Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059967.t1 | XP_003608891.1 | 97.2 | 362 | 10 | 0 | 1 | 362 | 1 | 362 | 2.60E-196 | 694.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059967.t1 | Q94BN0 | 55.8 | 339 | 137 | 6 | 5 | 331 | 23 | 360 | 3.8e-95 | 349.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059967.t1 | G7JMM8 | 97.2 | 362 | 10 | 0 | 1 | 362 | 1 | 362 | 1.9e-196 | 694.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene059967.t1 | TR | TAZ |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059967 | MS.gene48295 | 0.98998 | 1.64E-180 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059967.t1 | MTR_4g104140 | 98.066 | 362 | 7 | 0 | 1 | 362 | 1 | 362 | 0.0 | 749 |
| MS.gene059967.t1 | MTR_4g104140 | 98.587 | 283 | 4 | 0 | 80 | 362 | 10 | 292 | 0.0 | 587 |
| MS.gene059967.t1 | MTR_3g075270 | 53.929 | 280 | 126 | 2 | 54 | 333 | 3 | 279 | 1.12e-111 | 328 |
| MS.gene059967.t1 | MTR_5g015680 | 46.309 | 298 | 153 | 7 | 17 | 312 | 68 | 360 | 2.02e-84 | 261 |
| MS.gene059967.t1 | MTR_5g015680 | 46.309 | 298 | 153 | 7 | 17 | 312 | 107 | 399 | 7.39e-84 | 261 |
| MS.gene059967.t1 | MTR_5g015680 | 47.328 | 262 | 132 | 6 | 57 | 316 | 12 | 269 | 3.34e-76 | 236 |
| MS.gene059967.t1 | MTR_4g104170 | 83.333 | 36 | 5 | 1 | 304 | 339 | 56 | 90 | 6.02e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059967.t1 | AT3G48360 | 61.515 | 330 | 114 | 6 | 14 | 331 | 32 | 360 | 1.83e-133 | 385 |
| MS.gene059967.t1 | AT5G63160 | 62.540 | 315 | 108 | 5 | 13 | 318 | 22 | 335 | 2.27e-130 | 378 |
| MS.gene059967.t1 | AT3G48360 | 63.636 | 286 | 92 | 5 | 14 | 288 | 32 | 316 | 2.86e-120 | 351 |
| MS.gene059967.t1 | AT5G63160 | 63.732 | 284 | 94 | 4 | 13 | 288 | 22 | 304 | 3.90e-119 | 347 |
| MS.gene059967.t1 | AT5G63160 | 64.634 | 246 | 79 | 4 | 80 | 318 | 6 | 250 | 8.33e-104 | 307 |
| MS.gene059967.t1 | AT3G48360 | 62.745 | 255 | 85 | 4 | 86 | 331 | 1 | 254 | 1.20e-103 | 306 |
| MS.gene059967.t1 | AT5G67480 | 45.364 | 302 | 159 | 6 | 17 | 316 | 61 | 358 | 7.00e-83 | 257 |
| MS.gene059967.t1 | AT5G67480 | 45.364 | 302 | 159 | 6 | 17 | 316 | 61 | 358 | 7.00e-83 | 257 |
| MS.gene059967.t1 | AT5G67480 | 45.364 | 302 | 159 | 6 | 17 | 316 | 72 | 369 | 8.34e-83 | 257 |
| MS.gene059967.t1 | AT4G37610 | 42.904 | 303 | 164 | 8 | 17 | 316 | 56 | 352 | 8.15e-76 | 238 |
| MS.gene059967.t1 | AT1G05690 | 41.528 | 301 | 170 | 5 | 17 | 316 | 55 | 350 | 1.98e-74 | 235 |
| MS.gene059967.t1 | AT1G55760 | 33.835 | 133 | 79 | 4 | 17 | 146 | 165 | 291 | 6.73e-13 | 69.3 |
| MS.gene059967.t1 | AT3G56230 | 24.845 | 161 | 120 | 1 | 24 | 183 | 120 | 280 | 2.14e-12 | 67.4 |
Find 96 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAAGGAACGCCGTGAATT+TGG | 0.203367 | 8.1:+20080022 | None:intergenic |
| CTTGCAATGTTCCTCTTTGC+AGG | 0.245278 | 8.1:-20079109 | MS.gene059967:intron |
| CCTTGCTAGTAGTTTCCATT+TGG | 0.271352 | 8.1:+20077388 | None:intergenic |
| GACCTCCATTGGTGTGGTTT+GGG | 0.288861 | 8.1:+20080284 | None:intergenic |
| GTGAATTTGGATTATTCTTT+CGG | 0.293435 | 8.1:+20080035 | None:intergenic |
| GTGAATAAAGACATCATATT+CGG | 0.296060 | 8.1:+20080257 | None:intergenic |
| AGACCTCCATTGGTGTGGTT+TGG | 0.317792 | 8.1:+20080283 | None:intergenic |
| TTCTGAGGCGATGGAGTGTT+TGG | 0.329039 | 8.1:-20079354 | MS.gene059967:CDS |
| ACTTGATATCCTCCGCTTCA+TGG | 0.330110 | 8.1:-20079605 | MS.gene059967:CDS |
| CTTGCTAGTAGTTTCCATTT+GGG | 0.348881 | 8.1:+20077389 | None:intergenic |
| AATCGTGGGATCAGATGTTT+TGG | 0.358065 | 8.1:-20077284 | MS.gene059967:CDS |
| TGCAAGAATCATCAGTTTGT+TGG | 0.365276 | 8.1:+20079126 | None:intergenic |
| TCTGATCCCACGATTGTCTA+TGG | 0.399851 | 8.1:+20077292 | None:intergenic |
| TCAATAATGTTCTCGAAAAC+AGG | 0.405232 | 8.1:+20080081 | None:intergenic |
