Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48295.t1 | XP_003608891.1 | 97 | 363 | 10 | 1 | 1 | 363 | 1 | 362 | 6.40E-195 | 689.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48295.t1 | Q94BN0 | 57.0 | 330 | 129 | 6 | 15 | 332 | 32 | 360 | 3.8e-95 | 349.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48295.t1 | G7JMM8 | 97.0 | 363 | 10 | 1 | 1 | 363 | 1 | 362 | 4.6e-195 | 689.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene48295.t1 | TR | TAZ |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059967 | MS.gene48295 | 0.98998 | 1.64E-180 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48295.t1 | MTR_4g104140 | 97.796 | 363 | 7 | 1 | 1 | 363 | 1 | 362 | 0.0 | 744 |
| MS.gene48295.t1 | MTR_4g104140 | 98.587 | 283 | 4 | 0 | 81 | 363 | 10 | 292 | 0.0 | 586 |
| MS.gene48295.t1 | MTR_3g075270 | 53.929 | 280 | 126 | 2 | 55 | 334 | 3 | 279 | 1.15e-111 | 328 |
| MS.gene48295.t1 | MTR_5g015680 | 45.973 | 298 | 154 | 7 | 18 | 313 | 68 | 360 | 1.98e-84 | 261 |
| MS.gene48295.t1 | MTR_5g015680 | 46.309 | 298 | 153 | 7 | 18 | 313 | 107 | 399 | 7.56e-84 | 261 |
| MS.gene48295.t1 | MTR_5g015680 | 47.328 | 262 | 132 | 6 | 58 | 317 | 12 | 269 | 3.33e-76 | 236 |
| MS.gene48295.t1 | MTR_4g104170 | 83.333 | 36 | 5 | 1 | 305 | 340 | 56 | 90 | 5.98e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48295.t1 | AT3G48360 | 61.515 | 330 | 114 | 6 | 15 | 332 | 32 | 360 | 1.96e-133 | 385 |
| MS.gene48295.t1 | AT5G63160 | 62.540 | 315 | 108 | 5 | 14 | 319 | 22 | 335 | 2.54e-130 | 377 |
| MS.gene48295.t1 | AT3G48360 | 63.636 | 286 | 92 | 5 | 15 | 289 | 32 | 316 | 3.27e-120 | 351 |
| MS.gene48295.t1 | AT5G63160 | 63.732 | 284 | 94 | 4 | 14 | 289 | 22 | 304 | 3.04e-119 | 347 |
| MS.gene48295.t1 | AT5G63160 | 64.634 | 246 | 79 | 4 | 81 | 319 | 6 | 250 | 7.82e-104 | 307 |
| MS.gene48295.t1 | AT3G48360 | 62.745 | 255 | 85 | 4 | 87 | 332 | 1 | 254 | 1.53e-103 | 305 |
| MS.gene48295.t1 | AT5G67480 | 45.364 | 302 | 159 | 6 | 18 | 317 | 61 | 358 | 7.00e-83 | 257 |
| MS.gene48295.t1 | AT5G67480 | 45.364 | 302 | 159 | 6 | 18 | 317 | 61 | 358 | 7.00e-83 | 257 |
| MS.gene48295.t1 | AT5G67480 | 45.364 | 302 | 159 | 6 | 18 | 317 | 72 | 369 | 9.29e-83 | 257 |
| MS.gene48295.t1 | AT4G37610 | 42.904 | 303 | 164 | 8 | 18 | 317 | 56 | 352 | 6.64e-76 | 239 |
| MS.gene48295.t1 | AT1G05690 | 41.528 | 301 | 170 | 5 | 18 | 317 | 55 | 350 | 1.76e-74 | 235 |
| MS.gene48295.t1 | AT1G55760 | 33.835 | 133 | 79 | 4 | 18 | 147 | 165 | 291 | 6.30e-13 | 69.3 |
| MS.gene48295.t1 | AT3G56230 | 24.845 | 161 | 120 | 1 | 25 | 184 | 120 | 280 | 2.10e-12 | 67.4 |
Find 96 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAAGGAACGCCGTGAATT+TGG | 0.203367 | 8.3:+18096166 | None:intergenic |
