AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene059535

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059535.t1 MTR_6g088885 98.225 507 9 0 1 507 1 507 0.0 1033
MS.gene059535.t1 MTR_8g102340 72.854 501 94 6 1 500 1 460 0.0 723
MS.gene059535.t1 MTR_3g065460 40.509 432 245 3 26 454 23 445 1.40e-119 360
MS.gene059535.t1 MTR_5g085580 40.632 443 247 3 27 454 25 466 3.45e-119 358
MS.gene059535.t1 MTR_4g069940 39.294 453 268 4 7 454 9 459 4.91e-119 358
MS.gene059535.t1 MTR_8g085720 37.600 500 296 5 11 502 7 498 5.29e-119 359
MS.gene059535.t1 MTR_1g031900 39.337 483 280 4 8 486 5 478 1.38e-117 355
MS.gene059535.t1 MTR_4g132280 39.337 483 274 6 24 501 42 510 9.16e-117 354
MS.gene059535.t1 MTR_1g056640 39.294 453 246 4 27 452 38 488 1.38e-116 353
MS.gene059535.t1 MTR_3g116510 40.138 436 258 2 25 459 26 459 2.91e-116 350
MS.gene059535.t1 MTR_1g031900 41.339 433 242 4 25 454 22 445 1.65e-115 350
MS.gene059535.t1 MTR_5g078200 39.741 463 264 6 7 465 5 456 7.30e-115 353
MS.gene059535.t1 MTR_3g083580 34.585 506 300 8 7 499 11 498 5.58e-113 343
MS.gene059535.t1 MTR_7g053500 40.783 434 248 8 28 454 27 458 8.36e-112 339
MS.gene059535.t1 MTR_5g078200 40.509 432 244 5 38 465 1 423 8.66e-111 342
MS.gene059535.t1 MTR_8g012400 39.815 432 252 7 28 454 30 458 4.39e-110 335
MS.gene059535.t1 MTR_1g022160 37.174 460 260 6 26 460 23 478 1.25e-109 334
MS.gene059535.t1 MTR_1g022160 36.324 457 264 5 26 457 23 477 4.78e-106 325
MS.gene059535.t1 MTR_1g022160 36.689 447 256 5 26 447 23 467 5.51e-105 322
MS.gene059535.t1 MTR_7g026340 39.862 434 243 11 27 452 23 446 1.77e-101 312
MS.gene059535.t1 MTR_4g088155 35.667 457 283 6 7 454 3 457 7.63e-100 308
MS.gene059535.t1 MTR_4g083500 36.821 497 283 14 27 501 44 531 1.83e-96 302
MS.gene059535.t1 MTR_7g053500 41.099 382 216 8 80 454 2 381 7.75e-96 295
MS.gene059535.t1 MTR_8g012400 39.737 380 221 7 80 454 2 378 9.07e-94 290
MS.gene059535.t1 MTR_3g080410 43.119 327 185 1 24 349 23 349 7.66e-93 287
MS.gene059535.t1 MTR_1g077990 45.483 321 172 3 27 346 31 349 1.32e-92 288
MS.gene059535.t1 MTR_4g052970 44.037 327 175 3 28 350 30 352 1.24e-91 285
MS.gene059535.t1 MTR_4g010200 40.510 353 208 2 5 355 10 362 2.02e-91 284
MS.gene059535.t1 MTR_4g084480 42.778 360 197 3 28 379 33 391 2.67e-91 284
MS.gene059535.t1 MTR_2g086530 41.379 348 199 3 5 350 6 350 4.32e-91 283
MS.gene059535.t1 MTR_4g084480 42.382 361 199 3 28 387 33 385 8.41e-91 283
MS.gene059535.t1 MTR_4g084480 45.625 320 172 2 28 346 26 344 2.17e-90 281
MS.gene059535.t1 MTR_2g086530 42.424 330 186 2 22 350 3 329 2.54e-90 281
MS.gene059535.t1 MTR_1g022160 41.509 318 184 2 26 341 23 340 2.31e-85 270
MS.gene059535.t1 MTR_3g116510 39.450 327 196 1 133 459 1 325 1.79e-83 261
MS.gene059535.t1 MTR_1g007810 43.396 318 172 5 27 341 16 328 1.87e-83 263
MS.gene059535.t1 MTR_2g019345 41.593 339 195 3 6 343 3 339 7.12e-83 263
MS.gene059535.t1 MTR_4g114850 41.121 321 188 1 28 347 27 347 8.54e-83 261
MS.gene059535.t1 MTR_4g114850 41.121 321 188 1 28 347 27 347 1.18e-82 261
MS.gene059535.t1 MTR_4g114850 41.121 321 188 1 28 347 27 347 1.31e-82 261
MS.gene059535.t1 MTR_1g052430 38.907 311 182 4 27 336 32 335 2.32e-74 241
MS.gene059535.t1 MTR_4g076500 36.570 309 188 2 27 335 78 378 2.86e-73 237
MS.gene059535.t1 MTR_2g034480 37.243 341 199 8 27 362 27 357 4.32e-72 233
MS.gene059535.t1 MTR_4g076255 37.304 319 187 6 27 345 25 330 2.04e-71 231
MS.gene059535.t1 MTR_2g034470 37.538 325 191 7 27 348 30 345 3.07e-71 231
MS.gene059535.t1 MTR_7g081350 34.627 335 209 6 9 343 11 335 1.09e-69 226
MS.gene059535.t1 MTR_4g076570 37.299 311 187 4 27 336 22 325 1.23e-69 227
MS.gene059535.t1 MTR_8g092070 31.624 468 284 15 7 454 6 457 6.94e-69 231
MS.gene059535.t1 MTR_2g034440 37.380 313 184 7 27 336 22 325 5.17e-68 222
MS.gene059535.t1 MTR_4g076470 34.311 341 211 6 5 345 1 328 5.66e-68 221
MS.gene059535.t1 MTR_2g034470 37.224 317 187 7 35 348 3 310 9.52e-67 218
MS.gene059535.t1 MTR_4g076490 34.675 323 199 5 25 347 95 405 1.82e-66 221
MS.gene059535.t1 MTR_4g076430 32.749 342 217 6 5 346 1 329 1.44e-64 213
MS.gene059535.t1 MTR_4g076440 33.138 341 215 6 5 345 1 328 6.40e-64 211
MS.gene059535.t1 MTR_1g010120 31.507 438 275 13 27 454 26 448 3.42e-62 211
MS.gene059535.t1 MTR_4g112025 31.304 460 286 17 8 454 14 456 1.36e-61 210
MS.gene059535.t1 MTR_1g053320 29.913 458 298 13 6 452 9 454 2.79e-61 209
MS.gene059535.t1 MTR_3g031770 30.917 469 281 17 27 477 27 470 2.26e-60 206
MS.gene059535.t1 MTR_3g108600 30.853 457 270 16 7 454 16 435 1.33e-59 204
MS.gene059535.t1 MTR_3g095050 29.741 464 293 18 5 454 11 455 1.93e-59 204
MS.gene059535.t1 MTR_2g027560 29.841 439 287 12 25 455 26 451 4.96e-57 197
MS.gene059535.t1 MTR_7g081370 31.230 317 197 5 27 343 28 323 9.44e-57 192
MS.gene059535.t1 MTR_7g085390 31.116 466 282 19 1 451 1 442 3.43e-56 195
MS.gene059535.t1 MTR_6g032820 30.357 448 272 15 11 438 10 437 3.42e-54 188
MS.gene059535.t1 MTR_5g081720 35.806 310 185 10 43 346 53 354 4.83e-51 178
MS.gene059535.t1 MTR_4g124440 29.691 421 266 16 40 448 41 443 2.63e-50 179
MS.gene059535.t1 MTR_4g134280 31.421 366 235 10 114 474 2 356 1.78e-47 169
MS.gene059535.t1 MTR_8g089400 55.789 95 41 1 365 459 33 126 7.57e-34 125
MS.gene059535.t1 MTR_8g089400 55.789 95 41 1 365 459 53 146 1.96e-33 125
MS.gene059535.t1 MTR_1g116870 48.276 87 43 1 369 455 276 360 7.14e-23 100
MS.gene059535.t1 MTR_3g048280 45.192 104 55 2 351 454 94 195 1.56e-22 95.9
MS.gene059535.t1 MTR_5g097420 46.512 86 45 1 369 454 30 114 2.19e-22 92.8
MS.gene059535.t1 MTR_5g091650 35.616 146 84 4 364 501 103 246 9.34e-22 95.5