| CAGTTGCACGGAGGATGAAA+TGG | 0.408781 | 8.1:-20079875 | MS.gene059967:CDS |
| AGAGGGTGAAGGGAGGCTGC+TGG | 0.412837 | 8.1:-20079196 | MS.gene059967:CDS |
| ACCAGGATGCTTGTGTGGGC+TGG | 0.439380 | 8.1:+20080213 | None:intergenic |
| TTCAAGCACAGGATCATGTT+TGG | 0.441776 | 8.1:+20079627 | None:intergenic |
| CGCCAGGCTCTGCGATGCAC+CGG | 0.448288 | 8.1:-20079728 | MS.gene059967:CDS |
| CAGACAATTTCAATTGAGAA+TGG | 0.449145 | 8.1:-20077435 | MS.gene059967:CDS |
| TGAATAAAGACATCATATTC+GGG | 0.450560 | 8.1:+20080258 | None:intergenic |
| TTATTAACCTCAACATGGTA+TGG | 0.459852 | 8.1:+20079296 | None:intergenic |
| TTGAACCGCGTTGAAGTGAT+TGG | 0.469408 | 8.1:+20079675 | None:intergenic |
| TGAGAATGGAGCAAGAGAAA+AGG | 0.470643 | 8.1:-20077421 | MS.gene059967:CDS |
| GATGAAAGCGGTTACGGCGG+TGG | 0.476910 | 8.1:+20080002 | None:intergenic |
| GTAGCCGATGAAAGCGGTTA+CGG | 0.477754 | 8.1:+20079996 | None:intergenic |
| ATCCGGTGCATCGCAGAGCC+TGG | 0.478068 | 8.1:+20079726 | None:intergenic |
| GTCTTTATTCACACTTCTGA+TGG | 0.479577 | 8.1:-20080246 | MS.gene059967:CDS |
| AGCAAATTCTCCACCTGTCA+AGG | 0.481574 | 8.1:-20079257 | MS.gene059967:CDS |
| AAAGGAAAGATGATCCCAAA+TGG | 0.490170 | 8.1:-20077403 | MS.gene059967:CDS |
| CAGAAGCTGAAGCCCTTGAC+AGG | 0.502805 | 8.1:+20079244 | None:intergenic |
| AACTAACCAGGATGCTTGTG+TGG | 0.507204 | 8.1:+20080208 | None:intergenic |
| CATCGCAGAGCCTGGCGAGT+TGG | 0.510849 | 8.1:+20079734 | None:intergenic |
| TGCGGAACTTTCTGAGGCGA+TGG | 0.528118 | 8.1:-20079363 | MS.gene059967:CDS |
| TCGGCTACCTCTACTCATCC+AGG | 0.528548 | 8.1:-20079981 | MS.gene059967:intron |
| TATAGAGGAGAGAGAAATCG+AGG | 0.529791 | 8.1:-20079412 | MS.gene059967:intron |
| GAAAGAATAATCCAAATTCA+CGG | 0.535992 | 8.1:-20080033 | MS.gene059967:CDS |
| TCCAGCCCACACAAGCATCC+TGG | 0.542058 | 8.1:-20080214 | MS.gene059967:intron |
| CTCAAACAAAGATGCATCAA+AGG | 0.544591 | 8.1:-20079799 | MS.gene059967:CDS |
| GTGTTTGGAGCATATATGTA+CGG | 0.548333 | 8.1:-20079339 | MS.gene059967:CDS |
| GAGGATGAAATGGACAAATA+CGG | 0.550313 | 8.1:-20079865 | MS.gene059967:CDS |
| ACCGCCGTAACCGCTTTCAT+CGG | 0.550954 | 8.1:-20080000 | MS.gene059967:CDS |
| ACACGTGAGATAGTGCCAAC+AGG | 0.553618 | 8.1:+20079836 | None:intergenic |
| TATTCGGGTAAGACCTCCAT+TGG | 0.559065 | 8.1:+20080273 | None:intergenic |
| ACATGCAAGAAGAGGGTGAA+GGG | 0.559984 | 8.1:-20079206 | MS.gene059967:CDS |
| ATGGAAACTACTAGCAAGGA+AGG | 0.562140 | 8.1:-20077384 | MS.gene059967:CDS |
| TGGATGTACTCCAACTCGCC+AGG | 0.562979 | 8.1:-20079744 | MS.gene059967:CDS |
| CGCTTTCGTCCATGAAGCGG+AGG | 0.563948 | 8.1:+20079596 | None:intergenic |
| ATGCATCTTTGTTTGAGTTG+CGG | 0.567744 | 8.1:+20079805 | None:intergenic |
| GGGTGAAGGGAGGCTGCTGG+AGG | 0.568462 | 8.1:-20079193 | MS.gene059967:CDS |
| TTTCGCTTTCGTCCATGAAG+CGG | 0.570395 | 8.1:+20079593 | None:intergenic |
| AAAGCGGTTACGGCGGTGGA+AGG | 0.571422 | 8.1:+20080006 | None:intergenic |
| GCATCAAAGGTCTTGTTCAA+CGG | 0.574251 | 8.1:-20079786 | MS.gene059967:CDS |
| CAAATACGGAATCCACCTGT+TGG | 0.576636 | 8.1:-20079851 | MS.gene059967:CDS |
| AAGGAAGGTTGCCTCAGCTA+AGG | 0.578016 | 8.1:-20077369 | MS.gene059967:CDS |
| CCAAATGGAAACTACTAGCA+AGG | 0.585999 | 8.1:-20077388 | MS.gene059967:CDS |
| GGGTAAGACCTCCATTGGTG+TGG | 0.587022 | 8.1:+20080278 | None:intergenic |
| TTGGAGCATATATGTACGGA+AGG | 0.591498 | 8.1:-20079335 | MS.gene059967:CDS |
| AGGATATCAAGTTCAAGCAC+AGG | 0.591612 | 8.1:+20079616 | None:intergenic |
| GGAAGCATAGAGAGGAGCAA+GGG | 0.591806 | 8.1:-20079391 | MS.gene059967:CDS |
| ATACAACGGATACGGAGATC+CGG | 0.598941 | 8.1:+20079709 | None:intergenic |
| GCAAATTCTCCACCTGTCAA+GGG | 0.602836 | 8.1:-20079256 | MS.gene059967:CDS |
