | 563 | 7.24e-15 | 76.3 |
| MS.gene059500.t1 | MTR_7g085840 | 25.468 | 267 | 167 | 10 | 70 | 318 | 52 | 304 | 1.64e-14 | 73.9 |
| MS.gene059500.t1 | MTR_1g029350 | 27.004 | 237 | 136 | 8 | 67 | 274 | 124 | 352 | 3.71e-14 | 73.9 |
| MS.gene059500.t1 | MTR_4g115530 | 24.373 | 279 | 173 | 10 | 67 | 318 | 46 | 313 | 5.84e-14 | 72.4 |
| MS.gene059500.t1 | MTR_4g115530 | 24.373 | 279 | 173 | 10 | 67 | 318 | 100 | 367 | 6.69e-14 | 72.8 |
| MS.gene059500.t1 | MTR_3g106690 | 25.083 | 303 | 177 | 13 | 67 | 333 | 103 | 391 | 2.49e-13 | 70.9 |
| MS.gene059500.t1 | MTR_8g102840 | 25.170 | 294 | 171 | 12 | 68 | 326 | 323 | 602 | 5.47e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059500.t1 | AT2G35100 | 65.974 | 385 | 110 | 5 | 1 | 365 | 62 | 445 | 0.0 | 540 |
| MS.gene059500.t1 | AT5G44930 | 62.105 | 380 | 120 | 5 | 1 | 363 | 67 | 439 | 2.82e-173 | 490 |
| MS.gene059500.t1 | AT5G44930 | 62.105 | 380 | 120 | 5 | 1 | 363 | 67 | 439 | 2.82e-173 | 490 |
| MS.gene059500.t1 | AT5G44930 | 62.112 | 322 | 101 | 4 | 1 | 308 | 67 | 381 | 4.83e-142 | 408 |
| MS.gene059500.t1 | AT1G67410 | 38.961 | 385 | 190 | 9 | 1 | 352 | 55 | 427 | 3.16e-82 | 257 |
| MS.gene059500.t1 | AT3G45400 | 40.811 | 370 | 194 | 7 | 1 | 345 | 83 | 452 | 2.46e-81 | 256 |
| MS.gene059500.t1 | AT1G74680 | 38.992 | 377 | 193 | 10 | 1 | 345 | 77 | 448 | 2.50e-76 | 243 |
| MS.gene059500.t1 | AT5G16890 | 38.583 | 381 | 205 | 8 | 1 | 357 | 120 | 495 | 4.32e-75 | 241 |
| MS.gene059500.t1 | AT3G03650 | 37.302 | 378 | 205 | 9 | 1 | 349 | 123 | 497 | 3.51e-72 | 233 |
| MS.gene059500.t1 | AT1G34270 | 34.729 | 406 | 203 | 9 | 1 | 345 | 59 | 463 | 5.88e-70 | 227 |
| MS.gene059500.t1 | AT1G67410 | 31.600 | 250 | 131 | 7 | 1 | 220 | 55 | 294 | 7.97e-27 | 108 |
| MS.gene059500.t1 | AT4G38040 | 25.249 | 301 | 176 | 9 | 42 | 318 | 127 | 402 | 1.30e-21 | 95.9 |
| MS.gene059500.t1 | AT4G38040 | 25.850 | 294 | 169 | 9 | 42 | 311 | 127 | 395 | 8.46e-20 | 90.5 |
| MS.gene059500.t1 | AT4G16745 | 26.667 | 330 | 193 | 13 | 70 | 363 | 242 | 558 | 3.54e-19 | 89.4 |
| MS.gene059500.t1 | AT5G11130 | 23.718 | 312 | 193 | 12 | 57 | 335 | 35 | 334 | 4.12e-19 | 87.8 |
| MS.gene059500.t1 | AT5G11130 | 23.718 | 312 | 193 | 12 | 57 | 335 | 179 | 478 | 1.46e-18 | 87.4 |
| MS.gene059500.t1 | AT4G16745 | 27.491 | 291 | 169 | 11 | 70 | 326 | 242 | 524 | 3.96e-18 | 86.3 |
| MS.gene059500.t1 | AT5G03795 | 26.619 | 278 | 164 | 10 | 67 | 318 | 229 | 492 | 2.08e-17 | 84.0 |
| MS.gene059500.t1 | AT4G32790 | 28.090 | 267 | 160 | 9 | 70 | 313 | 309 | 566 | 4.11e-17 | 83.2 |
| MS.gene059500.t1 | AT4G32790 | 28.090 | 267 | 160 | 9 | 70 | 313 | 309 | 566 | 4.11e-17 | 83.2 |
| MS.gene059500.t1 | AT4G32790 | 28.090 | 267 | 160 | 9 | 70 | 313 | 309 | 566 | 4.11e-17 | 83.2 |
| MS.gene059500.t1 | AT5G61840 | 26.073 | 303 | 185 | 11 | 66 | 334 | 91 | 388 | 6.75e-17 | 82.0 |
| MS.gene059500.t1 | AT5G20260 | 25.159 | 314 | 185 | 12 | 57 | 334 | 35 | 334 | 3.03e-16 | 79.3 |
| MS.gene059500.t1 | AT5G20260 | 25.159 | 314 | 185 | 12 | 57 | 334 | 62 | 361 | 3.51e-16 | 79.3 |
| MS.gene059500.t1 | AT5G37000 | 25.685 | 292 | 171 | 12 | 68 | 326 | 266 | 544 | 4.29e-16 | 80.1 |
| MS.gene059500.t1 | AT5G20260 | 25.714 | 315 | 182 | 13 | 57 | 334 | 167 | 466 | 1.07e-15 | 78.6 |
| MS.gene059500.t1 | AT3G07620 | 26.263 | 297 | 179 | 12 | 67 | 333 | 172 | 458 | 1.12e-15 | 78.6 |
| MS.gene059500.t1 | AT5G33290 | 24.643 | 280 | 171 | 9 | 67 | 318 | 208 | 475 | 1.59e-15 | 78.2 |
| MS.gene059500.t1 | AT3G42180 | 25.987 | 304 | 177 | 14 | 67 | 334 | 49 | 340 | 2.75e-15 | 76.6 |
| MS.gene059500.t1 | AT3G42180 | 25.987 | 304 | 177 | 14 | 67 | 334 | 178 | 469 | 3.69e-15 | 77.0 |
| MS.gene059500.t1 | AT1G68470 | 24.915 | 293 | 181 | 8 | 1 | 256 | 73 | 363 | 1.29e-12 | 69.3 |
| MS.gene059500.t1 | AT5G19670 | 23.810 | 294 | 187 | 9 | 62 | 326 | 315 | 600 | 8.62e-12 | 67.0 |
| MS.gene059500.t1 | AT5G19670 | 23.810 | 294 | 187 | 9 | 62 | 326 | 315 | 600 | 8.62e-12 | 67.0 |
Find 93 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATATTCCAAGATTCTTTC+TGG | 0.095632 | 4.3:-27660953 | None:intergenic |
| CGACCTGCTGGTTCGGGTTC+TGG | 0.175471 | 4.3:+27659929 | MS.gene059500:CDS |
| CCCGGTTCGACCTGCTGGTT+CGG | 0.226136 | 4.3:+27659922 | MS.gene059500:CDS |
| AACTCCGTAGGTAAACCTTT+TGG | 0.262572 | 4.3:-27659672 | None:intergenic |
