AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene059859

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059859.t1 MTR_2g079740 96.408 863 11 5 1 848 1 858 0.0 1705
MS.gene059859.t1 MTR_7g060420 51.705 528 216 8 202 719 269 767 1.06e-162 501
MS.gene059859.t1 MTR_8g100005 33.813 834 416 25 25 848 7 714 5.55e-133 414
MS.gene059859.t1 MTR_3g491920 42.413 547 257 14 321 848 195 702 6.86e-129 402
MS.gene059859.t1 MTR_1g007740 43.714 517 239 16 339 845 232 706 2.94e-123 390
MS.gene059859.t1 MTR_8g092890 36.852 521 238 9 340 848 204 645 3.59e-95 312
MS.gene059859.t1 MTR_3g095780 37.115 520 257 10 340 848 168 628 4.76e-91 300
MS.gene059859.t1 MTR_8g100005 33.274 565 288 15 25 589 7 482 2.25e-84 279
MS.gene059859.t1 MTR_4g119620 31.390 223 137 9 466 682 65 277 2.10e-24 105
MS.gene059859.t1 MTR_1g072140 29.954 217 130 10 475 682 65 268 1.25e-18 88.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059859.t1 AT3G15470 58.250 903 286 19 14 848 4 883 0.0 920
MS.gene059859.t1 AT5G54200 57.907 860 287 13 9 848 21 825 0.0 911
MS.gene059859.t1 AT2G37670 52.037 540 190 11 202 718 249 742 6.92e-161 492
MS.gene059859.t1 AT2G37670 52.037 540 190 11 202 718 248 741 7.11e-161 492
MS.gene059859.t1 AT5G02430 52.290 524 222 8 202 719 258 759 1.21e-156 481
MS.gene059859.t1 AT5G53500 41.958 572 245 16 284 846 159 652 1.04e-120 380
MS.gene059859.t1 AT5G53500 41.958 572 245 16 284 846 159 652 1.04e-120 380
MS.gene059859.t1 AT5G24320 41.101 545 250 12 321 848 204 694 1.74e-115 367
MS.gene059859.t1 AT5G24320 40.801 549 250 13 321 848 204 698 2.56e-113 362
MS.gene059859.t1 AT5G42010 40.000 530 242 14 342 848 233 709 5.60e-112 358
MS.gene059859.t1 AT1G64610 39.804 510 248 13 342 848 194 647 5.30e-108 346
MS.gene059859.t1 AT1G64610 39.804 510 248 13 342 848 194 647 5.30e-108 346
MS.gene059859.t1 AT5G42010 47.447 333 161 8 342 672 233 553 1.12e-89 295
MS.gene059859.t1 AT1G48870 33.333 507 249 9 340 845 172 590 1.16e-85 285
MS.gene059859.t1 AT1G48870 33.333 507 249 9 340 845 172 590 1.16e-85 285
MS.gene059859.t1 AT1G48870 33.333 507 249 9 340 845 172 590 1.16e-85 285
MS.gene059859.t1 AT4G02730 29.224 219 138 10 475 686 81 289 2.31e-20 94.0
MS.gene059859.t1 AT3G49660 28.636 220 141 9 470 683 62 271 4.87e-20 92.4
MS.gene059859.t1 AT3G49660 24.198 343 206 13 353 682 11 312 8.13e-13 70.9
MS.gene059859.t1 AT2G16405 25.410 244 146 9 464 682 199 431 1.73e-12 71.2

Find 236 sgRNAs with CRISPR-Local

Find 395 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAGAACTTTCCAAAATTT+TGG 0.114825 2.2:+15545177 MS.gene059859:CDS
AATATGTTATTTCTTGTTAA+TGG 0.154159 2.2:+15541457 MS.gene059859:CDS
AAACCCGTTTGCTCCTTTAA+AGG 0.187744 2.2:+15541619 MS.gene059859:CDS
GATCTGGTTCATAAGTTTAA+AGG 0.211448 2.2:+15544460 MS.gene059859:CDS
TTTCTTGGTCTTCGTCTTCT+TGG 0.228579 2.2:-15540361 None:intergenic
GAAGTGGCAATCCAAAATTT+TGG 0.230511 2.2:-15545188 None:intergenic
ATACTTCATTAGTGGATCTT+TGG 0.232896 2.2:+15543852 MS.gene059859:CDS
TCCATTATCAAGATCTCTTA+TGG 0.253771 2.2:-15540813 None:intergenic
GAATGCGATGAAATTGAAAA+AGG 0.255746 2.2:+15540773 MS.gene059859:CDS
ATCATGCAAATGACCTTTAA+AGG 0.262544 2.2:-15541632 None:intergenic
AGTATTAAGTTTAGTTTAGA+TGG 0.278056 2.2:+15541322 MS.gene059859:CDS
CCCTTAACAGTTACGACATA+TGG 0.289130 2.2:+15540417 MS.gene059859:CDS
AAGCTCATAATGGATCAATT+TGG 0.292538 2.2:+15541299 MS.gene059859:CDS
TCAAATCACAAGAAAATTAC+TGG 0.302245 2.2:+15544276 MS.gene059859:CDS
AGTACTGTTCCCGGTAATTC+TGG 0.305266 2.2:+15540641 MS.gene059859:CDS
TCCTTTGGCGGATAATCTTC+TGG 0.309791 2.2:+15541504 MS.gene059859:CDS
TTCCGGTGTTGATTTCTTGC+CGG 0.310114 2.2:+15540715 MS.gene059859:CDS
GGGGAATTCTTCTACTTTGC+CGG 0.310297 2.2:+15540736 MS.gene059859:CDS
TGGTAATGGAGGTTGTTCTA+AGG 0.310884 2.2:+15541033 MS.gene059859:CDS
TCTTCTAGAAGAATTCTTTC+CGG 0.314096 2.2:-15540687 None:intergenic
CAAGAAAATTACTGGTTTCC+AGG 0.315246 2.2:+15544284 MS.gene059859:CDS
ATATGTTATTTCTTGTTAAT+GGG 0.320409 2.2:+15541458 MS.gene059859:CDS
AGGGTGAGAGTGAGACAATA+TGG 0.320663 2.2:+15541229 MS.gene059859:CDS
GAAAGGGGAGTTGTTGCTTA+TGG 0.321504 2.2:+15541411 MS.gene059859:CDS
CGGATCGACAAGTTGTTGAT+TGG 0.329763 2.2:+15543902 MS.gene059859:CDS
ACCCGTGACGTTGTCTCCTT+TGG 0.330639 2.2:+15541489 MS.gene059859:CDS
CGGGGATCCGCCAGAATTAC+CGG 0.330665 2.2:-15540651 None:intergenic
GTCAGATTTGGATCGGAATA+TGG 0.333292 2.2:-15540549 None:intergenic
GGAGACAACGTCACGGGTTC+CGG 0.336795 2.2:-15541484 None:intergenic
AATGAGAATGGGTTTGTTCA+TGG 0.340709 2.2:-15540210 None:intergenic
GCCGGTGGTGGTGTTGGAAA+TGG 0.352022 2.2:+15541004 MS.gene059859:CDS
CCTCTCTTGGTCTAAGTCTC+AGG 0.354450 2.2:+15541663 MS.gene059859:CDS
ACTCGTCTTCTTCAAACTAT+TGG 0.355721 2.2:+15540473 MS.gene059859:CDS
AGCCATTCCCTGGCCTGGTA+TGG 0.363748 2.2:+15544807 MS.gene059859:CDS
GAGGGTTCACGATCTGCTTC+AGG 0.366525 2.2:+15544949 MS.gene059859:CDS
GTCAGTATGGATTTCACAAA+TGG 0.367312 2.2:+15545093 MS.gene059859:CDS
AGTCAAGATGGTTCATTTCA+TGG 0.367746 2.2:+15541199 MS.gene059859:CDS
AAAGTGAAGGAGGTTGGTAC+TGG 0.368514 2.2:+15540881 MS.gene059859:CDS
GATGATAGATACTTCATTAG+TGG 0.371354 2.2:+15543844 MS.gene059859:CDS
TCCGGTGTTGATTTCTTGCC+GGG 0.372760 2.2:+15540716 MS.gene059859:CDS
ACCATAAGAGATCTTGATAA+TGG 0.372863 2.2:+15540812 MS.gene059859:CDS
GGTGACACCTTTACTTCTGT+TGG 0.380370 2.2:-15544740 None:intergenic
TAGTAGGAAGTCGTTGAGTT+TGG 0.382361 2.2:+15541555 MS.gene059859:CDS
TCAAAGCCCTCGTGTCAGTA+TGG 0.385856 2.2:+15545080 MS.gene059859:CDS
TCCATATGTCGTAACTGTTA+AGG 0.386442 2.2:-15540418 None:intergenic
ATGGCATTGTAAGGTGGGAT+TGG 0.388194 2.2:-15540530 None:intergenic
TATCATCAACAGGATTAAAC+TGG 0.390022 2.2:-15543828 None:intergenic
CGCATAAGCTCCTGCACAAT+CGG 0.393774 2.2:-15540950 None:intergenic
ACTTCTGTTGGGCCTGCAAT+CGG 0.398774 2.2:-15544728 None:intergenic
GTGACACCTTTACTTCTGTT+GGG 0.400336 2.2:-15544739 None:intergenic
TTCGTCTTCTTGGTCAGAGT+TGG 0.402171 2.2:-15540351 None:intergenic
GCCTGGTATGGGTGATGCAT+GGG 0.403215 2.2:+15544819 MS.gene059859:CDS
GTTGTTGCTTATGGAGAAAC+AGG 0.403691 2.2:+15541420 MS.gene059859:CDS
AGTACTTCTGATGAACTTCC+TGG 0.405091 2.2:-15544394 None:intergenic
GTGAAAGAAGTTAGAGAAGA+TGG 0.405227 2.2:+15540848 MS.gene059859:CDS
GTTGATGTTGTTGTTGGAGT+TGG 0.406911 2.2:-15540244 None:intergenic
GGCCTGGTATGGGTGATGCA+TGG 0.409184 2.2:+15544818 MS.gene059859:CDS
ACCACGTGAAAGGGCAAAAT+CGG 0.410979 2.2:-15540504 None:intergenic
CCATATGTCGTAACTGTTAA+GGG 0.412326 2.2:-15540417 None:intergenic
CAAGAGATTCAAGCTCATAA+TGG 0.414387 2.2:+15541289 MS.gene059859:CDS
GTTGTTATGACCGTCAGATT+TGG 0.414968 2.2:-15540561 None:intergenic
GTTGGTGTTGATGTTGTTGT+TGG 0.416733 2.2:-15540250 None:intergenic
TTCCGGACGGAGGTTTAGCC+GGG 0.417860 2.2:-15540670 None:intergenic
GATTCATGTTTGGCAGGTTG+TGG 0.418930 2.2:+15541378 MS.gene059859:CDS
TTTACAGTGAAAATGTTCAT+AGG 0.422742 2.2:-15544773 None:intergenic
ATGATGTGCTTGACCTCTCT+TGG 0.423598 2.2:+15541650 MS.gene059859:CDS
TTGTGGAGTCTGAGAGGAAA+GGG 0.424221 2.2:+15541395 MS.gene059859:CDS
TTCTTCTACTTTGCCGGACA+CGG 0.424991 2.2:+15540742 MS.gene059859:CDS
ATTCGTAGAAGAAATCTTGT+TGG 0.429715 2.2:-15540280 None:intergenic