| GTTGTATGCGGAACTTTCTG+AGG | 0.605270 | 8.1:-20079369 | MS.gene059967:CDS |
| GTAGCTTCATACAACGGATA+CGG | 0.605346 | 8.1:+20079701 | None:intergenic |
| GAATACCCAAACCACACCAA+TGG | 0.607266 | 8.1:-20080289 | MS.gene059967:CDS |
| TCGGAGCTGCGTTGTTTACG+CGG | 0.613669 | 8.1:+20080054 | None:intergenic |
| AAGCTGAAGCCCTTGACAGG+TGG | 0.613763 | 8.1:+20079247 | None:intergenic |
| AGGAAGCATAGAGAGGAGCA+AGG | 0.616562 | 8.1:-20079392 | MS.gene059967:CDS |
| TAAACAACTAACCTGCAAAG+AGG | 0.620623 | 8.1:+20079098 | None:intergenic |
| CAGGTGGAGAATTTGCTACA+CGG | 0.624063 | 8.1:+20079263 | None:intergenic |
| CGTTGGACCATACCATGTTG+AGG | 0.625619 | 8.1:-20079303 | MS.gene059967:CDS |
| TACCCAAACCACACCAATGG+AGG | 0.626720 | 8.1:-20080286 | MS.gene059967:CDS |
| CTACAAACCTGGATGAGTAG+AGG | 0.636623 | 8.1:+20079974 | None:intergenic |
| ATATTGTAACAATAATGTCT+CGG | 0.638704 | 8.1:-20077252 | MS.gene059967:CDS |
| GCTGGAGGTGCAAACGTATG+TGG | 0.643612 | 8.1:-20079178 | MS.gene059967:CDS |
| TTTCTTTATTAACCTCAACA+TGG | 0.646312 | 8.1:+20079291 | None:intergenic |
| GAAATCGAGGAAGCATAGAG+AGG | 0.652687 | 8.1:-20079399 | MS.gene059967:CDS |
| GCACAGGATCATGTTTGGTG+AGG | 0.659496 | 8.1:+20079632 | None:intergenic |
| GAGTGACCATAGACAATCGT+GGG | 0.660262 | 8.1:-20077298 | MS.gene059967:CDS |
| GCCGATGAAAGCGGTTACGG+CGG | 0.661788 | 8.1:+20079999 | None:intergenic |
| TGCAAGAAGAGGGTGAAGGG+AGG | 0.663791 | 8.1:-20079203 | MS.gene059967:CDS |
| ACGGAAGGGTGCACCGACGT+TGG | 0.666831 | 8.1:-20079320 | MS.gene059967:CDS |
| CGTGAGATAGTGCCAACAGG+TGG | 0.667055 | 8.1:+20079839 | None:intergenic |
| GGAAAACATAACCTTAGCTG+AGG | 0.673989 | 8.1:+20077358 | None:intergenic |
| GTAGAGGTAGCCGATGAAAG+CGG | 0.674697 | 8.1:+20079990 | None:intergenic |
| AACATGCAAGAAGAGGGTGA+AGG | 0.677915 | 8.1:-20079207 | MS.gene059967:CDS |
| TGGAGCATATATGTACGGAA+GGG | 0.681205 | 8.1:-20079334 | MS.gene059967:CDS |
| AGAGGAGCAAGGGTTGTATG+CGG | 0.686478 | 8.1:-20079381 | MS.gene059967:CDS |
| TGGTGAGTAGCTTCATACAA+CGG | 0.689964 | 8.1:+20079695 | None:intergenic |
| ACTAACCAGGATGCTTGTGT+GGG | 0.692654 | 8.1:+20080209 | None:intergenic |
| CTCGAAAACAGGAGATACCG+AGG | 0.700797 | 8.1:+20080092 | None:intergenic |
| AGAGTGACCATAGACAATCG+TGG | 0.708473 | 8.1:-20077299 | MS.gene059967:CDS |
| ACGGTTAACATCAGAAAACG+TGG | 0.721632 | 8.1:-20079767 | MS.gene059967:CDS |
| AACATGGTATGGTCCAACGT+CGG | 0.721753 | 8.1:+20079307 | None:intergenic |
| GTTAACATCAGAAAACGTGG+TGG | 0.747454 | 8.1:-20079764 | MS.gene059967:CDS |
| ACTCACCAATCACTTCAACG+CGG | 0.835800 | 8.1:-20079680 | MS.gene059967:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACAATATACAATAAATTAA+CGG | + | chr8.1:20079430-20079449 | None:intergenic | 10.0% |
| !! | TATATTGTATATTTGTATAT+GGG | - | chr8.1:20079441-20079460 | MS.gene059967:intron | 10.0% |
| !!! | AAATAATTAAGCTATTTTTT+TGG | - | chr8.1:20080061-20080080 | MS.gene059967:CDS | 10.0% |
| !!! | AGATATTTATTAATTTTGAT+GGG | + | chr8.1:20079924-20079943 | None:intergenic | 10.0% |
| !!! | TAGATATTTATTAATTTTGA+TGG | + | chr8.1:20079925-20079944 | None:intergenic | 10.0% |
| !! | ATAATCATGGAATTAATTAA+AGG | - | chr8.1:20078569-20078588 | MS.gene059967:intron | 15.0% |
| !! | ATATTGTATATTTGTATATG+GGG | - | chr8.1:20079442-20079461 | MS.gene059967:intron | 15.0% |
| !! | GTATATTGTATATTTGTATA+TGG | - | chr8.1:20079440-20079459 | MS.gene059967:intron | 15.0% |
| !! | TAATCATGGAATTAATTAAA+GGG | - | chr8.1:20078570-20078589 | MS.gene059967:intron | 15.0% |
| !! | TTAAAAAAAATACGAACAAT+TGG | + | chr8.1:20077349-20077368 | None:intergenic | 15.0% |
| !!! | AATTTCATTTTTGTTTAGAT+GGG | - | chr8.1:20079161-20079180 | MS.gene059967:CDS | 15.0% |
| !!! | ACTTATTTTATATTTGAGAT+TGG | - | chr8.1:20078930-20078949 | MS.gene059967:intron | 15.0% |