| GTTCCGGTTCGCCTGTTGTT+AGG | 0.264069 | 4.3:+27659831 | MS.gene059500:CDS |
| GGCTGGAGATGCAGGAGTTT+TGG | 0.264597 | 4.3:+27660004 | MS.gene059500:CDS |
| GTTCTTATCCGATGCGAATA+TGG | 0.296085 | 4.3:-27660179 | None:intergenic |
| CCGGTTCGACCTGCTGGTTC+GGG | 0.341895 | 4.3:+27659923 | MS.gene059500:CDS |
| GATATTCCAAGATTCTTTCT+GGG | 0.343275 | 4.3:-27660952 | None:intergenic |
| CCCGAACCAGCAGGTCGAAC+CGG | 0.354474 | 4.3:-27659923 | None:intergenic |
| TGCTGCCCGTCTACTTTCTC+TGG | 0.355908 | 4.3:-27660702 | None:intergenic |
| TGGAAGGTTGAGACCTGATC+AGG | 0.357605 | 4.3:+27660130 | MS.gene059500:intron |
| TAGAAAGATTGCTGTATTTG+TGG | 0.375791 | 4.3:+27660874 | MS.gene059500:CDS |
| GGATCTATCTCGACCCGATT+CGG | 0.386569 | 4.3:+27659805 | MS.gene059500:CDS |
| TTCCGGTTCGCCTGTTGTTA+GGG | 0.388387 | 4.3:+27659832 | MS.gene059500:CDS |
| ATGGGACAGTGAATGAGATT+TGG | 0.417663 | 4.3:+27662825 | MS.gene059500:CDS |
| ATCTCATTCACTGTCCCATC+TGG | 0.420625 | 4.3:-27662821 | None:intergenic |
| AATGTACCGGGTTGTTGATC+GGG | 0.425272 | 4.3:+27660077 | MS.gene059500:CDS |
| TTTGGAAGAGGAGCAAAGGA+AGG | 0.428192 | 4.3:+27660022 | MS.gene059500:CDS |
| CGACCCGATTCGGAACGTTC+CGG | 0.433338 | 4.3:+27659815 | MS.gene059500:CDS |
| GAACCGGAACGTTCCGAATC+GGG | 0.433630 | 4.3:-27659818 | None:intergenic |
| TAATGAGTGGCTGGAGATGC+AGG | 0.434465 | 4.3:+27659996 | MS.gene059500:CDS |
| AACCCTAACAACAGGCGAAC+CGG | 0.444457 | 4.3:-27659834 | None:intergenic |
| TTTACAGGGAGGGAAAATTC+GGG | 0.448142 | 4.3:+27660619 | MS.gene059500:intron |
| GCGTGGCTCACGCGCTAATA+CGG | 0.448913 | 4.3:+27659715 | MS.gene059500:CDS |
| GTGAGCCACGCGCGAGGGAA+TGG | 0.451715 | 4.3:-27659703 | None:intergenic |
| AAGTTCTGCTTACATCCTGC+TGG | 0.454835 | 4.3:+27660746 | MS.gene059500:CDS |
| GTGAACCCGGTTCGACCTGC+TGG | 0.456916 | 4.3:+27659917 | MS.gene059500:CDS |
| TTCACCAATGATCCCTGATC+AGG | 0.463538 | 4.3:-27660143 | None:intergenic |
| CTCCGACATATGTTGATGAC+CGG | 0.463928 | 4.3:-27659768 | None:intergenic |
| CAATGTACCGGGTTGTTGAT+CGG | 0.465245 | 4.3:+27660076 | MS.gene059500:CDS |
| GTACATACGCAAGAGCAATC+AGG | 0.476526 | 4.3:-27662920 | None:intergenic |
| ATAAAGTTCCAATGGCAGTC+TGG | 0.477423 | 4.3:-27662946 | None:intergenic |
| GAGACCTGATCAGGGATCAT+TGG | 0.481383 | 4.3:+27660139 | MS.gene059500:intron |
| CATGACCCCAGAAAGAATCT+TGG | 0.482919 | 4.3:+27660946 | MS.gene059500:CDS |
| GTTAATCATCAACTTGATCA+AGG | 0.483475 | 4.3:-27662870 | None:intergenic |
| CGAACCGGAACGTTCCGAAT+CGG | 0.483799 | 4.3:-27659819 | None:intergenic |
| TGATGATTAACCGCGAGAAA+CGG | 0.489158 | 4.3:+27662882 | MS.gene059500:CDS |
| GGATCTGAAACCCTAACAAC+AGG | 0.491210 | 4.3:-27659842 | None:intergenic |
| ACCTCTACGATCTTCCCAAA+AGG | 0.495730 | 4.3:+27659657 | MS.gene059500:CDS |
| AAAATTGACAACAAATATCC+TGG | 0.498318 | 4.3:-27660917 | None:intergenic |
| ACGCGCTAATACGGATGAAA+AGG | 0.498494 | 4.3:+27659724 | MS.gene059500:CDS |
| GATAGTCAGCTTGTGTGTTC+CGG | 0.510208 | 4.3:+27660802 | MS.gene059500:CDS |
| TGTACAAACCAGACTGCCAT+TGG | 0.511927 | 4.3:+27662938 | MS.gene059500:CDS |
| ACAACCCGGTACATTGCATT+CGG | 0.520218 | 4.3:-27660069 | None:intergenic |
| AGGAAGCATTAATGAGTGGC+TGG | 0.522485 | 4.3:+27659987 | MS.gene059500:CDS |
| CCGAACCAGCAGGTCGAACC+GGG | 0.525133 | 4.3:-27659922 | None:intergenic |
| TAGTCTATAGTATCTTCAAA+AGG | 0.528476 | 4.3:-27660851 | None:intergenic |
| CGGATCCGAATGCAATGTAC+CGG | 0.532412 | 4.3:+27660064 | MS.gene059500:CDS |
| AGTTCTGCTTACATCCTGCT+GGG | 0.532501 | 4.3:+27660747 | MS.gene059500:CDS |
| GTTGAGTTTGATTGTGAACC+CGG | 0.532641 | 4.3:+27659904 | MS.gene059500:CDS |
| GGATCATGTGATTGTTGCGT+CGG | 0.547922 | 4.3:+27660044 | MS.gene059500:CDS |
| TTATGATGGTGGTGTTGGTG+TGG | 0.557745 | 4.3:+27660202 | MS.gene059500:CDS |
| AGAACTTATGATGGTGGTGT+TGG | 0.560529 | 4.3:+27660197 | MS.gene059500:CDS |
| CACAATCCAGAGAAAGTAGA+CGG | 0.560560 | 4.3:+27660696 | MS.gene059500:CDS |
| GAACCAGAACCCGAACCAGC+AGG | 0.563283 | 4.3:-27659932 | None:intergenic |
| TTCTTACCCGATCAACAACC+CGG | 0.566188 | 4.3:-27660083 | None:intergenic |
| AGCGCGTGAGCCACGCGCGA+GGG | 0.566772 | 4.3:-27659708 | None:intergenic |
| TTGTAAACAGCCGTTTCTCG+CGG | 0.567847 | 4.3:-27662892 | None:intergenic |
| TTTGAATATGATGAACCAGA+TGG | 0.569819 | 4.3:+27662806 | MS.gene059500:CDS |