AATGTAAATAGTACTGTTCC+CGG 0.431742 2.2:+15540632 MS.gene059859:CDS
AGGATTGTGTGATTCATGTT+TGG 0.432003 2.2:+15541368 MS.gene059859:CDS
AGTGAGTGCAAACACATGTT+CGG 0.432044 2.2:-15541593 None:intergenic
AGGATTCCCATGTATACATC+TGG 0.438205 2.2:+15544695 MS.gene059859:CDS
TACTGGGAGACAGTTGACTA+TGG 0.438212 2.2:+15540898 MS.gene059859:CDS
TTGTTATACACCTGATGGTC+AGG 0.439552 2.2:+15543954 MS.gene059859:CDS
GATCGGAATATGGCATTGTA+AGG 0.442136 2.2:-15540539 None:intergenic
CTGTGAGGGAGGCTGAAATC+TGG 0.442676 2.2:-15544642 None:intergenic
TGTCTCACTCTCACCCTCTC+AGG 0.442951 2.2:-15541223 None:intergenic
CTTGAACCAACCTGACCATC+AGG 0.443778 2.2:-15543964 None:intergenic
GTTGAGTTTGGACCAGTTTG+TGG 0.447377 2.2:+15541567 MS.gene059859:CDS
TGGCATTGTAAGGTGGGATT+GGG 0.449165 2.2:-15540529 None:intergenic
AGGGGAGGTCGTCCGTTAGT+AGG 0.450408 2.2:+15541539 MS.gene059859:CDS
GCCATTCCCTGGCCTGGTAT+GGG 0.450820 2.2:+15544808 MS.gene059859:CDS
CTTCTGGAGAGGAAGAGAAA+GGG 0.453072 2.2:+15541520 MS.gene059859:CDS
GGTTCGCATATGGAGCATTC+CGG 0.453183 2.2:+15543882 MS.gene059859:CDS
TAGTTCAATGGCGGGTCATA+AGG 0.453276 2.2:+15541102 MS.gene059859:CDS
TCTCGAATACGGGTTGTTGA+TGG 0.453927 2.2:+15544433 MS.gene059859:CDS
ATGAAGTATCTATCATCAAC+AGG 0.454580 2.2:-15543838 None:intergenic
TGGATGCTAAGGTTCGCATA+TGG 0.456377 2.2:+15543872 MS.gene059859:CDS
GTCGTTGTTGCTATCAAGCT+CGG 0.457779 2.2:-15544872 None:intergenic
TAGTGGATCTTTGGATGCTA+AGG 0.458377 2.2:+15543861 MS.gene059859:CDS
ATGACCTTTAAAGGAGCAAA+CGG 0.460221 2.2:-15541623 None:intergenic
AGAGATACTTCGTCGGAGAA+AGG 0.460899 2.2:+15541145 MS.gene059859:CDS
GGGTGAGAGTGAGACAATAT+GGG 0.461483 2.2:+15541230 MS.gene059859:CDS
TCTTCTAGAAGAAGTCATTC+CGG 0.463152 2.2:+15540698 MS.gene059859:CDS
AGTAGAAGAAGAGATAAAAC+AGG 0.465592 2.2:-15540606 None:intergenic
GCACTTGCTCTCATCTTCAA+TGG 0.466256 2.2:+15543295 MS.gene059859:intron
GGTTGTTGATGGTATTGATC+TGG 0.466728 2.2:+15544444 MS.gene059859:CDS
TGCATCACCCATACCAGGCC+AGG 0.466953 2.2:-15544815 None:intergenic
CCGGTGGTGGTGTTGGAAAT+GGG 0.467471 2.2:+15541005 MS.gene059859:CDS
GGTAATGGAGGTTGTTCTAA+GGG 0.468975 2.2:+15541034 MS.gene059859:CDS
AATCTTGTTGGTCTAGTTGT+TGG 0.470295 2.2:-15540268 None:intergenic
CATTCTATCTCACCCGTGTC+CGG 0.470328 2.2:-15540755 None:intergenic
GTGAGTGCAAACACATGTTC+GGG 0.470370 2.2:-15541592 None:intergenic
GGAAGAAGAAAGGAGGGAGT+TGG 0.471803 2.2:+15541056 MS.gene059859:CDS
CGGTAATTCTGGCGGATCCC+CGG 0.475497 2.2:+15540652 MS.gene059859:CDS
CATGTTCGGGAACCACAAAC+TGG 0.476756 2.2:-15541579 None:intergenic
GTATTAAGTTTAGTTTAGAT+GGG 0.476966 2.2:+15541323 MS.gene059859:CDS
TTGTGTGATTCATGTTTGGC+AGG 0.477071 2.2:+15541372 MS.gene059859:CDS
TTTCCGGACGGAGGTTTAGC+CGG 0.477265 2.2:-15540671 None:intergenic
AAGAGGAGAGAGAGAGTAAA+CGG 0.478902 2.2:-15540310 None:intergenic
TCAGTAGCCATTCCCTGGCC+TGG 0.479922 2.2:+15544802 MS.gene059859:CDS
CATCTGCTGATTCTCGAATA+CGG 0.481379 2.2:+15544422 MS.gene059859:CDS
ATATTTACCATTTGCTGTGA+GGG 0.481702 2.2:-15544656 None:intergenic
CGTGACGTTGTCTCCTTTGG+CGG 0.482687 2.2:+15541492 MS.gene059859:CDS
ACCGGTGATGTAGCCGGTGG+TGG 0.485090 2.2:+15540992 MS.gene059859:CDS
TGTCATTTATATAATACATC+TGG 0.485507 2.2:+15544089 MS.gene059859:CDS
TCAGCCTCCCTCACAGCAAA+TGG 0.486149 2.2:+15544649 MS.gene059859:CDS
TGTTCTAAGGGGAAGAAGAA+AGG 0.488845 2.2:+15541046 MS.gene059859:CDS
TGGACAAAACAGTGCGGCTG+TGG 0.490355 2.2:+15543315 MS.gene059859:CDS
TCAGTATGGATTTCACAAAT+GGG 0.493127 2.2:+15545094 MS.gene059859:CDS
ATTGTTACTGCTGGTCTTCG+AGG 0.493885 2.2:+15545150 MS.gene059859:CDS
CAATCAACAACTTGTCGATC+CGG 0.494327 2.2:-15543901 None:intergenic
ACGAGTACGACGTTCTGAAA+CGG 0.496617 2.2:-15540456 None:intergenic
TCTGTGCAGGGTGCACTAGT+TGG 0.499249 2.2:+15544050 MS.gene059859:intron
TACAGGTGTAGGAGGATGAT+TGG 0.499821 2.2:-15544908 None:intergenic
TGGAATAAAGTGAAGGAGGT+TGG 0.500727 2.2:+15540875 MS.gene059859:CDS
GATGTAGCCGGTGGTGGTGT+TGG 0.500879 2.2:+15540998 MS.gene059859:CDS
TTCTTGGTCAGAGTTGGAGT+TGG 0.500980 2.2:-15540345 None:intergenic
CGGAATATGGCATTGTAAGG+TGG 0.504983 2.2:-15540536 None:intergenic
TAGAATTTCTGCAACATGGC+CGG 0.505340 2.2:+15545029 MS.gene059859:CDS
GTCTTCTTGAGAAATGAGAA+TGG 0.506187 2.2:-15540222 None:intergenic
TCTTCTGGAGAGGAAGAGAA+AGG 0.514361 2.2:+15541519 MS.gene059859:CDS
GTTGGAGTTGGAACAAGAGC+AGG 0.515164 2.2:-15540333 None:intergenic
GAGGAGGTCGAGCTCGGCTA+CGG 0.516325 2.2:+15541171 MS.gene059859:CDS
TCTTCTTGAGAAATGAGAAT+GGG 0.517246 2.2:-15540221 None:intergenic
CGTCGGAGAAAGGCGGGAGG+AGG 0.519256 2.2:+15541155 MS.gene059859:CDS
GGTATGGTGATTGTTACTGC+TGG 0.519931 2.2:+15545141 MS.gene059859:CDS
CCCATTTCCAACACCACCAC+CGG 0.520955 2.2:-15541005 None:intergenic
ATCTGCTGATTCTCGAATAC+GGG 0.522317 2.2:+15544423 MS.gene059859:CDS
TGCACTAGTTGGTTCATACA+AGG 0.522538 2.2:+15544061 MS.gene059859:CDS
TGGTCAATCTCCGATTGTGC+AGG 0.524667 2.2:+15540940 MS.gene059859:CDS
TGACCTTTAAAGGAGCAAAC+GGG 0.525285 2.2:-15541622 None:intergenic
GTTGGAACAAGAGCAGGAAG+AGG 0.525322 2.2:-15540327 None:intergenic
GGATTGGGTTACCACGTGAA+AGG 0.527047 2.2:-15540514 None:intergenic
CAAGAGTGTTGCTAGTTCAA+TGG 0.527850 2.2:+15541090 MS.gene059859:CDS
ATACTTCGTCGGAGAAAGGC+GGG 0.528933 2.2:+15541149 MS.gene059859:CDS
GGGAAATATCTTGCTAGTGC+TGG 0.528990 2.2:+15541343 MS.gene059859:CDS
CTAAGGGGAAGAAGAAAGGA+GGG 0.531994 2.2:+15541050 MS.gene059859:CDS
ACCACCACCGGCTACATCAC+CGG 0.532113 2.2:-15540993 None:intergenic
TCCCATGCATCACCCATACC+AGG 0.535005 2.2:-15544820 None:intergenic
TGCAGGCCCAACAGAAGTAA+AGG 0.537014 2.2:+15544733 MS.gene059859:CDS
AGGCGGGAGGAGGTCGAGCT+CGG 0.539651 2.2:+15541165 MS.gene059859:CDS
GTACTTCTGATGAACTTCCT+GGG 0.541085 2.2:-15544393 None:intergenic
GGAATATGGCATTGTAAGGT+GGG 0.542196 2.2:-15540535 None:intergenic
TCCCCGGCTAAACCTCCGTC+CGG 0.543498 2.2:+15540668 MS.gene059859:CDS
CGGTCTCCTCATGATTCTGC+CGG 0.544667 2.2:-15540973 None:intergenic
TCGATAGAATTTCTGCAACA+TGG 0.545086 2.2:+15545025 MS.gene059859:CDS
CGACGTTCTGAAACGGAAGA+AGG 0.546555 2.2:-15540449 None:intergenic
TGTGGAGTCTGAGAGGAAAG+GGG 0.547241 2.2:+15541396 MS.gene059859:CDS
CTCGCAATGGTTGCATGGTG+TGG 0.549432 2.2:-15544982 None:intergenic
AAGTTAGAGAAGATGGAATG+TGG 0.550294 2.2:+15540855 MS.gene059859:CDS
GATTGGGTTACCACGTGAAA+GGG 0.551300 2.2:-15540513 None:intergenic
TCTAAGGGGAAGAAGAAAGG+AGG 0.552386 2.2:+15541049 MS.gene059859:CDS
GGAAATGGGAGTAATGGTAA+TGG 0.552792 2.2:+15541019 MS.gene059859:CDS
TATGACCGTCAGATTTGGAT+CGG 0.552937 2.2:-15540556 None:intergenic
GAGGAATTTGAGATGACGGT+TGG 0.552951 2.2:+15540920 MS.gene059859:CDS
TCTTCTACTTTGCCGGACAC+GGG 0.553423 2.2:+15540743 MS.gene059859:CDS
ACTGTTTGTCGCACTCGCAA+TGG 0.554025 2.2:-15544995 None:intergenic
AAGTGAAGGAGGTTGGTACT+GGG 0.559730 2.2:+15540882 MS.gene059859:CDS
GAGGAGACCGGTGATGTAGC+CGG 0.560566 2.2:+15540986 MS.gene059859:CDS
ATTTCTTGTTAATGGGTCGC+CGG 0.562164 2.2:+15541465 MS.gene059859:CDS
TTGGATCGATCTTCATGAGA+TGG 0.562964 2.2:+15543921 MS.gene059859:CDS
ACCCATACCAGGCCAGGGAA+TGG 0.565424 2.2:-15544809 None:intergenic
ATGTGTCAGTAGCCATTCCC+TGG 0.566854 2.2:+15544797 MS.gene059859:CDS