| !! | ATATTGTAACAATAATGTCT+CGG | - | chr8.1:20080274-20080293 | MS.gene059967:CDS | 20.0% |
| !! | GTTGTAAATCAATAATTAAC+AGG | - | chr8.1:20077411-20077430 | MS.gene059967:CDS | 20.0% |
| !! | TGATTATTATTGTGTTATAG+AGG | - | chr8.1:20078099-20078118 | MS.gene059967:intron | 20.0% |
| !! | TTATTTCGGTCATAAATATA+AGG | - | chr8.1:20078848-20078867 | MS.gene059967:intron | 20.0% |
| !!! | CAATTTCATTTTTGTTTAGA+TGG | - | chr8.1:20079160-20079179 | MS.gene059967:CDS | 20.0% |
| !!! | CTAATTTTATAGAGATGAAT+CGG | - | chr8.1:20079771-20079790 | MS.gene059967:CDS | 20.0% |
| !!! | TAAGTCTCTTGATATTTTTA+GGG | - | chr8.1:20079535-20079554 | MS.gene059967:intron | 20.0% |
| !!! | TATTTTATATTTGAGATTGG+AGG | - | chr8.1:20078933-20078952 | MS.gene059967:intron | 20.0% |
| !!! | TGTTCGTATTTTTTTTAACT+CGG | - | chr8.1:20077351-20077370 | MS.gene059967:CDS | 20.0% |
| ! | AAAGCTGATGTATTTGATTA+AGG | - | chr8.1:20078885-20078904 | MS.gene059967:intron | 25.0% |
| ! | AAGGTAGCTAATAATAACTT+GGG | + | chr8.1:20079841-20079860 | None:intergenic | 25.0% |
| ! | AGAATAGTACATCATAATCA+TGG | - | chr8.1:20078556-20078575 | MS.gene059967:intron | 25.0% |
| ! | GAAAGAATAATCCAAATTCA+CGG | - | chr8.1:20077493-20077512 | MS.gene059967:intron | 25.0% |
| ! | GTGAATAAAGACATCATATT+CGG | + | chr8.1:20077272-20077291 | None:intergenic | 25.0% |
| ! | GTGAATTTGGATTATTCTTT+CGG | + | chr8.1:20077494-20077513 | None:intergenic | 25.0% |
| ! | TGAACATTGCAATATTTGAT+TGG | + | chr8.1:20079469-20079488 | None:intergenic | 25.0% |
| ! | TGAATAAAGACATCATATTC+GGG | + | chr8.1:20077271-20077290 | None:intergenic | 25.0% |
| ! | TTTCTTTATTAACCTCAACA+TGG | + | chr8.1:20078238-20078257 | None:intergenic | 25.0% |
| !! | AGCTCTAACAAAAGATTATA+AGG | + | chr8.1:20078512-20078531 | None:intergenic | 25.0% |
| !! | CTAAGTCTCTTGATATTTTT+AGG | - | chr8.1:20079534-20079553 | MS.gene059967:intron | 25.0% |
| !!! | AGAAACTATTTTGACCAAAA+TGG | + | chr8.1:20079218-20079237 | None:intergenic | 25.0% |
| !!! | GTTGTTGCGATTTTTTATTT+CGG | - | chr8.1:20078834-20078853 | MS.gene059967:intron | 25.0% |
| !!! | TTTTGTTTAGATGGGTAAAA+TGG | - | chr8.1:20079169-20079188 | MS.gene059967:CDS | 25.0% |
| AAATATCAAGAGACTTAGCT+AGG | + | chr8.1:20079532-20079551 | None:intergenic | 30.0% | |
| AAATCGCAACAACATTTGTA+TGG | + | chr8.1:20078827-20078846 | None:intergenic | 30.0% | |
| AATATCAAGAGACTTAGCTA+GGG | + | chr8.1:20079531-20079550 | None:intergenic | 30.0% | |
| AATCAATAATTAACAGGCCT+CGG | - | chr8.1:20077417-20077436 | MS.gene059967:CDS | 30.0% | |
| AATCGCAACAACATTTGTAT+GGG | + | chr8.1:20078826-20078845 | None:intergenic | 30.0% | |
| AGAAAACAAACACAGAAACA+TGG | + | chr8.1:20079976-20079995 | None:intergenic | 30.0% | |
| ATAATCCTTAGTCCTTGAAT+CGG | + | chr8.1:20077380-20077399 | None:intergenic | 30.0% | |
| ATATACAAGTACTACAAACC+TGG | + | chr8.1:20077566-20077585 | None:intergenic | 30.0% | |
| ATATATTGCTACCTGATCAA+CGG | + | chr8.1:20079378-20079397 | None:intergenic | 30.0% | |
| ATTATTAGCTACCTTCAACT+TGG | - | chr8.1:20079846-20079865 | MS.gene059967:CDS | 30.0% | |
| CAGACAATTTCAATTGAGAA+TGG | - | chr8.1:20080091-20080110 | MS.gene059967:CDS | 30.0% | |
| GAAAACAAACACAGAAACAT+GGG | + | chr8.1:20079975-20079994 | None:intergenic | 30.0% | |
| GAAGGTAGCTAATAATAACT+TGG | + | chr8.1:20079842-20079861 | None:intergenic | 30.0% | |
| GATCGATTGATACTCTTAAA+CGG | - | chr8.1:20078969-20078988 | MS.gene059967:intron | 30.0% | |
| TCAATAATGTTCTCGAAAAC+AGG | + | chr8.1:20077448-20077467 | None:intergenic | 30.0% | |
| TTAGAGAGTTATTGCCTTAT+TGG | - | chr8.1:20078758-20078777 | MS.gene059967:intron | 30.0% | |
| TTATTAACCTCAACATGGTA+TGG | + | chr8.1:20078233-20078252 | None:intergenic | 30.0% | |
