AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene059805

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059805.t1 MTR_2g085280 95.299 234 11 0 1 234 1 234 7.24e-169 465
MS.gene059805.t1 MTR_2g085250 95.299 234 11 0 1 234 1 234 2.64e-168 463
MS.gene059805.t1 MTR_5g055100 81.624 234 43 0 1 234 1 234 6.74e-142 397
MS.gene059805.t1 MTR_5g045560 76.856 229 53 0 1 229 1 229 3.66e-125 354
MS.gene059805.t1 MTR_5g053390 75.546 229 56 0 1 229 1 229 5.41e-123 348
MS.gene059805.t1 MTR_1g077360 71.111 225 65 0 1 225 1 225 1.81e-115 330
MS.gene059805.t1 MTR_8g043650 66.094 233 79 0 1 233 1 233 2.59e-114 327
MS.gene059805.t1 MTR_1g075600 71.111 225 65 0 1 225 1 225 8.94e-114 325
MS.gene059805.t1 MTR_1g105920 67.580 219 71 0 1 219 1 219 6.21e-110 316
MS.gene059805.t1 MTR_1g105910 65.333 225 78 0 1 225 1 225 1.45e-108 312
MS.gene059805.t1 MTR_1g012570 67.123 219 72 0 1 219 1 219 6.62e-107 308
MS.gene059805.t1 MTR_2g030740 64.384 219 78 0 1 219 1 219 1.60e-105 305
MS.gene059805.t1 MTR_3g052920 63.927 219 79 0 1 219 1 219 1.27e-101 295
MS.gene059805.t1 MTR_3g030770 62.553 235 70 3 1 225 1 227 5.99e-100 290
MS.gene059805.t1 MTR_0121s0080 60.086 233 92 1 1 233 1 232 5.66e-98 285
MS.gene059805.t1 MTR_1g108510 62.128 235 71 3 1 225 1 227 6.75e-98 285
MS.gene059805.t1 MTR_1g105905 61.111 216 84 0 18 233 1 216 2.38e-95 278
MS.gene059805.t1 MTR_2g093190 60.851 235 74 3 1 225 1 227 2.09e-94 276
MS.gene059805.t1 MTR_1g108580 61.574 216 75 1 1 216 1 208 1.04e-91 269
MS.gene059805.t1 MTR_3g052870 61.187 219 66 2 1 219 1 200 3.08e-91 268
MS.gene059805.t1 MTR_1g106070 63.736 182 66 0 1 182 1 182 6.26e-82 243
MS.gene059805.t1 MTR_7g062350 53.846 221 101 1 7 226 18 238 8.20e-80 239
MS.gene059805.t1 MTR_1g075570 66.854 178 45 1 18 195 1 164 9.94e-71 214
MS.gene059805.t1 MTR_0121s0100 65.909 132 45 0 1 132 1 132 8.11e-56 174
MS.gene059805.t1 MTR_3g080940 48.315 178 92 0 1 178 1 178 8.37e-55 174
MS.gene059805.t1 MTR_3g030780 63.710 124 45 0 1 124 1 124 2.00e-52 166
MS.gene059805.t1 MTR_3g067910 73.529 102 27 0 21 122 2 103 2.71e-50 160
MS.gene059805.t1 MTR_8g086290 36.471 170 94 3 5 167 8 170 2.40e-30 111
MS.gene059805.t1 MTR_3g067875 91.071 56 5 0 18 73 1 56 4.75e-30 107
MS.gene059805.t1 MTR_3g067915 55.914 93 41 0 33 125 3 95 1.19e-28 104
MS.gene059805.t1 MTR_7g028448 37.419 155 85 2 5 159 8 150 1.57e-28 106
MS.gene059805.t1 MTR_4g036915 37.419 155 85 2 5 159 8 150 1.57e-28 106
MS.gene059805.t1 MTR_2g105290 34.483 174 102 3 5 174 8 173 1.76e-28 106
MS.gene059805.t1 MTR_3g067870 74.603 63 16 0 16 78 83 145 6.59e-25 96.7
MS.gene059805.t1 MTR_1g108500 48.673 113 35 2 7 117 93 184 1.45e-23 97.1
MS.gene059805.t1 MTR_4g127140 34.054 185 100 5 5 175 8 184 6.11e-22 89.7
MS.gene059805.t1 MTR_1g047550 53.623 69 32 0 9 77 2 70 3.31e-21 87.4
MS.gene059805.t1 MTR_8g079502 53.623 69 32 0 9 77 2 70 4.85e-21 87.0
MS.gene059805.t1 MTR_1g054265 48.101 79 41 0 9 87 2 80 6.67e-21 86.3
MS.gene059805.t1 MTR_8g051580 50.633 79 39 0 9 87 2 80 1.80e-20 85.5
MS.gene059805.t1 MTR_1g063160 50.649 77 37 1 9 84 2 78 3.40e-20 84.7
MS.gene059805.t1 MTR_4g131030 48.101 79 41 0 9 87 2 80 5.64e-20 85.1
MS.gene059805.t1 MTR_8g046350 50.725 69 34 0 9 77 2 70 1.02e-18 80.5
MS.gene059805.t1 MTR_0003s0590 27.962 211 113 4 9 186 2 206 2.80e-18 81.3
MS.gene059805.t1 MTR_4g093970 56.061 66 29 0 10 75 29 94 3.53e-18 80.9