MS.gene059535.t1 MTR_8g085440 48.837 86 42 1 369 454 32 115 4.57e-21 89.0
MS.gene059535.t1 MTR_5g091650 44.681 94 50 2 364 457 103 194 1.72e-20 89.7
MS.gene059535.t1 MTR_8g085390 38.136 118 66 2 368 480 29 144 4.49e-19 85.5
MS.gene059535.t1 MTR_8g085420 48.148 81 40 1 369 449 32 110 5.38e-19 84.0
MS.gene059535.t1 MTR_4g079530 35.507 138 82 3 369 506 37 167 1.30e-18 84.0
MS.gene059535.t1 MTR_5g015720 42.045 88 49 2 369 455 329 415 3.83e-17 84.0
MS.gene059535.t1 MTR_2g049670 41.304 92 51 2 368 459 157 245 4.67e-17 82.8
MS.gene059535.t1 MTR_4g079530 40.698 86 50 1 369 454 37 121 7.01e-17 77.4
MS.gene059535.t1 MTR_1g084820 40.217 92 52 2 357 448 408 496 1.44e-16 82.8
MS.gene059535.t1 MTR_1g084820 40.217 92 52 2 357 448 408 496 1.65e-16 82.8
MS.gene059535.t1 MTR_2g072500 40.659 91 50 2 365 454 3 90 2.53e-16 74.7
MS.gene059535.t1 MTR_4g133730 37.931 87 53 1 368 454 27 112 2.69e-16 75.5
MS.gene059535.t1 MTR_4g036775 34.167 120 74 2 217 336 54 168 3.63e-16 78.2
MS.gene059535.t1 MTR_3g082080 42.500 80 44 1 369 448 157 234 3.77e-16 78.6
MS.gene059535.t1 MTR_7g111600 40.698 86 49 2 369 454 160 243 4.62e-16 78.6
MS.gene059535.t1 MTR_7g111600 40.698 86 49 2 369 454 160 243 5.22e-16 79.3
MS.gene059535.t1 MTR_7g111600 37.615 109 66 2 346 454 137 243 9.10e-16 78.6
MS.gene059535.t1 MTR_4g036680 34.167 120 74 2 217 336 54 168 1.16e-15 76.6
MS.gene059535.t1 MTR_4g133735 40.000 85 50 1 368 452 27 110 5.22e-15 71.6
MS.gene059535.t1 MTR_8g085400 42.683 82 42 2 369 450 33 109 9.62e-15 70.9
MS.gene059535.t1 MTR_4g109490 38.372 86 50 2 369 454 24 106 9.98e-15 73.9
MS.gene059535.t1 MTR_8g088120 45.333 75 39 2 380 454 59 131 4.59e-14 72.0
MS.gene059535.t1 MTR_5g044530 38.824 85 50 1 364 448 17 99 2.11e-13 70.5
MS.gene059535.t1 MTR_4g083070 36.782 87 52 2 369 454 21 105 3.84e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059535.t1 AT5G56590 70.435 460 132 4 20 477 19 476 0.0 683
MS.gene059535.t1 AT4G29360 63.158 513 157 7 18 499 28 539 0.0 642
MS.gene059535.t1 AT4G29360 61.132 530 174 7 1 499 1 529 0.0 640
MS.gene059535.t1 AT2G01630 42.609 460 250 5 25 480 21 470 1.39e-127 381
MS.gene059535.t1 AT4G26830 41.722 453 259 5 1 452 1 449 1.07e-125 375
MS.gene059535.t1 AT4G26830 42.523 428 243 3 26 452 28 453 1.78e-125 374
MS.gene059535.t1 AT2G01630 43.560 427 229 4 25 448 21 438 1.29e-124 371
MS.gene059535.t1 AT5G55180 41.667 432 248 4 26 454 26 456 4.35e-123 368
MS.gene059535.t1 AT1G66250 40.947 486 272 7 24 504 29 504 4.88e-122 367
MS.gene059535.t1 AT5G55180 41.784 426 244 4 26 448 26 450 7.09e-121 363
MS.gene059535.t1 AT3G13560 39.956 453 255 5 18 466 17 456 6.17e-120 362
MS.gene059535.t1 AT3G13560 39.956 453 255 5 18 466 17 456 6.17e-120 362
MS.gene059535.t1 AT3G13560 39.956 453 255 5 18 466 17 456 6.17e-120 362
MS.gene059535.t1 AT3G13560 39.956 453 255 5 18 466 17 456 6.17e-120 362
MS.gene059535.t1 AT3G13560 39.956 453 255 5 18 466 17 456 6.17e-120 362
MS.gene059535.t1 AT2G16230 37.370 479 294 4 25 502 23 496 6.89e-119 359
MS.gene059535.t1 AT2G05790 40.000 445 249 5 27 454 25 468 1.33e-118 357
MS.gene059535.t1 AT4G34480 41.860 430 242 3 26 454 25 447 7.98e-118 356
MS.gene059535.t1 AT1G11820 40.397 453 255 5 26 472 43 486 1.13e-115 351
MS.gene059535.t1 AT1G11820 41.315 426 238 4 26 448 43 459 7.31e-113 342
MS.gene059535.t1 AT2G01630 44.000 375 198 4 25 396 21 386 1.11e-103 316
MS.gene059535.t1 AT3G07320 38.194 432 260 6 28 454 26 455 1.62e-103 318
MS.gene059535.t1 AT5G24318 36.923 455 268 9 8 454 12 455 5.67e-102 314
MS.gene059535.t1 AT3G23770 38.041 439 261 6 25 454 35 471 3.05e-100 310
MS.gene059535.t1 AT4G14080 36.902 439 265 7 24 454 39 473 3.61e-100 310
MS.gene059535.t1 AT5G24318 36.283 452 269 9 8 451 12 452 6.96e-99 306
MS.gene059535.t1 AT5G42720 44.023 343 185 3 11 346 5 347 5.92e-98 303
MS.gene059535.t1 AT2G27500 43.768 345 192 2 24 367 26 369 4.59e-96 296
MS.gene059535.t1 AT2G27500 44.248 339 187 2 24 361 26 363 1.43e-95 295
MS.gene059535.t1 AT1G32860 45.031 322 173 3 27 345 29 349 6.52e-95 295
MS.gene059535.t1 AT1G30080 44.476 353 185 3 1 343 1 352 1.03e-94 293
MS.gene059535.t1 AT4G18340 44.606 343 186 3 27 368 34 373 1.37e-94 292
MS.gene059535.t1 AT4G18340 44.606 343 186 3 27 368 34 373 1.83e-94 292
MS.gene059535.t1 AT1G30080 44.476 353 185 3 1 343 1 352 3.94e-94 292
MS.gene059535.t1 AT3G55430 37.385 436 254 14 25 454 27 449 6.60e-94 293
MS.gene059535.t1 AT4G34480 42.815 341 187 3 115 454 3 336 1.04e-90 283
MS.gene059535.t1 AT2G26600 43.558 326 180 2 24 345 28 353 9.16e-90 280
MS.gene059535.t1 AT3G15800 42.857 322 182 2 28 347 44 365 9.48e-87 273
MS.gene059535.t1 AT4G34480 43.260 319 180 1 26 343 25 343 4.24e-86 270
MS.gene059535.t1 AT1G11820 42.202 327 186 1 26 349 43 369 4.84e-86 270
MS.gene059535.t1 AT2G39640 35.045 448 270 10 7 452 12 440 1.93e-84 271
MS.gene059535.t1 AT2G39640 29.508 122 72 2 344 453 423 542 4.47e-14 75.1
MS.gene059535.t1 AT3G61810 42.025 326 175 4 27 346 55 372 1.02e-81 259
MS.gene059535.t1 AT5G42100 41.796 323 183 4 25 343 25 346 3.29e-81 259
MS.gene059535.t1 AT5G24318 39.528 339 196 6 8 343 12 344 3.79e-81 257
MS.gene059535.t1 AT5G42100 41.796 323 183 4 25 343 25 346 5.46e-81 258
MS.gene059535.t1 AT2G27500 44.755 286 156 2 77 361 1 285 1.36e-80 254
MS.gene059535.t1 AT4G16260 38.304 342 201 6 6 346 3 335 2.13e-78 249
MS.gene059535.t1 AT5G24318 38.462 325 185 5 136 454 1 316 3.29e-74 238
MS.gene059535.t1 AT3G57270 37.346 324 193 6 24 345 24 339 9.80e-74 237
MS.gene059535.t1 AT4G16260 38.978 313 181 6 35 346 3 306 1.18e-71 231