| ATATTCCAAGATTCTTTCTG+GGG | 0.572068 | 4.3:-27660951 | None:intergenic |
| GATGATGTTATAATAAAGCA+TGG | 0.572770 | 4.3:+27660671 | MS.gene059500:CDS |
| ATGCTATCACTGACAATCAC+CGG | 0.573180 | 4.3:-27660821 | None:intergenic |
| TAGCGCGTGAGCCACGCGCG+AGG | 0.575519 | 4.3:-27659709 | None:intergenic |
| ATATCAGAAAGAACTAAAAG+AGG | 0.578531 | 4.3:+27660970 | MS.gene059500:CDS |
| TTGGAAGAGGAGCAAAGGAA+GGG | 0.578834 | 4.3:+27660023 | MS.gene059500:CDS |
| TCAAACAATCGACAGGCTGA+TGG | 0.585845 | 4.3:-27660776 | None:intergenic |
| CGAGAAACGGCTGTTTACAA+AGG | 0.586538 | 4.3:+27662895 | MS.gene059500:CDS |
| GCTGATGGAGTATCCCCAGC+AGG | 0.587369 | 4.3:-27660761 | None:intergenic |
| ACTGCTGCTGCTATACAGCC+AGG | 0.587396 | 4.3:+27660899 | MS.gene059500:CDS |
| CATCGGATAAGAACTTATGA+TGG | 0.588060 | 4.3:+27660188 | MS.gene059500:CDS |
| TCCGACATATGTTGATGACC+GGG | 0.588232 | 4.3:-27659767 | None:intergenic |
| TATCGCATCAAACAATCGAC+AGG | 0.588955 | 4.3:-27660783 | None:intergenic |
| AGCCACGCGCGAGGGAATGG+TGG | 0.591921 | 4.3:-27659700 | None:intergenic |
| CTTCCCAAAAGGTTTACCTA+CGG | 0.599873 | 4.3:+27659668 | MS.gene059500:CDS |
| GGGAAATCGATATCGTAAAG+AGG | 0.602413 | 4.3:+27660253 | MS.gene059500:CDS |
| GGAAGGTTGAGACCTGATCA+GGG | 0.605555 | 4.3:+27660131 | MS.gene059500:intron |
| AGTAGACGGGCAGCATCACA+AGG | 0.605566 | 4.3:+27660710 | MS.gene059500:CDS |
| GTAACGTCGTTGAAGTATCC+CGG | 0.605766 | 4.3:+27659749 | MS.gene059500:CDS |
| TAAGTGCTATAAAGTTCCAA+TGG | 0.607228 | 4.3:-27662954 | None:intergenic |
| TCCCGGTCATCAACATATGT+CGG | 0.609793 | 4.3:+27659766 | MS.gene059500:CDS |
| CACCACCATTCCCTCGCGCG+TGG | 0.614753 | 4.3:+27659698 | MS.gene059500:CDS |
| ACAATCCAGAGAAAGTAGAC+GGG | 0.615542 | 4.3:+27660697 | MS.gene059500:CDS |
| TGATCAGGGATCATTGGTGA+AGG | 0.616737 | 4.3:+27660145 | MS.gene059500:CDS |
| TTGAATATGATGAACCAGAT+GGG | 0.618336 | 4.3:+27662807 | MS.gene059500:CDS |
| TTAATCATCAACTTGATCAA+GGG | 0.621078 | 4.3:-27662869 | None:intergenic |
| CGGATAAGAACTTATGATGG+TGG | 0.628612 | 4.3:+27660191 | MS.gene059500:CDS |
| TGATTGTGCCATATTCGCAT+CGG | 0.634707 | 4.3:+27660171 | MS.gene059500:CDS |
| GGATCCGAATGCAATGTACC+GGG | 0.639285 | 4.3:+27660065 | MS.gene059500:CDS |
| GTTCTGCTTACATCCTGCTG+GGG | 0.660414 | 4.3:+27660748 | MS.gene059500:CDS |
| ATGGTGGTGAATAACTCCGT+AGG | 0.665645 | 4.3:-27659684 | None:intergenic |
| GTCATCAACATATGTCGGAG+TGG | 0.674142 | 4.3:+27659771 | MS.gene059500:CDS |
| AATCAGGAAGCATTAATGAG+TGG | 0.676046 | 4.3:+27659983 | MS.gene059500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTAAAAAATGCAATA+GGG | - | chr4.3:27661070-27661089 | None:intergenic | 10.0% |
| !!! | TATTTTTTAAAAAATGCAAT+AGG | - | chr4.3:27661071-27661090 | None:intergenic | 10.0% |
| !!! | TTTCTTACTTTTTTTTATTA+GGG | + | chr4.3:27662436-27662455 | MS.gene059500:intron | 10.0% |
| !!! | TTTTCTTACTTTTTTTTATT+AGG | + | chr4.3:27662435-27662454 | MS.gene059500:intron | 10.0% |
| !!! | TTTTGATTATTTAATATATC+TGG | + | chr4.3:27662765-27662784 | MS.gene059500:intron | 10.0% |
| !!! | TTTTTTAAAAAATAATCTCT+TGG | + | chr4.3:27661077-27661096 | MS.gene059500:intron | 10.0% |
| !! | AAAATTGGTTAAGATATATT+TGG | + | chr4.3:27660361-27660380 | MS.gene059500:intron | 15.0% |
| !!! | ATTTTGAATAAAATTGATTC+TGG | - | chr4.3:27661500-27661519 | None:intergenic | 15.0% |
| !!! | TTCTTACTTTTTTTTATTAG+GGG | + | chr4.3:27662437-27662456 | MS.gene059500:intron | 15.0% |
| !!! | TTTTTTAAAAAATGCAATAG+GGG | - | chr4.3:27661069-27661088 | None:intergenic | 15.0% |
| !! | AACAAAAAGCAATAAACTAA+CGG | + | chr4.3:27662102-27662121 | MS.gene059500:intron | 20.0% |
| !! | ATCAAGTACTTAATTCTAAA+TGG | - | chr4.3:27662158-27662177 | None:intergenic | 20.0% |
| !!! | AAAGTGGATTTAACAATTTA+AGG | - | chr4.3:27661427-27661446 | None:intergenic | 20.0% |
| !!! | AATTATAACCCACTTATTTT+TGG | - | chr4.3:27661911-27661930 | None:intergenic | 20.0% |
| !!! | ACCAAAATTGATTCTAAAAT+TGG | + | chr4.3:27661281-27661300 | MS.gene059500:intron | 20.0% |
| !!! | ACCAATTTTAGAATCAATTT+TGG | - | chr4.3:27661285-27661304 | None:intergenic | 20.0% |
| !!! | AGAATTGATTTTATCATGTT+TGG | + | chr4.3:27661305-27661324 | MS.gene059500:intron | 20.0% |
| !!! | ATTATAACCCACTTATTTTT+GGG | - | chr4.3:27661910-27661929 | None:intergenic | 20.0% |
| !!! | GAATTGATTTTATCATGTTT+GGG | + | chr4.3:27661306-27661325 | MS.gene059500:intron | 20.0% |
