Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059503.t1 | ABN04853.1 | 96.9 | 196 | 6 | 0 | 1 | 196 | 1 | 196 | 7.00E-103 | 383.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059503.t1 | Q6DBG8 | 70.9 | 182 | 50 | 1 | 17 | 195 | 264 | 445 | 3.8e-73 | 275.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059503.t1 | A2Q146 | 96.9 | 196 | 6 | 0 | 1 | 196 | 1 | 196 | 5.0e-103 | 383.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05510 | MS.gene059503 | 0.811251 | 7.69E-51 | -1.69E-46 |
| MS.gene059500 | MS.gene059503 | 0.827103 | 1.88E-54 | -1.69E-46 |
| MS.gene059503 | MS.gene49940 | 0.80758 | 4.72E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059503.t1 | MTR_4g084200 | 96.685 | 181 | 6 | 0 | 16 | 196 | 301 | 481 | 5.28e-129 | 371 |
| MS.gene059503.t1 | MTR_4g084200 | 95.968 | 124 | 5 | 0 | 16 | 139 | 301 | 424 | 4.27e-82 | 250 |
| MS.gene059503.t1 | MTR_4g084200 | 95.935 | 123 | 5 | 0 | 16 | 138 | 301 | 423 | 1.90e-81 | 248 |
| MS.gene059503.t1 | MTR_8g080490 | 46.296 | 162 | 84 | 1 | 18 | 176 | 254 | 415 | 1.30e-46 | 158 |
| MS.gene059503.t1 | MTR_3g085480 | 46.154 | 169 | 86 | 2 | 18 | 183 | 256 | 422 | 1.40e-46 | 158 |
| MS.gene059503.t1 | MTR_1g097090 | 42.781 | 187 | 90 | 3 | 16 | 188 | 293 | 476 | 5.73e-46 | 157 |
| MS.gene059503.t1 | MTR_1g097090 | 44.118 | 170 | 85 | 1 | 16 | 175 | 293 | 462 | 7.95e-46 | 157 |
| MS.gene059503.t1 | MTR_7g087100 | 45.732 | 164 | 86 | 1 | 17 | 177 | 325 | 488 | 5.34e-45 | 155 |
| MS.gene059503.t1 | MTR_6g027310 | 45.238 | 168 | 89 | 1 | 17 | 181 | 320 | 487 | 2.36e-44 | 154 |
| MS.gene059503.t1 | MTR_4g077920 | 44.571 | 175 | 93 | 2 | 17 | 187 | 257 | 431 | 5.45e-44 | 152 |
| MS.gene059503.t1 | MTR_3g037720 | 46.296 | 162 | 84 | 1 | 17 | 175 | 325 | 486 | 9.30e-44 | 152 |
| MS.gene059503.t1 | MTR_4g077920 | 44.571 | 175 | 93 | 2 | 17 | 187 | 315 | 489 | 1.57e-43 | 152 |
| MS.gene059503.t1 | MTR_4g077920 | 47.260 | 146 | 74 | 1 | 17 | 159 | 315 | 460 | 1.42e-39 | 140 |
| MS.gene059503.t1 | MTR_5g031480 | 28.358 | 134 | 92 | 2 | 16 | 148 | 262 | 392 | 2.06e-15 | 73.9 |
| MS.gene059503.t1 | MTR_3g081240 | 31.818 | 132 | 83 | 3 | 18 | 148 | 298 | 423 | 2.09e-15 | 73.9 |
| MS.gene059503.t1 | MTR_3g080690 | 29.323 | 133 | 87 | 3 | 17 | 148 | 295 | 421 | 4.16e-14 | 70.1 |
| MS.gene059503.t1 | MTR_4g115460 | 28.481 | 158 | 100 | 4 | 16 | 165 | 312 | 464 | 4.42e-14 | 70.1 |
| MS.gene059503.t1 | MTR_7g103270 | 30.534 | 131 | 86 | 3 | 18 | 148 | 250 | 375 | 4.30e-13 | 67.0 |
| MS.gene059503.t1 | MTR_3g097310 | 27.044 | 159 | 94 | 3 | 5 | 156 | 340 | 483 | 8.97e-13 | 66.2 |
| MS.gene059503.t1 | MTR_3g110200 | 31.579 | 133 | 86 | 3 | 18 | 148 | 440 | 569 | 2.67e-12 | 65.1 |
| MS.gene059503.t1 | MTR_8g096140 | 32.812 | 128 | 78 | 3 | 42 | 164 | 265 | 389 | 2.95e-12 | 64.7 |
| MS.gene059503.t1 | MTR_8g096160 | 31.250 | 128 | 80 | 2 | 42 | 164 | 265 | 389 | 4.57e-12 | 64.3 |