MS.gene059535.t1 AT3G57260 35.103 339 201 7 14 345 12 338 1.77e-70 228
MS.gene059535.t1 AT3G57260 35.103 339 201 7 14 345 28 354 3.27e-70 228
MS.gene059535.t1 AT3G57240 36.890 328 193 8 18 345 27 340 2.31e-69 226
MS.gene059535.t1 AT2G26600 43.191 257 142 2 93 345 3 259 2.27e-68 221
MS.gene059535.t1 AT3G46570 39.286 336 191 9 14 343 14 342 1.56e-67 221
MS.gene059535.t1 AT5G20390 36.677 319 192 7 27 343 33 343 5.10e-64 212
MS.gene059535.t1 AT5G20340 35.737 319 195 7 27 343 43 353 1.07e-61 206
MS.gene059535.t1 AT5G58090 31.306 444 281 13 21 454 16 445 6.03e-61 207
MS.gene059535.t1 AT5G18220 30.488 492 292 17 25 500 28 485 2.06e-60 206
MS.gene059535.t1 AT3G24330 30.462 476 295 17 5 463 20 476 2.53e-60 206
MS.gene059535.t1 AT1G77780 34.648 355 217 7 25 379 22 361 8.06e-60 201
MS.gene059535.t1 AT4G31140 29.783 460 291 14 5 454 11 448 2.07e-59 204
MS.gene059535.t1 AT3G04010 30.059 509 306 17 12 502 14 490 3.45e-59 203
MS.gene059535.t1 AT5G20330 35.110 319 197 7 27 343 34 344 5.14e-59 199
MS.gene059535.t1 AT1G33220 35.354 297 184 5 27 322 34 323 2.15e-58 197
MS.gene059535.t1 AT4G17180 30.879 489 294 17 1 474 1 460 4.63e-57 197
MS.gene059535.t1 AT1G77790 32.845 341 220 6 5 343 8 341 1.18e-56 192
MS.gene059535.t1 AT5G58480 30.046 436 280 11 27 454 26 444 7.10e-56 194
MS.gene059535.t1 AT5G64790 28.908 467 303 15 1 454 1 451 2.35e-55 193
MS.gene059535.t1 AT5G20870 29.184 490 303 17 31 500 34 499 3.15e-53 187
MS.gene059535.t1 AT2G19440 30.682 440 273 15 27 452 21 442 2.94e-52 184
MS.gene059535.t1 AT2G19440 30.682 440 273 15 27 452 21 442 2.94e-52 184
MS.gene059535.t1 AT3G55780 34.700 317 195 9 41 351 49 359 7.50e-52 181
MS.gene059535.t1 AT1G64760 29.130 460 288 17 7 452 11 446 6.74e-50 178
MS.gene059535.t1 AT1G64760 29.130 460 288 17 7 452 11 446 6.74e-50 178
MS.gene059535.t1 AT5G20560 32.441 299 195 5 25 322 32 324 2.20e-46 165
MS.gene059535.t1 AT4G05430 52.222 90 42 1 365 454 19 107 2.16e-28 110
MS.gene059535.t1 AT4G05430 52.222 90 42 1 365 454 44 132 3.03e-28 110
MS.gene059535.t1 AT5G67460 27.100 369 205 11 95 455 66 378 3.23e-28 116
MS.gene059535.t1 AT4G05430 53.012 83 38 1 366 448 45 126 3.69e-26 103
MS.gene059535.t1 AT5G67460 27.072 362 200 11 95 448 66 371 1.79e-25 108
MS.gene059535.t1 AT1G66870 38.525 122 63 2 333 454 1 110 9.89e-25 99.0
MS.gene059535.t1 AT1G66870 47.674 86 44 1 369 454 53 137 2.18e-24 99.0
MS.gene059535.t1 AT4G16165 36.066 122 66 2 333 454 1 110 7.52e-23 94.0
MS.gene059535.t1 AT1G66852 45.349 86 45 2 369 454 26 109 4.70e-22 91.7
MS.gene059535.t1 AT5G63225 50.575 87 41 1 368 454 24 108 7.92e-22 90.9
MS.gene059535.t1 AT1G66855 44.186 86 47 1 369 454 26 110 1.51e-21 90.1
MS.gene059535.t1 AT4G09462 48.837 86 42 1 369 454 29 112 1.91e-21 90.1
MS.gene059535.t1 AT4G09465 47.674 86 43 1 369 454 31 114 4.29e-21 89.0
MS.gene059535.t1 AT4G09090 44.944 89 47 1 367 455 29 115 4.69e-21 89.0
MS.gene059535.t1 AT4G09467 47.674 86 43 1 369 454 31 114 5.59e-21 88.6
MS.gene059535.t1 AT4G09464 47.674 86 43 1 369 454 31 114 5.59e-21 88.6
MS.gene059535.t1 AT5G63240 41.414 99 57 1 358 455 29 127 1.47e-20 88.2
MS.gene059535.t1 AT2G30933 34.815 135 84 3 369 501 82 214 1.90e-20 90.5
MS.gene059535.t1 AT1G79480 43.023 86 47 1 369 454 311 394 2.44e-20 93.6
MS.gene059535.t1 AT1G79480 43.023 86 47 1 369 454 310 393 2.51e-20 93.6
MS.gene059535.t1 AT5G63250 41.414 99 57 1 358 455 31 129 2.98e-20 87.4
MS.gene059535.t1 AT4G09466 45.349 86 45 1 369 454 31 114 1.55e-19 84.7
MS.gene059535.t1 AT4G13600 37.383 107 65 1 369 475 61 165 7.16e-19 86.3
MS.gene059535.t1 AT1G29380 45.977 87 45 2 368 454 147 231 2.04e-18 86.7
MS.gene059535.t1 AT1G09460 44.681 94 47 3 366 459 134 222 2.06e-18 86.7
MS.gene059535.t1 AT5G35740 40.426 94 54 2 362 454 23 115 2.79e-18 81.3
MS.gene059535.t1 AT1G29380 45.977 87 45 2 368 454 147 231 3.25e-18 85.1
MS.gene059535.t1 AT3G58100 35.833 120 75 2 369 487 41 159 4.20e-18 82.4
MS.gene059535.t1 AT2G04910 40.230 87 51 1 368 454 14 99 5.54e-18 79.7
MS.gene059535.t1 AT1G29380 48.148 81 40 2 368 448 147 225 1.10e-17 82.8
MS.gene059535.t1 AT1G29380 48.148 81 40 2 368 448 147 225 1.10e-17 82.8
MS.gene059535.t1 AT3G58100 35.833 120 75 2 369 487 117 235 1.28e-17 83.2
MS.gene059535.t1 AT2G29735 39.362 94 53 2 363 454 25 116 3.43e-17 78.2
MS.gene059535.t1 AT1G78520 35.294 102 63 1 353 454 16 114 3.62e-17 77.8
MS.gene059535.t1 AT5G53600 40.698 86 48 1 369 454 29 111 5.95e-17 77.0
MS.gene059535.t1 AT5G63230 41.379 87 49 1 368 454 25 109 1.16e-16 76.3
MS.gene059535.t1 AT2G30933 42.500 80 44 2 369 448 82 159 1.59e-16 77.4
MS.gene059535.t1 AT2G30933 42.500 80 44 2 369 448 82 159 1.59e-16 77.4
MS.gene059535.t1 AT5G61130 38.372 86 51 1 369 454 21 104 2.33e-16 78.2
MS.gene059535.t1 AT5G53610 44.048 84 44 1 369 452 28 108 2.67e-16 75.1
MS.gene059535.t1 AT2G04910 40.741 81 47 1 368 448 14 93 4.83e-16 75.1
MS.gene059535.t1 AT2G43670 36.842 95 57 1 360 454 26 117 4.88e-16 74.7
MS.gene059535.t1 AT1G18650 37.500 96 57 2 359 454 12 104 5.01e-16 76.6
MS.gene059535.t1 AT1G18650 37.500 96 57 2 359 454 12 104 1.09e-15 74.3
MS.gene059535.t1 AT5G08000 30.833 120 81 1 366 485 37 154 9.43e-14 70.9
MS.gene059535.t1 AT5G08000 30.769 117 79 1 369 485 21 135 8.28e-13 67.8
MS.gene059535.t1 AT1G26450 39.706 68 39 1 375 442 26 91 3.64e-11 62.8

Find 112 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTACAGAATGCGATAAAT+TGG 0.156679 6.4:+62143185 MS.gene059535:CDS
GATCTTTCTCCTCTTTCTTT+TGG 0.175375 6.4:+62143853 MS.gene059535:CDS
TCTGATGTTGCTTGTAGTTT+TGG 0.219401 6.4:+62143334 MS.gene059535:CDS
TTTCGCTGTTCAACGAAAAT+AGG 0.254836 6.4:+62142984 MS.gene059535:CDS