| !!! | GAATTTGAAACACTTTTTAT+TGG | - | chr4.3:27661155-27661174 | None:intergenic | 20.0% |
| !!! | GCTTTTGATTCTAATTATTT+TGG | + | chr4.3:27660446-27660465 | MS.gene059500:intron | 20.0% |
| !!! | TATTTAATATATCTGGTTTC+AGG | + | chr4.3:27662772-27662791 | MS.gene059500:intron | 20.0% |
| !!! | TCAAATAGAATCAATTTTGT+AGG | - | chr4.3:27660412-27660431 | None:intergenic | 20.0% |
| !!! | TTTATGTTTGGTTTCAATTT+TGG | + | chr4.3:27661254-27661273 | MS.gene059500:intron | 20.0% |
| !!! | TTTTTAAAAAATGCAATAGG+GGG | - | chr4.3:27661068-27661087 | None:intergenic | 20.0% |
| ! | AAAATTGACAACAAATATCC+TGG | - | chr4.3:27660920-27660939 | None:intergenic | 25.0% |
| ! | AAACTCAACGATGAAAAAAA+AGG | - | chr4.3:27659893-27659912 | None:intergenic | 25.0% |
| ! | ACCAAAATTTCGAAAAAAAG+AGG | - | chr4.3:27660297-27660316 | None:intergenic | 25.0% |
| ! | ACTTCTGCAATAAAATCTAT+CGG | + | chr4.3:27661017-27661036 | MS.gene059500:intron | 25.0% |
| ! | ATATCAGAAAGAACTAAAAG+AGG | + | chr4.3:27660970-27660989 | MS.gene059500:CDS | 25.0% |
| ! | ATGAAGGCTAAAAACTTAAA+AGG | - | chr4.3:27661189-27661208 | None:intergenic | 25.0% |
| ! | ATTTCCCATAAAAAACAACA+AGG | - | chr4.3:27660240-27660259 | None:intergenic | 25.0% |
| ! | GACTTTATTAAGTAGTTAGA+AGG | + | chr4.3:27662311-27662330 | MS.gene059500:intron | 25.0% |
| ! | GATGATGTTATAATAAAGCA+TGG | + | chr4.3:27660671-27660690 | MS.gene059500:CDS | 25.0% |
| ! | TAGTCTATAGTATCTTCAAA+AGG | - | chr4.3:27660854-27660873 | None:intergenic | 25.0% |
| ! | TATGATAGCATGAACAAAAT+TGG | + | chr4.3:27661104-27661123 | MS.gene059500:intron | 25.0% |
| ! | TGGATGTATTTATGTAAAAG+TGG | - | chr4.3:27661443-27661462 | None:intergenic | 25.0% |
| ! | TGTTAATCAACATTTAATCC+TGG | + | chr4.3:27662513-27662532 | MS.gene059500:intron | 25.0% |
| ! | TTAATCATCAACTTGATCAA+GGG | - | chr4.3:27662872-27662891 | None:intergenic | 25.0% |
| !! | AATTGATTCTATTTGAAGCT+AGG | + | chr4.3:27660416-27660435 | MS.gene059500:intron | 25.0% |
| !! | AGCAATTGAGAATGATATTT+TGG | + | chr4.3:27662229-27662248 | MS.gene059500:intron | 25.0% |
| !! | ATATGATTAGCATTGAGAAA+AGG | + | chr4.3:27662186-27662205 | MS.gene059500:intron | 25.0% |
| !! | TAAATGTTGATTAACAACCA+GGG | - | chr4.3:27662509-27662528 | None:intergenic | 25.0% |
| !! | TTAAATGTTGATTAACAACC+AGG | - | chr4.3:27662510-27662529 | None:intergenic | 25.0% |
| !! | TTTTTATCTGCACATTCATT+GGG | - | chr4.3:27661965-27661984 | None:intergenic | 25.0% |
| !!! | AACACCTTGTTGTTTTTTAT+GGG | + | chr4.3:27660233-27660252 | MS.gene059500:CDS | 25.0% |
| !!! | ACGATTTCTAATTCTAAAAC+AGG | + | chr4.3:27662712-27662731 | MS.gene059500:intron | 25.0% |
| !!! | ACGCGTTTTATTTTTACTAA+TGG | + | chr4.3:27660559-27660578 | MS.gene059500:intron | 25.0% |
| !!! | ACTTTTTATTGGCTATAAGT+AGG | - | chr4.3:27661144-27661163 | None:intergenic | 25.0% |
| !!! | AGGGTAGTTTTTTTGAAATT+TGG | - | chr4.3:27662853-27662872 | None:intergenic | 25.0% |
| !!! | CGATTTCTAATTCTAAAACA+GGG | + | chr4.3:27662713-27662732 | MS.gene059500:intron | 25.0% |
| !!! | GTTTAGCTTTAGTTTATGTT+TGG | + | chr4.3:27661242-27661261 | MS.gene059500:intron | 25.0% |
| !!! | TATTTGTTGTCAATTTTGAG+AGG | + | chr4.3:27660923-27660942 | MS.gene059500:CDS | 25.0% |
| !!! | TCCTCTTTTTTTCGAAATTT+TGG | + | chr4.3:27660293-27660312 | MS.gene059500:intron | 25.0% |
| !!! | TGTTTCAAAAAAGTGTTAGA+AGG | + | chr4.3:27662286-27662305 | MS.gene059500:intron | 25.0% |
| !!! | TTTTTTATCTGCACATTCAT+TGG | - | chr4.3:27661966-27661985 | None:intergenic | 25.0% |
| AAAAACAAATCAGCTTCTTC+TGG | - | chr4.3:27659866-27659885 | None:intergenic | 30.0% | |
| AAAATAAAACGCGTGTATGT+TGG | - | chr4.3:27660553-27660572 | None:intergenic | 30.0% | |
| AACATTTAATCCTGGTATCA+TGG | + | chr4.3:27662521-27662540 | MS.gene059500:intron | 30.0% | |
| AAGGCTAAAAACTTAAAAGG+AGG | - | chr4.3:27661186-27661205 | None:intergenic | 30.0% | |
| ACTTATGCTATGCATTTAGT+AGG | - | chr4.3:27661724-27661743 | None:intergenic | 30.0% | |
| AGGCTAAAAACTTAAAAGGA+GGG | - | chr4.3:27661185-27661204 | None:intergenic | 30.0% | |
| ATAACTAAGTTTGAGCAAGT+AGG | - | chr4.3:27662612-27662631 | None:intergenic | 30.0% | |
| ATATTCCAAGATTCTTTCTG+GGG | - | chr4.3:27660954-27660973 | None:intergenic | 30.0% | |