| CTTGCAATGTTCCTCTTTGC+AGG | 0.245278 | 8.3:-18095252 | MS.gene48295:intron |
| CCTTGCTAGTAGTTTCCATT+TGG | 0.271352 | 8.3:+18093536 | None:intergenic |
| GTGAATTTGGATTATTCTTT+CGG | 0.293435 | 8.3:+18096179 | None:intergenic |
| GTGAATAAAGACATCATATT+CGG | 0.296060 | 8.3:+18096401 | None:intergenic |
| TTCTGAGGCGATGGAGTGTT+TGG | 0.329039 | 8.3:-18095497 | MS.gene48295:CDS |
| ACTTGATATCCTCCGCTTCA+TGG | 0.330110 | 8.3:-18095748 | MS.gene48295:CDS |
| GACCTCCATTGGTGTGGTTT+GGG | 0.335478 | 8.3:+18096431 | None:intergenic |
| CTTGCTAGTAGTTTCCATTT+GGG | 0.348881 | 8.3:+18093537 | None:intergenic |
| AATCGTGGGATCAGATGTTT+TGG | 0.358065 | 8.3:-18093432 | MS.gene48295:CDS |
| CGACCTCCATTGGTGTGGTT+TGG | 0.364602 | 8.3:+18096430 | None:intergenic |
| TGCAAGAATCATCAGTTTGT+TGG | 0.365276 | 8.3:+18095269 | None:intergenic |
| TCTGATCCCACGATTGTCTA+TGG | 0.399851 | 8.3:+18093440 | None:intergenic |
| TCAATAATGTTCTCGAAAAC+AGG | 0.405232 | 8.3:+18096225 | None:intergenic |
| CAGTTGCACGGAGGATGAAA+TGG | 0.408781 | 8.3:-18096018 | MS.gene48295:CDS |
| AGAGGGTGAAGGGAGGCTGC+TGG | 0.412837 | 8.3:-18095339 | MS.gene48295:CDS |
| ACCAGGATGCTTGTGTGGGC+TGG | 0.439380 | 8.3:+18096357 | None:intergenic |
| TTCAAGCACAGGATCATGTT+TGG | 0.441776 | 8.3:+18095770 | None:intergenic |
| CGCCAGGCTCTGCGATGCAC+CGG | 0.448288 | 8.3:-18095871 | MS.gene48295:CDS |
| CAGACAATTTCAATTGAGAA+TGG | 0.449145 | 8.3:-18093583 | MS.gene48295:CDS |
| TGAATAAAGACATCATATTC+GGG | 0.450560 | 8.3:+18096402 | None:intergenic |
| TTATTAACCTCAACATGGTA+TGG | 0.459852 | 8.3:+18095439 | None:intergenic |
| TTGAACCGCGTTGAAGTGAT+TGG | 0.469408 | 8.3:+18095818 | None:intergenic |
| TGAGAATGGAGCAAGAGAAA+AGG | 0.470643 | 8.3:-18093569 | MS.gene48295:CDS |
| GATGAAAGCGGTTACGGCGG+TGG | 0.476910 | 8.3:+18096146 | None:intergenic |
| GTAGCCGATGAAAGCGGTTA+CGG | 0.477754 | 8.3:+18096140 | None:intergenic |
| ATCCGGTGCATCGCAGAGCC+TGG | 0.478068 | 8.3:+18095869 | None:intergenic |
| GTCTTTATTCACACTTCTGA+TGG | 0.479577 | 8.3:-18096390 | MS.gene48295:CDS |
| AGCAAATTCTCCACCTGTCA+AGG | 0.481574 | 8.3:-18095400 | MS.gene48295:CDS |
| AAAGGAAAGATGATCCCAAA+TGG | 0.490170 | 8.3:-18093551 | MS.gene48295:CDS |
| CAGAAGCTGAAGCCCTTGAC+AGG | 0.502805 | 8.3:+18095387 | None:intergenic |
| AACTAACCAGGATGCTTGTG+TGG | 0.507204 | 8.3:+18096352 | None:intergenic |
| CATCGCAGAGCCTGGCGAGT+TGG | 0.510849 | 8.3:+18095877 | None:intergenic |
| TGCGGAACTTTCTGAGGCGA+TGG | 0.528118 | 8.3:-18095506 | MS.gene48295:CDS |
| TCGGCTACCTCTACTCATCC+AGG | 0.528548 | 8.3:-18096125 | MS.gene48295:intron |
| TATAGAGGAGAGAGAAATCG+AGG | 0.529791 | 8.3:-18095555 | MS.gene48295:intron |