| MS.gene059503.t1 | MTR_3g110198 | 31.293 | 147 | 90 | 3 | 18 | 156 | 443 | 586 | 4.77e-12 | 64.3 |
| MS.gene059503.t1 | MTR_7g103260 | 29.008 | 131 | 88 | 3 | 18 | 148 | 249 | 374 | 1.11e-11 | 63.2 |
| MS.gene059503.t1 | MTR_1g029350 | 36.709 | 79 | 50 | 0 | 26 | 104 | 274 | 352 | 2.32e-11 | 62.0 |
| MS.gene059503.t1 | MTR_4g115530 | 29.008 | 131 | 88 | 3 | 18 | 148 | 188 | 313 | 2.83e-11 | 61.6 |
| MS.gene059503.t1 | MTR_4g115530 | 29.008 | 131 | 88 | 3 | 18 | 148 | 242 | 367 | 3.91e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059503.t1 | AT2G35100 | 70.879 | 182 | 50 | 1 | 17 | 195 | 264 | 445 | 2.64e-96 | 287 |
| MS.gene059503.t1 | AT5G44930 | 66.111 | 180 | 58 | 1 | 17 | 193 | 260 | 439 | 4.48e-87 | 263 |
| MS.gene059503.t1 | AT5G44930 | 66.111 | 180 | 58 | 1 | 17 | 193 | 260 | 439 | 4.48e-87 | 263 |
| MS.gene059503.t1 | AT5G44930 | 68.033 | 122 | 39 | 0 | 17 | 138 | 260 | 381 | 3.96e-56 | 182 |
| MS.gene059503.t1 | AT1G67410 | 47.337 | 169 | 84 | 2 | 18 | 183 | 262 | 428 | 4.18e-50 | 167 |
| MS.gene059503.t1 | AT3G45400 | 48.148 | 162 | 81 | 1 | 17 | 175 | 291 | 452 | 5.67e-48 | 163 |
| MS.gene059503.t1 | AT5G16890 | 46.286 | 175 | 90 | 2 | 17 | 187 | 321 | 495 | 3.86e-43 | 150 |
| MS.gene059503.t1 | AT1G34270 | 41.765 | 170 | 89 | 1 | 16 | 175 | 294 | 463 | 1.50e-42 | 149 |
| MS.gene059503.t1 | AT1G74680 | 46.296 | 162 | 84 | 1 | 17 | 175 | 287 | 448 | 2.15e-42 | 148 |
| MS.gene059503.t1 | AT3G03650 | 42.012 | 169 | 91 | 2 | 17 | 179 | 330 | 497 | 3.97e-41 | 145 |
| MS.gene059503.t1 | AT5G03795 | 30.534 | 131 | 86 | 2 | 18 | 148 | 367 | 492 | 3.63e-14 | 70.5 |
| MS.gene059503.t1 | AT5G11130 | 28.662 | 157 | 97 | 5 | 18 | 165 | 184 | 334 | 6.11e-14 | 69.3 |
| MS.gene059503.t1 | AT5G61840 | 32.031 | 128 | 79 | 2 | 42 | 164 | 264 | 388 | 8.29e-14 | 69.3 |
| MS.gene059503.t1 | AT4G38040 | 27.612 | 134 | 93 | 2 | 16 | 148 | 272 | 402 | 9.28e-14 | 69.3 |
| MS.gene059503.t1 | AT5G11130 | 28.662 | 157 | 97 | 5 | 18 | 165 | 328 | 478 | 9.34e-14 | 69.3 |
| MS.gene059503.t1 | AT4G16745 | 27.273 | 187 | 117 | 5 | 18 | 193 | 380 | 558 | 3.86e-13 | 67.4 |
| MS.gene059503.t1 | AT4G16745 | 29.054 | 148 | 93 | 3 | 18 | 156 | 380 | 524 | 2.65e-12 | 65.1 |
| MS.gene059503.t1 | AT5G20260 | 27.742 | 155 | 99 | 4 | 18 | 164 | 212 | 361 | 2.76e-12 | 64.7 |
| MS.gene059503.t1 | AT5G20260 | 27.742 | 155 | 99 | 4 | 18 | 164 | 185 | 334 | 3.18e-12 | 64.3 |
| MS.gene059503.t1 | AT5G33290 | 30.534 | 131 | 86 | 2 | 18 | 148 | 350 | 475 | 5.03e-12 | 64.3 |
| MS.gene059503.t1 | AT5G20260 | 27.742 | 155 | 99 | 4 | 18 | 164 | 317 | 466 | 5.55e-12 | 63.9 |
| MS.gene059503.t1 | AT4G38040 | 29.134 | 127 | 86 | 2 | 16 | 141 | 272 | 395 | 9.30e-12 | 63.2 |
| MS.gene059503.t1 | AT3G07620 | 29.677 | 155 | 94 | 5 | 18 | 163 | 310 | 458 | 1.01e-11 | 63.2 |
| MS.gene059503.t1 | AT1G27440 | 32.773 | 119 | 72 | 2 | 51 | 164 | 270 | 385 | 2.03e-11 | 62.4 |
