AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene059806

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059806.t1 MTR_2g085280 94.937 237 12 0 1 237 1 237 9.41e-171 469
MS.gene059806.t1 MTR_2g085250 94.937 237 12 0 1 237 1 237 3.29e-170 468
MS.gene059806.t1 MTR_5g055100 81.780 236 43 0 1 236 1 236 1.18e-143 401
MS.gene059806.t1 MTR_5g045560 77.215 237 54 0 1 237 1 237 6.75e-125 353
MS.gene059806.t1 MTR_5g053390 75.546 229 56 0 1 229 1 229 4.79e-123 349
MS.gene059806.t1 MTR_1g077360 71.111 225 65 0 1 225 1 225 2.65e-115 329
MS.gene059806.t1 MTR_8g043650 65.401 237 82 0 1 237 1 237 1.01e-114 328
MS.gene059806.t1 MTR_1g075600 71.111 225 65 0 1 225 1 225 1.31e-113 325
MS.gene059806.t1 MTR_1g105920 67.580 219 71 0 1 219 1 219 4.03e-110 316
MS.gene059806.t1 MTR_1g105910 65.333 225 78 0 1 225 1 225 1.67e-108 312
MS.gene059806.t1 MTR_1g012570 67.123 219 72 0 1 219 1 219 6.88e-107 308
MS.gene059806.t1 MTR_2g030740 64.384 219 78 0 1 219 1 219 1.29e-105 305
MS.gene059806.t1 MTR_3g052920 63.927 219 79 0 1 219 1 219 1.73e-101 294
MS.gene059806.t1 MTR_3g030770 62.553 235 70 3 1 225 1 227 5.51e-100 290
MS.gene059806.t1 MTR_0121s0080 59.746 236 94 1 1 236 1 235 3.92e-98 286
MS.gene059806.t1 MTR_1g108510 62.128 235 71 3 1 225 1 227 7.74e-98 285
MS.gene059806.t1 MTR_1g105905 60.455 220 87 0 18 237 1 220 1.15e-95 279
MS.gene059806.t1 MTR_2g093190 60.851 235 74 3 1 225 1 227 2.45e-94 276
MS.gene059806.t1 MTR_1g108580 61.574 216 75 1 1 216 1 208 1.42e-91 269
MS.gene059806.t1 MTR_3g052870 61.187 219 66 2 1 219 1 200 3.93e-91 267
MS.gene059806.t1 MTR_1g106070 63.736 182 66 0 1 182 1 182 6.85e-82 243
MS.gene059806.t1 MTR_7g062350 53.247 231 106 2 7 236 18 247 5.93e-81 243
MS.gene059806.t1 MTR_1g075570 66.854 178 45 1 18 195 1 164 1.26e-70 213
MS.gene059806.t1 MTR_0121s0100 65.909 132 45 0 1 132 1 132 1.07e-55 174
MS.gene059806.t1 MTR_3g080940 48.315 178 92 0 1 178 1 178 7.87e-55 175
MS.gene059806.t1 MTR_3g030780 63.710 124 45 0 1 124 1 124 2.60e-52 166
MS.gene059806.t1 MTR_3g067910 73.529 102 27 0 21 122 2 103 3.56e-50 159
MS.gene059806.t1 MTR_8g086290 36.471 170 94 3 5 167 8 170 2.50e-30 111
MS.gene059806.t1 MTR_3g067875 91.071 56 5 0 18 73 1 56 6.18e-30 107
MS.gene059806.t1 MTR_3g067915 55.914 93 41 0 33 125 3 95 1.17e-28 104
MS.gene059806.t1 MTR_2g105290 34.483 174 102 3 5 174 8 173 1.80e-28 106
MS.gene059806.t1 MTR_7g028448 37.419 155 85 2 5 159 8 150 2.20e-28 105
MS.gene059806.t1 MTR_4g036915 37.419 155 85 2 5 159 8 150 2.20e-28 105
MS.gene059806.t1 MTR_3g067870 74.603 63 16 0 16 78 83 145 8.33e-25 96.3
MS.gene059806.t1 MTR_1g108500 48.673 113 35 2 7 117 93 184 1.52e-23 97.1
MS.gene059806.t1 MTR_4g127140 34.054 185 100 5 5 175 8 184 8.26e-22 89.4
MS.gene059806.t1 MTR_1g047550 53.623 69 32 0 9 77 2 70 3.89e-21 87.4
MS.gene059806.t1 MTR_8g079502 53.623 69 32 0 9 77 2 70 5.77e-21 87.0
MS.gene059806.t1 MTR_1g054265 48.101 79 41 0 9 87 2 80 7.52e-21 86.3
MS.gene059806.t1 MTR_8g051580 50.633 79 39 0 9 87 2 80 2.23e-20 85.5
MS.gene059806.t1 MTR_1g063160 50.649 77 37 1 9 84 2 78 4.00e-20 84.7
MS.gene059806.t1 MTR_4g131030 48.101 79 41 0 9 87 2 80 7.20e-20 84.7
MS.gene059806.t1 MTR_8g046350 50.725 69 34 0 9 77 2 70 1.27e-18 80.1
MS.gene059806.t1 MTR_0003s0590 27.962 211 113 4 9 186 2 206 2.90e-18 81.3
MS.gene059806.t1 MTR_4g093970 56.061 66 29 0 10 75 29 94 3.68e-18 80.9