| ATCATAATGTCAATCTTGCT+TGG | - | chr4.3:27661765-27661784 | None:intergenic | 30.0% | |
| ATGAACAAAATTGGTTGACA+TGG | + | chr4.3:27661113-27661132 | MS.gene059500:intron | 30.0% | |
| ATGTGTCAATTAATTGCACT+GGG | - | chr4.3:27662033-27662052 | None:intergenic | 30.0% | |
| CTTAATAGTGACCTTGAATT+GGG | + | chr4.3:27661799-27661818 | MS.gene059500:intron | 30.0% | |
| CTTATGCTATGCATTTAGTA+GGG | - | chr4.3:27661723-27661742 | None:intergenic | 30.0% | |
| GATATTCCAAGATTCTTTCT+GGG | - | chr4.3:27660955-27660974 | None:intergenic | 30.0% | |
| GATGTAAAGTGATTTATGCT+TGG | - | chr4.3:27661463-27661482 | None:intergenic | 30.0% | |
| GGTGATGATTAGTATGAATT+GGG | + | chr4.3:27660314-27660333 | MS.gene059500:intron | 30.0% | |
| GTGATGATTAGTATGAATTG+GGG | + | chr4.3:27660315-27660334 | MS.gene059500:intron | 30.0% | |
| GTTAATCATCAACTTGATCA+AGG | - | chr4.3:27662873-27662892 | None:intergenic | 30.0% | |
| TAGAAAGATTGCTGTATTTG+TGG | + | chr4.3:27660874-27660893 | MS.gene059500:CDS | 30.0% | |
| TCAAGGTCACTATTAAGATT+TGG | - | chr4.3:27661796-27661815 | None:intergenic | 30.0% | |
| TCAATTACCAAGTGTTTGTT+TGG | - | chr4.3:27661543-27661562 | None:intergenic | 30.0% | |
| TCTTAATAGTGACCTTGAAT+TGG | + | chr4.3:27661798-27661817 | MS.gene059500:intron | 30.0% | |
| TGATATTCCAAGATTCTTTC+TGG | - | chr4.3:27660956-27660975 | None:intergenic | 30.0% | |
| TGATGATTAGTATGAATTGG+GGG | + | chr4.3:27660316-27660335 | MS.gene059500:intron | 30.0% | |
| TTACTACTTGTACAGATACA+AGG | - | chr4.3:27662575-27662594 | None:intergenic | 30.0% | |
| TTATGCTATGCATTTAGTAG+GGG | - | chr4.3:27661722-27661741 | None:intergenic | 30.0% | |
| TTGAATATGATGAACCAGAT+GGG | + | chr4.3:27662807-27662826 | MS.gene059500:CDS | 30.0% | |
| TTGGGATGATTTAAACTTCA+AGG | + | chr4.3:27661324-27661343 | MS.gene059500:intron | 30.0% | |
| TTTCCTGTATGTTGTTAACA+GGG | + | chr4.3:27661857-27661876 | MS.gene059500:intron | 30.0% | |
| TTTGAATATGATGAACCAGA+TGG | + | chr4.3:27662806-27662825 | MS.gene059500:CDS | 30.0% | |
| ! | ACCACAGTTTTTGTATATGA+AGG | - | chr4.3:27661205-27661224 | None:intergenic | 30.0% |
| ! | CGTTTCTAAAGATTATAGCA+GGG | + | chr4.3:27662463-27662482 | MS.gene059500:intron | 30.0% |
| ! | GGGAAAGTGATATATGTTTT+TGG | - | chr4.3:27660513-27660532 | None:intergenic | 30.0% |
| ! | TCGTTTCTAAAGATTATAGC+AGG | + | chr4.3:27662462-27662481 | MS.gene059500:intron | 30.0% |
| ! | TGCTATAATCTTTAGAAACG+AGG | - | chr4.3:27662463-27662482 | None:intergenic | 30.0% |
| ! | TGGTGATGATTAGTATGAAT+TGG | + | chr4.3:27660313-27660332 | MS.gene059500:intron | 30.0% |
| ! | TGTAGAATTGATTCTACTTG+AGG | + | chr4.3:27661362-27661381 | MS.gene059500:intron | 30.0% |
| !! | ATGTTTGGTTTCAATTTTGG+AGG | + | chr4.3:27661257-27661276 | MS.gene059500:intron | 30.0% |
| !! | GCTTTTTGTTGCTTCTTTAT+AGG | - | chr4.3:27662092-27662111 | None:intergenic | 30.0% |
| !! | TGTTTGGTTTCAATTTTGGA+GGG | + | chr4.3:27661258-27661277 | MS.gene059500:intron | 30.0% |
| !! | TTGATTCTGGAGTGTAAAAT+TGG | + | chr4.3:27660346-27660365 | MS.gene059500:intron | 30.0% |
| !!! | CAACACCTTGTTGTTTTTTA+TGG | + | chr4.3:27660232-27660251 | MS.gene059500:CDS | 30.0% |
| ATTGCAAATTGCCCAATTCA+AGG | - | chr4.3:27661813-27661832 | None:intergenic | 35.0% | |
| CATCGGATAAGAACTTATGA+TGG | + | chr4.3:27660188-27660207 | MS.gene059500:CDS | 35.0% | |
| CATGTGTCAATTAATTGCAC+TGG | - | chr4.3:27662034-27662053 | None:intergenic | 35.0% | |
| CTTTCCTGTATGTTGTTAAC+AGG | + | chr4.3:27661856-27661875 | MS.gene059500:intron | 35.0% | |
| GATTCTGGATAAGAGTAGAT+TGG | - | chr4.3:27661485-27661504 | None:intergenic | 35.0% | |
| GCCTTCATATACAAAAACTG+TGG | + | chr4.3:27661201-27661220 | MS.gene059500:intron | 35.0% | |
| TTGAATTGGGCAATTTGCAA+TGG | + | chr4.3:27661812-27661831 | MS.gene059500:intron | 35.0% | |
| ! | AGCATTGAGAAAAGGCTAAA+TGG | + | chr4.3:27662194-27662213 | MS.gene059500:intron | 35.0% |
| ! | CAATTTGTTTATGTCATCGC+TGG | + | chr4.3:27660595-27660614 | MS.gene059500:intron | 35.0% |
| ! | GAACTGTGTTTTGCTTGTTT+CGG | + | chr4.3:27660103-27660122 | MS.gene059500:intron | 35.0% |
| ! | GTTTTGCTTGTTTCGGATTT+TGG | + | chr4.3:27660110-27660129 | MS.gene059500:intron | 35.0% |
| ! | TTTTACAGGGAGGGAAAATT+CGG | + | chr4.3:27660618-27660637 | MS.gene059500:intron | 35.0% |
| !! | AATCAGGAAGCATTAATGAG+TGG | + | chr4.3:27659983-27660002 | MS.gene059500:CDS | 35.0% |