| TTATTAGCTACCTTCAACTT+GGG | - | chr8.1:20079847-20079866 | MS.gene059967:CDS | 30.0% | |
| ! | CTTCATCTCTTTTTCTCTTA+GGG | + | chr8.1:20080202-20080221 | None:intergenic | 30.0% |
| ! | TAATTATTGACTACGATCGA+TGG | + | chr8.1:20079592-20079611 | None:intergenic | 30.0% |
| ! | TCTTCATCTCTTTTTCTCTT+AGG | + | chr8.1:20080203-20080222 | None:intergenic | 30.0% |
| !!! | CTCTTGATATTTTTAGGGAT+TGG | - | chr8.1:20079540-20079559 | MS.gene059967:intron | 30.0% |
| AAAAATAGAGCCAATGGTGA+TGG | - | chr8.1:20078662-20078681 | MS.gene059967:intron | 35.0% | |
| AAAGGAAAGATGATCCCAAA+TGG | - | chr8.1:20080123-20080142 | MS.gene059967:intron | 35.0% | |
| AGTTATGTCGATGACTATGA+TGG | - | chr8.1:20078735-20078754 | MS.gene059967:intron | 35.0% | |
| CAAAGTTGTTTATGCGTAAC+TGG | - | chr8.1:20078014-20078033 | MS.gene059967:intron | 35.0% | |
| CACATACTTTGGTTGTTACA+CGG | + | chr8.1:20079642-20079661 | None:intergenic | 35.0% | |
| CACTAATTGACAGACATGTT+TGG | + | chr8.1:20079895-20079914 | None:intergenic | 35.0% | |
| CATGTCTGTCAATTAGTGAA+AGG | - | chr8.1:20079897-20079916 | MS.gene059967:intron | 35.0% | |
| CTCAAACAAAGATGCATCAA+AGG | - | chr8.1:20077727-20077746 | MS.gene059967:intron | 35.0% | |
| CTTGCTAGTAGTTTCCATTT+GGG | + | chr8.1:20080140-20080159 | None:intergenic | 35.0% | |
| GAGGATGAAATGGACAAATA+CGG | - | chr8.1:20077661-20077680 | MS.gene059967:intron | 35.0% | |
| GATGGTTATTTAGACATGGT+CGG | - | chr8.1:20078680-20078699 | MS.gene059967:intron | 35.0% | |
| GTCTAAATAACCATCACCAT+TGG | + | chr8.1:20078675-20078694 | None:intergenic | 35.0% | |
| GTCTTTATTCACACTTCTGA+TGG | - | chr8.1:20077280-20077299 | MS.gene059967:CDS | 35.0% | |
| TAAACAACTAACCTGCAAAG+AGG | + | chr8.1:20078431-20078450 | None:intergenic | 35.0% | |
| TATGCTAGCTAAGTTGCATT+AGG | + | chr8.1:20078463-20078482 | None:intergenic | 35.0% | |
| TGCAAGAATCATCAGTTTGT+TGG | + | chr8.1:20078403-20078422 | None:intergenic | 35.0% | |
| TTATGCGTAACTGGTATCTA+TGG | - | chr8.1:20078023-20078042 | MS.gene059967:intron | 35.0% | |
| ! | ATTTTGCAACATGCAAGAAG+AGG | - | chr8.1:20078312-20078331 | MS.gene059967:intron | 35.0% |
| ! | GTGTTTGGAGCATATATGTA+CGG | - | chr8.1:20078187-20078206 | MS.gene059967:intron | 35.0% |
| ! | TTGATCTTTTCCACTGATGT+TGG | + | chr8.1:20079680-20079699 | None:intergenic | 35.0% |
| ! | TTTTGCAACATGCAAGAAGA+GGG | - | chr8.1:20078313-20078332 | MS.gene059967:intron | 35.0% |
| !! | ATGCATCTTTGTTTGAGTTG+CGG | + | chr8.1:20077724-20077743 | None:intergenic | 35.0% |
| !! | CTTATTGGTGATGATAGTGT+GGG | - | chr8.1:20078773-20078792 | MS.gene059967:intron | 35.0% |
| !! | TGGTGATGGTTATTTAGACA+TGG | - | chr8.1:20078676-20078695 | MS.gene059967:intron | 35.0% |
| !! | TTAAAGGGTGTTAGTAGTTG+CGG | - | chr8.1:20078585-20078604 | MS.gene059967:intron | 35.0% |
| !!! | GGCGAGTTTTTTTTCTTTCT+TGG | - | chr8.1:20078701-20078720 | MS.gene059967:intron | 35.0% |
| AACGCGGTTCAAAAAACTGA+AGG | - | chr8.1:20077862-20077881 | MS.gene059967:intron | 40.0% | |
| AACGGCATCAAAATACAAGC+TGG | + | chr8.1:20079566-20079585 | None:intergenic | 40.0% | |
| ACGCGGTTCAAAAAACTGAA+GGG | - | chr8.1:20077863-20077882 | MS.gene059967:intron | 40.0% | |
| ACGGTTAACATCAGAAAACG+TGG | - | chr8.1:20077759-20077778 | MS.gene059967:intron | 40.0% | |
| AGGATATCAAGTTCAAGCAC+AGG | + | chr8.1:20077913-20077932 | None:intergenic | 40.0% | |
| ATAAAGTCTCACCGTTGATC+AGG | - | chr8.1:20079364-20079383 | MS.gene059967:CDS | 40.0% | |
| ATGGAAACTACTAGCAAGGA+AGG | - | chr8.1:20080142-20080161 | MS.gene059967:intron | 40.0% | |
| ATGGACATGACCACATACTT+TGG | + | chr8.1:20079653-20079672 | None:intergenic | 40.0% | |
| ATTGACAGACATGTTTGGCA+TGG | + | chr8.1:20079890-20079909 | None:intergenic | 40.0% | |