MS.gene059805.t1 MTR_3g005530 51.471 68 33 0 9 76 2 69 4.61e-18 80.1
MS.gene059805.t1 MTR_4g094638 53.623 69 32 0 9 77 2 70 5.80e-18 79.0
MS.gene059805.t1 MTR_8g033270 50.633 79 37 1 9 85 2 80 7.98e-18 80.1
MS.gene059805.t1 MTR_4g102530 52.239 67 32 0 10 76 3 69 1.62e-17 78.2
MS.gene059805.t1 MTR_4g094632 52.174 69 33 0 9 77 2 70 1.68e-17 77.0
MS.gene059805.t1 MTR_5g066180 50.000 68 34 0 9 76 2 69 2.08e-17 78.6
MS.gene059805.t1 MTR_4g084740 34.270 178 92 5 9 162 2 178 3.41e-17 79.3
MS.gene059805.t1 MTR_1g053070 54.412 68 31 0 9 76 2 69 3.72e-17 78.2
MS.gene059805.t1 MTR_4g109830 50.725 69 33 1 9 76 2 70 1.02e-16 76.6
MS.gene059805.t1 MTR_3g452380 45.946 74 40 0 3 76 11 84 1.03e-16 77.0
MS.gene059805.t1 MTR_8g022970 34.395 157 92 3 8 159 17 167 1.44e-16 75.1
MS.gene059805.t1 MTR_7g075870 52.239 67 32 0 10 76 3 69 2.36e-16 75.5
MS.gene059805.t1 MTR_3g102570 44.330 97 51 3 9 104 2 96 2.67e-16 76.6
MS.gene059805.t1 MTR_8g087860 50.000 68 34 0 9 76 18 85 2.77e-16 75.9
MS.gene059805.t1 MTR_6g464720 50.725 69 33 1 9 76 2 70 3.48e-16 75.5
MS.gene059805.t1 MTR_1g101970 51.471 68 33 0 9 76 2 69 4.43e-16 73.9
MS.gene059805.t1 MTR_2g017865 50.000 68 34 0 9 76 17 84 5.68e-16 75.1
MS.gene059805.t1 MTR_5g032150 48.529 68 35 0 9 76 2 69 8.72e-16 73.9
MS.gene059805.t1 MTR_2g009890 47.059 68 36 0 9 76 2 69 8.83e-16 74.7
MS.gene059805.t1 MTR_8g033220 49.275 69 35 0 10 78 3 71 1.05e-15 73.9
MS.gene059805.t1 MTR_8g033220 49.275 69 35 0 10 78 3 71 1.05e-15 73.9
MS.gene059805.t1 MTR_5g032520 48.529 68 35 0 9 76 2 69 1.21e-15 73.6
MS.gene059805.t1 MTR_7g016600 50.725 69 33 1 9 76 2 70 3.07e-15 72.8
MS.gene059805.t1 MTR_3g437790 31.690 142 82 4 26 159 30 164 3.11e-15 71.6
MS.gene059805.t1 MTR_5g031000 47.059 68 36 0 9 76 2 69 3.11e-15 72.4
MS.gene059805.t1 MTR_5g031000 47.059 68 36 0 9 76 2 69 3.13e-15 72.8
MS.gene059805.t1 MTR_6g015975 50.725 69 33 1 9 76 2 70 3.54e-15 72.8
MS.gene059805.t1 MTR_5g021270 50.000 70 33 1 9 76 2 71 3.99e-15 72.4
MS.gene059805.t1 MTR_5g021270 50.000 70 33 1 9 76 2 71 4.09e-15 72.4
MS.gene059805.t1 MTR_8g066260 46.377 69 36 1 9 76 2 70 4.62e-15 72.4
MS.gene059805.t1 MTR_7g075870 51.471 68 32 1 10 76 3 70 5.18e-15 71.6
MS.gene059805.t1 MTR_2g461710 53.571 56 26 0 9 64 2 57 6.82e-15 67.4
MS.gene059805.t1 MTR_3g088615 45.714 70 36 1 9 76 2 71 6.96e-15 70.5
MS.gene059805.t1 MTR_5g046790 46.377 69 36 1 9 76 2 70 7.53e-15 71.2
MS.gene059805.t1 MTR_7g016630 44.928 69 37 1 9 76 2 70 7.65e-15 72.0
MS.gene059805.t1 MTR_1g029670 50.000 66 32 1 9 74 2 66 1.25e-14 70.1
MS.gene059805.t1 MTR_7g075850 46.429 84 42 2 9 89 2 85 1.27e-14 71.2
MS.gene059805.t1 MTR_1g038300 50.000 70 33 1 9 76 2 71 1.51e-14 70.9
MS.gene059805.t1 MTR_5g046870 49.275 69 34 1 9 76 2 70 2.22e-14 67.8
MS.gene059805.t1 MTR_4g109810 27.984 243 136 10 9 230 2 226 2.76e-14 70.1
MS.gene059805.t1 MTR_5g066960 49.123 57 29 0 9 65 2 58 3.43e-14 65.5
MS.gene059805.t1 MTR_3g113030 47.619 63 33 0 9 71 2 64 8.19e-14 68.6
MS.gene059805.t1 MTR_8g097090 47.826 69 35 1 9 76 2 70 2.49e-13 67.4
MS.gene059805.t1 MTR_3g084980 46.377 69 36 1 9 76 2 70 2.53e-13 67.4
MS.gene059805.t1 MTR_4g093030 35.789 95 45 1 9 87 2 96 2.61e-13 65.9
MS.gene059805.t1 MTR_3g109930 31.206 141 79 3 27 159 20 150 5.09e-13 65.5
MS.gene059805.t1 MTR_4g036050 41.429 70 40 1 9 77 2 71 9.84e-12 62.0