TCGCACTCGCAATGGTTGCA+TGG 0.572307 2.2:-15544987 None:intergenic
GGTGTTGGAAATGGGAGTAA+TGG 0.576549 2.2:+15541013 MS.gene059859:CDS
TTCATTTCATGGACCTGAGA+GGG 0.576622 2.2:+15541210 MS.gene059859:CDS
GATACTTCGTCGGAGAAAGG+CGG 0.578609 2.2:+15541148 MS.gene059859:CDS
TTTACCATTTGCTGTGAGGG+AGG 0.584191 2.2:-15544653 None:intergenic
AGAGGAAAACTTCGGTGTCG+AGG 0.584446 2.2:+15544930 MS.gene059859:CDS
AGTGTTGCTAGTTCAATGGC+GGG 0.585999 2.2:+15541094 MS.gene059859:CDS
TTCTGGAGAGGAAGAGAAAG+GGG 0.586118 2.2:+15541521 MS.gene059859:CDS
GGGGATCCGCCAGAATTACC+GGG 0.588995 2.2:-15540650 None:intergenic
CGGCAGAATCATGAGGAGAC+CGG 0.589002 2.2:+15540974 MS.gene059859:CDS
GCCAAAGGAGACAACGTCAC+GGG 0.589907 2.2:-15541490 None:intergenic
ATATATTGTTGCTGCAAGTG+AGG 0.589984 2.2:+15544675 MS.gene059859:CDS
GAGGAAAACTTCGGTGTCGA+GGG 0.590606 2.2:+15544931 MS.gene059859:CDS
TCATCCTCCTACACCTGTAG+AGG 0.591962 2.2:+15544912 MS.gene059859:CDS
CTAGAAGAATTCTTTCCGGA+CGG 0.592446 2.2:-15540683 None:intergenic
GAAGAATTCTTTCCGGACGG+AGG 0.594884 2.2:-15540680 None:intergenic
ATATCTTGCTAGTGCTGGTG+AGG 0.595765 2.2:+15541348 MS.gene059859:CDS
GCTACGGATGATAGTCAAGA+TGG 0.595940 2.2:+15541187 MS.gene059859:CDS
AATGGGAGTAATGGTAATGG+AGG 0.600063 2.2:+15541022 MS.gene059859:CDS
GGCAAAGTAGAAGAATTCCC+CGG 0.602827 2.2:-15540734 None:intergenic
AGTAACAATCACCATACCCC+AGG 0.610628 2.2:-15545136 None:intergenic
ATGGTCTCTTATATTCGAAG+TGG 0.610791 2.2:-15545204 None:intergenic
TCCAGAAGATTATCCGCCAA+AGG 0.612551 2.2:-15541505 None:intergenic
GTTGTGGAGTCTGAGAGGAA+AGG 0.615157 2.2:+15541394 MS.gene059859:CDS
TATATTTACCATTTGCTGTG+AGG 0.618354 2.2:-15544657 None:intergenic
TATGGAGGAATTTGAGATGA+CGG 0.619376 2.2:+15540916 MS.gene059859:CDS
GCATCACCCATACCAGGCCA+GGG 0.621344 2.2:-15544814 None:intergenic
GCTGCTTGTTATACACCTGA+TGG 0.625541 2.2:+15543949 MS.gene059859:CDS
GGCAGGTTGTGGAGTCTGAG+AGG 0.626338 2.2:+15541389 MS.gene059859:CDS
TACTTCTGATGAACTTCCTG+GGG 0.627143 2.2:-15544392 None:intergenic
TGGCGGATAATCTTCTGGAG+AGG 0.629487 2.2:+15541509 MS.gene059859:CDS
CCTGAGACTTAGACCAAGAG+AGG 0.630082 2.2:-15541663 None:intergenic
CCGGTGTTGATTTCTTGCCG+GGG 0.630342 2.2:+15540717 MS.gene059859:CDS
TTGTGCAGGAGCTTATGCGC+CGG 0.632452 2.2:+15540954 MS.gene059859:CDS
GAGTGTTGCTAGTTCAATGG+CGG 0.637336 2.2:+15541093 MS.gene059859:CDS
TGGAATGTGGAATAAAGTGA+AGG 0.638048 2.2:+15540868 MS.gene059859:CDS
CAATGGCGGGTCATAAGGAG+AGG 0.638802 2.2:+15541107 MS.gene059859:CDS
TGGAGAGGAAGAGAAAGGGG+AGG 0.640683 2.2:+15541524 MS.gene059859:CDS
CCCCGGCAAGAAATCAACAC+CGG 0.643592 2.2:-15540717 None:intergenic
TGGCGGGTCATAAGGAGAGG+AGG 0.643676 2.2:+15541110 MS.gene059859:CDS
GTTCATTTCATGGACCTGAG+AGG 0.648398 2.2:+15541209 MS.gene059859:CDS
GTAATGGAGGTTGTTCTAAG+GGG 0.650046 2.2:+15541035 MS.gene059859:CDS
TGATGAGAGAGATACTTCGT+CGG 0.650321 2.2:+15541138 MS.gene059859:CDS
ATATTCCGATCCAAATCTGA+CGG 0.651541 2.2:+15540551 MS.gene059859:CDS
ACTCAACGACTTCCTACTAA+CGG 0.653986 2.2:-15541551 None:intergenic
CAGTATGGATTTCACAAATG+GGG 0.657850 2.2:+15545095 MS.gene059859:CDS
CGCCAAAGGAGACAACGTCA+CGG 0.658328 2.2:-15541491 None:intergenic
ACTGTTCCCGGTAATTCTGG+CGG 0.661998 2.2:+15540644 MS.gene059859:CDS
TATGCGCCGGCAGAATCATG+AGG 0.668765 2.2:+15540967 MS.gene059859:CDS
GTTGCTTATGGAGAAACAGG+AGG 0.670617 2.2:+15541423 MS.gene059859:CDS
TGGGAGACAGTTGACTATGG+AGG 0.676143 2.2:+15540901 MS.gene059859:CDS
ACACCTGTAGAGGAAAACTT+CGG 0.682782 2.2:+15544922 MS.gene059859:CDS
GCACTAGTTGGTTCATACAA+GGG 0.684365 2.2:+15544062 MS.gene059859:CDS
TCCGGACGGAGGTTTAGCCG+GGG 0.685261 2.2:-15540669 None:intergenic
AATGTGGAATAAAGTGAAGG+AGG 0.688067 2.2:+15540871 MS.gene059859:CDS
GTGAAATCCATACTGACACG+AGG 0.695168 2.2:-15545087 None:intergenic
ATGTTCATAGGACTGTGTCA+CGG 0.698331 2.2:-15544761 None:intergenic
TGAAATCCATACTGACACGA+GGG 0.711651 2.2:-15545086 None:intergenic
CTTCGTCGGAGAAAGGCGGG+AGG 0.733071 2.2:+15541152 MS.gene059859:CDS
GAGACCGGTGATGTAGCCGG+TGG 0.736645 2.2:+15540989 MS.gene059859:CDS
CTTCAATGGACAAAACAGTG+CGG 0.776088 2.2:+15543309 MS.gene059859:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATCTAATTCAATTTTTAAT+AGG - chr2.2:15543549-15543568 None:intergenic 10.0%
!!! ATCTAATTCAATTTTTAATA+GGG - chr2.2:15543548-15543567 None:intergenic 10.0%
!! AATACAATTTATCATACAAA+TGG - chr2.2:15544548-15544567 None:intergenic 15.0%
!! GTTTAACAACAAAAATAATT+TGG - chr2.2:15542732-15542751 None:intergenic 15.0%
!! TAATTAGCAAAGAAAAAAAA+CGG - chr2.2:15543759-15543778 None:intergenic 15.0%
!!! AATATGTTATTTCTTGTTAA+TGG + chr2.2:15541457-15541476 MS.gene059859:CDS 15.0%
!!! ATATGTTATTTCTTGTTAAT+GGG + chr2.2:15541458-15541477 MS.gene059859:CDS 15.0%
!!! CATTTAAAATGAACAATTTA+GGG + chr2.2:15542321-15542340 MS.gene059859:intron 15.0%
!!! TAAATACAATTTTAGTTTTG+TGG - chr2.2:15542659-15542678 None:intergenic 15.0%
!!! TCAGTATTGATTTTATAATT+GGG + chr2.2:15541895-15541914 MS.gene059859:intron 15.0%
!!! TTATAAACTTCGTTTTTAAT+GGG + chr2.2:15542234-15542253 MS.gene059859:intron 15.0%
!!! TTTATAAACTTCGTTTTTAA+TGG + chr2.2:15542233-15542252 MS.gene059859:intron 15.0%
!! AAATTAACTTCTGATTAAGT+AGG + chr2.2:15542615-15542634 MS.gene059859:intron 20.0%
!! AGACAAAAGTTATTTGTAAT+TGG + chr2.2:15542775-15542794 MS.gene059859:intron 20.0%
!! ATTTACTATTCACTCTTATA+TGG + chr2.2:15541766-15541785 MS.gene059859:intron 20.0%
!! CATATTTAACATAAAAGGTT+TGG + chr2.2:15542824-15542843 MS.gene059859:intron 20.0%
!! GAAACCATATTTAACATAAA+AGG + chr2.2:15542819-15542838 MS.gene059859:intron 20.0%
!! GTACATTTAACTGTTAAAAT+TGG + chr2.2:15541985-15542004 MS.gene059859:intron 20.0%
!!! AAAAACACATAAAAAGTACA+CGG - chr2.2:15543503-15543522 None:intergenic 20.0%
!!! AAAATGGTTTATTTTTCCAA+CGG + chr2.2:15542260-15542279 MS.gene059859:intron 20.0%
!!! AATTTTAGTTTTGTGGTAAA+AGG - chr2.2:15542652-15542671 None:intergenic 20.0%
!!! AGTATTAAGTTTAGTTTAGA+TGG + chr2.2:15541322-15541341 MS.gene059859:CDS 20.0%
!!! ATTAGAACTTTCCAAAATTT+TGG + chr2.2:15545177-15545196 MS.gene059859:CDS 20.0%
!!! CAAACCTTTTATGTTAAATA+TGG - chr2.2:15542826-15542845 None:intergenic 20.0%
!!! CTCAGTATTGATTTTATAAT+TGG + chr2.2:15541894-15541913 MS.gene059859:intron 20.0%
!!! GAATTTTGAATAGATTCTTT+GGG + chr2.2:15543094-15543113 MS.gene059859:intron 20.0%
!!! GCATTTAAAATGAACAATTT+AGG + chr2.2:15542320-15542339 MS.gene059859:intron 20.0%
!!! GTATTAAGTTTAGTTTAGAT+GGG + chr2.2:15541323-15541342 MS.gene059859:CDS 20.0%
!!! TGAATTTTGAATAGATTCTT+TGG + chr2.2:15543093-15543112 MS.gene059859:intron 20.0%
!!! TGTCATTTATATAATACATC+TGG + chr2.2:15544089-15544108 MS.gene059859:CDS 20.0%
! AAATGTACTCTTATACAACT+TGG - chr2.2:15542013-15542032 None:intergenic 25.0%
! AACTATATCTTGAATCAGAT+TGG - chr2.2:15543593-15543612 None:intergenic 25.0%
! AATCAGTTCAAAACTTTCAA+AGG - chr2.2:15542873-15542892 None:intergenic 25.0%
! AATCATAAGCATCATAACTT+TGG - chr2.2:15544341-15544360 None:intergenic 25.0%
! AATGCGATGAAATTGAAAAA+GGG + chr2.2:15540774-15540793 MS.gene059859:CDS 25.0%
! ATATGTTGATGTCTTTACAA+TGG + chr2.2:15542569-15542588 MS.gene059859:intron 25.0%
! CAATAAGGTATGAATCAAAT+AGG - chr2.2:15542969-15542988 None:intergenic 25.0%