MS.gene059806.t1 MTR_3g005530 51.471 68 33 0 9 76 2 69 5.33e-18 80.1
MS.gene059806.t1 MTR_4g094638 53.623 69 32 0 9 77 2 70 6.63e-18 79.0
MS.gene059806.t1 MTR_8g033270 50.633 79 37 1 9 85 2 80 9.22e-18 80.1
MS.gene059806.t1 MTR_4g102530 52.239 67 32 0 10 76 3 69 1.72e-17 78.2
MS.gene059806.t1 MTR_4g094632 52.174 69 33 0 9 77 2 70 2.01e-17 77.0
MS.gene059806.t1 MTR_5g066180 50.000 68 34 0 9 76 2 69 2.19e-17 78.6
MS.gene059806.t1 MTR_4g084740 34.270 178 92 5 9 162 2 178 3.23e-17 79.7
MS.gene059806.t1 MTR_1g053070 54.412 68 31 0 9 76 2 69 4.24e-17 78.2
MS.gene059806.t1 MTR_3g452380 45.946 74 40 0 3 76 11 84 1.18e-16 76.6
MS.gene059806.t1 MTR_4g109830 50.725 69 33 1 9 76 2 70 1.22e-16 76.6
MS.gene059806.t1 MTR_8g022970 34.395 157 92 3 8 159 17 167 1.60e-16 75.1
MS.gene059806.t1 MTR_7g075870 52.239 67 32 0 10 76 3 69 2.52e-16 75.5
MS.gene059806.t1 MTR_8g087860 50.000 68 34 0 9 76 18 85 3.15e-16 75.5
MS.gene059806.t1 MTR_3g102570 44.330 97 51 3 9 104 2 96 3.32e-16 76.6
MS.gene059806.t1 MTR_6g464720 50.725 69 33 1 9 76 2 70 4.80e-16 75.1
MS.gene059806.t1 MTR_1g101970 51.471 68 33 0 9 76 2 69 5.83e-16 73.9
MS.gene059806.t1 MTR_2g017865 50.000 68 34 0 9 76 17 84 6.46e-16 75.1
MS.gene059806.t1 MTR_5g032150 48.529 68 35 0 9 76 2 69 9.52e-16 73.9
MS.gene059806.t1 MTR_2g009890 47.059 68 36 0 9 76 2 69 1.09e-15 74.7
MS.gene059806.t1 MTR_8g033220 49.275 69 35 0 10 78 3 71 1.19e-15 73.6
MS.gene059806.t1 MTR_5g032520 48.529 68 35 0 9 76 2 69 1.23e-15 73.6
MS.gene059806.t1 MTR_8g033220 49.275 69 35 0 10 78 3 71 1.30e-15 73.6
MS.gene059806.t1 MTR_3g437790 31.690 142 82 4 26 159 30 164 2.90e-15 72.0
MS.gene059806.t1 MTR_7g016600 50.725 69 33 1 9 76 2 70 3.41e-15 72.8
MS.gene059806.t1 MTR_5g031000 47.059 68 36 0 9 76 2 69 3.72e-15 72.4
MS.gene059806.t1 MTR_5g031000 47.059 68 36 0 9 76 2 69 3.74e-15 72.8
MS.gene059806.t1 MTR_6g015975 50.725 69 33 1 9 76 2 70 4.06e-15 72.8
MS.gene059806.t1 MTR_5g021270 50.000 70 33 1 9 76 2 71 4.38e-15 72.4
MS.gene059806.t1 MTR_5g021270 50.000 70 33 1 9 76 2 71 4.49e-15 72.4
MS.gene059806.t1 MTR_8g066260 46.377 69 36 1 9 76 2 70 5.09e-15 72.4
MS.gene059806.t1 MTR_7g075870 51.471 68 32 1 10 76 3 70 6.06e-15 71.6
MS.gene059806.t1 MTR_2g461710 53.571 56 26 0 9 64 2 57 6.32e-15 67.4
MS.gene059806.t1 MTR_3g088615 45.714 70 36 1 9 76 2 71 7.35e-15 70.5
MS.gene059806.t1 MTR_5g046790 46.377 69 36 1 9 76 2 70 8.03e-15 71.2
MS.gene059806.t1 MTR_7g016630 44.928 69 37 1 9 76 2 70 9.68e-15 71.6
MS.gene059806.t1 MTR_1g029670 50.000 66 32 1 9 74 2 66 1.35e-14 70.1
MS.gene059806.t1 MTR_7g075850 46.429 84 42 2 9 89 2 85 1.47e-14 71.2
MS.gene059806.t1 MTR_1g038300 50.000 70 33 1 9 76 2 71 1.58e-14 70.9
MS.gene059806.t1 MTR_5g046870 49.275 69 34 1 9 76 2 70 2.41e-14 67.4
MS.gene059806.t1 MTR_4g109810 27.984 243 136 10 9 230 2 226 2.80e-14 70.1
MS.gene059806.t1 MTR_5g066960 49.123 57 29 0 9 65 2 58 3.52e-14 65.5
MS.gene059806.t1 MTR_3g113030 47.619 63 33 0 9 71 2 64 9.36e-14 68.6
MS.gene059806.t1 MTR_4g093030 35.789 95 45 1 9 87 2 96 2.61e-13 65.9
MS.gene059806.t1 MTR_8g097090 47.826 69 35 1 9 76 2 70 2.73e-13 67.4
MS.gene059806.t1 MTR_3g084980 46.377 69 36 1 9 76 2 70 2.91e-13 67.4
MS.gene059806.t1 MTR_3g109930 31.206 141 79 3 27 159 20 150 4.87e-13 65.5
MS.gene059806.t1 MTR_4g036050 41.429 70 40 1 9 77 2 71 1.02e-11 62.0