| GAAAGAATAATCCAAATTCA+CGG | 0.535992 | 8.3:-18096177 | MS.gene48295:CDS |
| TCCAGCCCACACAAGCATCC+TGG | 0.542058 | 8.3:-18096358 | MS.gene48295:intron |
| CTCAAACAAAGATGCATCAA+AGG | 0.544591 | 8.3:-18095942 | MS.gene48295:CDS |
| TCGGGTAAGACGACCTCCAT+TGG | 0.548298 | 8.3:+18096420 | None:intergenic |
| GTGTTTGGAGCATATATGTA+CGG | 0.548333 | 8.3:-18095482 | MS.gene48295:CDS |
| GAGGATGAAATGGACAAATA+CGG | 0.550313 | 8.3:-18096008 | MS.gene48295:CDS |
| ACCGCCGTAACCGCTTTCAT+CGG | 0.550954 | 8.3:-18096144 | MS.gene48295:CDS |
| ACACGTGAGATAGTGCCAAC+AGG | 0.553618 | 8.3:+18095979 | None:intergenic |
| ACATGCAAGAAGAGGGTGAA+GGG | 0.559984 | 8.3:-18095349 | MS.gene48295:CDS |
| ATGGAAACTACTAGCAAGGA+AGG | 0.562140 | 8.3:-18093532 | MS.gene48295:CDS |
| TGGATGTACTCCAACTCGCC+AGG | 0.562979 | 8.3:-18095887 | MS.gene48295:CDS |
| CGCTTTCGTCCATGAAGCGG+AGG | 0.563948 | 8.3:+18095739 | None:intergenic |
| ATGCATCTTTGTTTGAGTTG+CGG | 0.567744 | 8.3:+18095948 | None:intergenic |
| GGGTGAAGGGAGGCTGCTGG+AGG | 0.568462 | 8.3:-18095336 | MS.gene48295:CDS |
| TTTCGCTTTCGTCCATGAAG+CGG | 0.570395 | 8.3:+18095736 | None:intergenic |
| AAAGCGGTTACGGCGGTGGA+AGG | 0.571422 | 8.3:+18096150 | None:intergenic |
| GCATCAAAGGTCTTGTTCAA+CGG | 0.574251 | 8.3:-18095929 | MS.gene48295:CDS |
| CAAATACGGAATCCACCTGT+TGG | 0.576636 | 8.3:-18095994 | MS.gene48295:CDS |
| AAGGAAGGTTGCCTCAGCTA+AGG | 0.578016 | 8.3:-18093517 | MS.gene48295:CDS |
| CCAAATGGAAACTACTAGCA+AGG | 0.585999 | 8.3:-18093536 | MS.gene48295:CDS |
| TTGGAGCATATATGTACGGA+AGG | 0.591498 | 8.3:-18095478 | MS.gene48295:CDS |
| AGGATATCAAGTTCAAGCAC+AGG | 0.591612 | 8.3:+18095759 | None:intergenic |
| GGAAGCATAGAGAGGAGCAA+GGG | 0.591806 | 8.3:-18095534 | MS.gene48295:CDS |
| ATACAACGGATACGGAGATC+CGG | 0.598941 | 8.3:+18095852 | None:intergenic |
| GCAAATTCTCCACCTGTCAA+GGG | 0.602836 | 8.3:-18095399 | MS.gene48295:CDS |
| GTTGTATGCGGAACTTTCTG+AGG | 0.605270 | 8.3:-18095512 | MS.gene48295:CDS |
| GTAGCTTCATACAACGGATA+CGG | 0.605346 | 8.3:+18095844 | None:intergenic |
| GAATACCCAAACCACACCAA+TGG | 0.607266 | 8.3:-18096436 | MS.gene48295:CDS |
| TCGGAGCTGCGTTGTTTACG+CGG | 0.613669 | 8.3:+18096198 | None:intergenic |
| AAGCTGAAGCCCTTGACAGG+TGG | 0.613763 | 8.3:+18095390 | None:intergenic |
| AGGAAGCATAGAGAGGAGCA+AGG | 0.616562 | 8.3:-18095535 | MS.gene48295:CDS |
| TAAACAACTAACCTGCAAAG+AGG | 0.620623 | 8.3:+18095241 | None:intergenic |
| CAGGTGGAGAATTTGCTACA+CGG | 0.624063 | 8.3:+18095406 | None:intergenic |
| CGTTGGACCATACCATGTTG+AGG | 0.625619 | 8.3:-18095446 | MS.gene48295:CDS |
| TACCCAAACCACACCAATGG+AGG | 0.626720 | 8.3:-18096433 | MS.gene48295:CDS |