MS.gene059805.t1 MTR_4g036050 41.429 70 40 1 9 77 2 71 9.87e-12 62.4
MS.gene059805.t1 MTR_4g036050 41.429 70 40 1 9 77 2 71 1.04e-11 62.0
MS.gene059805.t1 MTR_4g036050 41.429 70 40 1 9 77 2 71 1.08e-11 62.4
MS.gene059805.t1 MTR_4g108720 38.043 92 54 2 9 97 2 93 1.65e-11 63.5
MS.gene059805.t1 MTR_4g051538 28.191 188 114 7 5 182 5 181 9.81e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059805.t1 AT5G60440 48.148 189 89 4 5 189 3 186 1.40e-51 169
MS.gene059805.t1 AT2G24840 48.428 159 73 3 9 162 63 217 2.76e-41 142
MS.gene059805.t1 AT1G65360 39.683 189 107 3 5 192 3 185 3.58e-41 140
MS.gene059805.t1 AT1G01530 41.237 194 98 4 4 192 2 184 8.93e-40 137
MS.gene059805.t1 AT4G36590 44.578 166 78 4 5 160 3 164 6.15e-36 127
MS.gene059805.t1 AT2G34440 33.951 162 105 2 9 170 2 161 3.55e-25 97.8
MS.gene059805.t1 AT1G72350 34.286 175 79 5 9 182 43 182 5.63e-22 90.5
MS.gene059805.t1 AT3G04100 29.012 162 111 2 2 159 7 168 3.30e-21 88.2
MS.gene059805.t1 AT1G28460 32.500 160 102 3 5 161 4 160 2.53e-20 85.1
MS.gene059805.t1 AT3G66656 41.748 103 59 1 9 110 2 104 2.82e-20 85.1
MS.gene059805.t1 AT1G29962 29.651 172 105 3 5 170 4 165 5.22e-19 82.0
MS.gene059805.t1 AT2G45650 55.882 68 30 0 9 76 2 69 9.52e-19 82.8
MS.gene059805.t1 AT2G45660 54.412 68 31 0 10 77 3 70 1.44e-18 80.1
MS.gene059805.t1 AT5G51870 54.167 72 33 0 5 76 21 92 1.88e-18 80.5
MS.gene059805.t1 AT2G45660 54.412 68 31 0 10 77 3 70 3.26e-18 80.5
MS.gene059805.t1 AT4G22950 52.239 67 32 0 10 76 3 69 5.79e-18 78.6
MS.gene059805.t1 AT5G51870 55.224 67 30 0 10 76 3 69 6.01e-18 79.7
MS.gene059805.t1 AT5G51870 55.224 67 30 0 10 76 3 69 6.43e-18 78.6
MS.gene059805.t1 AT5G51870 52.703 74 33 1 3 76 8 79 9.94e-18 79.3
MS.gene059805.t1 AT4G24540 37.162 148 76 4 9 156 2 132 1.04e-17 79.3
MS.gene059805.t1 AT1G77980 46.067 89 47 1 9 96 2 90 1.13e-17 80.9
MS.gene059805.t1 AT5G51870 55.224 67 30 0 10 76 3 69 1.22e-17 79.0
MS.gene059805.t1 AT4G22950 52.239 67 32 0 10 76 3 69 1.51e-17 78.6
MS.gene059805.t1 AT4G22950 52.239 67 32 0 10 76 3 69 1.51e-17 78.6
MS.gene059805.t1 AT4G09960 50.000 68 34 0 9 76 2 69 1.56e-17 78.6
MS.gene059805.t1 AT4G09960 50.000 68 34 0 9 76 2 69 1.65e-17 79.0
MS.gene059805.t1 AT4G09960 50.000 68 34 0 9 76 3 70 1.67e-17 79.0
MS.gene059805.t1 AT1G22130 42.424 99 56 1 9 106 2 100 2.15e-17 80.1
MS.gene059805.t1 AT4G09960 50.000 68 34 0 9 76 12 79 2.23e-17 78.6
MS.gene059805.t1 AT3G57230 48.529 68 35 0 9 76 2 69 2.46e-17 76.3
MS.gene059805.t1 AT4G09960 50.000 68 34 0 9 76 28 95 2.82e-17 78.6
MS.gene059805.t1 AT2G22540 51.471 68 33 0 9 76 2 69 3.39e-17 78.2
MS.gene059805.t1 AT2G22540 51.471 68 33 0 9 76 2 69 3.39e-17 78.2
MS.gene059805.t1 AT3G57390 52.941 68 32 0 9 76 2 69 4.04e-17 77.8
MS.gene059805.t1 AT5G62165 52.239 67 32 0 10 76 3 69 4.90e-17 74.3
MS.gene059805.t1 AT5G62165 52.239 67 32 0 10 76 3 69 5.26e-17 75.9
MS.gene059805.t1 AT5G62165 52.239 67 32 0 10 76 3 69 5.26e-17 75.9
MS.gene059805.t1 AT5G62165 52.239 67 32 0 10 76 3 69 5.26e-17 75.9
MS.gene059805.t1 AT5G62165 52.239 67 32 0 10 76 3 69 5.97e-17 75.5
MS.gene059805.t1 AT5G62165 52.239 67 32 0 10 76 3 69 5.97e-17 75.5
MS.gene059805.t1 AT5G62165 52.239 67 32 0 10 76 3 69 5.97e-17 75.5
MS.gene059805.t1 AT5G62165 52.239 67 32 0 10 76 3 69 5.97e-17 75.5
MS.gene059805.t1 AT5G62165 52.239 67 32 0 10 76 3 69 5.97e-17 75.5