| MS.gene059503.t1 | AT5G25310 | 31.933 | 119 | 70 | 3 | 53 | 163 | 364 | 479 | 2.44e-11 | 62.4 |
| MS.gene059503.t1 | AT3G42180 | 29.299 | 157 | 94 | 7 | 18 | 164 | 320 | 469 | 8.73e-11 | 60.5 |
| MS.gene059503.t1 | AT3G42180 | 28.025 | 157 | 96 | 6 | 18 | 164 | 191 | 340 | 9.57e-11 | 60.1 |
Find 37 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATATTCCAAGATTCTTTC+TGG | 0.095632 | 4.3:-27675846 | None:intergenic |
| GATATTCCAAGATTCTTTCT+GGG | 0.343275 | 4.3:-27675845 | None:intergenic |
| TGCTGCCCGTCTACTTTCTC+TGG | 0.355908 | 4.3:-27675595 | None:intergenic |
| TAGAAAGATTGCTGTATTTG+TGG | 0.375791 | 4.3:+27675767 | MS.gene059503:CDS |
| ATGGGACAGTGAATGAGATT+TGG | 0.417663 | 4.3:+27677715 | MS.gene059503:CDS |
| ATCTCATTCACTGTCCCATC+TGG | 0.420625 | 4.3:-27677711 | None:intergenic |
| TTTACAGGGAGGGAAAATTC+GGG | 0.448142 | 4.3:+27675512 | MS.gene059503:CDS |
| AAGTTCTGCTTACATCCTGC+TGG | 0.454835 | 4.3:+27675639 | MS.gene059503:CDS |
| CAATTTGTTTATGTCATCGC+TGG | 0.459768 | 4.3:+27675488 | MS.gene059503:CDS |
| GTACATACGCAAGAGCAATC+AGG | 0.476526 | 4.3:-27677810 | None:intergenic |
| ATAAAGTTCCAATGGCAGTC+TGG | 0.477423 | 4.3:-27677836 | None:intergenic |
| CATGACCCCAGAAAGAATCT+TGG | 0.482919 | 4.3:+27675839 | MS.gene059503:CDS |
| GTTAATCATCAACTTGATCA+AGG | 0.483475 | 4.3:-27677760 | None:intergenic |
| TGATGATTAACCGCGAGAAA+CGG | 0.489158 | 4.3:+27677772 | MS.gene059503:CDS |
| AAAATTGACAACAAATATCC+TGG | 0.498318 | 4.3:-27675810 | None:intergenic |
| GATAGTCAGCTTGTGTGTTC+CGG | 0.510208 | 4.3:+27675695 | MS.gene059503:CDS |
| TGTACAAACCAGACTGCCAT+TGG | 0.511927 | 4.3:+27677828 | MS.gene059503:CDS |
| TAGTCTATAGTATCTTCAAA+AGG | 0.528476 | 4.3:-27675744 | None:intergenic |
| AGTTCTGCTTACATCCTGCT+GGG | 0.532501 | 4.3:+27675640 | MS.gene059503:CDS |
| CACAATCCAGAGAAAGTAGA+CGG | 0.560560 | 4.3:+27675589 | MS.gene059503:CDS |
| TTGTAAACAGCCGTTTCTCG+CGG | 0.567847 | 4.3:-27677782 | None:intergenic |
| TTTGAATATGATGAACCAGA+TGG | 0.569819 | 4.3:+27677696 | MS.gene059503:CDS |
| ATATTCCAAGATTCTTTCTG+GGG | 0.572068 | 4.3:-27675844 | None:intergenic |
| GATGATGTTATAATAAAGCA+TGG | 0.572770 | 4.3:+27675564 | MS.gene059503:CDS |
| ATGCTATCACTGACAATCAC+CGG | 0.573180 | 4.3:-27675714 | None:intergenic |
| ATATCAGAAAGAACTAAAAG+AGG | 0.578531 | 4.3:+27675863 | MS.gene059503:CDS |
| TCAAACAATCGACAGGCTGA+TGG | 0.585845 | 4.3:-27675669 | None:intergenic |
| CGAGAAACGGCTGTTTACAA+AGG | 0.586538 | 4.3:+27677785 | MS.gene059503:CDS |
| GCTGATGGAGTATCCCCAGC+AGG | 0.587369 | 4.3:-27675654 | None:intergenic |
| ACTGCTGCTGCTATACAGCC+AGG | 0.587396 | 4.3:+27675792 | MS.gene059503:CDS |
| TATCGCATCAAACAATCGAC+AGG | 0.588955 | 4.3:-27675676 | None:intergenic |
| AGTAGACGGGCAGCATCACA+AGG | 0.605566 | 4.3:+27675603 | MS.gene059503:CDS |
| TAAGTGCTATAAAGTTCCAA+TGG | 0.607228 | 4.3:-27677844 | None:intergenic |
| ACAATCCAGAGAAAGTAGAC+GGG | 0.615542 | 4.3:+27675590 | MS.gene059503:CDS |