! CAGGTAATTTAATGATTTAC+TGG + chr2.2:15544303-15544322 MS.gene059859:intron 25.0%
! CAGTAAATCATTAAATTACC+TGG - chr2.2:15544305-15544324 None:intergenic 25.0%
! GAGTTCTTTAATATCCTATA+GGG + chr2.2:15543688-15543707 MS.gene059859:intron 25.0%
! TCAAATCACAAGAAAATTAC+TGG + chr2.2:15544276-15544295 MS.gene059859:CDS 25.0%
! TGATTCATACCTTATTGTTA+TGG + chr2.2:15542972-15542991 MS.gene059859:intron 25.0%
! TTAAAATGAACAATTTAGGG+AGG + chr2.2:15542324-15542343 MS.gene059859:intron 25.0%
! TTAGTTATTAGAGTACATAC+AGG + chr2.2:15542061-15542080 MS.gene059859:intron 25.0%
! TTTACAGTGAAAATGTTCAT+AGG - chr2.2:15544776-15544795 None:intergenic 25.0%
!! AAAACACATAAAAAGTACAC+GGG - chr2.2:15543502-15543521 None:intergenic 25.0%
!! ATTTTTCCAGATGTATACAT+GGG - chr2.2:15544704-15544723 None:intergenic 25.0%
!! GTTTGATATTTTCTTTGACA+AGG + chr2.2:15542393-15542412 MS.gene059859:intron 25.0%
!! TTCAATTTTTAATAGGGAAG+AGG - chr2.2:15543542-15543561 None:intergenic 25.0%
!!! CAAATTTTAATAACTACCAG+AGG - chr2.2:15543024-15543043 None:intergenic 25.0%
!!! GTATTGATTTTATAATTGGG+TGG + chr2.2:15541898-15541917 MS.gene059859:intron 25.0%
!!! TATTGTTGTTGTTGTTTTCT+TGG - chr2.2:15540379-15540398 None:intergenic 25.0%
AAAAACAAGATGTTAACCAG+TGG - chr2.2:15544190-15544209 None:intergenic 30.0%
AAATTTGAGTCTGATTGAGT+AGG - chr2.2:15542210-15542229 None:intergenic 30.0%
AAGATGTCTGTTGAATAAAG+CGG + chr2.2:15542483-15542502 MS.gene059859:intron 30.0%
AAGCAGATAGAAACGAAAAA+AGG - chr2.2:15543784-15543803 None:intergenic 30.0%
AATAAAGCGGTAACTTACTT+AGG + chr2.2:15542496-15542515 MS.gene059859:intron 30.0%
AATGTAAATAGTACTGTTCC+CGG + chr2.2:15540632-15540651 MS.gene059859:CDS 30.0%
ACCATAAGAGATCTTGATAA+TGG + chr2.2:15540812-15540831 MS.gene059859:CDS 30.0%
AGAGGATGTTTATGTAAACT+AGG + chr2.2:15542932-15542951 MS.gene059859:intron 30.0%
AGGATGGTTATTTGTAACTT+GGG + chr2.2:15542516-15542535 MS.gene059859:intron 30.0%
AGTAGAAGAAGAGATAAAAC+AGG - chr2.2:15540609-15540628 None:intergenic 30.0%
ATACTCTATTCTGACAATTG+TGG + chr2.2:15544164-15544183 MS.gene059859:intron 30.0%
ATCATGCAAATGACCTTTAA+AGG - chr2.2:15541635-15541654 None:intergenic 30.0%
ATCTTGAATCAGATTGGATA+GGG - chr2.2:15543587-15543606 None:intergenic 30.0%
ATGCGATGAAATTGAAAAAG+GGG + chr2.2:15540775-15540794 MS.gene059859:CDS 30.0%
ATGTACACTTATATGCAACT+TGG - chr2.2:15541971-15541990 None:intergenic 30.0%
ATTCGTAGAAGAAATCTTGT+TGG - chr2.2:15540283-15540302 None:intergenic 30.0%
CTATAGGGTGGTTAAAATTT+AGG + chr2.2:15543703-15543722 MS.gene059859:intron 30.0%
GAATGCGATGAAATTGAAAA+AGG + chr2.2:15540773-15540792 MS.gene059859:CDS 30.0%
GATGATAGATACTTCATTAG+TGG + chr2.2:15543844-15543863 MS.gene059859:CDS 30.0%
GGAGTTCTTTAATATCCTAT+AGG + chr2.2:15543687-15543706 MS.gene059859:intron 30.0%
TAGCAAAGAAAAAAAACGGA+GGG - chr2.2:15543755-15543774 None:intergenic 30.0%
TAGGATGGTTATTTGTAACT+TGG + chr2.2:15542515-15542534 MS.gene059859:intron 30.0%
TATATACATGCACATTAGAG+TGG - chr2.2:15543469-15543488 None:intergenic 30.0%
TATCATCAACAGGATTAAAC+TGG - chr2.2:15543831-15543850 None:intergenic 30.0%
TATCTTGAATCAGATTGGAT+AGG - chr2.2:15543588-15543607 None:intergenic 30.0%
TATTTGTCTTCACTGCATAT+AGG + chr2.2:15543652-15543671 MS.gene059859:intron 30.0%
TCAGTATGGATTTCACAAAT+GGG + chr2.2:15545094-15545113 MS.gene059859:CDS 30.0%
TCCATTATCAAGATCTCTTA+TGG - chr2.2:15540816-15540835 None:intergenic 30.0%
TCTTCTTGAGAAATGAGAAT+GGG - chr2.2:15540224-15540243 None:intergenic 30.0%
TGCGAAGTATAAACATTACA+AGG - chr2.2:15543266-15543285 None:intergenic 30.0%
TTAGCAAAGAAAAAAAACGG+AGG - chr2.2:15543756-15543775 None:intergenic 30.0%
TTAGTTAAATTGTCTGTGCA+GGG + chr2.2:15544038-15544057 MS.gene059859:intron 30.0%
TTCTTTAATATCCTATAGGG+TGG + chr2.2:15543691-15543710 MS.gene059859:intron 30.0%
! ATACTTCATTAGTGGATCTT+TGG + chr2.2:15543852-15543871 MS.gene059859:CDS 30.0%
! ATGAAGTATCTATCATCAAC+AGG - chr2.2:15543841-15543860 None:intergenic 30.0%
! CATTTTTCCAGATGTATACA+TGG - chr2.2:15544705-15544724 None:intergenic 30.0%
! GATCTGGTTCATAAGTTTAA+AGG + chr2.2:15544460-15544479 MS.gene059859:CDS 30.0%
! TCTTCTAGAAGAATTCTTTC+CGG - chr2.2:15540690-15540709 None:intergenic 30.0%
! TTTTCTTTGACAAGGAAACA+TGG + chr2.2:15542401-15542420 MS.gene059859:intron 30.0%
!! AAGCTCATAATGGATCAATT+TGG + chr2.2:15541299-15541318 MS.gene059859:CDS 30.0%
!! ATATTTACCATTTGCTGTGA+GGG - chr2.2:15544659-15544678 None:intergenic 30.0%
!! CGTTTTTAATGGGTCTAAAA+TGG + chr2.2:15542244-15542263 MS.gene059859:intron 30.0%
!! CTAAATTTTAACCACCCTAT+AGG - chr2.2:15543705-15543724 None:intergenic 30.0%
!! TATATTTACCATTTGCTGTG+AGG - chr2.2:15544660-15544679 None:intergenic 30.0%
!! TGAATTTCTGAAGTCTGAAA+TGG - chr2.2:15544002-15544021 None:intergenic 30.0%
!! TTGGATAGGTCTTTTTGTTT+TGG + chr2.2:15541700-15541719 MS.gene059859:intron 30.0%
!!! ATTTTTTCACACAGTGACTA+TGG + chr2.2:15543365-15543384 MS.gene059859:CDS 30.0%
!!! TTAGCTTCTGTTTTTTGGAT+AGG + chr2.2:15541686-15541705 MS.gene059859:intron 30.0%
!!! TTAGTTTTGTGGTAAAAGGA+TGG - chr2.2:15542648-15542667 None:intergenic 30.0%
AACTGATGTAAGTTTCTTGC+AGG + chr2.2:15544601-15544620 MS.gene059859:intron 35.0%
AAGCCAATTCATCAGTTCAT+CGG - chr2.2:15541829-15541848 None:intergenic 35.0%
AAGTCAAAAAATGTCAGCCT+GGG + chr2.2:15545119-15545138 MS.gene059859:CDS 35.0%
AAGTTAGAGAAGATGGAATG+TGG + chr2.2:15540855-15540874 MS.gene059859:CDS 35.0%
AATGTGGAATAAAGTGAAGG+AGG + chr2.2:15540871-15540890 MS.gene059859:CDS 35.0%
ACTCGTCTTCTTCAAACTAT+TGG + chr2.2:15540473-15540492 MS.gene059859:CDS 35.0%
AGGATTGTGTGATTCATGTT+TGG + chr2.2:15541368-15541387 MS.gene059859:CDS 35.0%
AGGTTTGGATCCTATTAAAG+AGG + chr2.2:15542839-15542858 MS.gene059859:intron 35.0%
AGTCAAGATGGTTCATTTCA+TGG + chr2.2:15541199-15541218 MS.gene059859:CDS 35.0%
AGTCTTAAAAACCTGTACTG+TGG + chr2.2:15542128-15542147 MS.gene059859:intron 35.0%
ATATATTGTTGCTGCAAGTG+AGG + chr2.2:15544675-15544694 MS.gene059859:CDS 35.0%
ATATTCCGATCCAAATCTGA+CGG + chr2.2:15540551-15540570 MS.gene059859:CDS 35.0%
CAAGAGATTCAAGCTCATAA+TGG + chr2.2:15541289-15541308 MS.gene059859:CDS 35.0%
CAGTATGGATTTCACAAATG+GGG + chr2.2:15545095-15545114 MS.gene059859:CDS 35.0%
CCATATGTCGTAACTGTTAA+GGG - chr2.2:15540420-15540439 None:intergenic 35.0%
CCTCTCCAATGTAAACTAAA+GGG - chr2.2:15542917-15542936 None:intergenic 35.0%
CCTTATTGTTATGGTAACAC+CGG + chr2.2:15542981-15543000 MS.gene059859:intron 35.0%
CTCTCCAATGTAAACTAAAG+GGG - chr2.2:15542916-15542935 None:intergenic 35.0%
CTTAGTTAAATTGTCTGTGC+AGG + chr2.2:15544037-15544056 MS.gene059859:intron 35.0%
GCATATAGGACAAGTTATAC+AGG + chr2.2:15543666-15543685 MS.gene059859:intron 35.0%
GGATGGTTATTTGTAACTTG+GGG + chr2.2:15542517-15542536 MS.gene059859:intron 35.0%
GGTTTGGATCCTATTAAAGA+GGG + chr2.2:15542840-15542859 MS.gene059859:intron 35.0%
GTCAGTATGGATTTCACAAA+TGG + chr2.2:15545093-15545112 MS.gene059859:CDS 35.0%
GTCTTAAAAACCTGTACTGT+GGG + chr2.2:15542129-15542148 MS.gene059859:intron 35.0%
GTCTTCTTGAGAAATGAGAA+TGG - chr2.2:15540225-15540244 None:intergenic 35.0%
GTGAAAGAAGTTAGAGAAGA+TGG + chr2.2:15540848-15540867 MS.gene059859:CDS 35.0%