MS.gene059805.t1 AT4G37940 50.000 68 34 0 9 76 2 69 6.21e-17 77.0
MS.gene059805.t1 AT3G57230 48.529 68 35 0 9 76 2 69 6.37e-17 77.4
MS.gene059805.t1 AT3G57230 48.529 68 35 0 9 76 2 69 6.37e-17 77.4
MS.gene059805.t1 AT4G09960 50.000 68 34 0 9 76 97 164 7.33e-17 78.6
MS.gene059805.t1 AT4G37940 50.000 68 34 0 9 76 2 69 7.51e-17 77.0
MS.gene059805.t1 AT5G10140 49.275 69 34 1 9 76 2 70 8.52e-17 75.5
MS.gene059805.t1 AT5G10140 49.275 69 34 1 9 76 2 70 9.41e-17 75.9
MS.gene059805.t1 AT3G57390 52.941 68 32 0 9 76 2 69 9.71e-17 77.4
MS.gene059805.t1 AT4G37940 50.000 68 34 0 9 76 2 69 1.01e-16 75.5
MS.gene059805.t1 AT5G10140 49.275 69 34 1 9 76 2 70 1.19e-16 75.9
MS.gene059805.t1 AT5G62165 52.239 67 32 0 10 76 3 69 1.32e-16 75.9
MS.gene059805.t1 AT5G62165 52.239 67 32 0 10 76 3 69 1.32e-16 75.9
MS.gene059805.t1 AT5G23260 35.065 154 72 4 5 130 14 167 1.64e-16 76.6
MS.gene059805.t1 AT5G62165 52.239 67 32 0 10 76 3 69 1.66e-16 75.9
MS.gene059805.t1 AT5G62165 52.239 67 32 0 10 76 3 69 1.66e-16 75.9
MS.gene059805.t1 AT5G62165 52.239 67 32 0 10 76 3 69 1.66e-16 75.9
MS.gene059805.t1 AT5G13790 51.471 68 33 0 9 76 2 69 2.03e-16 76.6
MS.gene059805.t1 AT5G13790 51.471 68 33 0 9 76 2 69 2.05e-16 76.6
MS.gene059805.t1 AT1G77950 41.573 89 51 1 9 96 2 90 2.21e-16 76.3
MS.gene059805.t1 AT1G77950 41.573 89 51 1 9 96 2 90 2.21e-16 76.3
MS.gene059805.t1 AT1G77950 41.573 89 51 1 9 96 2 90 2.21e-16 76.3
MS.gene059805.t1 AT1G77950 41.573 89 51 1 9 96 2 90 2.21e-16 76.3
MS.gene059805.t1 AT5G10140 49.275 69 34 1 9 76 2 70 2.56e-16 74.7
MS.gene059805.t1 AT3G54340 46.575 73 37 1 9 79 2 74 2.67e-16 75.5
MS.gene059805.t1 AT1G47760 34.783 115 65 2 9 115 2 114 3.22e-16 74.3
MS.gene059805.t1 AT4G18960 48.611 72 37 0 9 80 18 89 3.32e-16 75.9
MS.gene059805.t1 AT5G51860 52.239 67 32 0 10 76 3 69 3.51e-16 74.7
MS.gene059805.t1 AT3G58780 49.296 71 36 0 6 76 14 84 3.54e-16 75.5
MS.gene059805.t1 AT2G42830 50.000 68 34 0 9 76 17 84 3.66e-16 75.5
MS.gene059805.t1 AT2G42830 50.000 68 34 0 9 76 17 84 4.04e-16 75.5
MS.gene059805.t1 AT3G58780 49.296 71 36 0 6 76 20 90 4.05e-16 75.5
MS.gene059805.t1 AT5G23260 35.333 150 69 4 9 130 2 151 4.06e-16 75.5
MS.gene059805.t1 AT5G51860 52.239 67 32 0 10 76 3 69 5.02e-16 74.3
MS.gene059805.t1 AT2G22630 48.529 68 35 0 9 76 2 69 5.13e-16 74.7
MS.gene059805.t1 AT2G22630 48.529 68 35 0 9 76 2 69 5.13e-16 74.7
MS.gene059805.t1 AT1G69120 37.000 100 55 2 9 100 2 101 6.28e-16 74.7
MS.gene059805.t1 AT3G58780 49.296 71 36 0 6 76 14 84 8.75e-16 75.1
MS.gene059805.t1 AT3G30260 46.377 69 36 1 9 76 2 70 1.05e-15 74.3
MS.gene059805.t1 AT5G23260 50.667 75 35 1 5 77 14 88 1.31e-15 74.3
MS.gene059805.t1 AT1G69120 37.000 100 55 2 9 100 2 101 1.59e-15 73.9
MS.gene059805.t1 AT5G60910 47.826 69 35 1 9 76 2 70 2.36e-15 73.2
MS.gene059805.t1 AT3G61120 51.471 68 33 0 9 76 2 69 2.38e-15 73.2
MS.gene059805.t1 AT5G23260 52.113 71 32 1 9 77 2 72 3.05e-15 72.8
MS.gene059805.t1 AT1G26310 47.826 69 35 1 9 76 2 70 3.92e-15 72.8
MS.gene059805.t1 AT1G28450 28.834 163 107 4 5 161 4 163 3.92e-15 71.6
MS.gene059805.t1 AT4G11880 51.471 68 32 1 10 76 3 70 4.03e-15 71.2
MS.gene059805.t1 AT4G11880 51.471 68 32 1 10 76 3 70 4.03e-15 71.2
MS.gene059805.t1 AT2G14210 47.826 69 35 1 9 76 2 70 4.09e-15 72.4
MS.gene059805.t1 AT1G17310 53.165 79 35 1 8 86 47 123 5.28e-15 71.6
MS.gene059805.t1 AT2G14210 47.826 69 35 1 9 76 2 70 5.35e-15 72.0