AATTGGGCTTGTGGTACTTC+TGG 0.267372 6.4:+62143202 MS.gene059535:CDS
GTTTGGAATCTGAGAGGAAT+TGG 0.304339 6.4:+62143014 MS.gene059535:CDS
TTATATGTTTGTGCATTATC+AGG 0.317579 6.4:-62142884 None:intergenic
AATAGCTATTACCAGCAAAA+TGG 0.320368 6.4:+62143307 MS.gene059535:CDS
CGAAAATAGGAAGCCGGGTT+TGG 0.322982 6.4:+62142997 MS.gene059535:CDS
GGATATAGATCGATCATAAA+AGG 0.329265 6.4:-62142629 None:intergenic
TATTATTACTTGCCAAAGTT+TGG 0.347462 6.4:-62143748 None:intergenic
GAGTCACGGTATGCGTAATA+AGG 0.361223 6.4:-62142650 None:intergenic
GCCAAGTGTCGGCGTTAGTT+TGG 0.366716 6.4:-62142319 None:intergenic
ACCAACTGTGACACCTTATC+AGG 0.370353 6.4:-62142167 None:intergenic
AATGGAAGCAAATCTAGATT+TGG 0.371343 6.4:-62142287 None:intergenic
CTAGGCTGTACACGTTTGTT+AGG 0.371470 6.4:-62143054 None:intergenic
CAACTTCAAATGGAACAAAA+TGG 0.373327 6.4:+62143131 MS.gene059535:CDS
AACTGCATCTACATGAAAAC+CGG 0.376862 6.4:+62143602 MS.gene059535:CDS
GTATAAAGCAAACCAGTGTT+AGG 0.380170 6.4:-62142731 None:intergenic
CTCTCCAACCAAAGTGTCCT+TGG 0.385377 6.4:+62142670 MS.gene059535:CDS
TTTGGAATCTGAGAGGAATT+GGG 0.401173 6.4:+62143015 MS.gene059535:CDS
CTTACAGAATGCGATAAATT+GGG 0.401528 6.4:+62143186 MS.gene059535:CDS
CCCCGGCTTTGCAGGTGTAC+CGG 0.405531 6.4:-62142939 None:intergenic
CATGTAGATGCAGTTGTCAT+AGG 0.410440 6.4:-62143594 None:intergenic
TTCAGGACTTTCTGTAACTT+CGG 0.416209 6.4:-62142402 None:intergenic
GCTACTAGTTCAACTTCAAA+TGG 0.417514 6.4:+62143121 MS.gene059535:CDS
GCATCTGCGGTCATGTCAAC+AGG 0.422571 6.4:-62143094 None:intergenic
ATCTTAGTGGCTGGATAGTA+AGG 0.422818 6.4:-62142359 None:intergenic
GAAACTCCAACAGTGGCTTC+AGG 0.425028 6.4:-62142589 None:intergenic
GGAGTAGCAGCTGTCTCCTT+AGG 0.430476 6.4:-62142863 None:intergenic
AACCGGTACACCTGCAAAGC+CGG 0.434168 6.4:+62142937 MS.gene059535:CDS
GACTGGTGTCCTTGTTGATA+AGG 0.437363 6.4:+62143360 MS.gene059535:CDS
GATAACATGTCTTATCAGAT+TGG 0.437839 6.4:-62142909 None:intergenic
GCATGCGAGACGAAGTTATC+CGG 0.454095 6.4:-62143271 None:intergenic
CTGTACACGTTTGTTAGGTC+CGG 0.458800 6.4:-62143049 None:intergenic
ACCGGTACACCTGCAAAGCC+GGG 0.466058 6.4:+62142938 MS.gene059535:CDS
CGATCGTTCCCTCCTTCCGC+TGG 0.473345 6.4:+62142539 MS.gene059535:CDS
GTGCAGAACTAACCAAACTT+TGG 0.474451 6.4:+62143736 MS.gene059535:intron
AAAGTCATGGTAACCGAGAC+AGG 0.476137 6.4:+62142821 MS.gene059535:CDS
TTATTTCCAGATTGTTGCTA+CGG 0.485694 6.4:+62142095 MS.gene059535:intron
TGCATAGTCCAAGGACACTT+TGG 0.486002 6.4:-62142678 None:intergenic
ACCGGCGTCGAACTTATGAT+TGG 0.486069 6.4:+62142260 MS.gene059535:CDS
TGACCTGCCTCCACCTGATA+AGG 0.493506 6.4:+62142154 MS.gene059535:CDS
GAATTGGGGAATAGTTTATC+CGG 0.496894 6.4:+62143030 MS.gene059535:CDS
AGACATGTTATCAATGAAAC+CGG 0.498567 6.4:+62142920 MS.gene059535:CDS
GACCTCGTCCAGTAAAATCT+AGG 0.500092 6.4:-62143072 None:intergenic
TTGGAATCTGAGAGGAATTG+GGG 0.500877 6.4:+62143016 MS.gene059535:CDS
GTTTCCAGTACTCATTCCCT+TGG 0.501668 6.4:+62142506 MS.gene059535:CDS
TTCAACGAAAATAGGAAGCC+GGG 0.503312 6.4:+62142992 MS.gene059535:CDS
TTCCTCTCAGATTCCAAACC+CGG 0.505442 6.4:-62143010 None:intergenic
TTTCGAAGGCCAACCTGTCT+CGG 0.507082 6.4:-62142834 None:intergenic
ACTTCTTTGCTTGAGGAGGA+TGG 0.509216 6.4:-62143797 None:intergenic
TATTTCCAGATTGTTGCTAC+GGG 0.509756 6.4:+62142096 MS.gene059535:intron
TTTCAGAACGATTAAAGTCA+TGG 0.511255 6.4:+62142808 MS.gene059535:CDS
AACGCCAAGGGAATGAGTAC+TGG 0.512224 6.4:-62142510 None:intergenic
TTAGTTTGGAACTGAGAGAA+TGG 0.514546 6.4:-62142305 None:intergenic
TCCAAACTAACGCCGACACT+TGG 0.516045 6.4:+62142318 MS.gene059535:CDS
GGCTCAAAACAAGGCTGGCT+AGG 0.534132 6.4:-62143250 None:intergenic
GTCCGATATCCAAAAGAAAG+AGG 0.537105 6.4:-62143862 None:intergenic
TCATTTCCTGAAGCCACTGT+TGG 0.538772 6.4:+62142583 MS.gene059535:CDS
TAGTCCAAGGACACTTTGGT+TGG 0.543887 6.4:-62142674 None:intergenic
ACACCTTATCAGGTGGAGGC+AGG 0.545767 6.4:-62142157 None:intergenic
GCAAGGACATTAGTCATGGC+TGG 0.545995 6.4:-62142446 None:intergenic
CGATCGAGACAGAACGCCAA+GGG 0.547405 6.4:-62142522 None:intergenic
GTTCAACGAAAATAGGAAGC+CGG 0.548569 6.4:+62142991 MS.gene059535:CDS
TATCCGGCTCAAAACAAGGC+TGG 0.556154 6.4:-62143255 None:intergenic
GAAGTTATTGATCCTAACAC+TGG 0.557705 6.4:+62142719 MS.gene059535:CDS
AAGTTATCCGGCTCAAAACA+AGG 0.561099 6.4:-62143259 None:intergenic
GTAAACTTCTTTGCTTGAGG+AGG 0.562432 6.4:-62143801 None:intergenic
TAAAAGCACCAGCGGAAGGA+GGG 0.563613 6.4:-62142547 None:intergenic
CGGCTTTCTTGAGTGCTGCA+AGG 0.564241 6.4:-62142463 None:intergenic
GCCTTCGAAAGGTTCACCTA+AGG 0.564951 6.4:+62142847 MS.gene059535:CDS
AAGATCACATACATAACTGT+TGG 0.567480 6.4:+62142377 MS.gene059535:CDS
TCCGCGAGAAACTCCAACAG+TGG 0.570537 6.4:-62142596 None:intergenic
TTGTGGTACTTCTGGAAATG+TGG 0.570623 6.4:+62143210 MS.gene059535:CDS
CTTGCAGCACTCAAGAAAGC+CGG 0.577987 6.4:+62142464 MS.gene059535:CDS
TTAAAAGCACCAGCGGAAGG+AGG 0.580396 6.4:-62142548 None:intergenic
TAAACGTCTAGCTCTTCCCC+CGG 0.583186 6.4:-62142956 None:intergenic
AGGATCAATAACTTCGGAGG+AGG 0.583202 6.4:-62142711 None:intergenic
TCCTTAGGTGAACCTTTCGA+AGG 0.584583 6.4:-62142848 None:intergenic
GAGACAGGTTGGCCTTCGAA+AGG 0.589766 6.4:+62142836 MS.gene059535:CDS
TGAGTAAACTTCTTTGCTTG+AGG 0.590022 6.4:-62143804 None:intergenic
CTATTAAAAGCACCAGCGGA+AGG 0.591719 6.4:-62142551 None:intergenic
CCGGTACACCTGCAAAGCCG+GGG 0.591828 6.4:+62142939 MS.gene059535:CDS
TAGTGGCTGGATAGTAAGGA+AGG 0.592250 6.4:-62142355 None:intergenic
ACCTGATAAGGTGTCACAGT+TGG 0.594346 6.4:+62142166 MS.gene059535:CDS
TAGAGAGAACAATGGCAAGA+GGG 0.597917 6.4:+62140728 None:intergenic
AACTGTGACACCTTATCAGG+TGG 0.598360 6.4:-62142164 None:intergenic