| TAAGACGACCTCCATTGGTG+TGG | 0.627752 | 8.3:+18096425 | None:intergenic |
| CTACAAACCTGGATGAGTAG+AGG | 0.636623 | 8.3:+18096118 | None:intergenic |
| ATATTGTAACAATAATGTCT+CGG | 0.638704 | 8.3:-18093400 | MS.gene48295:CDS |
| GCTGGAGGTGCAAACGTATG+TGG | 0.643612 | 8.3:-18095321 | MS.gene48295:CDS |
| TTTCTTTATTAACCTCAACA+TGG | 0.646312 | 8.3:+18095434 | None:intergenic |
| GAAATCGAGGAAGCATAGAG+AGG | 0.652687 | 8.3:-18095542 | MS.gene48295:CDS |
| GCACAGGATCATGTTTGGTG+AGG | 0.659496 | 8.3:+18095775 | None:intergenic |
| GAGTGACCATAGACAATCGT+GGG | 0.660262 | 8.3:-18093446 | MS.gene48295:CDS |
| GCCGATGAAAGCGGTTACGG+CGG | 0.661788 | 8.3:+18096143 | None:intergenic |
| TGCAAGAAGAGGGTGAAGGG+AGG | 0.663791 | 8.3:-18095346 | MS.gene48295:CDS |
| ACGGAAGGGTGCACCGACGT+TGG | 0.666831 | 8.3:-18095463 | MS.gene48295:CDS |
| CGTGAGATAGTGCCAACAGG+TGG | 0.667055 | 8.3:+18095982 | None:intergenic |
| GGAAAACATAACCTTAGCTG+AGG | 0.673989 | 8.3:+18093506 | None:intergenic |
| GTAGAGGTAGCCGATGAAAG+CGG | 0.674697 | 8.3:+18096134 | None:intergenic |
| AACATGCAAGAAGAGGGTGA+AGG | 0.677915 | 8.3:-18095350 | MS.gene48295:CDS |
| TGGAGCATATATGTACGGAA+GGG | 0.681205 | 8.3:-18095477 | MS.gene48295:CDS |
| AGAGGAGCAAGGGTTGTATG+CGG | 0.686478 | 8.3:-18095524 | MS.gene48295:CDS |
| TGGTGAGTAGCTTCATACAA+CGG | 0.689964 | 8.3:+18095838 | None:intergenic |
| ACTAACCAGGATGCTTGTGT+GGG | 0.692654 | 8.3:+18096353 | None:intergenic |
| CTCGAAAACAGGAGATACCG+AGG | 0.700797 | 8.3:+18096236 | None:intergenic |
| AGAGTGACCATAGACAATCG+TGG | 0.708473 | 8.3:-18093447 | MS.gene48295:CDS |
| ACGGTTAACATCAGAAAACG+TGG | 0.721632 | 8.3:-18095910 | MS.gene48295:CDS |
| AACATGGTATGGTCCAACGT+CGG | 0.721753 | 8.3:+18095450 | None:intergenic |
| GTTAACATCAGAAAACGTGG+TGG | 0.747454 | 8.3:-18095907 | MS.gene48295:CDS |
| ACTCACCAATCACTTCAACG+CGG | 0.835800 | 8.3:-18095823 | MS.gene48295:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACAATATACAATAAATTAA+CGG | + | chr8.3:18095581-18095600 | None:intergenic | 10.0% |
| !! | TATATTGTATATTTGTATAT+GGG | - | chr8.3:18095592-18095611 | MS.gene48295:intron | 10.0% |
| !!! | AAATAATTAAGCTATTTTTT+TGG | - | chr8.3:18096208-18096227 | MS.gene48295:CDS | 10.0% |
| !!! | AGATATTTATTAATTTTGAT+GGG | + | chr8.3:18096071-18096090 | None:intergenic | 10.0% |
| !!! | TAGATATTTATTAATTTTGA+TGG | + | chr8.3:18096072-18096091 | None:intergenic | 10.0% |
| !! | ATAATCATGGAATTAATTAA+AGG | - | chr8.3:18094721-18094740 | MS.gene48295:intron | 15.0% |
| !! | ATATTGTATATTTGTATATG+GGG | - | chr8.3:18095593-18095612 | MS.gene48295:intron | 15.0% |
| !! | GTATATTGTATATTTGTATA+TGG | - | chr8.3:18095591-18095610 | MS.gene48295:intron | 15.0% |