GTTTGGATCCTATTAAAGAG+GGG + chr2.2:15542841-15542860 MS.gene059859:intron 35.0%
TAAGTCAAAAAATGTCAGCC+TGG + chr2.2:15545118-15545137 MS.gene059859:CDS 35.0%
TACAAGGATGATCTAAACAC+TGG - chr2.2:15543250-15543269 None:intergenic 35.0%
TCCATATGTCGTAACTGTTA+AGG - chr2.2:15540421-15540440 None:intergenic 35.0%
TCCTCTCCAATGTAAACTAA+AGG - chr2.2:15542918-15542937 None:intergenic 35.0%
TCGATAGAATTTCTGCAACA+TGG + chr2.2:15545025-15545044 MS.gene059859:CDS 35.0%
TCGTAACATTGAATGTGAAG+TGG - chr2.2:15542754-15542773 None:intergenic 35.0%
TCTCCAATGTAAACTAAAGG+GGG - chr2.2:15542915-15542934 None:intergenic 35.0%
TGGAATGTGGAATAAAGTGA+AGG + chr2.2:15540868-15540887 MS.gene059859:CDS 35.0%
TGTCACAGTGAAAAGATATC+TGG + chr2.2:15542168-15542187 MS.gene059859:intron 35.0%
TTGAATAGATTCTTTGGGCA+GGG + chr2.2:15543099-15543118 MS.gene059859:intron 35.0%
TTTGAATAGATTCTTTGGGC+AGG + chr2.2:15543098-15543117 MS.gene059859:intron 35.0%
! AATCTTGTTGGTCTAGTTGT+TGG - chr2.2:15540271-15540290 None:intergenic 35.0%
! ATGACCTTTAAAGGAGCAAA+CGG - chr2.2:15541626-15541645 None:intergenic 35.0%
! GAAGTGGCAATCCAAAATTT+TGG - chr2.2:15545191-15545210 None:intergenic 35.0%
! GACATGCATGATACATTTTC+TGG + chr2.2:15544841-15544860 MS.gene059859:CDS 35.0%
! GCTAGAAGAAGTTTTTCTTC+CGG - chr2.2:15545051-15545070 None:intergenic 35.0%
! TATGGAGGAATTTGAGATGA+CGG + chr2.2:15540916-15540935 MS.gene059859:CDS 35.0%
! TCAAACACATTTGTTGAGCT+GGG - chr2.2:15542686-15542705 None:intergenic 35.0%
! TCTTCTAGAAGAAGTCATTC+CGG + chr2.2:15540698-15540717 MS.gene059859:CDS 35.0%
! TTCAAACACATTTGTTGAGC+TGG - chr2.2:15542687-15542706 None:intergenic 35.0%
!! AGTTTTAGTGACTCTCCTTT+CGG + chr2.2:15542093-15542112 MS.gene059859:intron 35.0%
!! CAAGAAAATTACTGGTTTCC+AGG + chr2.2:15544284-15544303 MS.gene059859:CDS 35.0%
!! TTTTATTTACAGTTTGCCCC+AGG + chr2.2:15544376-15544395 MS.gene059859:intron 35.0%
!!! CATCGTTGGCTTTTGTTAAA+AGG + chr2.2:15541789-15541808 MS.gene059859:intron 35.0%
!!! GGTTTTTTCCCCTCTTTAAT+AGG - chr2.2:15542852-15542871 None:intergenic 35.0%
!!! TCAGGTTAGCTTCTGTTTTT+TGG + chr2.2:15541681-15541700 MS.gene059859:intron 35.0%
AAAAAAAACGGAGGGAACGA+GGG - chr2.2:15543747-15543766 None:intergenic 40.0%
AAACCCGTTTGCTCCTTTAA+AGG + chr2.2:15541619-15541638 MS.gene059859:CDS 40.0%
AAATGCCGTCTTTCCAAGAA+AGG - chr2.2:15542306-15542325 None:intergenic 40.0%
AAGAGGAGAGAGAGAGTAAA+CGG - chr2.2:15540313-15540332 None:intergenic 40.0%
AAGCGGTAACTTACTTAGGA+TGG + chr2.2:15542500-15542519 MS.gene059859:intron 40.0%
AATACATCTGGTACTGTCAG+AGG + chr2.2:15544101-15544120 MS.gene059859:intron 40.0%
AATTGTGCCTTGCGCATAAT+TGG - chr2.2:15543623-15543642 None:intergenic 40.0%
ACACCTGTAGAGGAAAACTT+CGG + chr2.2:15544922-15544941 MS.gene059859:CDS 40.0%
ACTCAACGACTTCCTACTAA+CGG - chr2.2:15541554-15541573 None:intergenic 40.0%
ACTGCAATAATGCAACCGAA+AGG - chr2.2:15542111-15542130 None:intergenic 40.0%
AGGATTCCCATGTATACATC+TGG + chr2.2:15544695-15544714 MS.gene059859:CDS 40.0%
AGTACTTCTGATGAACTTCC+TGG - chr2.2:15544397-15544416 None:intergenic 40.0%
AGTCAAAAAATGTCAGCCTG+GGG + chr2.2:15545120-15545139 MS.gene059859:CDS 40.0%
AGTGAGTGCAAACACATGTT+CGG - chr2.2:15541596-15541615 None:intergenic 40.0%
ATGACTGCAACTCAGGTTTA+GGG - chr2.2:15543441-15543460 None:intergenic 40.0%
ATGTTCATAGGACTGTGTCA+CGG - chr2.2:15544764-15544783 None:intergenic 40.0%
ATTGTTATGGTAACACCGGT+GGG + chr2.2:15542985-15543004 MS.gene059859:intron 40.0%
CAATCAACAACTTGTCGATC+CGG - chr2.2:15543904-15543923 None:intergenic 40.0%
CCCTTAACAGTTACGACATA+TGG + chr2.2:15540417-15540436 MS.gene059859:CDS 40.0%
CTAGAAGAATTCTTTCCGGA+CGG - chr2.2:15540686-15540705 None:intergenic 40.0%
CTTCAATGGACAAAACAGTG+CGG + chr2.2:15543309-15543328 MS.gene059859:CDS 40.0%
GAATCAGATTGGATAGGGAT+AGG - chr2.2:15543582-15543601 None:intergenic 40.0%
GATCGGAATATGGCATTGTA+AGG - chr2.2:15540542-15540561 None:intergenic 40.0%
GGAAATGGGAGTAATGGTAA+TGG + chr2.2:15541019-15541038 MS.gene059859:CDS 40.0%
GGAATATGGCATTGTAAGGT+GGG - chr2.2:15540538-15540557 None:intergenic 40.0%
GGTTATTTGTAACTTGGGGT+GGG + chr2.2:15542521-15542540 MS.gene059859:intron 40.0%
GTAAACTAAAGGGGGAAGTT+TGG - chr2.2:15542907-15542926 None:intergenic 40.0%
GTACTTCTGATGAACTTCCT+GGG - chr2.2:15544396-15544415 None:intergenic 40.0%
GTCAGATTTGGATCGGAATA+TGG - chr2.2:15540552-15540571 None:intergenic 40.0%
GTGACACCTTTACTTCTGTT+GGG - chr2.2:15544742-15544761 None:intergenic 40.0%
GTTATTTGTAACTTGGGGTG+GGG + chr2.2:15542522-15542541 MS.gene059859:intron 40.0%
GTTGTTATGACCGTCAGATT+TGG - chr2.2:15540564-15540583 None:intergenic 40.0%
GTTTCTATCTGCTTTCTGTC+TGG + chr2.2:15543790-15543809 MS.gene059859:intron 40.0%
TACTTCTGATGAACTTCCTG+GGG - chr2.2:15544395-15544414 None:intergenic 40.0%
TAGAATTTCTGCAACATGGC+CGG + chr2.2:15545029-15545048 MS.gene059859:CDS 40.0%
TAGTAGGAAGTCGTTGAGTT+TGG + chr2.2:15541555-15541574 MS.gene059859:CDS 40.0%
TATGACCGTCAGATTTGGAT+CGG - chr2.2:15540559-15540578 None:intergenic 40.0%
TATTGTTATGGTAACACCGG+TGG + chr2.2:15542984-15543003 MS.gene059859:intron 40.0%
TCACTCTTATATGGCATCGT+TGG + chr2.2:15541775-15541794 MS.gene059859:intron 40.0%
TCAGTTTGATCAGCACGAAT+TGG - chr2.2:15544587-15544606 None:intergenic 40.0%
TGAAATCCATACTGACACGA+GGG - chr2.2:15545089-15545108 None:intergenic 40.0%
TGAATAGATTCTTTGGGCAG+GGG + chr2.2:15543100-15543119 MS.gene059859:intron 40.0%
TGACCGATGAACTGATGAAT+TGG + chr2.2:15541823-15541842 MS.gene059859:intron 40.0%
TGATGAGAGAGATACTTCGT+CGG + chr2.2:15541138-15541157 MS.gene059859:CDS 40.0%
TGCTTTAGTGAACTGTGATG+TGG + chr2.2:15542453-15542472 MS.gene059859:intron 40.0%
TGGAATAAAGTGAAGGAGGT+TGG + chr2.2:15540875-15540894 MS.gene059859:CDS 40.0%
TGGTTATTTGTAACTTGGGG+TGG + chr2.2:15542520-15542539 MS.gene059859:intron 40.0%
TTCATTTCATGGACCTGAGA+GGG + chr2.2:15541210-15541229 MS.gene059859:CDS 40.0%
TTGGATCGATCTTCATGAGA+TGG + chr2.2:15543921-15543940 MS.gene059859:CDS 40.0%
TTGTGATTCTAGGCCTTTCT+TGG + chr2.2:15542290-15542309 MS.gene059859:intron 40.0%
TTGTGTGATTCATGTTTGGC+AGG + chr2.2:15541372-15541391 MS.gene059859:CDS 40.0%
TTGTTATACACCTGATGGTC+AGG + chr2.2:15543954-15543973 MS.gene059859:CDS 40.0%
! AAGTTTTCCTCTACAGGTGT+AGG - chr2.2:15544922-15544941 None:intergenic 40.0%
! ATTTCTTGTTAATGGGTCGC+CGG + chr2.2:15541465-15541484 MS.gene059859:CDS 40.0%
! CAAACACATTTGTTGAGCTG+GGG - chr2.2:15542685-15542704 None:intergenic 40.0%
! CCCTTTAGTTTACATTGGAG+AGG + chr2.2:15542914-15542933 MS.gene059859:intron 40.0%
! CTTCCCCCTTTAGTTTACAT+TGG + chr2.2:15542909-15542928 MS.gene059859:intron 40.0%
! GCACTAGTTGGTTCATACAA+GGG + chr2.2:15544062-15544081 MS.gene059859:CDS 40.0%
! GTAATGGAGGTTGTTCTAAG+GGG + chr2.2:15541035-15541054 MS.gene059859:CDS 40.0%
! GTTGATGTTGTTGTTGGAGT+TGG - chr2.2:15540247-15540266 None:intergenic 40.0%
! GTTGTTGCTTATGGAGAAAC+AGG + chr2.2:15541420-15541439 MS.gene059859:CDS 40.0%
! TAGTGGATCTTTGGATGCTA+AGG + chr2.2:15543861-15543880 MS.gene059859:CDS 40.0%
! TGACCTTTAAAGGAGCAAAC+GGG - chr2.2:15541625-15541644 None:intergenic 40.0%
! TGCACTAGTTGGTTCATACA+AGG + chr2.2:15544061-15544080 MS.gene059859:CDS 40.0%