MS.gene059806.t1 MTR_4g036050 41.429 70 40 1 9 77 2 71 1.02e-11 62.4
MS.gene059806.t1 MTR_4g036050 41.429 70 40 1 9 77 2 71 1.06e-11 62.0
MS.gene059806.t1 MTR_4g036050 41.429 70 40 1 9 77 2 71 1.09e-11 62.4
MS.gene059806.t1 MTR_4g108720 38.043 92 54 2 9 97 2 93 1.82e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059806.t1 AT5G60440 48.148 189 89 4 5 189 3 186 1.37e-51 169
MS.gene059806.t1 AT2G24840 48.428 159 73 3 9 162 63 217 2.32e-41 142
MS.gene059806.t1 AT1G65360 39.683 189 107 3 5 192 3 185 2.88e-41 140
MS.gene059806.t1 AT1G01530 41.237 194 98 4 4 192 2 184 8.52e-40 137
MS.gene059806.t1 AT4G36590 44.578 166 78 4 5 160 3 164 6.58e-36 127
MS.gene059806.t1 AT2G34440 33.951 162 105 2 9 170 2 161 4.03e-25 97.8
MS.gene059806.t1 AT1G72350 34.286 175 79 5 9 182 43 182 5.80e-22 90.9
MS.gene059806.t1 AT3G04100 29.012 162 111 2 2 159 7 168 3.25e-21 88.2
MS.gene059806.t1 AT1G28460 32.500 160 102 3 5 161 4 160 2.92e-20 85.1
MS.gene059806.t1 AT3G66656 41.748 103 59 1 9 110 2 104 3.42e-20 84.7
MS.gene059806.t1 AT1G29962 29.651 172 105 3 5 170 4 165 6.44e-19 81.6
MS.gene059806.t1 AT2G45650 55.882 68 30 0 9 76 2 69 1.22e-18 82.4
MS.gene059806.t1 AT2G45660 54.412 68 31 0 10 77 3 70 1.58e-18 80.1
MS.gene059806.t1 AT5G51870 54.167 72 33 0 5 76 21 92 2.07e-18 80.5
MS.gene059806.t1 AT2G45660 54.412 68 31 0 10 77 3 70 4.02e-18 80.1
MS.gene059806.t1 AT4G22950 52.239 67 32 0 10 76 3 69 6.49e-18 78.6
MS.gene059806.t1 AT5G51870 55.224 67 30 0 10 76 3 69 6.53e-18 79.3
MS.gene059806.t1 AT5G51870 55.224 67 30 0 10 76 3 69 7.35e-18 78.6
MS.gene059806.t1 AT4G24540 37.162 148 76 4 9 156 2 132 1.14e-17 79.3
MS.gene059806.t1 AT5G51870 52.703 74 33 1 3 76 8 79 1.16e-17 79.3
MS.gene059806.t1 AT1G77980 46.067 89 47 1 9 96 2 90 1.32e-17 80.9
MS.gene059806.t1 AT5G51870 55.224 67 30 0 10 76 3 69 1.34e-17 79.0
MS.gene059806.t1 AT4G09960 50.000 68 34 0 9 76 2 69 1.71e-17 78.6
MS.gene059806.t1 AT4G22950 52.239 67 32 0 10 76 3 69 1.90e-17 78.6
MS.gene059806.t1 AT4G22950 52.239 67 32 0 10 76 3 69 1.90e-17 78.6
MS.gene059806.t1 AT4G09960 50.000 68 34 0 9 76 3 70 1.90e-17 79.0
MS.gene059806.t1 AT4G09960 50.000 68 34 0 9 76 2 69 1.91e-17 78.6
MS.gene059806.t1 AT4G09960 50.000 68 34 0 9 76 12 79 2.50e-17 78.6
MS.gene059806.t1 AT1G22130 42.424 99 56 1 9 106 2 100 2.61e-17 80.1
MS.gene059806.t1 AT3G57230 48.529 68 35 0 9 76 2 69 3.25e-17 76.3
MS.gene059806.t1 AT4G09960 50.000 68 34 0 9 76 28 95 3.64e-17 78.6
MS.gene059806.t1 AT2G22540 51.471 68 33 0 9 76 2 69 3.99e-17 78.2
MS.gene059806.t1 AT2G22540 51.471 68 33 0 9 76 2 69 3.99e-17 78.2
MS.gene059806.t1 AT3G57390 52.941 68 32 0 9 76 2 69 5.11e-17 77.4
MS.gene059806.t1 AT5G62165 52.239 67 32 0 10 76 3 69 5.13e-17 74.3
MS.gene059806.t1 AT5G62165 52.239 67 32 0 10 76 3 69 5.64e-17 75.9
MS.gene059806.t1 AT5G62165 52.239 67 32 0 10 76 3 69 5.64e-17 75.9
MS.gene059806.t1 AT5G62165 52.239 67 32 0 10 76 3 69 5.64e-17 75.9
MS.gene059806.t1 AT5G62165 52.239 67 32 0 10 76 3 69 6.27e-17 75.5
MS.gene059806.t1 AT5G62165 52.239 67 32 0 10 76 3 69 6.27e-17 75.5
MS.gene059806.t1 AT5G62165 52.239 67 32 0 10 76 3 69 6.27e-17 75.5
MS.gene059806.t1 AT5G62165 52.239 67 32 0 10 76 3 69 6.27e-17 75.5
MS.gene059806.t1 AT5G62165 52.239 67 32 0 10 76 3 69 6.27e-17 75.5
MS.gene059806.t1 AT3G57230 48.529 68 35 0 9 76 2 69 7.81e-17 77.4
MS.gene059806.t1 AT3G57230 48.529 68 35 0 9 76 2 69 7.81e-17 77.4