| TTGAATATGATGAACCAGAT+GGG | 0.618336 | 4.3:+27677697 | MS.gene059503:CDS |
| TTAATCATCAACTTGATCAA+GGG | 0.621078 | 4.3:-27677759 | None:intergenic |
| GTTCTGCTTACATCCTGCTG+GGG | 0.660414 | 4.3:+27675641 | MS.gene059503:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTAAAAAATAATCTCT+TGG | + | chr4.3:27675969-27675988 | MS.gene059503:intron | 10.0% |
| !!! | TATTTTTTAAAAATGCAATA+GGG | - | chr4.3:27675963-27675982 | None:intergenic | 10.0% |
| !!! | TTATTTTTTAAAAATGCAAT+AGG | - | chr4.3:27675964-27675983 | None:intergenic | 10.0% |
| !!! | TTTCTTACTTTTTTTTATTA+GGG | + | chr4.3:27677326-27677345 | MS.gene059503:intron | 10.0% |
| !!! | TTTTCTTACTTTTTTTTATT+AGG | + | chr4.3:27677325-27677344 | MS.gene059503:intron | 10.0% |
| !!! | TTTTGATTATTTAATATATC+TGG | + | chr4.3:27677655-27677674 | MS.gene059503:intron | 10.0% |
| !!! | ATTTTGAATAAAATTGATTC+TGG | - | chr4.3:27676392-27676411 | None:intergenic | 15.0% |
| !!! | ATTTTTTAAAAATGCAATAG+GGG | - | chr4.3:27675962-27675981 | None:intergenic | 15.0% |
| !!! | TTCTTACTTTTTTTTATTAG+GGG | + | chr4.3:27677327-27677346 | MS.gene059503:intron | 15.0% |
| !! | AACAAAAAGCAATAAACTAA+CGG | + | chr4.3:27676994-27677013 | MS.gene059503:intron | 20.0% |
| !! | ATCAAGTACTTAATTCTAAA+TGG | - | chr4.3:27677049-27677068 | None:intergenic | 20.0% |
| !!! | AAAGTGGATTTAACAATTTA+AGG | - | chr4.3:27676319-27676338 | None:intergenic | 20.0% |
| !!! | AATTATAACCCACTTATTTT+TGG | - | chr4.3:27676803-27676822 | None:intergenic | 20.0% |
| !!! | ACCAAAATTGATTCTAAAAT+TGG | + | chr4.3:27676173-27676192 | MS.gene059503:intron | 20.0% |
| !!! | ACCAATTTTAGAATCAATTT+TGG | - | chr4.3:27676177-27676196 | None:intergenic | 20.0% |
| !!! | AGAATTGATTTTATCATGTT+TGG | + | chr4.3:27676197-27676216 | MS.gene059503:intron | 20.0% |
| !!! | ATTATAACCCACTTATTTTT+GGG | - | chr4.3:27676802-27676821 | None:intergenic | 20.0% |
| !!! | GAATTGATTTTATCATGTTT+GGG | + | chr4.3:27676198-27676217 | MS.gene059503:intron | 20.0% |
| !!! | GAATTTGAAACACTTTTTAT+TGG | - | chr4.3:27676047-27676066 | None:intergenic | 20.0% |
| !!! | TATTTAATATATCTGGTTTC+AGG | + | chr4.3:27677662-27677681 | MS.gene059503:intron | 20.0% |
| !!! | TTTATGTTTGGTTTCAATTT+TGG | + | chr4.3:27676146-27676165 | MS.gene059503:intron | 20.0% |
| !!! | TTTTTTAAAAATGCAATAGG+GGG | - | chr4.3:27675961-27675980 | None:intergenic | 20.0% |
| ! | AAAATTGACAACAAATATCC+TGG | - | chr4.3:27675813-27675832 | None:intergenic | 25.0% |
| ! | ACTTCTGCAATAAAATCTAT+CGG | + | chr4.3:27675910-27675929 | MS.gene059503:intron | 25.0% |
| ! | ATATCAGAAAGAACTAAAAG+AGG | + | chr4.3:27675863-27675882 | MS.gene059503:CDS | 25.0% |
| ! | ATGAAGGCTAAAAACTTAAA+AGG | - | chr4.3:27676081-27676100 | None:intergenic | 25.0% |
| ! | GACTTTATTAAGTAGTTAGA+AGG | + | chr4.3:27677201-27677220 | MS.gene059503:intron | 25.0% |