GCCACTGTTGGAGTTTCTCG+CGG 0.601749 6.4:+62142595 MS.gene059535:CDS
ATGTATGTGATCTTAGTGGC+TGG 0.602804 6.4:-62142368 None:intergenic
ATAGAGAGAACAATGGCAAG+AGG 0.613986 6.4:+62140727 None:intergenic
AGTTATGTATGTGATCTTAG+TGG 0.615030 6.4:-62142372 None:intergenic
ACACTTTGGTTGGAGAGTCA+CGG 0.616571 6.4:-62142664 None:intergenic
ACTAGTAGCATTTGCATCTG+CGG 0.616757 6.4:-62143107 None:intergenic
TGTGACACCTTATCAGGTGG+AGG 0.617208 6.4:-62142161 None:intergenic
TCATGGTAACCGAGACAGGT+TGG 0.619747 6.4:+62142825 MS.gene059535:CDS
CTCGAACAATGCATAGTCCA+AGG 0.625466 6.4:-62142687 None:intergenic
ACGATCGAGACAGAACGCCA+AGG 0.632161 6.4:-62142523 None:intergenic
ACTATTTCTCAGCCAAGTGT+CGG 0.633481 6.4:-62142330 None:intergenic
AGTGTTAGGATCAATAACTT+CGG 0.634976 6.4:-62142717 None:intergenic
TCTTTGCTTGAGGAGGATGG+AGG 0.637032 6.4:-62143794 None:intergenic
AATGCGATAAATTGGGCTTG+TGG 0.638491 6.4:+62143193 MS.gene059535:CDS
ACTGCATCTACATGAAAACC+GGG 0.646494 6.4:+62143603 MS.gene059535:CDS
TCCAATCATAAGTTCGACGC+CGG 0.648715 6.4:-62142261 None:intergenic
GTTAGGATCAATAACTTCGG+AGG 0.650725 6.4:-62142714 None:intergenic
CGGTACACCTGCAAAGCCGG+GGG 0.653266 6.4:+62142940 MS.gene059535:CDS
CTTGCTATTAAAAGCACCAG+CGG 0.664710 6.4:-62142555 None:intergenic
TGCTGCAAGGACATTAGTCA+TGG 0.668003 6.4:-62142450 None:intergenic
TACTTGGATCCTTATCAACA+AGG 0.678577 6.4:-62143369 None:intergenic
AGCCGGGTTTGGAATCTGAG+AGG 0.695818 6.4:+62143008 MS.gene059535:CDS
TTTGGCAAGTAATAATACAA+CGG 0.699486 6.4:+62143754 MS.gene059535:CDS
GGCAAGTAATAATACAACGG+CGG 0.707057 6.4:+62143757 MS.gene059535:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATAAAGTTATTTATGTT+TGG + chr6.4:62141459-62141478 MS.gene059535:intron 10.0%
!! ATAATTCATTGTAATTATAT+GGG - chr6.4:62141318-62141337 None:intergenic 10.0%
!!! AAAAGAAAAAACTATATTTT+TGG + chr6.4:62141681-62141700 MS.gene059535:intron 10.0%
!! AAAGAAAATTAATTAAGTGA+TGG - chr6.4:62143405-62143424 None:intergenic 15.0%
!! AAGAAAATTAATTAAGTGAT+GGG - chr6.4:62143404-62143423 None:intergenic 15.0%
!! CATAATTCATTGTAATTATA+TGG - chr6.4:62141319-62141338 None:intergenic 15.0%
!!! TTTTAGGTTTAATATGTTTA+TGG + chr6.4:62143478-62143497 MS.gene059535:intron 15.0%
!! ACGCATAATATAACAATTTA+CGG - chr6.4:62143668-62143687 None:intergenic 20.0%
!! TATACGAAAAAACAGAAAAA+GGG - chr6.4:62143429-62143448 None:intergenic 20.0%
!! TTTCTTCTATTTGATCTTTA+TGG + chr6.4:62142031-62142050 MS.gene059535:intron 20.0%
!!! AGATTTTCTCAAATTATTAG+CGG + chr6.4:62141339-62141358 MS.gene059535:intron 20.0%
!!! TTTTAGTTAATCATGCTAAA+TGG - chr6.4:62141734-62141753 None:intergenic 20.0%
! AAATCATCTACACATATTAC+AGG - chr6.4:62143506-62143525 None:intergenic 25.0%
! AAATGGAACAAAAGTAGTTT+AGG - chr6.4:62141717-62141736 None:intergenic 25.0%
! AATCATCTACACATATTACA+GGG - chr6.4:62143505-62143524 None:intergenic 25.0%
! ATAATCAGTTTCATTTCATG+TGG + chr6.4:62141143-62141162 MS.gene059535:intron 25.0%
! GTATACGAAAAAACAGAAAA+AGG - chr6.4:62143430-62143449 None:intergenic 25.0%
! TAGACATTAATCTCATTAAG+TGG + chr6.4:62141115-62141134 MS.gene059535:intron 25.0%
! TATTATTACTTGCCAAAGTT+TGG - chr6.4:62143751-62143770 None:intergenic 25.0%
! TATTCAAAATCTATGAAGCA+CGG - chr6.4:62141400-62141419 None:intergenic 25.0%
! TTATATGTTTGTGCATTATC+AGG - chr6.4:62142887-62142906 None:intergenic 25.0%
! TTCATTGTAATTATATGGGT+CGG - chr6.4:62141314-62141333 None:intergenic 25.0%
! TTTATGGAAAACATGAGAAA+TGG + chr6.4:62141028-62141047 MS.gene059535:intron 25.0%
! TTTGGCAAGTAATAATACAA+CGG + chr6.4:62143754-62143773 MS.gene059535:CDS 25.0%
!! AAAACAAAGCTTTGTAACAT+CGG + chr6.4:62141750-62141769 MS.gene059535:intron 25.0%
!! ATTTCTCATGTTTTCCATAA+AGG - chr6.4:62141029-62141048 None:intergenic 25.0%
!! TTTCTCATGTTTTCCATAAA+GGG - chr6.4:62141028-62141047 None:intergenic 25.0%
!! TTTTATCTTCTTATGAAGTC+CGG - chr6.4:62142486-62142505 None:intergenic 25.0%
!!! TGCAATTTATTTTGCGTTAA+CGG + chr6.4:62142778-62142797 MS.gene059535:CDS 25.0%
AAATGGAAGACTTCTAAGTT+TGG + chr6.4:62141045-62141064 MS.gene059535:intron 30.0%
AAGATCACATACATAACTGT+TGG + chr6.4:62142377-62142396 MS.gene059535:CDS 30.0%
AATAGCTATTACCAGCAAAA+TGG + chr6.4:62143307-62143326 MS.gene059535:CDS 30.0%
AATGGAAGCAAATCTAGATT+TGG - chr6.4:62142290-62142309 None:intergenic 30.0%
ACTTACAGAATGCGATAAAT+TGG + chr6.4:62143185-62143204 MS.gene059535:CDS 30.0%
AGACATGTTATCAATGAAAC+CGG + chr6.4:62142920-62142939 MS.gene059535:CDS 30.0%
AGTGTTAGGATCAATAACTT+CGG - chr6.4:62142720-62142739 None:intergenic 30.0%
AGTTATGTATGTGATCTTAG+TGG - chr6.4:62142375-62142394 None:intergenic 30.0%
CAACTTCAAATGGAACAAAA+TGG + chr6.4:62143131-62143150 MS.gene059535:CDS 30.0%
CTTACAGAATGCGATAAATT+GGG + chr6.4:62143186-62143205 MS.gene059535:CDS 30.0%
GATAACATGTCTTATCAGAT+TGG - chr6.4:62142912-62142931 None:intergenic 30.0%
GGATATAGATCGATCATAAA+AGG - chr6.4:62142632-62142651 None:intergenic 30.0%
TAACTCACATTTGAGAGATT+TGG + chr6.4:62141643-62141662 MS.gene059535:intron 30.0%
TTATTTCCAGATTGTTGCTA+CGG + chr6.4:62142095-62142114 MS.gene059535:intron 30.0%
TTCAGTCCTTGAAAATTTCT+TGG + chr6.4:62143630-62143649 MS.gene059535:intron 30.0%
TTTCAGAACGATTAAAGTCA+TGG + chr6.4:62142808-62142827 MS.gene059535:CDS 30.0%
! AACATCGGTTAAGAATTTGT+TGG + chr6.4:62141765-62141784 MS.gene059535:intron 30.0%
! AACCAACCAAGAAATTTTCA+AGG - chr6.4:62143639-62143658 None:intergenic 30.0%
! ACTAATGCAGAAATGTTTTC+AGG - chr6.4:62142422-62142441 None:intergenic 30.0%
! ACTTTTTGTTGCATGTTTCT+TGG + chr6.4:62140923-62140942 MS.gene059535:intron 30.0%
! CTAAAATCTTTTGCAAACAC+CGG + chr6.4:62142242-62142261 MS.gene059535:CDS 30.0%