MS.gene059805.t1 AT4G11880 51.471 68 32 1 10 76 3 70 5.46e-15 72.0
MS.gene059805.t1 AT4G11880 51.471 68 32 1 10 76 3 70 5.46e-15 72.0
MS.gene059805.t1 AT5G20240 46.575 73 37 1 9 79 2 74 7.20e-15 71.2
MS.gene059805.t1 AT5G20240 46.575 73 37 1 9 79 2 74 7.20e-15 70.1
MS.gene059805.t1 AT5G15800 50.725 69 33 1 9 76 2 70 7.29e-15 72.0
MS.gene059805.t1 AT5G65050 47.826 69 35 1 9 76 2 70 7.39e-15 70.5
MS.gene059805.t1 AT1G17310 53.165 79 35 1 8 86 58 134 7.92e-15 71.6
MS.gene059805.t1 AT5G15800 50.725 69 33 1 9 76 2 70 1.22e-14 71.6
MS.gene059805.t1 AT2G22540 50.000 68 29 1 9 76 2 64 1.25e-14 71.2
MS.gene059805.t1 AT5G65050 47.826 69 35 1 9 76 2 70 1.35e-14 70.1
MS.gene059805.t1 AT5G65050 47.826 69 35 1 9 76 2 70 1.40e-14 70.1
MS.gene059805.t1 AT5G65050 47.826 69 35 1 9 76 2 70 1.46e-14 70.1
MS.gene059805.t1 AT2G03710 50.000 70 33 2 9 76 2 71 3.71e-14 68.9
MS.gene059805.t1 AT5G65060 47.826 69 35 1 9 76 2 70 3.89e-14 68.9
MS.gene059805.t1 AT5G65060 47.826 69 35 1 9 76 2 70 4.09e-14 68.6
MS.gene059805.t1 AT5G65060 47.826 69 35 1 9 76 2 70 5.25e-14 68.6
MS.gene059805.t1 AT2G03710 50.000 70 33 2 9 76 2 71 7.00e-14 69.3
MS.gene059805.t1 AT3G58780 51.667 60 29 0 6 65 14 73 7.32e-14 68.9
MS.gene059805.t1 AT1G71692 47.143 70 36 1 9 77 2 71 7.41e-14 68.6
MS.gene059805.t1 AT2G03710 50.000 70 33 2 9 76 2 71 7.52e-14 69.3
MS.gene059805.t1 AT3G58780 51.667 60 29 0 6 65 14 73 1.12e-13 68.9
MS.gene059805.t1 AT3G02310 46.377 69 36 1 9 76 2 70 1.25e-13 67.8
MS.gene059805.t1 AT1G24260 55.357 56 25 0 9 64 2 57 1.85e-13 67.8
MS.gene059805.t1 AT3G02310 46.377 69 36 1 9 76 2 70 1.93e-13 68.2
MS.gene059805.t1 AT1G24260 55.357 56 25 0 9 64 2 57 2.07e-13 67.8
MS.gene059805.t1 AT1G24260 55.357 56 25 0 9 64 2 57 2.11e-13 67.8
MS.gene059805.t1 AT5G65070 43.478 69 38 1 9 76 2 70 2.13e-13 65.9
MS.gene059805.t1 AT5G65070 43.478 69 38 1 9 76 2 70 2.13e-13 67.0
MS.gene059805.t1 AT5G65070 43.478 69 38 1 9 76 2 70 4.21e-13 66.6
MS.gene059805.t1 AT5G65070 43.478 69 38 1 9 76 2 70 6.91e-13 65.9
MS.gene059805.t1 AT5G65070 49.123 57 29 0 9 65 2 58 1.70e-12 65.1
MS.gene059805.t1 AT1G18750 40.000 75 43 1 9 81 2 76 3.24e-12 65.5
MS.gene059805.t1 AT1G18750 40.000 75 43 1 9 81 2 76 4.07e-12 65.5
MS.gene059805.t1 AT1G18750 40.000 75 43 1 9 81 2 76 4.08e-12 65.5
MS.gene059805.t1 AT5G65080 42.029 69 39 1 9 76 9 77 8.87e-12 62.4
MS.gene059805.t1 AT4G37435 42.254 71 40 1 9 78 2 72 1.69e-11 61.6
MS.gene059805.t1 AT5G65080 48.148 54 28 0 9 62 9 62 2.90e-11 61.2
MS.gene059805.t1 AT5G27130 41.975 81 43 2 6 82 10 90 4.08e-11 62.0
MS.gene059805.t1 AT2G03060 25.620 242 131 12 9 207 2 237 4.15e-11 62.4
MS.gene059805.t1 AT2G03060 25.620 242 131 12 9 207 2 237 5.06e-11 62.0
MS.gene059805.t1 AT2G03060 25.620 242 131 12 9 207 2 237 5.06e-11 62.0
MS.gene059805.t1 AT2G03060 25.620 242 131 12 9 207 2 237 5.06e-11 62.0

Find 56 sgRNAs with CRISPR-Local

Find 68 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCCATGATGCCATCATTT+TGG 0.152250 2.4:+18860015 None:intergenic
TTTGTTTGGTTTCAACAATA+TGG 0.241179 2.4:-18859607 MS.gene059805:CDS
TTGTTGAAACCAAACAAATT+AGG 0.245759 2.4:+18859612 None:intergenic
CCCCATTCATCTTTCGTTGT+TGG 0.261530 2.4:+18859889 None:intergenic
TCTATGACCGTTTCAACATT+TGG 0.309906 2.4:+18860062 None:intergenic
TTTGATTCTTGTTGAGGATT+TGG 0.321722 2.4:+18859672 None:intergenic