MS.gene059806.t1 AT4G37940 50.000 68 34 0 9 76 2 69 8.01e-17 76.6
MS.gene059806.t1 AT5G10140 49.275 69 34 1 9 76 2 70 8.76e-17 75.5
MS.gene059806.t1 AT4G09960 50.000 68 34 0 9 76 97 164 8.79e-17 78.6
MS.gene059806.t1 AT4G37940 50.000 68 34 0 9 76 2 69 9.68e-17 76.6
MS.gene059806.t1 AT5G10140 49.275 69 34 1 9 76 2 70 1.05e-16 75.9
MS.gene059806.t1 AT3G57390 52.941 68 32 0 9 76 2 69 1.21e-16 77.0
MS.gene059806.t1 AT5G10140 49.275 69 34 1 9 76 2 70 1.31e-16 75.9
MS.gene059806.t1 AT4G37940 50.000 68 34 0 9 76 2 69 1.31e-16 75.1
MS.gene059806.t1 AT5G62165 52.239 67 32 0 10 76 3 69 1.45e-16 75.5
MS.gene059806.t1 AT5G62165 52.239 67 32 0 10 76 3 69 1.45e-16 75.5
MS.gene059806.t1 AT5G62165 52.239 67 32 0 10 76 3 69 1.90e-16 75.5
MS.gene059806.t1 AT5G62165 52.239 67 32 0 10 76 3 69 1.90e-16 75.5
MS.gene059806.t1 AT5G62165 52.239 67 32 0 10 76 3 69 1.90e-16 75.5
MS.gene059806.t1 AT5G23260 35.065 154 72 4 5 130 14 167 2.11e-16 76.6
MS.gene059806.t1 AT5G13790 51.471 68 33 0 9 76 2 69 2.36e-16 76.6
MS.gene059806.t1 AT5G13790 51.471 68 33 0 9 76 2 69 2.46e-16 76.3
MS.gene059806.t1 AT5G10140 49.275 69 34 1 9 76 2 70 2.63e-16 74.7
MS.gene059806.t1 AT1G77950 41.573 89 51 1 9 96 2 90 2.76e-16 75.9
MS.gene059806.t1 AT1G77950 41.573 89 51 1 9 96 2 90 2.76e-16 75.9
MS.gene059806.t1 AT1G77950 41.573 89 51 1 9 96 2 90 2.76e-16 75.9
MS.gene059806.t1 AT1G77950 41.573 89 51 1 9 96 2 90 2.76e-16 75.9
MS.gene059806.t1 AT1G47760 34.783 115 65 2 9 115 2 114 2.77e-16 74.7
MS.gene059806.t1 AT3G54340 46.575 73 37 1 9 79 2 74 2.83e-16 75.5
MS.gene059806.t1 AT3G58780 49.296 71 36 0 6 76 14 84 3.76e-16 75.5
MS.gene059806.t1 AT4G18960 48.611 72 37 0 9 80 18 89 3.86e-16 75.5
MS.gene059806.t1 AT5G51860 52.239 67 32 0 10 76 3 69 4.04e-16 74.7
MS.gene059806.t1 AT5G23260 35.333 150 69 4 9 130 2 151 4.31e-16 75.5
MS.gene059806.t1 AT2G42830 50.000 68 34 0 9 76 17 84 4.42e-16 75.5
MS.gene059806.t1 AT3G58780 49.296 71 36 0 6 76 20 90 4.57e-16 75.5
MS.gene059806.t1 AT2G42830 50.000 68 34 0 9 76 17 84 4.69e-16 75.5
MS.gene059806.t1 AT5G51860 52.239 67 32 0 10 76 3 69 5.71e-16 74.3
MS.gene059806.t1 AT2G22630 48.529 68 35 0 9 76 2 69 5.96e-16 74.7
MS.gene059806.t1 AT2G22630 48.529 68 35 0 9 76 2 69 5.96e-16 74.7
MS.gene059806.t1 AT1G69120 37.000 100 55 2 9 100 2 101 6.93e-16 74.7
MS.gene059806.t1 AT3G58780 49.296 71 36 0 6 76 14 84 1.03e-15 74.7
MS.gene059806.t1 AT3G30260 46.377 69 36 1 9 76 2 70 1.10e-15 74.3
MS.gene059806.t1 AT5G23260 50.667 75 35 1 5 77 14 88 1.39e-15 74.3
MS.gene059806.t1 AT1G69120 37.000 100 55 2 9 100 2 101 1.65e-15 73.9
MS.gene059806.t1 AT5G60910 47.826 69 35 1 9 76 2 70 2.73e-15 73.2
MS.gene059806.t1 AT3G61120 51.471 68 33 0 9 76 2 69 3.08e-15 73.2
MS.gene059806.t1 AT5G23260 52.113 71 32 1 9 77 2 72 3.60e-15 72.8
MS.gene059806.t1 AT1G26310 47.826 69 35 1 9 76 2 70 4.03e-15 72.8
MS.gene059806.t1 AT1G28450 28.834 163 107 4 5 161 4 163 4.23e-15 71.6
MS.gene059806.t1 AT4G11880 51.471 68 32 1 10 76 3 70 4.53e-15 71.2
MS.gene059806.t1 AT4G11880 51.471 68 32 1 10 76 3 70 4.53e-15 71.2
MS.gene059806.t1 AT2G14210 47.826 69 35 1 9 76 2 70 4.79e-15 72.4
MS.gene059806.t1 AT1G17310 53.165 79 35 1 8 86 47 123 5.64e-15 71.6
MS.gene059806.t1 AT4G11880 51.471 68 32 1 10 76 3 70 5.72e-15 72.0
MS.gene059806.t1 AT4G11880 51.471 68 32 1 10 76 3 70 5.72e-15 72.0