| ! | GATGATGTTATAATAAAGCA+TGG | + | chr4.3:27675564-27675583 | MS.gene059503:CDS | 25.0% |
| ! | TAGTCTATAGTATCTTCAAA+AGG | - | chr4.3:27675747-27675766 | None:intergenic | 25.0% |
| ! | TATGATAGCATGAACAAAAT+TGG | + | chr4.3:27675996-27676015 | MS.gene059503:intron | 25.0% |
| ! | TGGATGTATTTATGTAAAAG+TGG | - | chr4.3:27676335-27676354 | None:intergenic | 25.0% |
| ! | TGTTAATCAACATTTAATCC+TGG | + | chr4.3:27677403-27677422 | MS.gene059503:intron | 25.0% |
| ! | TTAATCATCAACTTGATCAA+GGG | - | chr4.3:27677762-27677781 | None:intergenic | 25.0% |
| !! | AGCAATTGAGAATGATATTT+TGG | + | chr4.3:27677120-27677139 | MS.gene059503:intron | 25.0% |
| !! | ATATGATTAGCATTGAGAAA+AGG | + | chr4.3:27677077-27677096 | MS.gene059503:intron | 25.0% |
| !! | TAAATGTTGATTAACAACCA+GGG | - | chr4.3:27677399-27677418 | None:intergenic | 25.0% |
| !! | TTAAATGTTGATTAACAACC+AGG | - | chr4.3:27677400-27677419 | None:intergenic | 25.0% |
| !! | TTTTTATCTGCACATTCATT+GGG | - | chr4.3:27676857-27676876 | None:intergenic | 25.0% |
| !!! | ACGATTTCTAATTCTAAAAC+AGG | + | chr4.3:27677602-27677621 | MS.gene059503:intron | 25.0% |
| !!! | ACTTTTTATTGGCTATAAGT+AGG | - | chr4.3:27676036-27676055 | None:intergenic | 25.0% |
| !!! | AGGGTAGTTTTTTTGAAATT+TGG | - | chr4.3:27677743-27677762 | None:intergenic | 25.0% |
| !!! | CGATTTCTAATTCTAAAACA+GGG | + | chr4.3:27677603-27677622 | MS.gene059503:intron | 25.0% |
| !!! | GTTTAGCTTTAGTTTATGTT+TGG | + | chr4.3:27676134-27676153 | MS.gene059503:intron | 25.0% |
| !!! | TATTTGTTGTCAATTTTGAG+AGG | + | chr4.3:27675816-27675835 | MS.gene059503:CDS | 25.0% |
| !!! | TTGTTTCAAAAAGTGTTAGA+AGG | + | chr4.3:27677176-27677195 | MS.gene059503:intron | 25.0% |
| !!! | TTTTTTATCTGCACATTCAT+TGG | - | chr4.3:27676858-27676877 | None:intergenic | 25.0% |
| AACATTTAATCCTGGTATCA+TGG | + | chr4.3:27677411-27677430 | MS.gene059503:intron | 30.0% | |
| AAGGCTAAAAACTTAAAAGG+AGG | - | chr4.3:27676078-27676097 | None:intergenic | 30.0% | |
| ACTTATGCTATGCATTTAGT+AGG | - | chr4.3:27676616-27676635 | None:intergenic | 30.0% | |
| AGGCTAAAAACTTAAAAGGA+GGG | - | chr4.3:27676077-27676096 | None:intergenic | 30.0% | |
| ATAACTAAGTTTGAGCAAGT+AGG | - | chr4.3:27677503-27677522 | None:intergenic | 30.0% | |
| ATATTCCAAGATTCTTTCTG+GGG | - | chr4.3:27675847-27675866 | None:intergenic | 30.0% | |
| ATCATAATGTCAATCTTGCT+TGG | - | chr4.3:27676657-27676676 | None:intergenic | 30.0% | |
| ATGAACAAAATTGGTTGACA+TGG | + | chr4.3:27676005-27676024 | MS.gene059503:intron | 30.0% | |
| ATGTGTCAATTAATTGCACT+GGG | - | chr4.3:27676925-27676944 | None:intergenic | 30.0% | |
| CTTAATAGTGACCTTGAATT+GGG | + | chr4.3:27676691-27676710 | MS.gene059503:intron | 30.0% | |
| CTTATGCTATGCATTTAGTA+GGG | - | chr4.3:27676615-27676634 | None:intergenic | 30.0% | |
| GATATTCCAAGATTCTTTCT+GGG | - | chr4.3:27675848-27675867 | None:intergenic | 30.0% | |
| GATGTAAAGTGATTTATGCT+TGG | - | chr4.3:27676355-27676374 | None:intergenic | 30.0% | |