! TACTTTTGTTGCATGTTTCT+TGG + chr6.4:62140851-62140870 MS.gene059535:intron 30.0%
! TTTGGAACTAGATAGAAGAT+AGG + chr6.4:62141063-62141082 MS.gene059535:intron 30.0%
AACTGCATCTACATGAAAAC+CGG + chr6.4:62143602-62143621 MS.gene059535:CDS 35.0%
ATAACTGAACACACACTACA+TGG - chr6.4:62141198-62141217 None:intergenic 35.0%
ATGGAACAAATGTGGTTGTA+GGG - chr6.4:62141853-62141872 None:intergenic 35.0%
CACTCGAATGAATGTAATGT+TGG + chr6.4:62141922-62141941 MS.gene059535:intron 35.0%
CGAATGAATGTAATGTTGGT+TGG + chr6.4:62141926-62141945 MS.gene059535:intron 35.0%
GAAGTTATTGATCCTAACAC+TGG + chr6.4:62142719-62142738 MS.gene059535:CDS 35.0%
GAATTGGGGAATAGTTTATC+CGG + chr6.4:62143030-62143049 MS.gene059535:CDS 35.0%
GCTACTAGTTCAACTTCAAA+TGG + chr6.4:62143121-62143140 MS.gene059535:CDS 35.0%
GTATAAAGCAAACCAGTGTT+AGG - chr6.4:62142734-62142753 None:intergenic 35.0%
GTCCTTGAAAATTTCTTGGT+TGG + chr6.4:62143634-62143653 MS.gene059535:intron 35.0%
TACATTCATTCGAGTGAAAC+TGG - chr6.4:62141918-62141937 None:intergenic 35.0%
TACTTGGATCCTTATCAACA+AGG - chr6.4:62143372-62143391 None:intergenic 35.0%
TATTTCCAGATTGTTGCTAC+GGG + chr6.4:62142096-62142115 MS.gene059535:intron 35.0%
TCTCAAATTATTAGCGGTGT+TGG + chr6.4:62141345-62141364 MS.gene059535:intron 35.0%
TGAGTAAACTTCTTTGCTTG+AGG - chr6.4:62143807-62143826 None:intergenic 35.0%
TGATGGGATATGAACATACT+TGG - chr6.4:62143388-62143407 None:intergenic 35.0%
TTCAGGACTTTCTGTAACTT+CGG - chr6.4:62142405-62142424 None:intergenic 35.0%
TTTATGTTTGGATACACTCG+TGG + chr6.4:62141471-62141490 MS.gene059535:intron 35.0%
TTTCGCTGTTCAACGAAAAT+AGG + chr6.4:62142984-62143003 MS.gene059535:CDS 35.0%
! ACTACATGGTTGGTTAATGA+TGG - chr6.4:62141184-62141203 None:intergenic 35.0%
! CTCCTCTTTCTTTTGGATAT+CGG + chr6.4:62143860-62143879 MS.gene059535:CDS 35.0%
! GATCTTTCTCCTCTTTCTTT+TGG + chr6.4:62143853-62143872 MS.gene059535:CDS 35.0%
! TCAGTTTTGCTTATGCTTCT+TGG + chr6.4:62140775-62140794 MS.gene059535:CDS 35.0%
! TTAGTTTGGAACTGAGAGAA+TGG - chr6.4:62142308-62142327 None:intergenic 35.0%
! TTTGGAATCTGAGAGGAATT+GGG + chr6.4:62143015-62143034 MS.gene059535:CDS 35.0%
!! GTTAAGCTTGTTACCCTTTA+TGG + chr6.4:62141012-62141031 MS.gene059535:intron 35.0%
!! TCTGATGTTGCTTGTAGTTT+TGG + chr6.4:62143334-62143353 MS.gene059535:CDS 35.0%
!!! AGTTTTGTCGGAATTTGCTA+TGG + chr6.4:62142119-62142138 MS.gene059535:CDS 35.0%
!!! ATGTTGCTTGTAGTTTTGGA+GGG + chr6.4:62143338-62143357 MS.gene059535:CDS 35.0%
!!! CAGCTATTGCATGGTTTTTT+AGG + chr6.4:62143462-62143481 MS.gene059535:intron 35.0%
AAGTTATCCGGCTCAAAACA+AGG - chr6.4:62143262-62143281 None:intergenic 40.0%
AATGCGATAAATTGGGCTTG+TGG + chr6.4:62143193-62143212 MS.gene059535:CDS 40.0%
ACTAGTAGCATTTGCATCTG+CGG - chr6.4:62143110-62143129 None:intergenic 40.0%
ACTGCATCTACATGAAAACC+GGG + chr6.4:62143603-62143622 MS.gene059535:CDS 40.0%
ATCTTAGTGGCTGGATAGTA+AGG - chr6.4:62142362-62142381 None:intergenic 40.0%
ATGTATGTGATCTTAGTGGC+TGG - chr6.4:62142371-62142390 None:intergenic 40.0%
CATGTAGATGCAGTTGTCAT+AGG - chr6.4:62143597-62143616 None:intergenic 40.0%
GATGGAACAAATGTGGTTGT+AGG - chr6.4:62141854-62141873 None:intergenic 40.0%
GGCAAGTAATAATACAACGG+CGG + chr6.4:62143757-62143776 MS.gene059535:CDS 40.0%
GTAAACTTCTTTGCTTGAGG+AGG - chr6.4:62143804-62143823 None:intergenic 40.0%
GTAATTATATGGGTCGGTGT+CGG - chr6.4:62141308-62141327 None:intergenic 40.0%
GTAGTGTGTGTTCAGTTATG+CGG + chr6.4:62141199-62141218 MS.gene059535:intron 40.0%
GTCCGATATCCAAAAGAAAG+AGG - chr6.4:62143865-62143884 None:intergenic 40.0%
GTGCAGAACTAACCAAACTT+TGG + chr6.4:62143736-62143755 MS.gene059535:intron 40.0%
GTTAGGATCAATAACTTCGG+AGG - chr6.4:62142717-62142736 None:intergenic 40.0%
GTTCAACGAAAATAGGAAGC+CGG + chr6.4:62142991-62143010 MS.gene059535:CDS 40.0%
TAGTGTGTGTTCAGTTATGC+GGG + chr6.4:62141200-62141219 MS.gene059535:intron 40.0%
TGGAACAAATGTGGTTGTAG+GGG - chr6.4:62141852-62141871 None:intergenic 40.0%
TGTCACTATCGTACGAATGT+TGG - chr6.4:62141529-62141548 None:intergenic 40.0%
TTCAACGAAAATAGGAAGCC+GGG + chr6.4:62142992-62143011 MS.gene059535:CDS 40.0%
TTGGAATCTGAGAGGAATTG+GGG + chr6.4:62143016-62143035 MS.gene059535:CDS 40.0%
TTTCAAGGACTGAACTTACC+CGG - chr6.4:62143624-62143643 None:intergenic 40.0%
! AAGAGGGTTTTGCTTCATCT+TGG + chr6.4:62140744-62140763 MS.gene059535:CDS 40.0%
! ACTATTTCTCAGCCAAGTGT+CGG - chr6.4:62142333-62142352 None:intergenic 40.0%
! GTGTACAGCCTAGATTTTAC+TGG + chr6.4:62143064-62143083 MS.gene059535:CDS 40.0%
! GTTTGGAATCTGAGAGGAAT+TGG + chr6.4:62143014-62143033 MS.gene059535:CDS 40.0%
! TTGTGGTACTTCTGGAAATG+TGG + chr6.4:62143210-62143229 MS.gene059535:CDS 40.0%
!! CTTGCTATTAAAAGCACCAG+CGG - chr6.4:62142558-62142577 None:intergenic 40.0%
!!! GATGTTGCTTGTAGTTTTGG+AGG + chr6.4:62143337-62143356 MS.gene059535:CDS 40.0%
AAACTCCCGTAGCAACAATC+TGG - chr6.4:62142104-62142123 None:intergenic 45.0%
AAAGTCATGGTAACCGAGAC+AGG + chr6.4:62142821-62142840 MS.gene059535:CDS 45.0%
AACTGTGACACCTTATCAGG+TGG - chr6.4:62142167-62142186 None:intergenic 45.0%
AATCTATGAAGCACGGACAC+TGG - chr6.4:62141393-62141412 None:intergenic 45.0%
AATTGGGCTTGTGGTACTTC+TGG + chr6.4:62143202-62143221 MS.gene059535:CDS 45.0%
ACACGACATGTGTCTGACAA+CGG - chr6.4:62141279-62141298 None:intergenic 45.0%
ACACTTTGGTTGGAGAGTCA+CGG - chr6.4:62142667-62142686 None:intergenic 45.0%
ACAGACACTCCTCGAATTAC+AGG + chr6.4:62141249-62141268 MS.gene059535:intron 45.0%
ACCAACTGTGACACCTTATC+AGG - chr6.4:62142170-62142189 None:intergenic 45.0%
ACGAATGTCAGTCAACGACA+TGG - chr6.4:62141795-62141814 None:intergenic 45.0%
ACTTCTTTGCTTGAGGAGGA+TGG - chr6.4:62143800-62143819 None:intergenic 45.0%