MS.gene059806.t1 AT2G14210 47.826 69 35 1 9 76 2 70 6.51e-15 72.0
MS.gene059806.t1 AT5G20240 46.575 73 37 1 9 79 2 74 7.45e-15 71.2
MS.gene059806.t1 AT5G15800 50.725 69 33 1 9 76 2 70 8.36e-15 72.0
MS.gene059806.t1 AT5G20240 46.575 73 37 1 9 79 2 74 8.42e-15 69.7
MS.gene059806.t1 AT5G65050 47.826 69 35 1 9 76 2 70 8.56e-15 70.5
MS.gene059806.t1 AT1G17310 53.165 79 35 1 8 86 58 134 8.62e-15 71.6
MS.gene059806.t1 AT2G22540 50.000 68 29 1 9 76 2 64 1.36e-14 71.2
MS.gene059806.t1 AT5G15800 50.725 69 33 1 9 76 2 70 1.43e-14 71.2
MS.gene059806.t1 AT5G65050 47.826 69 35 1 9 76 2 70 1.51e-14 70.1
MS.gene059806.t1 AT5G65050 47.826 69 35 1 9 76 2 70 1.57e-14 69.7
MS.gene059806.t1 AT5G65050 47.826 69 35 1 9 76 2 70 1.60e-14 69.7
MS.gene059806.t1 AT2G03710 50.000 70 33 2 9 76 2 71 4.38e-14 68.9
MS.gene059806.t1 AT5G65060 47.826 69 35 1 9 76 2 70 4.39e-14 68.6
MS.gene059806.t1 AT5G65060 47.826 69 35 1 9 76 2 70 4.50e-14 68.9
MS.gene059806.t1 AT5G65060 47.826 69 35 1 9 76 2 70 5.59e-14 68.6
MS.gene059806.t1 AT1G71692 47.143 70 36 1 9 77 2 71 8.30e-14 68.6
MS.gene059806.t1 AT2G03710 50.000 70 33 2 9 76 2 71 8.58e-14 69.3
MS.gene059806.t1 AT2G03710 50.000 70 33 2 9 76 2 71 9.03e-14 69.3
MS.gene059806.t1 AT3G58780 51.667 60 29 0 6 65 14 73 9.52e-14 68.9
MS.gene059806.t1 AT3G58780 51.667 60 29 0 6 65 14 73 1.33e-13 68.9
MS.gene059806.t1 AT3G02310 46.377 69 36 1 9 76 2 70 1.37e-13 67.8
MS.gene059806.t1 AT3G02310 46.377 69 36 1 9 76 2 70 1.91e-13 68.2
MS.gene059806.t1 AT1G24260 55.357 56 25 0 9 64 2 57 2.20e-13 67.8
MS.gene059806.t1 AT1G24260 55.357 56 25 0 9 64 2 57 2.29e-13 67.8
MS.gene059806.t1 AT1G24260 55.357 56 25 0 9 64 2 57 2.34e-13 67.8
MS.gene059806.t1 AT5G65070 43.478 69 38 1 9 76 2 70 2.41e-13 67.0
MS.gene059806.t1 AT5G65070 43.478 69 38 1 9 76 2 70 2.48e-13 65.9
MS.gene059806.t1 AT5G65070 43.478 69 38 1 9 76 2 70 4.65e-13 66.6
MS.gene059806.t1 AT5G65070 43.478 69 38 1 9 76 2 70 7.72e-13 65.9
MS.gene059806.t1 AT5G65070 49.123 57 29 0 9 65 2 58 2.00e-12 65.1
MS.gene059806.t1 AT1G18750 40.000 75 43 1 9 81 2 76 3.29e-12 65.5
MS.gene059806.t1 AT1G18750 40.000 75 43 1 9 81 2 76 4.22e-12 65.5
MS.gene059806.t1 AT1G18750 40.000 75 43 1 9 81 2 76 4.31e-12 65.5
MS.gene059806.t1 AT5G65080 42.029 69 39 1 9 76 9 77 1.06e-11 62.4
MS.gene059806.t1 AT4G37435 42.254 71 40 1 9 78 2 72 2.13e-11 61.2
MS.gene059806.t1 AT5G65080 48.148 54 28 0 9 62 9 62 3.00e-11 61.2
MS.gene059806.t1 AT5G27130 41.975 81 43 2 6 82 10 90 4.24e-11 62.0
MS.gene059806.t1 AT2G03060 25.620 242 131 12 9 207 2 237 4.94e-11 62.0
MS.gene059806.t1 AT2G03060 25.620 242 131 12 9 207 2 237 5.78e-11 62.0
MS.gene059806.t1 AT2G03060 25.620 242 131 12 9 207 2 237 5.78e-11 62.0
MS.gene059806.t1 AT2G03060 25.620 242 131 12 9 207 2 237 5.78e-11 62.0

Find 56 sgRNAs with CRISPR-Local

Find 69 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCCATGATGCCATCATTT+TGG 0.152250 2.4:+18759052 None:intergenic
TTTGTTTGGTTTCAACAATA+TGG 0.241179 2.4:-18758644 MS.gene059806:CDS
TTGTTGAAACCAAACAAATT+AGG 0.245759 2.4:+18758649 None:intergenic
CCCCATTCATCTTTCGTTGT+TGG 0.261530 2.4:+18758926 None:intergenic
TCTATGACCGTTTCAACATT+TGG 0.309906 2.4:+18759099 None:intergenic
TTTGATTCTTGTTGAGGATT+TGG 0.321722 2.4:+18758709 None:intergenic
TGTTGGACAACATGCTAATA+TGG 0.327440 2.4:-18758815 MS.gene059806:CDS