| GTTAATCATCAACTTGATCA+AGG | - | chr4.3:27677763-27677782 | None:intergenic | 30.0% | |
| TAGAAAGATTGCTGTATTTG+TGG | + | chr4.3:27675767-27675786 | MS.gene059503:CDS | 30.0% | |
| TCAAGGTCACTATTAAGATT+TGG | - | chr4.3:27676688-27676707 | None:intergenic | 30.0% | |
| TCAATTACCAAGTGTTTGTT+TGG | - | chr4.3:27676435-27676454 | None:intergenic | 30.0% | |
| TCTTAATAGTGACCTTGAAT+TGG | + | chr4.3:27676690-27676709 | MS.gene059503:intron | 30.0% | |
| TGATATTCCAAGATTCTTTC+TGG | - | chr4.3:27675849-27675868 | None:intergenic | 30.0% | |
| TTACTACTTGTACAGATACA+AGG | - | chr4.3:27677465-27677484 | None:intergenic | 30.0% | |
| TTATGCTATGCATTTAGTAG+GGG | - | chr4.3:27676614-27676633 | None:intergenic | 30.0% | |
| TTGAATATGATGAACCAGAT+GGG | + | chr4.3:27677697-27677716 | MS.gene059503:CDS | 30.0% | |
| TTGGGATGATTTAAACTTCA+AGG | + | chr4.3:27676216-27676235 | MS.gene059503:intron | 30.0% | |
| TTTCCTGTATGTTGTTAACA+GGG | + | chr4.3:27676749-27676768 | MS.gene059503:intron | 30.0% | |
| TTTGAATATGATGAACCAGA+TGG | + | chr4.3:27677696-27677715 | MS.gene059503:CDS | 30.0% | |
| ! | ACCACAGTTTTTGTATATGA+AGG | - | chr4.3:27676097-27676116 | None:intergenic | 30.0% |
| ! | CGTTTCTAAAGATTATAGCA+GGG | + | chr4.3:27677353-27677372 | MS.gene059503:intron | 30.0% |
| ! | TCGTTTCTAAAGATTATAGC+AGG | + | chr4.3:27677352-27677371 | MS.gene059503:intron | 30.0% |
| ! | TGCTATAATCTTTAGAAACG+AGG | - | chr4.3:27677353-27677372 | None:intergenic | 30.0% |
| ! | TGTAGAATTGATTCTACTTG+AGG | + | chr4.3:27676254-27676273 | MS.gene059503:intron | 30.0% |
| !! | ATGTTTGGTTTCAATTTTGG+AGG | + | chr4.3:27676149-27676168 | MS.gene059503:intron | 30.0% |
| !! | GCTTTTTGTTGCTTCTTTAT+AGG | - | chr4.3:27676984-27677003 | None:intergenic | 30.0% |
| !! | TGTTTGGTTTCAATTTTGGA+GGG | + | chr4.3:27676150-27676169 | MS.gene059503:intron | 30.0% |
| ATTGCAAATTGCCCAATTCA+AGG | - | chr4.3:27676705-27676724 | None:intergenic | 35.0% | |
| CATGTGTCAATTAATTGCAC+TGG | - | chr4.3:27676926-27676945 | None:intergenic | 35.0% | |
| CTTTCCTGTATGTTGTTAAC+AGG | + | chr4.3:27676748-27676767 | MS.gene059503:intron | 35.0% | |
| GATTCTGGATAAGAGTAGAT+TGG | - | chr4.3:27676377-27676396 | None:intergenic | 35.0% | |
| GCCTTCATATACAAAAACTG+TGG | + | chr4.3:27676093-27676112 | MS.gene059503:intron | 35.0% | |
| TTGAATTGGGCAATTTGCAA+TGG | + | chr4.3:27676704-27676723 | MS.gene059503:intron | 35.0% | |
| ! | AGCATTGAGAAAAGGCTAAA+TGG | + | chr4.3:27677085-27677104 | MS.gene059503:intron | 35.0% |
| ! | CAATTTGTTTATGTCATCGC+TGG | + | chr4.3:27675488-27675507 | MS.gene059503:CDS | 35.0% |
| ! | TTTTACAGGGAGGGAAAATT+CGG | + | chr4.3:27675511-27675530 | MS.gene059503:CDS | 35.0% |
| !! | CAAAAACTGTGGTATTGATG+AGG | + | chr4.3:27676104-27676123 | MS.gene059503:intron | 35.0% |
| ACAATCCAGAGAAAGTAGAC+GGG | + | chr4.3:27675590-27675609 | MS.gene059503:CDS | 40.0% | |