AGGATCAATAACTTCGGAGG+AGG - chr6.4:62142714-62142733 None:intergenic 45.0%
AGTGTGTGTTCAGTTATGCG+GGG + chr6.4:62141201-62141220 MS.gene059535:intron 45.0%
CATTCGAGTGAAACTGGACT+CGG - chr6.4:62141912-62141931 None:intergenic 45.0%
CCACATTTGTTCCATCGACA+AGG + chr6.4:62141858-62141877 MS.gene059535:intron 45.0%
CCTTGTCGATGGAACAAATG+TGG - chr6.4:62141861-62141880 None:intergenic 45.0%
CTAGGCTGTACACGTTTGTT+AGG - chr6.4:62143057-62143076 None:intergenic 45.0%
CTCGAACAATGCATAGTCCA+AGG - chr6.4:62142690-62142709 None:intergenic 45.0%
CTGAACACACACTACATGGT+TGG - chr6.4:62141194-62141213 None:intergenic 45.0%
GACCTCGTCCAGTAAAATCT+AGG - chr6.4:62143075-62143094 None:intergenic 45.0%
GACTGGTGTCCTTGTTGATA+AGG + chr6.4:62143360-62143379 MS.gene059535:CDS 45.0%
GAGTCACGGTATGCGTAATA+AGG - chr6.4:62142653-62142672 None:intergenic 45.0%
GTTTCCAGTACTCATTCCCT+TGG + chr6.4:62142506-62142525 MS.gene059535:CDS 45.0%
TAAACCCTATGAGACACCGT+CGG - chr6.4:62141625-62141644 None:intergenic 45.0%
TAGTCCAAGGACACTTTGGT+TGG - chr6.4:62142677-62142696 None:intergenic 45.0%
TAGTGGCTGGATAGTAAGGA+AGG - chr6.4:62142358-62142377 None:intergenic 45.0%
TCATTTCCTGAAGCCACTGT+TGG + chr6.4:62142583-62142602 MS.gene059535:CDS 45.0%
TCCAATCATAAGTTCGACGC+CGG - chr6.4:62142264-62142283 None:intergenic 45.0%
TCCTTAGGTGAACCTTTCGA+AGG - chr6.4:62142851-62142870 None:intergenic 45.0%
TCGTGGACACTTCAGTTTGA+AGG + chr6.4:62141488-62141507 MS.gene059535:intron 45.0%
TCTACAAAAGGTGGTCAACC+AGG - chr6.4:62141825-62141844 None:intergenic 45.0%
TCTTCTCAGCAGCTATTGCA+TGG + chr6.4:62143453-62143472 MS.gene059535:intron 45.0%
TGCATAGTCCAAGGACACTT+TGG - chr6.4:62142681-62142700 None:intergenic 45.0%
TGCTGCAAGGACATTAGTCA+TGG - chr6.4:62142453-62142472 None:intergenic 45.0%
TGTAGGGGAGACTCTACAAA+AGG - chr6.4:62141837-62141856 None:intergenic 45.0%
TTCCTCTCAGATTCCAAACC+CGG - chr6.4:62143013-62143032 None:intergenic 45.0%
! ACCTGATAAGGTGTCACAGT+TGG + chr6.4:62142166-62142185 MS.gene059535:CDS 45.0%
! AGCCTAGATTTTACTGGACG+AGG + chr6.4:62143070-62143089 MS.gene059535:CDS 45.0%
! CTGTACACGTTTGTTAGGTC+CGG - chr6.4:62143052-62143071 None:intergenic 45.0%
! GTCGTTGACTGACATTCGTT+GGG + chr6.4:62141796-62141815 MS.gene059535:intron 45.0%
! TCGTTGACTGACATTCGTTG+GGG + chr6.4:62141797-62141816 MS.gene059535:intron 45.0%
! TGTCGTTGACTGACATTCGT+TGG + chr6.4:62141795-62141814 MS.gene059535:intron 45.0%
!! CTATTAAAAGCACCAGCGGA+AGG - chr6.4:62142554-62142573 None:intergenic 45.0%
!! TGTTGCTACGGGAGTTTTGT+CGG + chr6.4:62142107-62142126 MS.gene059535:CDS 45.0%
!!! CATCAGAAGCACCATTTTGC+TGG - chr6.4:62143321-62143340 None:intergenic 45.0%
AACGCCAAGGGAATGAGTAC+TGG - chr6.4:62142513-62142532 None:intergenic 50.0%
AACGGGACACCTGTAATTCG+AGG - chr6.4:62141261-62141280 None:intergenic 50.0%
AGGGGAGACTCTACAAAAGG+TGG - chr6.4:62141834-62141853 None:intergenic 50.0%
CACGACATGTGTCTGACAAC+GGG - chr6.4:62141278-62141297 None:intergenic 50.0%
CGAAAATAGGAAGCCGGGTT+TGG + chr6.4:62142997-62143016 MS.gene059535:CDS 50.0%
CTTGCAGCACTCAAGAAAGC+CGG + chr6.4:62142464-62142483 MS.gene059535:CDS 50.0%
GAAACTCCAACAGTGGCTTC+AGG - chr6.4:62142592-62142611 None:intergenic 50.0%
GCAAGGACATTAGTCATGGC+TGG - chr6.4:62142449-62142468 None:intergenic 50.0%
GCATGCGAGACGAAGTTATC+CGG - chr6.4:62143274-62143293 None:intergenic 50.0%
GCCTTCGAAAGGTTCACCTA+AGG + chr6.4:62142847-62142866 MS.gene059535:CDS 50.0%
TATCCGGCTCAAAACAAGGC+TGG - chr6.4:62143258-62143277 None:intergenic 50.0%
TCATGGTAACCGAGACAGGT+TGG + chr6.4:62142825-62142844 MS.gene059535:CDS 50.0%
TCCAAACTAACGCCGACACT+TGG + chr6.4:62142318-62142337 MS.gene059535:CDS 50.0%
TCTTTGCTTGAGGAGGATGG+AGG - chr6.4:62143797-62143816 None:intergenic 50.0%
TGTGACACCTTATCAGGTGG+AGG - chr6.4:62142164-62142183 None:intergenic 50.0%
TTTCGAAGGCCAACCTGTCT+CGG - chr6.4:62142837-62142856 None:intergenic 50.0%
! ACCGGCGTCGAACTTATGAT+TGG + chr6.4:62142260-62142279 MS.gene059535:CDS 50.0%
! CTCTCCAACCAAAGTGTCCT+TGG + chr6.4:62142670-62142689 MS.gene059535:CDS 50.0%
!! TAAAAGCACCAGCGGAAGGA+GGG - chr6.4:62142550-62142569 None:intergenic 50.0%
!! TAAACGTCTAGCTCTTCCCC+CGG - chr6.4:62142959-62142978 None:intergenic 50.0%
!! TTAAAAGCACCAGCGGAAGG+AGG - chr6.4:62142551-62142570 None:intergenic 50.0%
!!! GCTTGTAGTTTTGGAGGGAC+TGG + chr6.4:62143343-62143362 MS.gene059535:CDS 50.0%
!!! TAGCCAGCCTTGTTTTGAGC+CGG + chr6.4:62143252-62143271 MS.gene059535:CDS 50.0%
AACCGGTACACCTGCAAAGC+CGG + chr6.4:62142937-62142956 MS.gene059535:CDS 55.0%
ACACCTTATCAGGTGGAGGC+AGG - chr6.4:62142160-62142179 None:intergenic 55.0%
ACGATCGAGACAGAACGCCA+AGG - chr6.4:62142526-62142545 None:intergenic 55.0%
CGATCGAGACAGAACGCCAA+GGG - chr6.4:62142525-62142544 None:intergenic 55.0%
CTATGAGACACCGTCGGACT+CGG - chr6.4:62141619-62141638 None:intergenic 55.0%
CTGACATTCGTTGGGGAACC+TGG + chr6.4:62141804-62141823 MS.gene059535:intron 55.0%
GAGTCCGACGGTGTCTCATA+GGG + chr6.4:62141618-62141637 MS.gene059535:intron 55.0%
GCATCTGCGGTCATGTCAAC+AGG - chr6.4:62143097-62143116 None:intergenic 55.0%
GCCACTGTTGGAGTTTCTCG+CGG + chr6.4:62142595-62142614 MS.gene059535:CDS 55.0%
GGAGTAGCAGCTGTCTCCTT+AGG - chr6.4:62142866-62142885 None:intergenic 55.0%
TCCGCGAGAAACTCCAACAG+TGG - chr6.4:62142599-62142618 None:intergenic 55.0%
TGACCTGCCTCCACCTGATA+AGG + chr6.4:62142154-62142173 MS.gene059535:CDS 55.0%
TTGTGTGTGTCCGAGTCCGA+CGG + chr6.4:62141606-62141625 MS.gene059535:intron 55.0%
! AGCCGGGTTTGGAATCTGAG+AGG + chr6.4:62143008-62143027 MS.gene059535:CDS 55.0%
! CGGCTTTCTTGAGTGCTGCA+AGG - chr6.4:62142466-62142485 None:intergenic 55.0%