! TTTCTTGGTCTTCGTCTTCT+TGG - chr2.2:15540364-15540383 None:intergenic 40.0%
! TTTGAGACCAATTATGCGCA+AGG + chr2.2:15543613-15543632 MS.gene059859:intron 40.0%
!! AATGGGAGTAATGGTAATGG+AGG + chr2.2:15541022-15541041 MS.gene059859:CDS 40.0%
!! ATCTGCTGATTCTCGAATAC+GGG + chr2.2:15544423-15544442 MS.gene059859:CDS 40.0%
!! CAAGAGTGTTGCTAGTTCAA+TGG + chr2.2:15541090-15541109 MS.gene059859:CDS 40.0%
!! CATCTGCTGATTCTCGAATA+CGG + chr2.2:15544422-15544441 MS.gene059859:CDS 40.0%
!! CCGGTGTTACCATAACAATA+AGG - chr2.2:15542984-15543003 None:intergenic 40.0%
!! GGTAATGGAGGTTGTTCTAA+GGG + chr2.2:15541034-15541053 MS.gene059859:CDS 40.0%
!! GGTTGTTGATGGTATTGATC+TGG + chr2.2:15544444-15544463 MS.gene059859:CDS 40.0%
!! GTTGGTGTTGATGTTGTTGT+TGG - chr2.2:15540253-15540272 None:intergenic 40.0%
!! TGGGTGGAATTGTTTTCAAG+TGG + chr2.2:15541914-15541933 MS.gene059859:intron 40.0%
!! TGGTAATGGAGGTTGTTCTA+AGG + chr2.2:15541033-15541052 MS.gene059859:CDS 40.0%
!! TGTTCTAAGGGGAAGAAGAA+AGG + chr2.2:15541046-15541065 MS.gene059859:CDS 40.0%
!!! TTGTTTTCAAGTGGCTGAAC+AGG + chr2.2:15541923-15541942 MS.gene059859:intron 40.0%
AAAAATGTCAGCCTGGGGTA+TGG + chr2.2:15545125-15545144 MS.gene059859:CDS 45.0%
AACCTGAGTTGCAGTCATGT+AGG + chr2.2:15543443-15543462 MS.gene059859:intron 45.0%
ACCACGTGAAAGGGCAAAAT+CGG - chr2.2:15540507-15540526 None:intergenic 45.0%
AGAGATACTTCGTCGGAGAA+AGG + chr2.2:15541145-15541164 MS.gene059859:CDS 45.0%
AGGGTGAGAGTGAGACAATA+TGG + chr2.2:15541229-15541248 MS.gene059859:CDS 45.0%
AGTAACAATCACCATACCCC+AGG - chr2.2:15545139-15545158 None:intergenic 45.0%
AGTACTGTTCCCGGTAATTC+TGG + chr2.2:15540641-15540660 MS.gene059859:CDS 45.0%
ATGATGTGCTTGACCTCTCT+TGG + chr2.2:15541650-15541669 MS.gene059859:CDS 45.0%
ATGGCATTGTAAGGTGGGAT+TGG - chr2.2:15540533-15540552 None:intergenic 45.0%
ATTCTGACAATTGTGGCCAC+TGG + chr2.2:15544171-15544190 MS.gene059859:intron 45.0%
CATGACTGCAACTCAGGTTT+AGG - chr2.2:15543442-15543461 None:intergenic 45.0%
CGGAATATGGCATTGTAAGG+TGG - chr2.2:15540539-15540558 None:intergenic 45.0%
CGGAGTTACGTTGTGATTCT+AGG + chr2.2:15542280-15542299 MS.gene059859:intron 45.0%
CGGATCGACAAGTTGTTGAT+TGG + chr2.2:15543902-15543921 MS.gene059859:CDS 45.0%
CTAAGGGGAAGAAGAAAGGA+GGG + chr2.2:15541050-15541069 MS.gene059859:CDS 45.0%
CTAGGCCTTTCTTGGAAAGA+CGG + chr2.2:15542298-15542317 MS.gene059859:intron 45.0%
GAAAAAAAACGGAGGGAACG+AGG - chr2.2:15543748-15543767 None:intergenic 45.0%
GAATCACAACGTAACTCCGT+TGG - chr2.2:15542279-15542298 None:intergenic 45.0%
GAGGCAACTTACACACAACA+TGG + chr2.2:15542343-15542362 MS.gene059859:intron 45.0%
GATTCATGTTTGGCAGGTTG+TGG + chr2.2:15541378-15541397 MS.gene059859:CDS 45.0%
GATTGGGTTACCACGTGAAA+GGG - chr2.2:15540516-15540535 None:intergenic 45.0%
GCACTTGCTCTCATCTTCAA+TGG + chr2.2:15543295-15543314 MS.gene059859:intron 45.0%
GCTACGGATGATAGTCAAGA+TGG + chr2.2:15541187-15541206 MS.gene059859:CDS 45.0%
GGAAAAATGAAGCCGATTGC+AGG + chr2.2:15544716-15544735 MS.gene059859:CDS 45.0%
GGCAAAGTAGAAGAATTCCC+CGG - chr2.2:15540737-15540756 None:intergenic 45.0%
GGGAAATATCTTGCTAGTGC+TGG + chr2.2:15541343-15541362 MS.gene059859:CDS 45.0%
GGGGAATTCTTCTACTTTGC+CGG + chr2.2:15540736-15540755 MS.gene059859:CDS 45.0%
GGGTGAGAGTGAGACAATAT+GGG + chr2.2:15541230-15541249 MS.gene059859:CDS 45.0%
GGTATGGTGATTGTTACTGC+TGG + chr2.2:15545141-15545160 MS.gene059859:CDS 45.0%
GGTGACACCTTTACTTCTGT+TGG - chr2.2:15544743-15544762 None:intergenic 45.0%
GTCGTTGTTGCTATCAAGCT+CGG - chr2.2:15544875-15544894 None:intergenic 45.0%
GTGAAATCCATACTGACACG+AGG - chr2.2:15545090-15545109 None:intergenic 45.0%
GTGAGTGCAAACACATGTTC+GGG - chr2.2:15541595-15541614 None:intergenic 45.0%
GTTCATTTCATGGACCTGAG+AGG + chr2.2:15541209-15541228 MS.gene059859:CDS 45.0%
GTTGAGTTTGGACCAGTTTG+TGG + chr2.2:15541567-15541586 MS.gene059859:CDS 45.0%
GTTGCTTATGGAGAAACAGG+AGG + chr2.2:15541423-15541442 MS.gene059859:CDS 45.0%
TACAGGTGTAGGAGGATGAT+TGG - chr2.2:15544911-15544930 None:intergenic 45.0%
TACTGGGAGACAGTTGACTA+TGG + chr2.2:15540898-15540917 MS.gene059859:CDS 45.0%
TATACACCTGATGGTCAGGT+TGG + chr2.2:15543958-15543977 MS.gene059859:intron 45.0%
TCCAGAAGATTATCCGCCAA+AGG - chr2.2:15541508-15541527 None:intergenic 45.0%
TCTAAGGGGAAGAAGAAAGG+AGG + chr2.2:15541049-15541068 MS.gene059859:CDS 45.0%
TGGATGCTAAGGTTCGCATA+TGG + chr2.2:15543872-15543891 MS.gene059859:CDS 45.0%
TGGCATTGTAAGGTGGGATT+GGG - chr2.2:15540532-15540551 None:intergenic 45.0%
TTCGTCTTCTTGGTCAGAGT+TGG - chr2.2:15540354-15540373 None:intergenic 45.0%
TTCTTCTACTTTGCCGGACA+CGG + chr2.2:15540742-15540761 MS.gene059859:CDS 45.0%
TTCTTGGTCAGAGTTGGAGT+TGG - chr2.2:15540348-15540367 None:intergenic 45.0%
TTCTTTGGGCAGGGGTTTAT+TGG + chr2.2:15543108-15543127 MS.gene059859:intron 45.0%
TTGTGGAGTCTGAGAGGAAA+GGG + chr2.2:15541395-15541414 MS.gene059859:CDS 45.0%
! ACACCGAAGTTTTCCTCTAC+AGG - chr2.2:15544928-15544947 None:intergenic 45.0%
! AGTGTTGCTAGTTCAATGGC+GGG + chr2.2:15541094-15541113 MS.gene059859:CDS 45.0%
! CTTCTGGAGAGGAAGAGAAA+GGG + chr2.2:15541520-15541539 MS.gene059859:CDS 45.0%
! GAAAGGGGAGTTGTTGCTTA+TGG + chr2.2:15541411-15541430 MS.gene059859:CDS 45.0%
! GAGGAATTTGAGATGACGGT+TGG + chr2.2:15540920-15540939 MS.gene059859:CDS 45.0%
! GAGTGTTGCTAGTTCAATGG+CGG + chr2.2:15541093-15541112 MS.gene059859:CDS 45.0%
! GCTGAGTGTTTTCGATGACT+TGG + chr2.2:15541727-15541746 MS.gene059859:intron 45.0%
! GGTGTTGGAAATGGGAGTAA+TGG + chr2.2:15541013-15541032 MS.gene059859:CDS 45.0%
! TCCTTTGGCGGATAATCTTC+TGG + chr2.2:15541504-15541523 MS.gene059859:CDS 45.0%
! TCTCGAATACGGGTTGTTGA+TGG + chr2.2:15544433-15544452 MS.gene059859:CDS 45.0%
! TCTTCTGGAGAGGAAGAGAA+AGG + chr2.2:15541519-15541538 MS.gene059859:CDS 45.0%
! TTCTGGAGAGGAAGAGAAAG+GGG + chr2.2:15541521-15541540 MS.gene059859:CDS 45.0%
! TTTTCCTCTACAGGTGTAGG+AGG - chr2.2:15544919-15544938 None:intergenic 45.0%
!! AAAGTGAAGGAGGTTGGTAC+TGG + chr2.2:15540881-15540900 MS.gene059859:CDS 45.0%
!! AAGTGAAGGAGGTTGGTACT+GGG + chr2.2:15540882-15540901 MS.gene059859:CDS 45.0%
!! ACGAGTACGACGTTCTGAAA+CGG - chr2.2:15540459-15540478 None:intergenic 45.0%
!! ATATCTTGCTAGTGCTGGTG+AGG + chr2.2:15541348-15541367 MS.gene059859:CDS 45.0%
!! ATTGTTACTGCTGGTCTTCG+AGG + chr2.2:15545150-15545169 MS.gene059859:CDS 45.0%
!! GCTGCTTGTTATACACCTGA+TGG + chr2.2:15543949-15543968 MS.gene059859:CDS 45.0%
!! TAGTTCAATGGCGGGTCATA+AGG + chr2.2:15541102-15541121 MS.gene059859:CDS 45.0%
!! TTCCGGTGTTGATTTCTTGC+CGG + chr2.2:15540715-15540734 MS.gene059859:CDS 45.0%
!! TTTACCATTTGCTGTGAGGG+AGG - chr2.2:15544656-15544675 None:intergenic 45.0%
AAGTGGCTGAACAGGCATCA+AGG + chr2.2:15541931-15541950 MS.gene059859:intron 50.0%
ACTGTTCCCGGTAATTCTGG+CGG + chr2.2:15540644-15540663 MS.gene059859:CDS 50.0%
ACTGTTTGTCGCACTCGCAA+TGG - chr2.2:15544998-15545017 None:intergenic 50.0%
ACTTCTGTTGGGCCTGCAAT+CGG - chr2.2:15544731-15544750 None:intergenic 50.0%
AGTGGCTGAACAGGCATCAA+GGG + chr2.2:15541932-15541951 MS.gene059859:intron 50.0%
ATACTTCGTCGGAGAAAGGC+GGG + chr2.2:15541149-15541168 MS.gene059859:CDS 50.0%
ATGTGTCAGTAGCCATTCCC+TGG + chr2.2:15544797-15544816 MS.gene059859:CDS 50.0%