| ATAAAGTTCCAATGGCAGTC+TGG | - | chr4.3:27677839-27677858 | None:intergenic | 40.0% | |
| ATGCTATCACTGACAATCAC+CGG | - | chr4.3:27675717-27675736 | None:intergenic | 40.0% | |
| ATGGGACAGTGAATGAGATT+TGG | + | chr4.3:27677715-27677734 | MS.gene059503:CDS | 40.0% | |
| CACAATCCAGAGAAAGTAGA+CGG | + | chr4.3:27675589-27675608 | MS.gene059503:CDS | 40.0% | |
| GACACATGATGATTGCATCT+TGG | + | chr4.3:27676938-27676957 | MS.gene059503:intron | 40.0% | |
| TATCGCATCAAACAATCGAC+AGG | - | chr4.3:27675679-27675698 | None:intergenic | 40.0% | |
| TCAATTAATTGCACTGGGCT+GGG | - | chr4.3:27676920-27676939 | None:intergenic | 40.0% | |
| TGATGATTAACCGCGAGAAA+CGG | + | chr4.3:27677772-27677791 | MS.gene059503:CDS | 40.0% | |
| TTTACAGGGAGGGAAAATTC+GGG | + | chr4.3:27675512-27675531 | MS.gene059503:CDS | 40.0% | |
| ! | CAAGTGTTTGTTTGGTTCAG+CGG | - | chr4.3:27676427-27676446 | None:intergenic | 40.0% |
| ! | TACAAGGAAGCGTAAATGCA+TGG | - | chr4.3:27677449-27677468 | None:intergenic | 40.0% |
| !!! | ATGTCATCGCTGGTTTTACA+GGG | + | chr4.3:27675498-27675517 | MS.gene059503:CDS | 40.0% |
| !!! | TATGTCATCGCTGGTTTTAC+AGG | + | chr4.3:27675497-27675516 | MS.gene059503:CDS | 40.0% |
| AAGTTCTGCTTACATCCTGC+TGG | + | chr4.3:27675639-27675658 | MS.gene059503:CDS | 45.0% | |
| ACATTCATTGGGCTCTACTG+GGG | - | chr4.3:27676846-27676865 | None:intergenic | 45.0% | |
| AGTTCTGCTTACATCCTGCT+GGG | + | chr4.3:27675640-27675659 | MS.gene059503:CDS | 45.0% | |
| ATCTCATTCACTGTCCCATC+TGG | - | chr4.3:27677714-27677733 | None:intergenic | 45.0% | |
| CACAGGGCCCAAAAATAAGT+GGG | + | chr4.3:27676792-27676811 | MS.gene059503:intron | 45.0% | |
| CACATTCATTGGGCTCTACT+GGG | - | chr4.3:27676847-27676866 | None:intergenic | 45.0% | |
| CATGACCCCAGAAAGAATCT+TGG | + | chr4.3:27675839-27675858 | MS.gene059503:CDS | 45.0% | |
| CGAGAAACGGCTGTTTACAA+AGG | + | chr4.3:27677785-27677804 | MS.gene059503:CDS | 45.0% | |
| CGCTGAACCAAACAAACACT+TGG | + | chr4.3:27676425-27676444 | MS.gene059503:intron | 45.0% | |
| CTGTATGTTGTTAACAGGGC+CGG | + | chr4.3:27676753-27676772 | MS.gene059503:intron | 45.0% | |
| GATAGTCAGCTTGTGTGTTC+CGG | + | chr4.3:27675695-27675714 | MS.gene059503:CDS | 45.0% | |
| GTACATACGCAAGAGCAATC+AGG | - | chr4.3:27677813-27677832 | None:intergenic | 45.0% | |
| GTCAATTAATTGCACTGGGC+TGG | - | chr4.3:27676921-27676940 | None:intergenic | 45.0% | |
| GTTGCTTCTTTATAGGCCAG+TGG | - | chr4.3:27676977-27676996 | None:intergenic | 45.0% | |
| TCAAACAATCGACAGGCTGA+TGG | - | chr4.3:27675672-27675691 | None:intergenic | 45.0% | |
| TCCATGTACACCATGATACC+AGG | - | chr4.3:27677424-27677443 | None:intergenic | 45.0% | |
| TCCTGGTATCATGGTGTACA+TGG | + | chr4.3:27677420-27677439 | MS.gene059503:intron | 45.0% | |
| TGTACAAACCAGACTGCCAT+TGG | + | chr4.3:27677828-27677847 | MS.gene059503:CDS | 45.0% | |
| TTAGTAGGGGACTAGAAGCT+TGG | - | chr4.3:27676601-27676620 | None:intergenic | 45.0% | |