TGATGGCATCATGGAATTCA+TGG 0.359601 2.4:-18759046 MS.gene059806:CDS
ATGTTGCAACCTAATTTGTT+TGG 0.363366 2.4:-18758658 MS.gene059806:CDS
GGATTTGGTTGATGCTCAAT+AGG 0.364425 2.4:+18758724 None:intergenic
GAGGATCTTCAGAAACTTGT+TGG 0.372862 2.4:-18758832 MS.gene059806:CDS
AGCGAGCTTTGCACCCTTTG+TGG 0.373521 2.4:-18759180 MS.gene059806:CDS
TTGTTTGGTTTCAACAATAT+GGG 0.386179 2.4:-18758643 MS.gene059806:CDS
TGATTTATTAAAGAAGGCTT+TGG 0.388057 2.4:-18758854 MS.gene059806:CDS
CCAACTTGATTTATTAAAGA+AGG 0.389126 2.4:-18758860 MS.gene059806:CDS
TGCTAATATGGTTGAAATGC+AGG 0.404469 2.4:-18758803 MS.gene059806:CDS
TCCCATTGATGAGATGAATA+TGG 0.418270 2.4:-18758884 MS.gene059806:CDS
GACCATATTCATCTCATCAA+TGG 0.429531 2.4:+18758882 None:intergenic
AACAAATTAGGTTGCAACAT+AGG 0.446627 2.4:+18758661 None:intergenic
AACAATATGGGAGGAGAAGA+TGG 0.453701 2.4:-18758631 MS.gene059806:CDS
GCCAACAACGAAAGATGAAT+GGG 0.457149 2.4:-18758927 MS.gene059806:CDS
GGAAAATTTGATTCTTGTTG+AGG 0.459812 2.4:+18758703 None:intergenic
ACAAATTAGGTTGCAACATA+GGG 0.464364 2.4:+18758662 None:intergenic
TTTATTAAAGAAGGCTTTGG+AGG 0.489471 2.4:-18758851 MS.gene059806:CDS
ACCATATTCATCTCATCAAT+GGG 0.490788 2.4:+18758883 None:intergenic
GAAGATGGACATGGTCCTCA+TGG 0.494228 2.4:-18758616 MS.gene059806:CDS
GTTGGCTCAGCTCATTCTCA+CGG 0.502310 2.4:+18758944 None:intergenic
AGCCAACAACGAAAGATGAA+TGG 0.503597 2.4:-18758928 MS.gene059806:CDS
TGGTTATCCAAATGTTGAAA+CGG 0.505688 2.4:-18759106 MS.gene059806:CDS
CTGATCCCACCCCAAAATGA+TGG 0.513576 2.4:-18759063 MS.gene059806:CDS
AGCAATATATGCACCACAAA+GGG 0.515612 2.4:+18759167 None:intergenic
CCTTCTTTAATAAATCAAGT+TGG 0.517926 2.4:+18758860 None:intergenic
ACAAAGGGTGCAAAGCTCGC+TGG 0.525634 2.4:+18759182 None:intergenic
GCTCACGCACCTTGGCTCTA+CGG 0.536826 2.4:+18759016 None:intergenic
ACCCCAAAATGATGGCATCA+TGG 0.541533 2.4:-18759055 MS.gene059806:CDS
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 2.4:-18759218 MS.gene059806:CDS
GCCAAGGTGCGTGAGCTCAA+TGG 0.556002 2.4:-18759009 MS.gene059806:CDS
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 2.4:-18759219 MS.gene059806:CDS
ACCATTGAGCTCACGCACCT+TGG 0.575766 2.4:+18759008 None:intergenic
GCTAATATGGTTGAAATGCA+GGG 0.602624 2.4:-18758802 MS.gene059806:CDS
TTTGGTTTCAACAATATGGG+AGG 0.603714 2.4:-18758640 MS.gene059806:CDS
AAGATGGACATGGTCCTCAT+GGG 0.606190 2.4:-18758615 MS.gene059806:CDS
TTGATGCTCAATAGGCATGT+TGG 0.609005 2.4:+18758732 None:intergenic
CTTTCTTGAAGAGCCCACTA+CGG 0.610979 2.4:+18759205 None:intergenic
TATATTCTCACCTAGTGAGA+AGG 0.611194 2.4:-18759139 MS.gene059806:CDS
GGAGGATTTCCGTAGAGCCA+AGG 0.615589 2.4:-18759025 MS.gene059806:CDS
GAGCAATATATGCACCACAA+AGG 0.629097 2.4:+18759166 None:intergenic
ATGCTCAATAGGCATGTTGG+AGG 0.637536 2.4:+18758735 None:intergenic
AATGAAAATACCTTCTCACT+AGG 0.637760 2.4:+18759129 None:intergenic
TGTGCATTAGCCATGTCGGG+CGG 0.650518 2.4:-18759309 None:intergenic
CCAACAACGAAAGATGAATG+GGG 0.679618 2.4:-18758926 MS.gene059806:CDS
CAACAACGAAAGATGAATGG+GGG 0.695270 2.4:-18758925 MS.gene059806:CDS
ATGGGAGGAGAAGATGGACA+TGG 0.698479 2.4:-18758625 MS.gene059806:CDS
TCGGGCGGAAAGAAAACTCG+AGG 0.699514 2.4:-18759294 MS.gene059806:CDS
TCAGATCAAATGAACCCATG+AGG 0.726460 2.4:+18758601 None:intergenic
TGGCATCATGGAATTCATGG+AGG 0.743879 2.4:-18759043 MS.gene059806:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ATTTCCAACAAAAAATGGAA+GGG + chr2.4:18759141-18759160 None:intergenic 25.0%