CATGTTCGGGAACCACAAAC+TGG - chr2.2:15541582-15541601 None:intergenic 50.0%
CATTCTATCTCACCCGTGTC+CGG - chr2.2:15540758-15540777 None:intergenic 50.0%
CCTACTTGTTCCCACAGTAC+AGG - chr2.2:15542142-15542161 None:intergenic 50.0%
CCTCTCTTGGTCTAAGTCTC+AGG + chr2.2:15541663-15541682 MS.gene059859:CDS 50.0%
CCTGAGACTTAGACCAAGAG+AGG - chr2.2:15541666-15541685 None:intergenic 50.0%
CCTGTACTGTGGGAACAAGT+AGG + chr2.2:15542139-15542158 MS.gene059859:intron 50.0%
CGCATAAGCTCCTGCACAAT+CGG - chr2.2:15540953-15540972 None:intergenic 50.0%
CTTGAACCAACCTGACCATC+AGG - chr2.2:15543967-15543986 None:intergenic 50.0%
GAAGAATTCTTTCCGGACGG+AGG - chr2.2:15540683-15540702 None:intergenic 50.0%
GATACTTCGTCGGAGAAAGG+CGG + chr2.2:15541148-15541167 MS.gene059859:CDS 50.0%
GGAAGAAGAAAGGAGGGAGT+TGG + chr2.2:15541056-15541075 MS.gene059859:CDS 50.0%
GGATTGGGTTACCACGTGAA+AGG - chr2.2:15540517-15540536 None:intergenic 50.0%
GTTGGAACAAGAGCAGGAAG+AGG - chr2.2:15540330-15540349 None:intergenic 50.0%
GTTGGAGTTGGAACAAGAGC+AGG - chr2.2:15540336-15540355 None:intergenic 50.0%
GTTGTGGAGTCTGAGAGGAA+AGG + chr2.2:15541394-15541413 MS.gene059859:CDS 50.0%
TCAAAGCCCTCGTGTCAGTA+TGG + chr2.2:15545080-15545099 MS.gene059859:CDS 50.0%
TCATCCTCCTACACCTGTAG+AGG + chr2.2:15544912-15544931 MS.gene059859:CDS 50.0%
TCTTCTACTTTGCCGGACAC+GGG + chr2.2:15540743-15540762 MS.gene059859:CDS 50.0%
TGCAGGCCCAACAGAAGTAA+AGG + chr2.2:15544733-15544752 MS.gene059859:CDS 50.0%
TGGGAGACAGTTGACTATGG+AGG + chr2.2:15540901-15540920 MS.gene059859:CDS 50.0%
TGGTCAATCTCCGATTGTGC+AGG + chr2.2:15540940-15540959 MS.gene059859:CDS 50.0%
TGTGGAGTCTGAGAGGAAAG+GGG + chr2.2:15541396-15541415 MS.gene059859:CDS 50.0%
! GGTTCGCATATGGAGCATTC+CGG + chr2.2:15543882-15543901 MS.gene059859:CDS 50.0%
! TCCGATTTTGCCCTTTCACG+TGG + chr2.2:15540503-15540522 MS.gene059859:CDS 50.0%
! TGGCGGATAATCTTCTGGAG+AGG + chr2.2:15541509-15541528 MS.gene059859:CDS 50.0%
!! AGAGGAAAACTTCGGTGTCG+AGG + chr2.2:15544930-15544949 MS.gene059859:CDS 50.0%
!! CGACGTTCTGAAACGGAAGA+AGG - chr2.2:15540452-15540471 None:intergenic 50.0%
!! CTGATGGTCAGGTTGGTTCA+AGG + chr2.2:15543965-15543984 MS.gene059859:intron 50.0%
!! GAGGAAAACTTCGGTGTCGA+GGG + chr2.2:15544931-15544950 MS.gene059859:CDS 50.0%
!! TCCGGTGTTGATTTCTTGCC+GGG + chr2.2:15540716-15540735 MS.gene059859:CDS 50.0%
ACCCGTGACGTTGTCTCCTT+TGG + chr2.2:15541489-15541508 MS.gene059859:CDS 55.0%
ATGGTAACACCGGTGGGACT+AGG + chr2.2:15542991-15543010 MS.gene059859:intron 55.0%
CCCATTTCCAACACCACCAC+CGG - chr2.2:15541008-15541027 None:intergenic 55.0%
CCCCGGCAAGAAATCAACAC+CGG - chr2.2:15540720-15540739 None:intergenic 55.0%
CGCCAAAGGAGACAACGTCA+CGG - chr2.2:15541494-15541513 None:intergenic 55.0%
CGGCAGAATCATGAGGAGAC+CGG + chr2.2:15540974-15540993 MS.gene059859:CDS 55.0%
CGGTCTCCTCATGATTCTGC+CGG - chr2.2:15540976-15540995 None:intergenic 55.0%
CGTGACGTTGTCTCCTTTGG+CGG + chr2.2:15541492-15541511 MS.gene059859:CDS 55.0%
CTCGCAATGGTTGCATGGTG+TGG - chr2.2:15544985-15545004 None:intergenic 55.0%
CTGTGAGGGAGGCTGAAATC+TGG - chr2.2:15544645-15544664 None:intergenic 55.0%
GAGGGTTCACGATCTGCTTC+AGG + chr2.2:15544949-15544968 MS.gene059859:CDS 55.0%
GCCAAAGGAGACAACGTCAC+GGG - chr2.2:15541493-15541512 None:intergenic 55.0%
GCCTGGTATGGGTGATGCAT+GGG + chr2.2:15544819-15544838 MS.gene059859:CDS 55.0%
GGCCTACATGACTGCAACTC+AGG - chr2.2:15543448-15543467 None:intergenic 55.0%
TCAGCCTCCCTCACAGCAAA+TGG + chr2.2:15544649-15544668 MS.gene059859:CDS 55.0%
TCCCATGCATCACCCATACC+AGG - chr2.2:15544823-15544842 None:intergenic 55.0%
TCGCACTCGCAATGGTTGCA+TGG - chr2.2:15544990-15545009 None:intergenic 55.0%
TCTGTGCAGGGTGCACTAGT+TGG + chr2.2:15544050-15544069 MS.gene059859:intron 55.0%
TGGACAAAACAGTGCGGCTG+TGG + chr2.2:15543315-15543334 MS.gene059859:CDS 55.0%
TGGAGAGGAAGAGAAAGGGG+AGG + chr2.2:15541524-15541543 MS.gene059859:CDS 55.0%
TGTCTCACTCTCACCCTCTC+AGG - chr2.2:15541226-15541245 None:intergenic 55.0%
TTGTGCAGGAGCTTATGCGC+CGG + chr2.2:15540954-15540973 MS.gene059859:CDS 55.0%
TTTCCGGACGGAGGTTTAGC+CGG - chr2.2:15540674-15540693 None:intergenic 55.0%
! CCGGTGGTGGTGTTGGAAAT+GGG + chr2.2:15541005-15541024 MS.gene059859:CDS 55.0%
! TATGCGCCGGCAGAATCATG+AGG + chr2.2:15540967-15540986 MS.gene059859:CDS 55.0%
!! CAATGGCGGGTCATAAGGAG+AGG + chr2.2:15541107-15541126 MS.gene059859:CDS 55.0%
!! CCGGTGTTGATTTCTTGCCG+GGG + chr2.2:15540717-15540736 MS.gene059859:CDS 55.0%
ACCCATACCAGGCCAGGGAA+TGG - chr2.2:15544812-15544831 None:intergenic 60.0%
AGCCATTCCCTGGCCTGGTA+TGG + chr2.2:15544807-15544826 MS.gene059859:CDS 60.0%
AGGGGAGGTCGTCCGTTAGT+AGG + chr2.2:15541539-15541558 MS.gene059859:CDS 60.0%
CGGGGATCCGCCAGAATTAC+CGG - chr2.2:15540654-15540673 None:intergenic 60.0%
GAGGAGACCGGTGATGTAGC+CGG + chr2.2:15540986-15541005 MS.gene059859:CDS 60.0%
GCATCACCCATACCAGGCCA+GGG - chr2.2:15544817-15544836 None:intergenic 60.0%
GCCATTCCCTGGCCTGGTAT+GGG + chr2.2:15544808-15544827 MS.gene059859:CDS 60.0%
GGAGACAACGTCACGGGTTC+CGG - chr2.2:15541487-15541506 None:intergenic 60.0%
GGCAGGTTGTGGAGTCTGAG+AGG + chr2.2:15541389-15541408 MS.gene059859:CDS 60.0%
GGCCTGGTATGGGTGATGCA+TGG + chr2.2:15544818-15544837 MS.gene059859:CDS 60.0%
GGGACTAGGATGAGCACCTC+TGG + chr2.2:15543005-15543024 MS.gene059859:intron 60.0%
GGGGATCCGCCAGAATTACC+GGG - chr2.2:15540653-15540672 None:intergenic 60.0%
GGTGCTCATCCTAGTCCCAC+CGG - chr2.2:15543003-15543022 None:intergenic 60.0%
TCAGTAGCCATTCCCTGGCC+TGG + chr2.2:15544802-15544821 MS.gene059859:CDS 60.0%
TGCATCACCCATACCAGGCC+AGG - chr2.2:15544818-15544837 None:intergenic 60.0%
TTCCGGACGGAGGTTTAGCC+GGG - chr2.2:15540673-15540692 None:intergenic 60.0%
! ACCACCACCGGCTACATCAC+CGG - chr2.2:15540996-15541015 None:intergenic 60.0%
! CGGTAATTCTGGCGGATCCC+CGG + chr2.2:15540652-15540671 MS.gene059859:CDS 60.0%
! GATGTAGCCGGTGGTGGTGT+TGG + chr2.2:15540998-15541017 MS.gene059859:CDS 60.0%
! GCCGGTGGTGGTGTTGGAAA+TGG + chr2.2:15541004-15541023 MS.gene059859:CDS 60.0%
! TGGCGGGTCATAAGGAGAGG+AGG + chr2.2:15541110-15541129 MS.gene059859:CDS 60.0%
ACCGGTGATGTAGCCGGTGG+TGG + chr2.2:15540992-15541011 MS.gene059859:CDS 65.0%
CTTCGTCGGAGAAAGGCGGG+AGG + chr2.2:15541152-15541171 MS.gene059859:CDS 65.0%
GAGACCGGTGATGTAGCCGG+TGG + chr2.2:15540989-15541008 MS.gene059859:CDS 65.0%
GAGGAGGTCGAGCTCGGCTA+CGG + chr2.2:15541171-15541190 MS.gene059859:CDS 65.0%
TCCCCGGCTAAACCTCCGTC+CGG + chr2.2:15540668-15540687 MS.gene059859:CDS 65.0%
TCCGGACGGAGGTTTAGCCG+GGG - chr2.2:15540672-15540691 None:intergenic 65.0%
AGGCGGGAGGAGGTCGAGCT+CGG + chr2.2:15541165-15541184 MS.gene059859:CDS 70.0%
CGTCGGAGAAAGGCGGGAGG+AGG + chr2.2:15541155-15541174 MS.gene059859:CDS 70.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 15540212 15545218 15540212 ID=MS.gene059859
chr2.2 mRNA 15540212 15545218 15540212 ID=MS.gene059859.t1;Parent=MS.gene059859
chr2.2 exon 15540212 15541684 15540212 ID=MS.gene059859.t1.exon1;Parent=MS.gene059859.t1
chr2.2 CDS 15540212 15541684 15540212 ID=cds.MS.gene059859.t1;Parent=MS.gene059859.t1
chr2.2 exon 15543296 15543386 15543296 ID=MS.gene059859.t1.exon2;Parent=MS.gene059859.t1