| !! | CAAAAACTGTGGTATTGATG+AGG | + | chr4.3:27661212-27661231 | MS.gene059500:intron | 35.0% |
| ACAATCCAGAGAAAGTAGAC+GGG | + | chr4.3:27660697-27660716 | MS.gene059500:CDS | 40.0% | |
| ATAAAGTTCCAATGGCAGTC+TGG | - | chr4.3:27662949-27662968 | None:intergenic | 40.0% | |
| ATGCTATCACTGACAATCAC+CGG | - | chr4.3:27660824-27660843 | None:intergenic | 40.0% | |
| ATGGGACAGTGAATGAGATT+TGG | + | chr4.3:27662825-27662844 | MS.gene059500:CDS | 40.0% | |
| CACAATCCAGAGAAAGTAGA+CGG | + | chr4.3:27660696-27660715 | MS.gene059500:CDS | 40.0% | |
| CGGATAAGAACTTATGATGG+TGG | + | chr4.3:27660191-27660210 | MS.gene059500:CDS | 40.0% | |
| CTTCCCAAAAGGTTTACCTA+CGG | + | chr4.3:27659668-27659687 | MS.gene059500:CDS | 40.0% | |
| GAAAAATGCTTACAGCGATG+AGG | + | chr4.3:27659958-27659977 | MS.gene059500:intron | 40.0% | |
| GACACATGATGATTGCATCT+TGG | + | chr4.3:27662046-27662065 | MS.gene059500:intron | 40.0% | |
| GACTGCCATTGGAACTTTAT+AGG | + | chr4.3:27662949-27662968 | MS.gene059500:CDS | 40.0% | |
| GGGAAATCGATATCGTAAAG+AGG | + | chr4.3:27660253-27660272 | MS.gene059500:CDS | 40.0% | |
| GTTCTTATCCGATGCGAATA+TGG | - | chr4.3:27660182-27660201 | None:intergenic | 40.0% | |
| GTTGAGTTTGATTGTGAACC+CGG | + | chr4.3:27659904-27659923 | MS.gene059500:CDS | 40.0% | |
| TATCGCATCAAACAATCGAC+AGG | - | chr4.3:27660786-27660805 | None:intergenic | 40.0% | |
| TCAATTAATTGCACTGGGCT+GGG | - | chr4.3:27662028-27662047 | None:intergenic | 40.0% | |
| TGATGATTAACCGCGAGAAA+CGG | + | chr4.3:27662882-27662901 | MS.gene059500:CDS | 40.0% | |
| TGATTGTGCCATATTCGCAT+CGG | + | chr4.3:27660171-27660190 | MS.gene059500:CDS | 40.0% | |
| TTTACAGGGAGGGAAAATTC+GGG | + | chr4.3:27660619-27660638 | MS.gene059500:intron | 40.0% | |
| ! | AACTCCGTAGGTAAACCTTT+TGG | - | chr4.3:27659675-27659694 | None:intergenic | 40.0% |
| ! | ACTCCGTAGGTAAACCTTTT+GGG | - | chr4.3:27659674-27659693 | None:intergenic | 40.0% |
| ! | CAAGTGTTTGTTTGGTTCAG+CGG | - | chr4.3:27661535-27661554 | None:intergenic | 40.0% |
| ! | TACAAGGAAGCGTAAATGCA+TGG | - | chr4.3:27662559-27662578 | None:intergenic | 40.0% |
| ! | TGCTTGTTTCGGATTTTGGA+AGG | + | chr4.3:27660114-27660133 | MS.gene059500:intron | 40.0% |
| ! | TGGTTCTGCAGTGATTTGAA+GGG | - | chr4.3:27660533-27660552 | None:intergenic | 40.0% |
| !! | AGAACTTATGATGGTGGTGT+TGG | + | chr4.3:27660197-27660216 | MS.gene059500:CDS | 40.0% |
| !! | TTGGTTCTGCAGTGATTTGA+AGG | - | chr4.3:27660534-27660553 | None:intergenic | 40.0% |
| !!! | ATGTCATCGCTGGTTTTACA+GGG | + | chr4.3:27660605-27660624 | MS.gene059500:intron | 40.0% |
| !!! | TATGTCATCGCTGGTTTTAC+AGG | + | chr4.3:27660604-27660623 | MS.gene059500:intron | 40.0% |
| AAGTTCTGCTTACATCCTGC+TGG | + | chr4.3:27660746-27660765 | MS.gene059500:CDS | 45.0% | |
| AATGTACCGGGTTGTTGATC+GGG | + | chr4.3:27660077-27660096 | MS.gene059500:CDS | 45.0% | |
| ACAACCCGGTACATTGCATT+CGG | - | chr4.3:27660072-27660091 | None:intergenic | 45.0% | |
| ACATTCATTGGGCTCTACTG+GGG | - | chr4.3:27661954-27661973 | None:intergenic | 45.0% | |
| ACCTCTACGATCTTCCCAAA+AGG | + | chr4.3:27659657-27659676 | MS.gene059500:CDS | 45.0% | |
| ACGCGCTAATACGGATGAAA+AGG | + | chr4.3:27659724-27659743 | MS.gene059500:CDS | 45.0% | |
| AGTTCTGCTTACATCCTGCT+GGG | + | chr4.3:27660747-27660766 | MS.gene059500:CDS | 45.0% | |
| ATCTCATTCACTGTCCCATC+TGG | - | chr4.3:27662824-27662843 | None:intergenic | 45.0% | |
| CAATGTACCGGGTTGTTGAT+CGG | + | chr4.3:27660076-27660095 | MS.gene059500:CDS | 45.0% | |
| CACAGGGCCCAAAAATAAGT+GGG | + | chr4.3:27661900-27661919 | MS.gene059500:intron | 45.0% | |
| CACATTCATTGGGCTCTACT+GGG | - | chr4.3:27661955-27661974 | None:intergenic | 45.0% | |
| CATGACCCCAGAAAGAATCT+TGG | + | chr4.3:27660946-27660965 | MS.gene059500:CDS | 45.0% | |
| CGAGAAACGGCTGTTTACAA+AGG | + | chr4.3:27662895-27662914 | MS.gene059500:CDS | 45.0% | |
| CGCTGAACCAAACAAACACT+TGG | + | chr4.3:27661533-27661552 | MS.gene059500:intron | 45.0% | |
| CTGTATGTTGTTAACAGGGC+CGG | + | chr4.3:27661861-27661880 | MS.gene059500:intron | 45.0% | |
| GATAGTCAGCTTGTGTGTTC+CGG | + | chr4.3:27660802-27660821 | MS.gene059500:CDS | 45.0% | |
| GGATCATGTGATTGTTGCGT+CGG | + | chr4.3:27660044-27660063 | MS.gene059500:CDS | 45.0% | |
| GTACATACGCAAGAGCAATC+AGG | - | chr4.3:27662923-27662942 | None:intergenic | 45.0% | |