| CAATTGGAGACAAACTAACC+AGG | + | chr8.1:20077333-20077352 | None:intergenic | 40.0% | |
| CCAAATGGAAACTACTAGCA+AGG | - | chr8.1:20080138-20080157 | MS.gene059967:intron | 40.0% | |
| CCACACTATCATCACCAATA+AGG | + | chr8.1:20078775-20078794 | None:intergenic | 40.0% | |
| CCTTGCTAGTAGTTTCCATT+TGG | + | chr8.1:20080141-20080160 | None:intergenic | 40.0% | |
| CGTGTAACAACCAAAGTATG+TGG | - | chr8.1:20079640-20079659 | MS.gene059967:CDS | 40.0% | |
| GCTGTGAATGAAAAATGACC+TGG | - | chr8.1:20077621-20077640 | MS.gene059967:intron | 40.0% | |
| GGAAAACATAACCTTAGCTG+AGG | + | chr8.1:20080171-20080190 | None:intergenic | 40.0% | |
| GTAGCTTCATACAACGGATA+CGG | + | chr8.1:20077828-20077847 | None:intergenic | 40.0% | |
| GTCGATGAGTGATAAAACGT+GGG | - | chr8.1:20078639-20078658 | MS.gene059967:intron | 40.0% | |
| GTTAACATCAGAAAACGTGG+TGG | - | chr8.1:20077762-20077781 | MS.gene059967:intron | 40.0% | |
| TAGCTAAGTTGCATTAGGCA+TGG | + | chr8.1:20078458-20078477 | None:intergenic | 40.0% | |
| TATAGAGGAGAGAGAAATCG+AGG | - | chr8.1:20078114-20078133 | MS.gene059967:intron | 40.0% | |
| TGAGAATGGAGCAAGAGAAA+AGG | - | chr8.1:20080105-20080124 | MS.gene059967:intron | 40.0% | |
| TGGAGCATATATGTACGGAA+GGG | - | chr8.1:20078192-20078211 | MS.gene059967:intron | 40.0% | |
| TGGTGAGTAGCTTCATACAA+CGG | + | chr8.1:20077834-20077853 | None:intergenic | 40.0% | |
| TGTCGATGAGTGATAAAACG+TGG | - | chr8.1:20078638-20078657 | MS.gene059967:intron | 40.0% | |
| TTAACTCGGTATCCGATTCA+AGG | - | chr8.1:20077365-20077384 | MS.gene059967:CDS | 40.0% | |
| TTCAAACACGCAATTGTGTG+TGG | - | chr8.1:20079485-20079504 | MS.gene059967:intron | 40.0% | |
| TTCAAGCACAGGATCATGTT+TGG | + | chr8.1:20077902-20077921 | None:intergenic | 40.0% | |
| TTGGAGCATATATGTACGGA+AGG | - | chr8.1:20078191-20078210 | MS.gene059967:intron | 40.0% | |
| TTTGGTTGTTACACGGTAGT+GGG | + | chr8.1:20079635-20079654 | None:intergenic | 40.0% | |
| ! | AATCGTGGGATCAGATGTTT+TGG | - | chr8.1:20080242-20080261 | MS.gene059967:CDS | 40.0% |
| ! | TTTTCTCTTAGGGAGAGACA+AGG | + | chr8.1:20080192-20080211 | None:intergenic | 40.0% |
| !! | CCTTATTGGTGATGATAGTG+TGG | - | chr8.1:20078772-20078791 | MS.gene059967:intron | 40.0% |
| !! | GCATCAAAGGTCTTGTTCAA+CGG | - | chr8.1:20077740-20077759 | MS.gene059967:intron | 40.0% |
| !!! | AGCTTGTATTTTGATGCCGT+TGG | - | chr8.1:20079565-20079584 | MS.gene059967:intron | 40.0% |
| !!! | CCTGGTTTTTTACAGTTGCA+CGG | - | chr8.1:20077639-20077658 | MS.gene059967:intron | 40.0% |
| !!! | GTCATTTTTCATTCACAGCG+CGG | + | chr8.1:20077620-20077639 | None:intergenic | 40.0% |
| AACATGCAAGAAGAGGGTGA+AGG | - | chr8.1:20078319-20078338 | MS.gene059967:intron | 45.0% | |
| AACATGGTATGGTCCAACGT+CGG | + | chr8.1:20078222-20078241 | None:intergenic | 45.0% | |
| AACTAACCAGGATGCTTGTG+TGG | + | chr8.1:20077321-20077340 | None:intergenic | 45.0% | |
| ACATGCAAGAAGAGGGTGAA+GGG | - | chr8.1:20078320-20078339 | MS.gene059967:intron | 45.0% | |
| ACTAACCAGGATGCTTGTGT+GGG | + | chr8.1:20077320-20077339 | None:intergenic | 45.0% | |
| ACTCACCAATCACTTCAACG+CGG | - | chr8.1:20077846-20077865 | MS.gene059967:intron | 45.0% | |
| ACTTGATATCCTCCGCTTCA+TGG | - | chr8.1:20077921-20077940 | MS.gene059967:intron | 45.0% | |
| AGAGTGACCATAGACAATCG+TGG | - | chr8.1:20080227-20080246 | MS.gene059967:CDS | 45.0% | |
| AGCAAATTCTCCACCTGTCA+AGG | - | chr8.1:20078269-20078288 | MS.gene059967:intron | 45.0% | |
| ATACAACGGATACGGAGATC+CGG | + | chr8.1:20077820-20077839 | None:intergenic | 45.0% | |
| CAAATACGGAATCCACCTGT+TGG | - | chr8.1:20077675-20077694 | MS.gene059967:intron | 45.0% | |
| CCGTGCAACTGTAAAAAACC+AGG | + | chr8.1:20077642-20077661 | None:intergenic | 45.0% | |