| !! | TAATCATGGAATTAATTAAA+GGG | - | chr8.3:18094722-18094741 | MS.gene48295:intron | 15.0% |
| !! | TTAAAAAAAATACGAACAAT+TGG | + | chr8.3:18093500-18093519 | None:intergenic | 15.0% |
| !!! | AATTTCATTTTTGTTTAGAT+GGG | - | chr8.3:18095312-18095331 | MS.gene48295:CDS | 15.0% |
| !!! | ACTTATTTTATATTTGAGAT+TGG | - | chr8.3:18095081-18095100 | MS.gene48295:intron | 15.0% |
| !! | ATATTGTAACAATAATGTCT+CGG | - | chr8.3:18096421-18096440 | MS.gene48295:CDS | 20.0% |
| !! | GTTGTAAATCAATAATTAAC+AGG | - | chr8.3:18093562-18093581 | MS.gene48295:CDS | 20.0% |
| !! | TGATTATTATTGTGTTATAG+AGG | - | chr8.3:18094251-18094270 | MS.gene48295:intron | 20.0% |
| !!! | CAATTTCATTTTTGTTTAGA+TGG | - | chr8.3:18095311-18095330 | MS.gene48295:CDS | 20.0% |
| !!! | CTAATTTTATAGAGATGAAT+CGG | - | chr8.3:18095917-18095936 | MS.gene48295:CDS | 20.0% |
| !!! | TAAGTCTCTTGATATTTTTA+GGG | - | chr8.3:18095686-18095705 | MS.gene48295:intron | 20.0% |
| !!! | TATTTTATATTTGAGATTGG+AGG | - | chr8.3:18095084-18095103 | MS.gene48295:intron | 20.0% |
| !!! | TGTTCGTATTTTTTTTAACT+CGG | - | chr8.3:18093502-18093521 | MS.gene48295:CDS | 20.0% |
| ! | AAAGCTGATGTATTTGATTA+AGG | - | chr8.3:18095036-18095055 | MS.gene48295:intron | 25.0% |
| ! | AAGGTAGCTAATAATAACTT+GGG | + | chr8.3:18095989-18096008 | None:intergenic | 25.0% |
| ! | AGAATAGTACATCATAATCA+TGG | - | chr8.3:18094708-18094727 | MS.gene48295:intron | 25.0% |
| ! | GAAAGAATAATCCAAATTCA+CGG | - | chr8.3:18093644-18093663 | MS.gene48295:intron | 25.0% |
| ! | GTGAATAAAGACATCATATT+CGG | + | chr8.3:18093423-18093442 | None:intergenic | 25.0% |
| ! | GTGAATTTGGATTATTCTTT+CGG | + | chr8.3:18093645-18093664 | None:intergenic | 25.0% |
| ! | TGAACATTGCAATATTTGAT+TGG | + | chr8.3:18095620-18095639 | None:intergenic | 25.0% |
| ! | TGAATAAAGACATCATATTC+GGG | + | chr8.3:18093422-18093441 | None:intergenic | 25.0% |
| ! | TTATTTCGGTCATAAATGTA+AGG | - | chr8.3:18094999-18095018 | MS.gene48295:intron | 25.0% |
| ! | TTTCTTTATTAACCTCAACA+TGG | + | chr8.3:18094390-18094409 | None:intergenic | 25.0% |
| !! | AGCTCTAACAAAAGATTATA+AGG | + | chr8.3:18094664-18094683 | None:intergenic | 25.0% |
| !! | CTAAGTCTCTTGATATTTTT+AGG | - | chr8.3:18095685-18095704 | MS.gene48295:intron | 25.0% |
| !!! | AGAAACTATTTTGACCAAAA+TGG | + | chr8.3:18095369-18095388 | None:intergenic | 25.0% |
| !!! | GTTGTTGCGATTTTTTATTT+CGG | - | chr8.3:18094985-18095004 | MS.gene48295:intron | 25.0% |
| !!! | TTTTGTTTAGATGGGTAAAA+TGG | - | chr8.3:18095320-18095339 | MS.gene48295:CDS | 25.0% |
| AAATATCAAGAGACTTAGCT+AGG | + | chr8.3:18095683-18095702 | None:intergenic | 30.0% | |