chr2.2 CDS 15543296 15543386 15543296 ID=cds.MS.gene059859.t1;Parent=MS.gene059859.t1
chr2.2 exon 15543818 15543975 15543818 ID=MS.gene059859.t1.exon3;Parent=MS.gene059859.t1
chr2.2 CDS 15543818 15543975 15543818 ID=cds.MS.gene059859.t1;Parent=MS.gene059859.t1
chr2.2 exon 15544059 15544110 15544059 ID=MS.gene059859.t1.exon4;Parent=MS.gene059859.t1
chr2.2 CDS 15544059 15544110 15544059 ID=cds.MS.gene059859.t1;Parent=MS.gene059859.t1
chr2.2 exon 15544223 15544305 15544223 ID=MS.gene059859.t1.exon5;Parent=MS.gene059859.t1
chr2.2 CDS 15544223 15544305 15544223 ID=cds.MS.gene059859.t1;Parent=MS.gene059859.t1
chr2.2 exon 15544388 15544481 15544388 ID=MS.gene059859.t1.exon6;Parent=MS.gene059859.t1
chr2.2 CDS 15544388 15544481 15544388 ID=cds.MS.gene059859.t1;Parent=MS.gene059859.t1
chr2.2 exon 15544623 15545218 15544623 ID=MS.gene059859.t1.exon7;Parent=MS.gene059859.t1
chr2.2 CDS 15544623 15545218 15544623 ID=cds.MS.gene059859.t1;Parent=MS.gene059859.t1
Gene Sequence

>MS.gene059859

ATGAACAAACCCATTCTCATTTCTCAAGAAGACCAACTCCAACAACAACATCAACACCAACAACTAGACCAACAAGATTTCTTCTACGAATCAAACGACCGTTTACTCTCTCTCTCCTCTTCCTGCTCTTGTTCCAACTCCAACTCTGACCAAGAAGACGAAGACCAAGAAAACAACAACAACAATAATTGTAATTACAATTTTGCCCTTAACAGTTACGACATATGGATCTCTCAACCTTCTTCCGTTTCAGAACGTCGTACTCGTCTTCTTCAAACTATTGGTCTTTCTTCCGATTTTGCCCTTTCACGTGGTAACCCAATCCCACCTTACAATGCCATATTCCGATCCAAATCTGACGGTCATAACAACAACAACAATTCTAACAACAACTCCTGTTTTATCTCTTCTTCTACTGTAAATGTAAATAGTACTGTTCCCGGTAATTCTGGCGGATCCCCGGCTAAACCTCCGTCCGGAAAGAATTCTTCTAGAAGAAGTCATTCCGGTGTTGATTTCTTGCCGGGGAATTCTTCTACTTTGCCGGACACGGGTGAGATAGAATGCGATGAAATTGAAAAAGGGGAAGAACAAGCTTGTACCATAAGAGATCTTGATAATGGAAAAGAATTTGTTGTGAAAGAAGTTAGAGAAGATGGAATGTGGAATAAAGTGAAGGAGGTTGGTACTGGGAGACAGTTGACTATGGAGGAATTTGAGATGACGGTTGGTCAATCTCCGATTGTGCAGGAGCTTATGCGCCGGCAGAATCATGAGGAGACCGGTGATGTAGCCGGTGGTGGTGTTGGAAATGGGAGTAATGGTAATGGAGGTTGTTCTAAGGGGAAGAAGAAAGGAGGGAGTTGGTTGAAGAGTATCAAGAGTGTTGCTAGTTCAATGGCGGGTCATAAGGAGAGGAGGAGTAGTGATGAGAGAGATACTTCGTCGGAGAAAGGCGGGAGGAGGTCGAGCTCGGCTACGGATGATAGTCAAGATGGTTCATTTCATGGACCTGAGAGGGTGAGAGTGAGACAATATGGGAAATCATGTAAAGAGTTAACTGCATTGTATAAGAGTCAAGAGATTCAAGCTCATAATGGATCAATTTGGAGTATTAAGTTTAGTTTAGATGGGAAATATCTTGCTAGTGCTGGTGAGGATTGTGTGATTCATGTTTGGCAGGTTGTGGAGTCTGAGAGGAAAGGGGAGTTGTTGCTTATGGAGAAACAGGAGGATGTTAATGTTAATATGTTATTTCTTGTTAATGGGTCGCCGGAACCCGTGACGTTGTCTCCTTTGGCGGATAATCTTCTGGAGAGGAAGAGAAAGGGGAGGTCGTCCGTTAGTAGGAAGTCGTTGAGTTTGGACCAGTTTGTGGTTCCCGAACATGTGTTTGCACTCACTGAAAAACCCGTTTGCTCCTTTAAAGGTCATTTGCATGATGTGCTTGACCTCTCTTGGTCTAAGTCTCAGGTTAGCTTCTGTTTTTTGGATAGGTCTTTTTGTTTTGGCATTGCTGAGTGTTTTCGATGACTTGGTGTCTATGTTTGTAAAATTTACTATTCACTCTTATATGGCATCGTTGGCTTTTGTTAAAAGGTTTTCTATTATTGACCGATGAACTGATGAATTGGCTTTTGTTGAACAATTTTTAGTTTTATTTTTGTGCTTATATCACAAAACTCAGTATTGATTTTATAATTGGGTGGAATTGTTTTCAAGTGGCTGAACAGGCATCAAGGGACAGATATTAGTTCCAAGTTGCATATAAGTGTACATTTAACTGTTAAAATTGGTTCCAAGTTGTATAAGAGTACATTTAAGTGTTAAAAATGTCTTGTACTAGTTATTAGTTATTAGAGTACATACAGGACTATTGCTAGTTTTAGTGACTCTCCTTTCGGTTGCATTATTGCAGTCTTAAAAACCTGTACTGTGGGAACAAGTAGGAAAAGTTGTCACAGTGAAAAGATATCTGGATCTTTTTTCTTCTCTCCTACTCAATCAGACTCAAATTTGTGTTTATAAACTTCGTTTTTAATGGGTCTAAAATGGTTTATTTTTCCAACGGAGTTACGTTGTGATTCTAGGCCTTTCTTGGAAAGACGGCATTTAAAATGAACAATTTAGGGAGGCAACTTACACACAACATGGTAGCAGTGCGTTTAGAGATTTCTTTATGTTTGATATTTTCTTTGACAAGGAAACATGGTTGAGTATATCTTAATTTTTTACTGCAATTGCTTTAGTGAACTGTGATGTGGAGAAATTAAGATGTCTGTTGAATAAAGCGGTAACTTACTTAGGATGGTTATTTGTAACTTGGGGTGGGGAGTTGCTAAATGCTAAACTAGACAATATGTTGATGTCTTTACAATGGAAGAGTAAATTTATATTGTTTTAAAATTAACTTCTGATTAAGTAGGCTGTAATCCATCCTTTTACCACAAAACTAAAATTGTATTTATTTCCCCAGCTCAACAAATGTGTTTGAAATTTTAATGACTTGCTCACTTACCAAATTATTTTTGTTGTTAAACCACTTCACATTCAATGTTACGACAGACAAAAGTTATTTGTAATTGGTTCTAGTTTATATTGTTTTATGAAACCATATTTAACATAAAAGGTTTGGATCCTATTAAAGAGGGGAAAAAACCTTTGAAAGTTTTGAACTGATTTGTTTAGTTTGCCAAACTTCCCCCTTTAGTTTACATTGGAGAGGATGTTTATGTAAACTAGGCATTGCAACATCCTATTTGATTCATACCTTATTGTTATGGTAACACCGGTGGGACTAGGATGAGCACCTCTGGTAGTTATTAAAATTTGAAGAATGAATTATGATGATTGATAGCATAGCTAGCTGAGACAATTTCTTTGAATTTTGAATAGATTCTTTGGGCAGGGGTTTATTGGTTTATTTATTTAGATACTTTTTTTTTTCTTTCTATTAATGTCTGTTGAATAATATTTAAAATTGAAATATTTTTCATAAATCAGTTCTTTTTGTTCTTGAAATACTAATTAAAATACCAGTGTTTAGATCATCCTTGTAATGTTTATACTTCGCATTTTGCACAGCACTTGCTCTCATCTTCAATGGACAAAACAGTGCGGCTGTGGCATTTGTCTAGCAAGTCTTGTTTGAAGATTTTTTCACACAGTGACTATGGTGAGTAAATGTAATCATTCTATCATCTTGCAATAAACTTATCTTCAGACTCCCTAAACCTGAGTTGCAGTCATGTAGGCCACTCTAATGTGCATGTATATATAACAGAGCACCCGTGTACTTTTTATGTGTTTTTATCGAAGTTTCTGCTGCCTCTTCCCTATTAAAAATTGAATTAGATTTGAAGTCTGTCCTATCCCTATCCAATCTGATTCAAGATATAGTTTTTGAGACCAATTATGCGCAAGGCACAATTTTATCATAATATTTGTCTTCACTGCATATAGGACAAGTTATACAGGAGTTCTTTAATATCCTATAGGGTGGTTAAAATTTAGGAGTTAACGCAATTTAATACCCTCGTTCCCTCCGTTTTTTTTCTTTGCTAATTATACCTTTTTTCGTTTCTATCTGCTTTCTGTCTGGCACAGTAACTTGCATCCAGTTTAATCCTGTTGATGATAGATACTTCATTAGTGGATCTTTGGATGCTAAGGTTCGCATATGGAGCATTCCGGATCGACAAGTTGTTGATTGGATCGATCTTCATGAGATGGTCACTGCTGCTTGTTATACACCTGATGGTCAGGTTGGTTCAAGGTTAATATGCATCCATTTCAGACTTCAGAAATTCAACAGTTAACTTACAACTTAGTTAAATTGTCTGTGCAGGGTGCACTAGTTGGTTCATACAAGGGTAGCTGTCATTTATATAATACATCTGGTACTGTCAGAGGCTTTTTCTTTTCTTTATATAATAATTGTGTCTATTTATCTATACTCTATTCTGACAATTGTGGCCACTGGTTAACATCTTGTTTTTATATTCTGTTCAGAAAATAAGTTGCAACAGAAAAGTCAGATCAATCTGCAGAACAAGAAAAAGAAATCAAATCACAAGAAAATTACTGGTTTCCAGGTAATTTAATGATTTACTGGCTTACAGCTGTACCAAAGTTATGATGCTTATGATTGTCTTTGTATTTGCATTTTATTTACAGTTTGCCCCAGGAAGTTCATCAGAAGTACTTATCACATCTGCTGATTCTCGAATACGGGTTGTTGATGGTATTGATCTGGTTCATAAGTTTAAAGGTGTGTAACACGAGCAAACAACAAGTAAAATTTATTTAAAAGATCATATAACAAGTGAATTGACCATTTGTATGATAAATTGTATTTAATTATATGCTCAAACCAATTCGTGCTGATCAAACTGATGTAAGTTTCTTGCAGGCTTTCGAAATGCAAGTAGCCAGATTTCAGCCTCCCTCACAGCAAATGGTAAATATATTGTTGCTGCAAGTGAGGATTCCCATGTATACATCTGGAAAAATGAAGCCGATTGCAGGCCCAACAGAAGTAAAGGTGTCACCGTGACACAGTCCTATGAACATTTTCACTGTAAAGATGTGTCAGTAGCCATTCCCTGGCCTGGTATGGGTGATGCATGGGACATGCATGATACATTTTCTGGAGCACAAACCGAGCTTGATAGCAACAACGACGAAATCGCATCAGCCAATCATCCTCCTACACCTGTAGAGGAAAACTTCGGTGTCGAGGGTTCACGATCTGCTTCAGGTTATAATAGTCCACACCATGCAACCATTGCGAGTGCGACAAACAGTTACTTCTTCGATAGAATTTCTGCAACATGGCCGGAAGAAAAACTTCTTCTAGCTGCAAGAAATCAAAGCCCTCGTGTCAGTATGGATTTCACAAATGGGGTAAGTCAAAAAATGTCAGCCTGGGGTATGGTGATTGTTACTGCTGGTCTTCGAGGTGAGATTAGAACTTTCCAAAATTTTGGATTGCCACTTCGAATATAA
Protein sequence

>MS.gene059859.t1

MNKPILISQEDQLQQQHQHQQLDQQDFFYESNDRLLSLSSSCSCSNSNSDQEDEDQENNNNNNCNYNFALNSYDIWISQPSSVSERRTRLLQTIGLSSDFALSRGNPIPPYNAIFRSKSDGHNNNNNSNNNSCFISSSTVNVNSTVPGNSGGSPAKPPSGKNSSRRSHSGVDFLPGNSSTLPDTGEIECDEIEKGEEQACTIRDLDNGKEFVVKEVREDGMWNKVKEVGTGRQLTMEEFEMTVGQSPIVQELMRRQNHEETGDVAGGGVGNGSNGNGGCSKGKKKGGSWLKSIKSVASSMAGHKERRSSDERDTSSEKGGRRSSSATDDSQDGSFHGPERVRVRQYGKSCKELTALYKSQEIQAHNGSIWSIKFSLDGKYLASAGEDCVIHVWQVVESERKGELLLMEKQEDVNVNMLFLVNGSPEPVTLSPLADNLLERKRKGRSSVSRKSLSLDQFVVPEHVFALTEKPVCSFKGHLHDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKSCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPDRQVVDWIDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSQINLQNKKKKSNHKKITGFQFAPGSSSEVLITSADSRIRVVDGIDLVHKFKGFRNASSQISASLTANGKYIVAASEDSHVYIWKNEADCRPNRSKGVTVTQSYEHFHCKDVSVAIPWPGMGDAWDMHDTFSGAQTELDSNNDEIASANHPPTPVEENFGVEGSRSASGYNSPHHATIASATNSYFFDRISATWPEEKLLLAARNQSPRVSMDFTNGVSQKMSAWGMVIVTAGLRGEIRTFQNFGLPLRI