| CGGTTCAAAAAACTGAAGGG+TGG | - | chr8.1:20077866-20077885 | MS.gene059967:intron | 45.0% | |
| CGTGGGAAAAATAGAGCCAA+TGG | - | chr8.1:20078656-20078675 | MS.gene059967:intron | 45.0% | |
| CTACAAACCTGGATGAGTAG+AGG | + | chr8.1:20077555-20077574 | None:intergenic | 45.0% | |
| CTTGCAATGTTCCTCTTTGC+AGG | - | chr8.1:20078417-20078436 | MS.gene059967:intron | 45.0% | |
| CTTTGGTTGTTACACGGTAG+TGG | + | chr8.1:20079636-20079655 | None:intergenic | 45.0% | |
| GAATACCCAAACCACACCAA+TGG | - | chr8.1:20077237-20077256 | MS.gene059967:CDS | 45.0% | |
| GAGTGACCATAGACAATCGT+GGG | - | chr8.1:20080228-20080247 | MS.gene059967:CDS | 45.0% | |
| GCAAATTCTCCACCTGTCAA+GGG | - | chr8.1:20078270-20078289 | MS.gene059967:intron | 45.0% | |
| GGTATCCGATTCAAGGACTA+AGG | - | chr8.1:20077372-20077391 | MS.gene059967:CDS | 45.0% | |
| GTTGTATGCGGAACTTTCTG+AGG | - | chr8.1:20078157-20078176 | MS.gene059967:intron | 45.0% | |
| TACCTTCAACTTGGGAAGCA+TGG | - | chr8.1:20079855-20079874 | MS.gene059967:CDS | 45.0% | |
| TATTCGGGTAAGACCTCCAT+TGG | + | chr8.1:20077256-20077275 | None:intergenic | 45.0% | |
| TCTGATCCCACGATTGTCTA+TGG | + | chr8.1:20080237-20080256 | None:intergenic | 45.0% | |
| TTGAACCGCGTTGAAGTGAT+TGG | + | chr8.1:20077854-20077873 | None:intergenic | 45.0% | |
| TTTCGCTTTCGTCCATGAAG+CGG | + | chr8.1:20077936-20077955 | None:intergenic | 45.0% | |
| ! | AACCATGCTTCCCAAGTTGA+AGG | + | chr8.1:20079860-20079879 | None:intergenic | 45.0% |
| ! | GAAATCGAGGAAGCATAGAG+AGG | - | chr8.1:20078127-20078146 | MS.gene059967:intron | 45.0% |
| !! | ATTGGTGATGATAGTGTGGG+TGG | - | chr8.1:20078776-20078795 | MS.gene059967:intron | 45.0% |
| !! | CAGGTGGAGAATTTGCTACA+CGG | + | chr8.1:20078266-20078285 | None:intergenic | 45.0% |
| !! | TTCCACTGATGTTGGTGTCA+TGG | + | chr8.1:20079672-20079691 | None:intergenic | 45.0% |
| !!! | GGTTTTTTACAGTTGCACGG+AGG | - | chr8.1:20077642-20077661 | MS.gene059967:intron | 45.0% |
| AAGGAAGGTTGCCTCAGCTA+AGG | - | chr8.1:20080157-20080176 | MS.gene059967:intron | 50.0% | |
| AATGGATGCCGTGAGTGTGT+TGG | + | chr8.1:20079200-20079219 | None:intergenic | 50.0% | |
| ACACGTGAGATAGTGCCAAC+AGG | + | chr8.1:20077693-20077712 | None:intergenic | 50.0% | |
| AGACCTCCATTGGTGTGGTT+TGG | + | chr8.1:20077246-20077265 | None:intergenic | 50.0% | |
| AGAGGAGCAAGGGTTGTATG+CGG | - | chr8.1:20078145-20078164 | MS.gene059967:intron | 50.0% | |
| CAGTTGCACGGAGGATGAAA+TGG | - | chr8.1:20077651-20077670 | MS.gene059967:intron | 50.0% | |
| CGTTGGACCATACCATGTTG+AGG | - | chr8.1:20078223-20078242 | MS.gene059967:intron | 50.0% | |
| CTCGAAAACAGGAGATACCG+AGG | + | chr8.1:20077437-20077456 | None:intergenic | 50.0% | |
| GACCTCCATTGGTGTGGTTT+GGG | + | chr8.1:20077245-20077264 | None:intergenic | 50.0% | |
| GACTACGATCGATGGACCAA+CGG | + | chr8.1:20079584-20079603 | None:intergenic | 50.0% | |
| GTAGAGGTAGCCGATGAAAG+CGG | + | chr8.1:20077539-20077558 | None:intergenic | 50.0% | |
| GTAGCCGATGAAAGCGGTTA+CGG | + | chr8.1:20077533-20077552 | None:intergenic | 50.0% | |
| GTCCATGACACCAACATCAG+TGG | - | chr8.1:20079667-20079686 | MS.gene059967:CDS | 50.0% | |
| TACCCAAACCACACCAATGG+AGG | - | chr8.1:20077240-20077259 | MS.gene059967:CDS | 50.0% | |
| TGGAAGGAACGCCGTGAATT+TGG | + | chr8.1:20077507-20077526 | None:intergenic | 50.0% | |
| TGGTCACACCAACACACTCA+CGG | - | chr8.1:20079189-20079208 | MS.gene059967:CDS | 50.0% | |
| ! | AGGAAGCATAGAGAGGAGCA+AGG | - | chr8.1:20078134-20078153 | MS.gene059967:intron | 50.0% |
| ! | ATGATAGTGTGGGTGGTGGT+CGG | - | chr8.1:20078783-20078802 | MS.gene059967:intron | 50.0% |
| ! | CACACTCACGGCATCCATTT+TGG | - | chr8.1:20079201-20079220 | MS.gene059967:CDS | 50.0% |