| AAATCGCAACAACATTTGTA+TGG | + | chr8.3:18094978-18094997 | None:intergenic | 30.0% | |
| AATATCAAGAGACTTAGCTA+GGG | + | chr8.3:18095682-18095701 | None:intergenic | 30.0% | |
| AATCAATAATTAACAGGCCT+CGG | - | chr8.3:18093568-18093587 | MS.gene48295:CDS | 30.0% | |
| AATCGCAACAACATTTGTAT+GGG | + | chr8.3:18094977-18094996 | None:intergenic | 30.0% | |
| AGAAAACAAACACAGAAACA+TGG | + | chr8.3:18096123-18096142 | None:intergenic | 30.0% | |
| ATAATCCTTAGTCCTTGAAT+CGG | + | chr8.3:18093531-18093550 | None:intergenic | 30.0% | |
| ATATACAAGTACTACAAACC+TGG | + | chr8.3:18093717-18093736 | None:intergenic | 30.0% | |
| ATATATTGCTACCTGATCAA+CGG | + | chr8.3:18095529-18095548 | None:intergenic | 30.0% | |
| ATTATTAGCTACCTTCAACT+TGG | - | chr8.3:18095994-18096013 | MS.gene48295:CDS | 30.0% | |
| CAGACAATTTCAATTGAGAA+TGG | - | chr8.3:18096238-18096257 | MS.gene48295:CDS | 30.0% | |
| GAAAACAAACACAGAAACAT+GGG | + | chr8.3:18096122-18096141 | None:intergenic | 30.0% | |
| GAAGGTAGCTAATAATAACT+TGG | + | chr8.3:18095990-18096009 | None:intergenic | 30.0% | |
| GATCGATTGTTACTCTTAAA+CGG | - | chr8.3:18095120-18095139 | MS.gene48295:intron | 30.0% | |
| TCAATAATGTTCTCGAAAAC+AGG | + | chr8.3:18093599-18093618 | None:intergenic | 30.0% | |
| TTATTAACCTCAACATGGTA+TGG | + | chr8.3:18094385-18094404 | None:intergenic | 30.0% | |
| TTATTAGCTACCTTCAACTT+GGG | - | chr8.3:18095995-18096014 | MS.gene48295:CDS | 30.0% | |
| ! | CTTCATCTCTTTTTCTCTTA+GGG | + | chr8.3:18096349-18096368 | None:intergenic | 30.0% |
| ! | TAATTATTGACTACGATCGA+TGG | + | chr8.3:18095743-18095762 | None:intergenic | 30.0% |
| ! | TCTTCATCTCTTTTTCTCTT+AGG | + | chr8.3:18096350-18096369 | None:intergenic | 30.0% |
| !!! | CTCTTGATATTTTTAGGGAT+TGG | - | chr8.3:18095691-18095710 | MS.gene48295:intron | 30.0% |
| AAAAATAGAGCCAATGGTGA+TGG | - | chr8.3:18094814-18094833 | MS.gene48295:intron | 35.0% | |
| AAAGGAAAGATGATCCCAAA+TGG | - | chr8.3:18096270-18096289 | MS.gene48295:intron | 35.0% | |
| ACATGTCTGTCAATTAGTGA+AGG | - | chr8.3:18096044-18096063 | MS.gene48295:intron | 35.0% | |
| AGTTATGTCGATGACTATGA+TGG | - | chr8.3:18094887-18094906 | MS.gene48295:intron | 35.0% | |
| CAAAGTTGTTTATGCGTAAC+TGG | - | chr8.3:18094166-18094185 | MS.gene48295:intron | 35.0% | |
| CACATACTTTGGTTGTTACA+CGG | + | chr8.3:18095793-18095812 | None:intergenic | 35.0% | |
| CACTAATTGACAGACATGTT+TGG | + | chr8.3:18096043-18096062 | None:intergenic | 35.0% | |
| CTCAAACAAAGATGCATCAA+AGG | - | chr8.3:18093879-18093898 | MS.gene48295:intron | 35.0% | |
| CTTGCTAGTAGTTTCCATTT+GGG | + | chr8.3:18096287-18096306 | None:intergenic | 35.0% | |
| GAGGATGAAATGGACAAATA+CGG | - | chr8.3:18093813-18093832 | MS.gene48295:intron | 35.0% | |