| GTCAATTAATTGCACTGGGC+TGG | - | chr4.3:27662029-27662048 | None:intergenic | 45.0% | |
| GTCATCAACATATGTCGGAG+TGG | + | chr4.3:27659771-27659790 | MS.gene059500:CDS | 45.0% | |
| GTTGCTTCTTTATAGGCCAG+TGG | - | chr4.3:27662085-27662104 | None:intergenic | 45.0% | |
| TCAAACAATCGACAGGCTGA+TGG | - | chr4.3:27660779-27660798 | None:intergenic | 45.0% | |
| TCCATGTACACCATGATACC+AGG | - | chr4.3:27662534-27662553 | None:intergenic | 45.0% | |
| TCCCGGTCATCAACATATGT+CGG | + | chr4.3:27659766-27659785 | MS.gene059500:CDS | 45.0% | |
| TCCTGGTATCATGGTGTACA+TGG | + | chr4.3:27662530-27662549 | MS.gene059500:intron | 45.0% | |
| TGATCAGGGATCATTGGTGA+AGG | + | chr4.3:27660145-27660164 | MS.gene059500:CDS | 45.0% | |
| TGTACAAACCAGACTGCCAT+TGG | + | chr4.3:27662938-27662957 | MS.gene059500:CDS | 45.0% | |
| TTACAGCGATGAGGAGAATC+AGG | + | chr4.3:27659967-27659986 | MS.gene059500:intron | 45.0% | |
| TTAGTAGGGGACTAGAAGCT+TGG | - | chr4.3:27661709-27661728 | None:intergenic | 45.0% | |
| TTCACCAATGATCCCTGATC+AGG | - | chr4.3:27660146-27660165 | None:intergenic | 45.0% | |
| TTCTTACCCGATCAACAACC+CGG | - | chr4.3:27660086-27660105 | None:intergenic | 45.0% | |
| TTGGAAGAGGAGCAAAGGAA+GGG | + | chr4.3:27660023-27660042 | MS.gene059500:CDS | 45.0% | |
| TTGTAAACAGCCGTTTCTCG+CGG | - | chr4.3:27662895-27662914 | None:intergenic | 45.0% | |
| TTTGGAAGAGGAGCAAAGGA+AGG | + | chr4.3:27660022-27660041 | MS.gene059500:CDS | 45.0% | |
| ! | ATGGTGGTGAATAACTCCGT+AGG | - | chr4.3:27659687-27659706 | None:intergenic | 45.0% |
| ! | CTGGGCGTTTGTTAACTACA+AGG | - | chr4.3:27662010-27662029 | None:intergenic | 45.0% |
| ! | GGATCTGAAACCCTAACAAC+AGG | - | chr4.3:27659845-27659864 | None:intergenic | 45.0% |
| ! | GTAACGTCGTTGAAGTATCC+CGG | + | chr4.3:27659749-27659768 | MS.gene059500:CDS | 45.0% |
| ! | TGGGGGAGCAAAATTGATTC+TGG | + | chr4.3:27660333-27660352 | MS.gene059500:intron | 45.0% |
| !! | ACCTTTTGGGAAGATCGTAG+AGG | - | chr4.3:27659661-27659680 | None:intergenic | 45.0% |
| !! | AGGAAGCATTAATGAGTGGC+TGG | + | chr4.3:27659987-27660006 | MS.gene059500:CDS | 45.0% |
| !! | CTCCGACATATGTTGATGAC+CGG | - | chr4.3:27659771-27659790 | None:intergenic | 45.0% |
| !! | GTCGGAGTGGTACTTGTTTT+CGG | + | chr4.3:27659784-27659803 | MS.gene059500:CDS | 45.0% |
| !! | TCCGACATATGTTGATGACC+GGG | - | chr4.3:27659770-27659789 | None:intergenic | 45.0% |
| !! | TTATGATGGTGGTGTTGGTG+TGG | + | chr4.3:27660202-27660221 | MS.gene059500:CDS | 45.0% |
| !!! | AGATGCAGGAGTTTTGGAAG+AGG | + | chr4.3:27660010-27660029 | MS.gene059500:CDS | 45.0% |
| !!! | GAGTTTTGGAAGAGGAGCAA+AGG | + | chr4.3:27660018-27660037 | MS.gene059500:CDS | 45.0% |
| AACCCTAACAACAGGCGAAC+CGG | - | chr4.3:27659837-27659856 | None:intergenic | 50.0% | |
| CCAGGGCTTCTTGAACAATG+AGG | - | chr4.3:27662492-27662511 | None:intergenic | 50.0% | |
| CCTCATTGTTCAAGAAGCCC+TGG | + | chr4.3:27662489-27662508 | MS.gene059500:intron | 50.0% | |
| CGGATCCGAATGCAATGTAC+CGG | + | chr4.3:27660064-27660083 | MS.gene059500:CDS | 50.0% | |
| CGGCCCTGTTAACAACATAC+AGG | - | chr4.3:27661863-27661882 | None:intergenic | 50.0% | |
| GAGACCTGATCAGGGATCAT+TGG | + | chr4.3:27660139-27660158 | MS.gene059500:intron | 50.0% | |
| GCACAGGGCCCAAAAATAAG+TGG | + | chr4.3:27661899-27661918 | MS.gene059500:intron | 50.0% | |
| GCACATTCATTGGGCTCTAC+TGG | - | chr4.3:27661956-27661975 | None:intergenic | 50.0% | |
| GGAAGGTTGAGACCTGATCA+GGG | + | chr4.3:27660131-27660150 | MS.gene059500:intron | 50.0% | |
| GGATCCGAATGCAATGTACC+GGG | + | chr4.3:27660065-27660084 | MS.gene059500:CDS | 50.0% | |
| GGATCTATCTCGACCCGATT+CGG | + | chr4.3:27659805-27659824 | MS.gene059500:CDS | 50.0% | |
| GTTCTGCTTACATCCTGCTG+GGG | + | chr4.3:27660748-27660767 | MS.gene059500:CDS | 50.0% | |
| TAATGAGTGGCTGGAGATGC+AGG | + | chr4.3:27659996-27660015 | MS.gene059500:CDS | 50.0% | |
| TGGAAGGTTGAGACCTGATC+AGG | + | chr4.3:27660130-27660149 | MS.gene059500:intron | 50.0% | |
| ! | TTCCGGTTCGCCTGTTGTTA+GGG | + | chr4.3:27659832-27659851 | MS.gene059500:CDS | 50.0% |
| !!! | CATCGCTGGTTTTACAGGGA+GGG | + | chr4.3:27660609-27660628 | MS.gene059500:intron | 50.0% |
| !!! | TCATCGCTGGTTTTACAGGG+AGG | + | chr4.3:27660608-27660627 | MS.gene059500:intron | 50.0% |
| ACTGCTGCTGCTATACAGCC+AGG | + | chr4.3:27660899-27660918 | MS.gene059500:CDS | 55.0% | |