| ! | GCACAGGATCATGTTTGGTG+AGG | + | chr8.1:20077897-20077916 | None:intergenic | 50.0% |
| ! | GGAAGCATAGAGAGGAGCAA+GGG | - | chr8.1:20078135-20078154 | MS.gene059967:intron | 50.0% |
| !! | TTCTGAGGCGATGGAGTGTT+TGG | - | chr8.1:20078172-20078191 | MS.gene059967:intron | 50.0% |
| AAGCTGAAGCCCTTGACAGG+TGG | + | chr8.1:20078282-20078301 | None:intergenic | 55.0% | |
| ACCGCCGTAACCGCTTTCAT+CGG | - | chr8.1:20077526-20077545 | MS.gene059967:intron | 55.0% | |
| CAGAAGCTGAAGCCCTTGAC+AGG | + | chr8.1:20078285-20078304 | None:intergenic | 55.0% | |
| CGTGAGATAGTGCCAACAGG+TGG | + | chr8.1:20077690-20077709 | None:intergenic | 55.0% | |
| GGGTAAGACCTCCATTGGTG+TGG | + | chr8.1:20077251-20077270 | None:intergenic | 55.0% | |
| TCGGAGCTGCGTTGTTTACG+CGG | + | chr8.1:20077475-20077494 | None:intergenic | 55.0% | |
| TCGGCTACCTCTACTCATCC+AGG | - | chr8.1:20077545-20077564 | MS.gene059967:intron | 55.0% | |
| TGCAAGAAGAGGGTGAAGGG+AGG | - | chr8.1:20078323-20078342 | MS.gene059967:intron | 55.0% | |
| TGGATGTACTCCAACTCGCC+AGG | - | chr8.1:20077782-20077801 | MS.gene059967:intron | 55.0% | |
| ! | GCTGGAGGTGCAAACGTATG+TGG | - | chr8.1:20078348-20078367 | MS.gene059967:intron | 55.0% |
| ! | GGTGATGATAGTGTGGGTGG+TGG | - | chr8.1:20078779-20078798 | MS.gene059967:intron | 55.0% |
| !! | TGCGGAACTTTCTGAGGCGA+TGG | - | chr8.1:20078163-20078182 | MS.gene059967:intron | 55.0% |
| AAAGCGGTTACGGCGGTGGA+AGG | + | chr8.1:20077523-20077542 | None:intergenic | 60.0% | |
| ACCAGGATGCTTGTGTGGGC+TGG | + | chr8.1:20077316-20077335 | None:intergenic | 60.0% | |
| CGCTTTCGTCCATGAAGCGG+AGG | + | chr8.1:20077933-20077952 | None:intergenic | 60.0% | |
| GATGAAAGCGGTTACGGCGG+TGG | + | chr8.1:20077527-20077546 | None:intergenic | 60.0% | |
| GCCGATGAAAGCGGTTACGG+CGG | + | chr8.1:20077530-20077549 | None:intergenic | 60.0% | |
| TCCAGCCCACACAAGCATCC+TGG | - | chr8.1:20077312-20077331 | MS.gene059967:CDS | 60.0% | |
| AGAGGGTGAAGGGAGGCTGC+TGG | - | chr8.1:20078330-20078349 | MS.gene059967:intron | 65.0% | |
| ATCCGGTGCATCGCAGAGCC+TGG | + | chr8.1:20077803-20077822 | None:intergenic | 65.0% | |
| CATCGCAGAGCCTGGCGAGT+TGG | + | chr8.1:20077795-20077814 | None:intergenic | 65.0% | |
| ! | ACGGAAGGGTGCACCGACGT+TGG | - | chr8.1:20078206-20078225 | MS.gene059967:intron | 65.0% |
| CGCCAGGCTCTGCGATGCAC+CGG | - | chr8.1:20077798-20077817 | MS.gene059967:intron | 70.0% | |
| GGGTGAAGGGAGGCTGCTGG+AGG | - | chr8.1:20078333-20078352 | MS.gene059967:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 20077229 | 20080319 | 20077229 | ID=MS.gene059967 |
| chr8.1 | mRNA | 20077229 | 20080319 | 20077229 | ID=MS.gene059967.t1;Parent=MS.gene059967 |
| chr8.1 | exon | 20080215 | 20080319 | 20080215 | ID=MS.gene059967.t1.exon1;Parent=MS.gene059967.t1 |
| chr8.1 | CDS | 20080215 | 20080319 | 20080215 | ID=cds.MS.gene059967.t1;Parent=MS.gene059967.t1 |
| chr8.1 | exon | 20079982 | 20080115 | 20079982 | ID=MS.gene059967.t1.exon2;Parent=MS.gene059967.t1 |
| chr8.1 | CDS | 20079982 | 20080115 | 20079982 | ID=cds.MS.gene059967.t1;Parent=MS.gene059967.t1 |
| chr8.1 | exon | 20079591 | 20079894 | 20079591 | ID=MS.gene059967.t1.exon3;Parent=MS.gene059967.t1 |
| chr8.1 | CDS | 20079591 | 20079894 | 20079591 | ID=cds.MS.gene059967.t1;Parent=MS.gene059967.t1 |
| chr8.1 | exon | 20079110 | 20079429 | 20079110 | ID=MS.gene059967.t1.exon4;Parent=MS.gene059967.t1 |
| chr8.1 | CDS | 20079110 | 20079429 | 20079110 | ID=cds.MS.gene059967.t1;Parent=MS.gene059967.t1 |
| chr8.1 | exon | 20077229 | 20077454 | 20077229 | ID=MS.gene059967.t1.exon5;Parent=MS.gene059967.t1 |
| chr8.1 | CDS | 20077229 | 20077454 | 20077229 | ID=cds.MS.gene059967.t1;Parent=MS.gene059967.t1 |
| Gene Sequence |
| Protein sequence |