TGTTGGACAACATGCTAATA+TGG 0.327440 2.4:-18859778 MS.gene059805:CDS
TGATGGCATCATGGAATTCA+TGG 0.359601 2.4:-18860009 MS.gene059805:CDS
ATGTTGCAACCTAATTTGTT+TGG 0.363366 2.4:-18859621 MS.gene059805:CDS
GGATTTGGTTGATGCTCAAT+AGG 0.364425 2.4:+18859687 None:intergenic
GAGGATCTTCAGAAACTTGT+TGG 0.372862 2.4:-18859795 MS.gene059805:CDS
AGCGAGCTTTGCACCCTTTG+TGG 0.373521 2.4:-18860143 MS.gene059805:CDS
TTGTTTGGTTTCAACAATAT+GGG 0.386179 2.4:-18859606 MS.gene059805:CDS
TGATTTATTAAAGAAGGCTT+TGG 0.388057 2.4:-18859817 MS.gene059805:CDS
CCAACTTGATTTATTAAAGA+AGG 0.389126 2.4:-18859823 MS.gene059805:CDS
TGCTAATATGGTTGAAATGC+AGG 0.404469 2.4:-18859766 MS.gene059805:CDS
TCCCATTGATGAGATGAATA+TGG 0.418270 2.4:-18859847 MS.gene059805:CDS
GACCATATTCATCTCATCAA+TGG 0.429531 2.4:+18859845 None:intergenic
AACAAATTAGGTTGCAACAT+AGG 0.446627 2.4:+18859624 None:intergenic
AACAATATGGGAGGAGAAGA+TGG 0.453701 2.4:-18859594 MS.gene059805:CDS
GCCAACAACGAAAGATGAAT+GGG 0.457149 2.4:-18859890 MS.gene059805:CDS
GGAAAATTTGATTCTTGTTG+AGG 0.459812 2.4:+18859666 None:intergenic
ACAAATTAGGTTGCAACATA+GGG 0.464364 2.4:+18859625 None:intergenic
TTTATTAAAGAAGGCTTTGG+AGG 0.489471 2.4:-18859814 MS.gene059805:CDS
ACCATATTCATCTCATCAAT+GGG 0.490788 2.4:+18859846 None:intergenic
GAAGATGGACATGGTCCTCA+TGG 0.494228 2.4:-18859579 MS.gene059805:CDS
GTTGGCTCAGCTCATTCTCA+CGG 0.502310 2.4:+18859907 None:intergenic
AGCCAACAACGAAAGATGAA+TGG 0.503597 2.4:-18859891 MS.gene059805:CDS
TGGTTATCCAAATGTTGAAA+CGG 0.505688 2.4:-18860069 MS.gene059805:CDS
CTGATCCCACCCCAAAATGA+TGG 0.513576 2.4:-18860026 MS.gene059805:CDS
AGCAATATATGCACCACAAA+GGG 0.515612 2.4:+18860130 None:intergenic
CCTTCTTTAATAAATCAAGT+TGG 0.517926 2.4:+18859823 None:intergenic
ACAAAGGGTGCAAAGCTCGC+TGG 0.525634 2.4:+18860145 None:intergenic
GCTCACGCACCTTGGCTCTA+CGG 0.536826 2.4:+18859979 None:intergenic
ACCCCAAAATGATGGCATCA+TGG 0.541533 2.4:-18860018 MS.gene059805:CDS
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 2.4:-18860181 MS.gene059805:CDS
GCCAAGGTGCGTGAGCTCAA+TGG 0.556002 2.4:-18859972 MS.gene059805:CDS
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 2.4:-18860182 MS.gene059805:CDS
ACCATTGAGCTCACGCACCT+TGG 0.575766 2.4:+18859971 None:intergenic
GCTAATATGGTTGAAATGCA+GGG 0.602624 2.4:-18859765 MS.gene059805:CDS
TTTGGTTTCAACAATATGGG+AGG 0.603714 2.4:-18859603 MS.gene059805:CDS
AAGATGGACATGGTCCTCAT+GGG 0.606190 2.4:-18859578 None:intergenic
TTGATGCTCAATAGGCATGT+TGG 0.609005 2.4:+18859695 None:intergenic
CTTTCTTGAAGAGCCCACTA+CGG 0.610979 2.4:+18860168 None:intergenic
TATATTCTCACCTAGTGAGA+AGG 0.611194 2.4:-18860102 MS.gene059805:CDS
GGAGGATTTCCGTAGAGCCA+AGG 0.615589 2.4:-18859988 MS.gene059805:CDS
GAGCAATATATGCACCACAA+AGG 0.629097 2.4:+18860129 None:intergenic
ATGCTCAATAGGCATGTTGG+AGG 0.637536 2.4:+18859698 None:intergenic
AATGAAAATACCTTCTCACT+AGG 0.637760 2.4:+18860092 None:intergenic
TGTGCATTAGCCATGTCGGG+CGG 0.650518 2.4:-18860272 None:intergenic
CCAACAACGAAAGATGAATG+GGG 0.679618 2.4:-18859889 MS.gene059805:CDS
CAACAACGAAAGATGAATGG+GGG 0.695270 2.4:-18859888 MS.gene059805:CDS
ATGGGAGGAGAAGATGGACA+TGG 0.698479 2.4:-18859588 MS.gene059805:CDS
TCGGGCGGAAAGAAAACTCG+AGG 0.699514 2.4:-18860257 MS.gene059805:CDS
TCAGATCAAATGAACCCATG+AGG 0.726460 2.4:+18859564 None:intergenic