| AGTAGACGGGCAGCATCACA+AGG | + | chr4.3:27660710-27660729 | MS.gene059500:CDS | 55.0% | |
| CATTGGGCTCTACTGGGGTT+GGG | - | chr4.3:27661949-27661968 | None:intergenic | 55.0% | |
| CGAACCGGAACGTTCCGAAT+CGG | - | chr4.3:27659822-27659841 | None:intergenic | 55.0% | |
| GAACCGGAACGTTCCGAATC+GGG | - | chr4.3:27659821-27659840 | None:intergenic | 55.0% | |
| TCATTGGGCTCTACTGGGGT+TGG | - | chr4.3:27661950-27661969 | None:intergenic | 55.0% | |
| TGCTGCCCGTCTACTTTCTC+TGG | - | chr4.3:27660705-27660724 | None:intergenic | 55.0% | |
| ! | GGCTGGAGATGCAGGAGTTT+TGG | + | chr4.3:27660004-27660023 | MS.gene059500:CDS | 55.0% |
| ! | GTTCCGGTTCGCCTGTTGTT+AGG | + | chr4.3:27659831-27659850 | MS.gene059500:CDS | 55.0% |
| !! | TGCTGGTTCGGGTTCTGGTT+CGG | + | chr4.3:27659934-27659953 | MS.gene059500:intron | 55.0% |
| GAACCAGAACCCGAACCAGC+AGG | - | chr4.3:27659935-27659954 | None:intergenic | 60.0% | |
| GCGTGGCTCACGCGCTAATA+CGG | + | chr4.3:27659715-27659734 | MS.gene059500:CDS | 60.0% | |
| TGGCCACAGCACATCACCAC+TGG | + | chr4.3:27662066-27662085 | MS.gene059500:intron | 60.0% | |
| ! | AGGCCAGTGGTGATGTGCTG+TGG | - | chr4.3:27662072-27662091 | None:intergenic | 60.0% |
| ! | GCTGATGGAGTATCCCCAGC+AGG | - | chr4.3:27660764-27660783 | None:intergenic | 60.0% |
| !! | CGACCCGATTCGGAACGTTC+CGG | + | chr4.3:27659815-27659834 | MS.gene059500:CDS | 60.0% |
| CCCGAACCAGCAGGTCGAAC+CGG | - | chr4.3:27659926-27659945 | None:intergenic | 65.0% | |
| CCGAACCAGCAGGTCGAACC+GGG | - | chr4.3:27659925-27659944 | None:intergenic | 65.0% | |
| TTAACAGGGCCGGCCCTGTG+CGG | + | chr4.3:27661871-27661890 | MS.gene059500:intron | 65.0% | |
| ! | CCCGGTTCGACCTGCTGGTT+CGG | + | chr4.3:27659922-27659941 | MS.gene059500:CDS | 65.0% |
| ! | GTGAACCCGGTTCGACCTGC+TGG | + | chr4.3:27659917-27659936 | MS.gene059500:CDS | 65.0% |
| !! | CCGGTTCGACCTGCTGGTTC+GGG | + | chr4.3:27659923-27659942 | MS.gene059500:CDS | 65.0% |
| !! | CGACCTGCTGGTTCGGGTTC+TGG | + | chr4.3:27659929-27659948 | MS.gene059500:CDS | 65.0% |
| AGCCACGCGCGAGGGAATGG+TGG | - | chr4.3:27659703-27659722 | None:intergenic | 70.0% | |
| CACCACCATTCCCTCGCGCG+TGG | + | chr4.3:27659698-27659717 | MS.gene059500:CDS | 70.0% | |
| CCCTGTGCAGTGCCCGCACA+GGG | - | chr4.3:27661887-27661906 | None:intergenic | 70.0% | |
| GTGAGCCACGCGCGAGGGAA+TGG | - | chr4.3:27659706-27659725 | None:intergenic | 70.0% | |
| TAACAGGGCCGGCCCTGTGC+GGG | + | chr4.3:27661872-27661891 | MS.gene059500:intron | 70.0% | |
| ! | CCCTGTGCGGGCACTGCACA+GGG | + | chr4.3:27661884-27661903 | MS.gene059500:intron | 70.0% |
| AGCGCGTGAGCCACGCGCGA+GGG | - | chr4.3:27659711-27659730 | None:intergenic | 75.0% | |
| GCCCTGTGCAGTGCCCGCAC+AGG | - | chr4.3:27661888-27661907 | None:intergenic | 75.0% | |
| GTGCAGTGCCCGCACAGGGC+CGG | - | chr4.3:27661883-27661902 | None:intergenic | 75.0% | |
| TAGCGCGTGAGCCACGCGCG+AGG | - | chr4.3:27659712-27659731 | None:intergenic | 75.0% | |
| ! | GCCCTGTGCGGGCACTGCAC+AGG | + | chr4.3:27661883-27661902 | MS.gene059500:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 27659653 | 27662970 | 27659653 | ID=MS.gene059500 |
| chr4.3 | mRNA | 27659653 | 27662970 | 27659653 | ID=MS.gene059500.t1;Parent=MS.gene059500 |
| chr4.3 | exon | 27659653 | 27659950 | 27659653 | ID=MS.gene059500.t1.exon1;Parent=MS.gene059500.t1 |
| chr4.3 | CDS | 27659653 | 27659950 | 27659653 | ID=cds.MS.gene059500.t1;Parent=MS.gene059500.t1 |
| chr4.3 | exon | 27659983 | 27660109 | 27659983 | ID=MS.gene059500.t1.exon2;Parent=MS.gene059500.t1 |
| chr4.3 | CDS | 27659983 | 27660109 | 27659983 | ID=cds.MS.gene059500.t1;Parent=MS.gene059500.t1 |
| chr4.3 | exon | 27660142 | 27660274 | 27660142 | ID=MS.gene059500.t1.exon3;Parent=MS.gene059500.t1 |
| chr4.3 | CDS | 27660142 | 27660274 | 27660142 | ID=cds.MS.gene059500.t1;Parent=MS.gene059500.t1 |
| chr4.3 | exon | 27660626 | 27660991 | 27660626 | ID=MS.gene059500.t1.exon4;Parent=MS.gene059500.t1 |
| chr4.3 | CDS | 27660626 | 27660991 | 27660626 | ID=cds.MS.gene059500.t1;Parent=MS.gene059500.t1 |
| chr4.3 | exon | 27662794 | 27662970 | 27662794 | ID=MS.gene059500.t1.exon5;Parent=MS.gene059500.t1 |
| chr4.3 | CDS | 27662794 | 27662970 | 27662794 | ID=cds.MS.gene059500.t1;Parent=MS.gene059500.t1 |
| Gene Sequence |
| Protein sequence |