! CCAACTTGATTTATTAAAGA+AGG - chr2.4:18759043-18759062 MS.gene059806:CDS 25.0%
! CCTTCTTTAATAAATCAAGT+TGG + chr2.4:18759046-18759065 None:intergenic 25.0%
! TGATTTATTAAAGAAGGCTT+TGG - chr2.4:18759049-18759068 MS.gene059806:CDS 25.0%
! TTGTTGAAACCAAACAAATT+AGG + chr2.4:18759257-18759276 None:intergenic 25.0%
!! TTGTTTGGTTTCAACAATAT+GGG - chr2.4:18759260-18759279 MS.gene059806:CDS 25.0%
!! TTTGTTTGGTTTCAACAATA+TGG - chr2.4:18759259-18759278 MS.gene059806:CDS 25.0%
AATGAAAATACCTTCTCACT+AGG + chr2.4:18758777-18758796 None:intergenic 30.0%
ACCATATTCATCTCATCAAT+GGG + chr2.4:18759023-18759042 None:intergenic 30.0%
CATTTCCAACAAAAAATGGA+AGG + chr2.4:18759142-18759161 None:intergenic 30.0%
GAACCATTTCCAACAAAAAA+TGG + chr2.4:18759146-18759165 None:intergenic 30.0%
GGAAAATTTGATTCTTGTTG+AGG + chr2.4:18759203-18759222 None:intergenic 30.0%
TGGTTATCCAAATGTTGAAA+CGG - chr2.4:18758797-18758816 MS.gene059806:CDS 30.0%
TTTGATTCTTGTTGAGGATT+TGG + chr2.4:18759197-18759216 None:intergenic 30.0%
! AACAAATTAGGTTGCAACAT+AGG + chr2.4:18759245-18759264 None:intergenic 30.0%
! ACAAATTAGGTTGCAACATA+GGG + chr2.4:18759244-18759263 None:intergenic 30.0%
! TTTATTAAAGAAGGCTTTGG+AGG - chr2.4:18759052-18759071 MS.gene059806:CDS 30.0%
!! ATGTTGCAACCTAATTTGTT+TGG - chr2.4:18759245-18759264 MS.gene059806:CDS 30.0%
!!! AGTGAGAAGGTATTTTCATT+TGG - chr2.4:18758777-18758796 MS.gene059806:CDS 30.0%
!!! CTTCCATTTTTTGTTGGAAA+TGG - chr2.4:18759140-18759159 MS.gene059806:CDS 30.0%
AACAAAAAATGGAAGGGCTT+GGG + chr2.4:18759135-18759154 None:intergenic 35.0%
AGCAATATATGCACCACAAA+GGG + chr2.4:18758739-18758758 None:intergenic 35.0%
GACCATATTCATCTCATCAA+TGG + chr2.4:18759024-18759043 None:intergenic 35.0%
GCTAATATGGTTGAAATGCA+GGG - chr2.4:18759101-18759120 MS.gene059806:CDS 35.0%
TATATTCTCACCTAGTGAGA+AGG - chr2.4:18758764-18758783 MS.gene059806:CDS 35.0%
TCCCATTGATGAGATGAATA+TGG - chr2.4:18759019-18759038 MS.gene059806:CDS 35.0%
TCTATGACCGTTTCAACATT+TGG + chr2.4:18758807-18758826 None:intergenic 35.0%
TGCTAATATGGTTGAAATGC+AGG - chr2.4:18759100-18759119 MS.gene059806:CDS 35.0%
TGTTGGACAACATGCTAATA+TGG - chr2.4:18759088-18759107 MS.gene059806:CDS 35.0%
! ATTCCATGATGCCATCATTT+TGG + chr2.4:18758854-18758873 None:intergenic 35.0%
! TTCCATGATGCCATCATTTT+GGG + chr2.4:18758853-18758872 None:intergenic 35.0%
! TTTGGTTTCAACAATATGGG+AGG - chr2.4:18759263-18759282 MS.gene059806:CDS 35.0%
AACAATATGGGAGGAGAAGA+TGG - chr2.4:18759272-18759291 MS.gene059806:CDS 40.0%
AGCCAACAACGAAAGATGAA+TGG - chr2.4:18758975-18758994 MS.gene059806:CDS 40.0%
CAACAAAAAATGGAAGGGCT+TGG + chr2.4:18759136-18759155 None:intergenic 40.0%
CAACAACGAAAGATGAATGG+GGG - chr2.4:18758978-18758997 MS.gene059806:CDS 40.0%
CCAACAACGAAAGATGAATG+GGG - chr2.4:18758977-18758996 MS.gene059806:CDS 40.0%
GAGCAATATATGCACCACAA+AGG + chr2.4:18758740-18758759 None:intergenic 40.0%
GAGGATCTTCAGAAACTTGT+TGG - chr2.4:18759071-18759090 MS.gene059806:CDS 40.0%
GCCAACAACGAAAGATGAAT+GGG - chr2.4:18758976-18758995 MS.gene059806:CDS 40.0%
GGGTTATGAAAAAACTCAGC+TGG + chr2.4:18759224-18759243 None:intergenic 40.0%
TGATGGCATCATGGAATTCA+TGG - chr2.4:18758857-18758876 MS.gene059806:CDS 40.0%
TTGATGCTCAATAGGCATGT+TGG + chr2.4:18759174-18759193 None:intergenic 40.0%
! GGATTTGGTTGATGCTCAAT+AGG + chr2.4:18759182-18759201 None:intergenic 40.0%