TGGCATCATGGAATTCATGG+AGG 0.743879 2.4:-18860006 MS.gene059805:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ATTTCCAACAAAAAATGGAA+GGG + chr2.4:18860114-18860133 None:intergenic 25.0%
! CCAACTTGATTTATTAAAGA+AGG - chr2.4:18860016-18860035 MS.gene059805:CDS 25.0%
! CCTTCTTTAATAAATCAAGT+TGG + chr2.4:18860019-18860038 None:intergenic 25.0%
! TGATTTATTAAAGAAGGCTT+TGG - chr2.4:18860022-18860041 MS.gene059805:CDS 25.0%
! TTGTTGAAACCAAACAAATT+AGG + chr2.4:18860230-18860249 None:intergenic 25.0%
!! TTGTTTGGTTTCAACAATAT+GGG - chr2.4:18860233-18860252 MS.gene059805:CDS 25.0%
!! TTTGTTTGGTTTCAACAATA+TGG - chr2.4:18860232-18860251 MS.gene059805:CDS 25.0%
AATGAAAATACCTTCTCACT+AGG + chr2.4:18859750-18859769 None:intergenic 30.0%
ACCATATTCATCTCATCAAT+GGG + chr2.4:18859996-18860015 None:intergenic 30.0%
CATTTCCAACAAAAAATGGA+AGG + chr2.4:18860115-18860134 None:intergenic 30.0%
GAACCATTTCCAACAAAAAA+TGG + chr2.4:18860119-18860138 None:intergenic 30.0%
GGAAAATTTGATTCTTGTTG+AGG + chr2.4:18860176-18860195 None:intergenic 30.0%
TGGTTATCCAAATGTTGAAA+CGG - chr2.4:18859770-18859789 MS.gene059805:CDS 30.0%
TTTGATTCTTGTTGAGGATT+TGG + chr2.4:18860170-18860189 None:intergenic 30.0%
! AACAAATTAGGTTGCAACAT+AGG + chr2.4:18860218-18860237 None:intergenic 30.0%
! ACAAATTAGGTTGCAACATA+GGG + chr2.4:18860217-18860236 None:intergenic 30.0%
! TTTATTAAAGAAGGCTTTGG+AGG - chr2.4:18860025-18860044 MS.gene059805:CDS 30.0%
!! ATGTTGCAACCTAATTTGTT+TGG - chr2.4:18860218-18860237 MS.gene059805:CDS 30.0%
!!! AGTGAGAAGGTATTTTCATT+TGG - chr2.4:18859750-18859769 MS.gene059805:CDS 30.0%
!!! CTTCCATTTTTTGTTGGAAA+TGG - chr2.4:18860113-18860132 MS.gene059805:CDS 30.0%
AACAAAAAATGGAAGGGCTT+GGG + chr2.4:18860108-18860127 None:intergenic 35.0%
AGCAATATATGCACCACAAA+GGG + chr2.4:18859712-18859731 None:intergenic 35.0%
GACCATATTCATCTCATCAA+TGG + chr2.4:18859997-18860016 None:intergenic 35.0%
GCTAATATGGTTGAAATGCA+GGG - chr2.4:18860074-18860093 MS.gene059805:CDS 35.0%
TATATTCTCACCTAGTGAGA+AGG - chr2.4:18859737-18859756 MS.gene059805:CDS 35.0%
TCCCATTGATGAGATGAATA+TGG - chr2.4:18859992-18860011 MS.gene059805:CDS 35.0%
TCTATGACCGTTTCAACATT+TGG + chr2.4:18859780-18859799 None:intergenic 35.0%
TGCTAATATGGTTGAAATGC+AGG - chr2.4:18860073-18860092 MS.gene059805:CDS 35.0%
TGTTGGACAACATGCTAATA+TGG - chr2.4:18860061-18860080 MS.gene059805:CDS 35.0%
! ATTCCATGATGCCATCATTT+TGG + chr2.4:18859827-18859846 None:intergenic 35.0%
! TTCCATGATGCCATCATTTT+GGG + chr2.4:18859826-18859845 None:intergenic 35.0%
! TTTGGTTTCAACAATATGGG+AGG - chr2.4:18860236-18860255 MS.gene059805:CDS 35.0%
AACAATATGGGAGGAGAAGA+TGG - chr2.4:18860245-18860264 MS.gene059805:CDS 40.0%
AGCCAACAACGAAAGATGAA+TGG - chr2.4:18859948-18859967 MS.gene059805:CDS 40.0%
CAACAAAAAATGGAAGGGCT+TGG + chr2.4:18860109-18860128 None:intergenic 40.0%
CAACAACGAAAGATGAATGG+GGG - chr2.4:18859951-18859970 MS.gene059805:CDS 40.0%
CCAACAACGAAAGATGAATG+GGG - chr2.4:18859950-18859969 MS.gene059805:CDS 40.0%
GAGCAATATATGCACCACAA+AGG + chr2.4:18859713-18859732 None:intergenic 40.0%
GAGGATCTTCAGAAACTTGT+TGG - chr2.4:18860044-18860063 MS.gene059805:CDS 40.0%
GCCAACAACGAAAGATGAAT+GGG - chr2.4:18859949-18859968 MS.gene059805:CDS 40.0%
GGGTTATGAAAAAACTCAGC+TGG + chr2.4:18860197-18860216 None:intergenic 40.0%
TGATGGCATCATGGAATTCA+TGG - chr2.4:18859830-18859849 MS.gene059805:CDS 40.0%
TTGATGCTCAATAGGCATGT+TGG + chr2.4:18860147-18860166 None:intergenic 40.0%