| TTGTAAACAGCCGTTTCTCG+CGG | - | chr4.3:27677785-27677804 | None:intergenic | 45.0% | |
| ! | CTGGGCGTTTGTTAACTACA+AGG | - | chr4.3:27676902-27676921 | None:intergenic | 45.0% |
| CCAGGGCTTCTTGAACAATG+AGG | - | chr4.3:27677382-27677401 | None:intergenic | 50.0% | |
| CCTCATTGTTCAAGAAGCCC+TGG | + | chr4.3:27677379-27677398 | MS.gene059503:intron | 50.0% | |
| CGGCCCTGTTAACAACATAC+AGG | - | chr4.3:27676755-27676774 | None:intergenic | 50.0% | |
| GCACAGGGCCCAAAAATAAG+TGG | + | chr4.3:27676791-27676810 | MS.gene059503:intron | 50.0% | |
| GCACATTCATTGGGCTCTAC+TGG | - | chr4.3:27676848-27676867 | None:intergenic | 50.0% | |
| GTTCTGCTTACATCCTGCTG+GGG | + | chr4.3:27675641-27675660 | MS.gene059503:CDS | 50.0% | |
| !!! | CATCGCTGGTTTTACAGGGA+GGG | + | chr4.3:27675502-27675521 | MS.gene059503:CDS | 50.0% |
| !!! | TCATCGCTGGTTTTACAGGG+AGG | + | chr4.3:27675501-27675520 | MS.gene059503:CDS | 50.0% |
| ACTGCTGCTGCTATACAGCC+AGG | + | chr4.3:27675792-27675811 | MS.gene059503:CDS | 55.0% | |
| AGTAGACGGGCAGCATCACA+AGG | + | chr4.3:27675603-27675622 | MS.gene059503:CDS | 55.0% | |
| CATTGGGCTCTACTGGGGTT+GGG | - | chr4.3:27676841-27676860 | None:intergenic | 55.0% | |
| TCATTGGGCTCTACTGGGGT+TGG | - | chr4.3:27676842-27676861 | None:intergenic | 55.0% | |
| TGCTGCCCGTCTACTTTCTC+TGG | - | chr4.3:27675598-27675617 | None:intergenic | 55.0% | |
| TGGCCACAGCACATCACCAC+TGG | + | chr4.3:27676958-27676977 | MS.gene059503:intron | 60.0% | |
| ! | AGGCCAGTGGTGATGTGCTG+TGG | - | chr4.3:27676964-27676983 | None:intergenic | 60.0% |
| ! | GCTGATGGAGTATCCCCAGC+AGG | - | chr4.3:27675657-27675676 | None:intergenic | 60.0% |
| TTAACAGGGCCGGCCCTGTG+CGG | + | chr4.3:27676763-27676782 | MS.gene059503:intron | 65.0% | |
| CCCTGTGCAGTGCCCGCACA+GGG | - | chr4.3:27676779-27676798 | None:intergenic | 70.0% | |
| TAACAGGGCCGGCCCTGTGC+GGG | + | chr4.3:27676764-27676783 | MS.gene059503:intron | 70.0% | |
| ! | CCCTGTGCGGGCACTGCACA+GGG | + | chr4.3:27676776-27676795 | MS.gene059503:intron | 70.0% |
| GCCCTGTGCAGTGCCCGCAC+AGG | - | chr4.3:27676780-27676799 | None:intergenic | 75.0% | |
| GTGCAGTGCCCGCACAGGGC+CGG | - | chr4.3:27676775-27676794 | None:intergenic | 75.0% | |
| ! | GCCCTGTGCGGGCACTGCAC+AGG | + | chr4.3:27676775-27676794 | MS.gene059503:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 27675471 | 27677860 | 27675471 | ID=MS.gene059503 |
| chr4.3 | mRNA | 27675471 | 27677860 | 27675471 | ID=MS.gene059503.t1;Parent=MS.gene059503 |
| chr4.3 | exon | 27675471 | 27675884 | 27675471 | ID=MS.gene059503.t1.exon1;Parent=MS.gene059503.t1 |
| chr4.3 | CDS | 27675471 | 27675884 | 27675471 | ID=cds.MS.gene059503.t1;Parent=MS.gene059503.t1 |
| chr4.3 | exon | 27677684 | 27677860 | 27677684 | ID=MS.gene059503.t1.exon2;Parent=MS.gene059503.t1 |
| chr4.3 | CDS | 27677684 | 27677860 | 27677684 | ID=cds.MS.gene059503.t1;Parent=MS.gene059503.t1 |
| Gene Sequence |
| Protein sequence |