! TCCATGATGCCATCATTTTG+GGG + chr2.4:18758852-18758871 None:intergenic 40.0%
!!! CAAGCCCTTCCATTTTTTGT+TGG - chr2.4:18759134-18759153 MS.gene059806:CDS 40.0%
AAGATGGACATGGTCCTCAT+GGG - chr2.4:18759288-18759307 MS.gene059806:CDS 45.0%
ACCCCAAAATGATGGCATCA+TGG - chr2.4:18758848-18758867 MS.gene059806:CDS 45.0%
ATGCTCAATAGGCATGTTGG+AGG + chr2.4:18759171-18759190 None:intergenic 45.0%
CCCCATTCATCTTTCGTTGT+TGG + chr2.4:18758980-18758999 None:intergenic 45.0%
CTTTCTTGAAGAGCCCACTA+CGG + chr2.4:18758701-18758720 None:intergenic 45.0%
TGGCATCATGGAATTCATGG+AGG - chr2.4:18758860-18758879 MS.gene059806:CDS 45.0%
! AGATGAATGGGGGTCAGTTT+TGG - chr2.4:18758988-18759007 MS.gene059806:CDS 45.0%
!! ATGATGCCATCATTTTGGGG+TGG + chr2.4:18758849-18758868 None:intergenic 45.0%
!!! TGATGCCATCATTTTGGGGT+GGG + chr2.4:18758848-18758867 None:intergenic 45.0%
ATGGGAGGAGAAGATGGACA+TGG - chr2.4:18759278-18759297 MS.gene059806:CDS 50.0%
CTGATCCCACCCCAAAATGA+TGG - chr2.4:18758840-18758859 MS.gene059806:CDS 50.0%
GAAGATGGACATGGTCCTCA+TGG - chr2.4:18759287-18759306 MS.gene059806:CDS 50.0%
! GTTGGCTCAGCTCATTCTCA+CGG + chr2.4:18758962-18758981 None:intergenic 50.0%
!! TGAATGGGGGTCAGTTTTGG+TGG - chr2.4:18758991-18759010 MS.gene059806:CDS 50.0%
ACCATTGAGCTCACGCACCT+TGG + chr2.4:18758898-18758917 None:intergenic 55.0%
AGCGAGCTTTGCACCCTTTG+TGG - chr2.4:18758723-18758742 MS.gene059806:CDS 55.0%
GGAGGATTTCCGTAGAGCCA+AGG - chr2.4:18758878-18758897 MS.gene059806:CDS 55.0%
TCGGGCGGAAAGAAAACTCG+AGG - chr2.4:18758609-18758628 MS.gene059806:CDS 55.0%
! ACAAAGGGTGCAAAGCTCGC+TGG + chr2.4:18758724-18758743 None:intergenic 55.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG - chr2.4:18758684-18758703 MS.gene059806:CDS 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG - chr2.4:18758685-18758704 MS.gene059806:CDS 55.0%
GCCAAGGTGCGTGAGCTCAA+TGG - chr2.4:18758894-18758913 MS.gene059806:CDS 60.0%
!! GCTCACGCACCTTGGCTCTA+CGG + chr2.4:18758890-18758909 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 18758606 18759319 18758606 ID=MS.gene059806
chr2.4 mRNA 18758606 18759319 18758606 ID=MS.gene059806.t1;Parent=MS.gene059806
chr2.4 exon 18758606 18759319 18758606 ID=MS.gene059806.t1.exon1;Parent=MS.gene059806.t1
chr2.4 CDS 18758606 18759319 18758606 ID=cds.MS.gene059806.t1;Parent=MS.gene059806.t1
Gene Sequence

>MS.gene059806

ATGTCGGGCGGAAAGAAAACTCGAGGTCGTCAAAAGATTGAGATGAAAAAGATGAGCAATGAAAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGCGAGCTTTGCACCCTTTGTGGTGCATATATTGCTCTAATTATATTCTCACCTAGTGAGAAGGTATTTTCATTTGGTTATCCAAATGTTGAAACGGTCATAGATCGTTATCTGTCTCTGATCCCACCCCAAAATGATGGCATCATGGAATTCATGGAGGATTTCCGTAGAGCCAAGGTGCGTGAGCTCAATGGTATATTGACTCGTATGAACGATGCAATAGACATTGACAAGAACCGTGAGAATGAGCTGAGCCAACAACGAAAGATGAATGGGGGTCAGTTTTGGTGGACTCGTCCCATTGATGAGATGAATATGGTCCAACTTGATTTATTAAAGAAGGCTTTGGAGGATCTTCAGAAACTTGTTGGACAACATGCTAATATGGTTGAAATGCAGGGTACTTCTACCCAAGCCCTTCCATTTTTTGTTGGAAATGGTTCATCCTCCAACATGCCTATTGAGCATCAACCAAATCCTCAACAAGAATCAAATTTTCCAGCTGAGTTTTTTCATAACCCTATGTTGCAACCTAATTTGTTTGGTTTCAACAATATGGGAGGAGAAGATGGACATGGTCCTCATGGGTTCATTTGA
Protein sequence

>MS.gene059806.t1

MSGGKKTRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGAYIALIIFSPSEKVFSFGYPNVETVIDRYLSLIPPQNDGIMEFMEDFRRAKVRELNGILTRMNDAIDIDKNRENELSQQRKMNGGQFWWTRPIDEMNMVQLDLLKKALEDLQKLVGQHANMVEMQGTSTQALPFFVGNGSSSNMPIEHQPNPQQESNFPAEFFHNPMLQPNLFGFNNMGGEDGHGPHGFI