! GGATTTGGTTGATGCTCAAT+AGG + chr2.4:18860155-18860174 None:intergenic 40.0%
! TCCATGATGCCATCATTTTG+GGG + chr2.4:18859825-18859844 None:intergenic 40.0%
!!! CAAGCCCTTCCATTTTTTGT+TGG - chr2.4:18860107-18860126 MS.gene059805:CDS 40.0%
ACCCCAAAATGATGGCATCA+TGG - chr2.4:18859821-18859840 MS.gene059805:CDS 45.0%
ATGCTCAATAGGCATGTTGG+AGG + chr2.4:18860144-18860163 None:intergenic 45.0%
CCCCATTCATCTTTCGTTGT+TGG + chr2.4:18859953-18859972 None:intergenic 45.0%
CTTTCTTGAAGAGCCCACTA+CGG + chr2.4:18859674-18859693 None:intergenic 45.0%
TGGCATCATGGAATTCATGG+AGG - chr2.4:18859833-18859852 MS.gene059805:CDS 45.0%
! AGATGAATGGGGGTCAGTTT+TGG - chr2.4:18859961-18859980 MS.gene059805:CDS 45.0%
!! ATGATGCCATCATTTTGGGG+TGG + chr2.4:18859822-18859841 None:intergenic 45.0%
!!! TGATGCCATCATTTTGGGGT+GGG + chr2.4:18859821-18859840 None:intergenic 45.0%
ATGGGAGGAGAAGATGGACA+TGG - chr2.4:18860251-18860270 MS.gene059805:CDS 50.0%
CTGATCCCACCCCAAAATGA+TGG - chr2.4:18859813-18859832 MS.gene059805:CDS 50.0%
GAAGATGGACATGGTCCTCA+TGG - chr2.4:18860260-18860279 MS.gene059805:CDS 50.0%
! GTTGGCTCAGCTCATTCTCA+CGG + chr2.4:18859935-18859954 None:intergenic 50.0%
!! TGAATGGGGGTCAGTTTTGG+TGG - chr2.4:18859964-18859983 MS.gene059805:CDS 50.0%
ACCATTGAGCTCACGCACCT+TGG + chr2.4:18859871-18859890 None:intergenic 55.0%
AGCGAGCTTTGCACCCTTTG+TGG - chr2.4:18859696-18859715 MS.gene059805:CDS 55.0%
GGAGGATTTCCGTAGAGCCA+AGG - chr2.4:18859851-18859870 MS.gene059805:CDS 55.0%
TCGGGCGGAAAGAAAACTCG+AGG - chr2.4:18859582-18859601 MS.gene059805:CDS 55.0%
! ACAAAGGGTGCAAAGCTCGC+TGG + chr2.4:18859697-18859716 None:intergenic 55.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG - chr2.4:18859657-18859676 MS.gene059805:CDS 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG - chr2.4:18859658-18859677 MS.gene059805:CDS 55.0%
GCCAAGGTGCGTGAGCTCAA+TGG - chr2.4:18859867-18859886 MS.gene059805:CDS 60.0%
!! GCTCACGCACCTTGGCTCTA+CGG + chr2.4:18859863-18859882 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 18859579 18860282 18859579 ID=MS.gene059805
chr2.4 mRNA 18859579 18860282 18859579 ID=MS.gene059805.t1;Parent=MS.gene059805
chr2.4 exon 18859579 18860282 18859579 ID=MS.gene059805.t1.exon1;Parent=MS.gene059805.t1
chr2.4 CDS 18859579 18860282 18859579 ID=cds.MS.gene059805.t1;Parent=MS.gene059805.t1
Gene Sequence

>MS.gene059805

ATGTCGGGCGGAAAGAAAACTCGAGGTCGTCAAAAGATTGAGATGAAAAAGATGAGCAATGAAAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGCGAGCTTTGCACCCTTTGTGGTGCATATATTGCTCTAATTATATTCTCACCTAGTGAGAAGGTATTTTCATTTGGTTATCCAAATGTTGAAACGGTCATAGATCGTTATCTGTCTCTGATCCCACCCCAAAATGATGGCATCATGGAATTCATGGAGGATTTCCGTAGAGCCAAGGTGCGTGAGCTCAATGGTATATTGACTCGTATGAACGATGCAATAGACATTGACAAGAACCGTGAGAATGAGCTGAGCCAACAACGAAAGATGAATGGGGGTCAGTTTTGGTGGACTCGTCCCATTGATGAGATGAATATGGTCCAACTTGATTTATTAAAGAAGGCTTTGGAGGATCTTCAGAAACTTGTTGGACAACATGCTAATATGGTTGAAATGCAGGGTACTTCTACCCAAGCCCTTCCATTTTTTGTTGGAAATGGTTCATCCTCCAACATGCCTATTGAGCATCAACCAAATCCTCAACAAGAATCAAATTTTCCAGCTGAGTTTTTTCATAACCCTATGTTGCAACCTAATTTGTTTGGTTTCAACAATATGGGAGGAGAAGATGGACATGGTCCTCATGG
Protein sequence

>MS.gene059805.t1

MSGGKKTRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGAYIALIIFSPSEKVFSFGYPNVETVIDRYLSLIPPQNDGIMEFMEDFRRAKVRELNGILTRMNDAIDIDKNRENELSQQRKMNGGQFWWTRPIDEMNMVQLDLLKKALEDLQKLVGQHANMVEMQGTSTQALPFFVGNGSSSNMPIEHQPNPQQESNFPAEFFHNPMLQPNLFGFNNMGGEDGHGPH