! GGCTCAAAACAAGGCTGGCT+AGG - chr6.4:62143253-62143272 None:intergenic 55.0%
!! GAGACAGGTTGGCCTTCGAA+AGG + chr6.4:62142836-62142855 MS.gene059535:CDS 55.0%
!! GCCAAGTGTCGGCGTTAGTT+TGG - chr6.4:62142322-62142341 None:intergenic 55.0%
ACCGGTACACCTGCAAAGCC+GGG + chr6.4:62142938-62142957 MS.gene059535:CDS 60.0%
CACGGACACTGGACACGACA+CGG - chr6.4:62141382-62141401 None:intergenic 60.0%
CGAGTCCGACGGTGTCTCAT+AGG + chr6.4:62141617-62141636 MS.gene059535:intron 60.0%
! TCGTGTGCGAGCCTTGTCGA+TGG - chr6.4:62141872-62141891 None:intergenic 60.0%
AGCTCTTCCCCCGGCTTTGC+AGG - chr6.4:62142950-62142969 None:intergenic 65.0%
CCCCGGCTTTGCAGGTGTAC+CGG - chr6.4:62142942-62142961 None:intergenic 65.0%
CCGGTACACCTGCAAAGCCG+GGG + chr6.4:62142939-62142958 MS.gene059535:CDS 65.0%
CGATCGTTCCCTCCTTCCGC+TGG + chr6.4:62142539-62142558 MS.gene059535:CDS 65.0%
CGGTACACCTGCAAAGCCGG+GGG + chr6.4:62142940-62142959 MS.gene059535:CDS 65.0%


Chromosome Type Strat End Strand Name
chr6.4 gene 62140739 62143892 62140739 ID=MS.gene059535
chr6.4 mRNA 62140739 62143892 62140739 ID=MS.gene059535.t1;Parent=MS.gene059535
chr6.4 exon 62140739 62140796 62140739 ID=MS.gene059535.t1.exon1;Parent=MS.gene059535.t1
chr6.4 CDS 62140739 62140796 62140739 ID=cds.MS.gene059535.t1;Parent=MS.gene059535.t1
chr6.4 exon 62142105 62143388 62142105 ID=MS.gene059535.t1.exon2;Parent=MS.gene059535.t1
chr6.4 CDS 62142105 62143388 62142105 ID=cds.MS.gene059535.t1;Parent=MS.gene059535.t1
chr6.4 exon 62143594 62143624 62143594 ID=MS.gene059535.t1.exon3;Parent=MS.gene059535.t1
chr6.4 CDS 62143594 62143624 62143594 ID=cds.MS.gene059535.t1;Parent=MS.gene059535.t1
chr6.4 exon 62143742 62143892 62143742 ID=MS.gene059535.t1.exon4;Parent=MS.gene059535.t1
chr6.4 CDS 62143742 62143892 62143742 ID=cds.MS.gene059535.t1;Parent=MS.gene059535.t1
Gene Sequence

>MS.gene059535

ATGGCAAGAGGGTTTTGCTTCATCTTGGTTGTTGCTTCAGTTTTGCTTATGCTTCTTGGTTTGTTCTTCTTTCTCTTTCTATGAACACTTTGCATTATGTTTATGATCTAAGTACTTTTGTTGCATGTTTCTTGGTTCATCATGTTTTTATGTTGTGTTTTTTGTAATGTACTTGTTTCTAAGTACTTTTTGTTGCATGTTTCTTGGTTCATGATGTCACTATTTTCTCATAGCTATATTTTCTCTCAATTTTTTTTAAAAGTTGTTTGTGATGTTAAGCTTGTTACCCTTTATGGAAAACATGAGAAATGGAAGACTTCTAAGTTTGGAACTAGATAGAAGATAGGTCAAAAGCTGTTTCTAATGTTATTGTTCATAGACATTAATCTCATTAAGTGGCTTGCATAATCAGTTTCATTTCATGTGGATCTAACTTTTCTAACCATCATTAACCAACCATGTAGTGTGTGTTCAGTTATGCGGGGACAAAACTTGATTTTGAACTGAAGCACAGACACTCCTCGAATTACAGGTGTCCCGTTGTCAGACACATGTCGTGTCTGACACCGACACCGACCCATATAATTACAATGAATTATGAGATTTTCTCAAATTATTAGCGGTGTTGGCATGTCAGTGTCCGTGTCGTGTCCAGTGTCCGTGCTTCATAGATTTTGAATAATTAATTATGTAAAATTGATTCTGCTTAAAAATGAGTTGAATATAAAGTTATTTATGTTTGGATACACTCGTGGACACTTCAGTTTGAAGGCGCGTCTGCGTGTGTCCAACATTCGTACGATAGTGACACATAATCACTTTCATTTTCTTAAATTTCTATTTACTACTATGTCTACATATCAGTGTTTGTGTGTGTCCGAGTCCGACGGTGTCTCATAGGGTTTAACTCACATTTGAGAGATTTGGTTTTGATTTTGTAAAAAAAGAAAAAACTATATTTTTGGATATATCAAGCCTAAACTACTTTTGTTCCATTTAGCATGATTAACTAAAACAAAGCTTTGTAACATCGGTTAAGAATTTGTTGGCTAACCATGTCGTTGACTGACATTCGTTGGGGAACCTGGTTGACCACCTTTTGTAGAGTCTCCCCTACAACCACATTTGTTCCATCGACAAGGCTCGCACACGAAATATTACTTAAGAGATCCGAGTCCAGTTTCACTCGAATGAATGTAATGTTGGTTGGTTAAGAATTTGATACTGAAATAATTGCAAATTAATAAATTGTTGTTTTGACTTGCAGATACTATTCTCAATTGTAATTCTTATTTCTTCTATTTGATCTTTATGGAATTTTGTAATTCTTATTTATTTTATTTGATTTTTATGAATTTATTTCCAGATTGTTGCTACGGGAGTTTTGTCGGAATTTGCTATGGAAGAAATGCTGATGACCTGCCTCCACCTGATAAGGTGTCACAGTTGGTTCAAGAACACAAAATCAAATATGTCAGAATTTACGATTCTAACATACAAGTTCTAAAATCTTTTGCAAACACCGGCGTCGAACTTATGATTGGAATTCCAAATCTAGATTTGCTTCCATTCTCTCAGTTCCAAACTAACGCCGACACTTGGCTGAGAAATAGTATCCTTCCTTACTATCCAGCCACTAAGATCACATACATAACTGTTGGCGCCGAAGTTACAGAAAGTCCTGAAAACATTTCTGCATTAGTCGTGCCAGCCATGACTAATGTCCTTGCAGCACTCAAGAAAGCCGGACTTCATAAGAAGATAAAAGTTTCCAGTACTCATTCCCTTGGCGTTCTGTCTCGATCGTTCCCTCCTTCCGCTGGTGCTTTTAATAGCAAGCATGCTCATTTCCTGAAGCCACTGTTGGAGTTTCTCGCGGAAAATCAATCACCTTTTATGATCGATCTATATCCTTATTACGCATACCGTGACTCTCCAACCAAAGTGTCCTTGGACTATGCATTGTTCGAGTCCTCCTCCGAAGTTATTGATCCTAACACTGGTTTGCTTTATACAAACATGTTTGATGCTCAGATTGATGCAATTTATTTTGCGTTAACGGCGTTGAATTTCAGAACGATTAAAGTCATGGTAACCGAGACAGGTTGGCCTTCGAAAGGTTCACCTAAGGAGACAGCTGCTACTCCTGATAATGCACAAACATATAATACCAATCTGATAAGACATGTTATCAATGAAACCGGTACACCTGCAAAGCCGGGGGAAGAGCTAGACGTTTACATATTTTCGCTGTTCAACGAAAATAGGAAGCCGGGTTTGGAATCTGAGAGGAATTGGGGAATAGTTTATCCGGACCTAACAAACGTGTACAGCCTAGATTTTACTGGACGAGGTCCTGTTGACATGACCGCAGATGCAAATGCTACTAGTTCAACTTCAAATGGAACAAAATGGTGCATTGCTTCGAGTAATGCAACACAACTTGACTTACAGAATGCGATAAATTGGGCTTGTGGTACTTCTGGAAATGTGGACTGTACTGCTATTCAGCCTAGCCAGCCTTGTTTTGAGCCGGATAACTTCGTCTCGCATGCTTCATATGCTTTTAATAGCTATTACCAGCAAAATGGTGCTTCTGATGTTGCTTGTAGTTTTGGAGGGACTGGTGTCCTTGTTGATAAGGATCCAAGTATGTTCATATCCCATCACTTAATTAATTTTCTTTTCCCTTTTTCTGTTTTTTCGTATACTTATCTTCTCAGCAGCTATTGCATGGTTTTTTAGGTTTAATATGTTTATGGTCCCTGTAATATGTGTAGATGATTTATTATTGCTACAGCATTTCTGTAGACTGTTTTGCTTACTGAACAAACTATTTGTTTACGATTTTGCAGCCTATGACAACTGCATCTACATGAAAACCGGGTAAGTTCAGTCCTTGAAAATTTCTTGGTTGGTTTTATGTCCGTAAATTGTTATATTATGCGTTATCGTTAAAAGCATGACATACATTTGAGTTTTCTCTCTCTTGTTTTTGTGCAGAACTAACCAAACTTTGGCAAGTAATAATACAACGGCGGCATCGATATCTTCACCTCCATCCTCCTCAAGCAAAGAAGTTTACTCATCGATCTCTACTAGTGCTCTTCTTTTGATCTTTCTCCTCTTTCTTTTGGATATCGGACAAGCCTAA
Protein sequence

>MS.gene059535.t1

MARGFCFILVVASVLLMLLDCCYGSFVGICYGRNADDLPPPDKVSQLVQEHKIKYVRIYDSNIQVLKSFANTGVELMIGIPNLDLLPFSQFQTNADTWLRNSILPYYPATKITYITVGAEVTESPENISALVVPAMTNVLAALKKAGLHKKIKVSSTHSLGVLSRSFPPSAGAFNSKHAHFLKPLLEFLAENQSPFMIDLYPYYAYRDSPTKVSLDYALFESSSEVIDPNTGLLYTNMFDAQIDAIYFALTALNFRTIKVMVTETGWPSKGSPKETAATPDNAQTYNTNLIRHVINETGTPAKPGEELDVYIFSLFNENRKPGLESERNWGIVYPDLTNVYSLDFTGRGPVDMTADANATSSTSNGTKWCIASSNATQLDLQNAINWACGTSGNVDCTAIQPSQPCFEPDNFVSHASYAFNSYYQQNGASDVACSFGGTGVLVDKDPTYDNCIYMKTGTNQTLASNNTTAASISSPPSSSSKEVYSSISTSALLLIFLLFLLDIGQA