| GATGGTTATTTAGACATGGT+CGG | - | chr8.3:18094832-18094851 | MS.gene48295:intron | 35.0% | |
| GTCTAAATAACCATCACCAT+TGG | + | chr8.3:18094827-18094846 | None:intergenic | 35.0% | |
| GTCTTTATTCACACTTCTGA+TGG | - | chr8.3:18093431-18093450 | MS.gene48295:CDS | 35.0% | |
| GTTAGAGAGTTATTGCCTTA+TGG | - | chr8.3:18094909-18094928 | MS.gene48295:intron | 35.0% | |
| TAAACAACTAACCTGCAAAG+AGG | + | chr8.3:18094583-18094602 | None:intergenic | 35.0% | |
| TATGCTAGCTAAGTTGCATT+AGG | + | chr8.3:18094615-18094634 | None:intergenic | 35.0% | |
| TGCAAGAATCATCAGTTTGT+TGG | + | chr8.3:18094555-18094574 | None:intergenic | 35.0% | |
| TTATGCGTAACTGGTATCTA+TGG | - | chr8.3:18094175-18094194 | MS.gene48295:intron | 35.0% | |
| ! | ATTTTGCAACATGCAAGAAG+AGG | - | chr8.3:18094464-18094483 | MS.gene48295:intron | 35.0% |
| ! | GTGTTTGGAGCATATATGTA+CGG | - | chr8.3:18094339-18094358 | MS.gene48295:intron | 35.0% |
| ! | TTGATCTTTTCCACTGATGT+TGG | + | chr8.3:18095831-18095850 | None:intergenic | 35.0% |
| ! | TTTTGCAACATGCAAGAAGA+GGG | - | chr8.3:18094465-18094484 | MS.gene48295:intron | 35.0% |
| !! | ATGCATCTTTGTTTGAGTTG+CGG | + | chr8.3:18093876-18093895 | None:intergenic | 35.0% |
| !! | TGGTGATGGTTATTTAGACA+TGG | - | chr8.3:18094828-18094847 | MS.gene48295:intron | 35.0% |
| !! | TTAAAGGGTGTTAGTAGTTG+CGG | - | chr8.3:18094737-18094756 | MS.gene48295:intron | 35.0% |
| !!! | GGCGAGTTTTTTTTCTTTCT+TGG | - | chr8.3:18094853-18094872 | MS.gene48295:intron | 35.0% |
| AACGCGGTTCAAAAAACTGA+AGG | - | chr8.3:18094014-18094033 | MS.gene48295:intron | 40.0% | |
| AACGGCATCAAAATACAAGC+TGG | + | chr8.3:18095717-18095736 | None:intergenic | 40.0% | |
| ACGCGGTTCAAAAAACTGAA+GGG | - | chr8.3:18094015-18094034 | MS.gene48295:intron | 40.0% | |
| ACGGTTAACATCAGAAAACG+TGG | - | chr8.3:18093911-18093930 | MS.gene48295:intron | 40.0% | |
| AGGATATCAAGTTCAAGCAC+AGG | + | chr8.3:18094065-18094084 | None:intergenic | 40.0% | |
| ATAAAGTCTCACCGTTGATC+AGG | - | chr8.3:18095515-18095534 | MS.gene48295:CDS | 40.0% | |
| ATGGAAACTACTAGCAAGGA+AGG | - | chr8.3:18096289-18096308 | MS.gene48295:intron | 40.0% | |
| ATGGACATGACCACATACTT+TGG | + | chr8.3:18095804-18095823 | None:intergenic | 40.0% | |
| ATTGACAGACATGTTTGGCA+TGG | + | chr8.3:18096038-18096057 | None:intergenic | 40.0% | |
| CAATTGGAGACAAACTAACC+AGG | + | chr8.3:18093484-18093503 | None:intergenic | 40.0% | |
| CCAAATGGAAACTACTAGCA+AGG | - | chr8.3:18096285-18096304 | MS.gene48295:intron | 40.0% | |
| CCTTGCTAGTAGTTTCCATT+TGG | + | chr8.3:18096288-18096307 | None:intergenic | 40.0% | |
| CGTGTAACAACCAAAGTATG+TGG | - | chr8.3:18095791-18095810 | MS.gene48295:CDS | 40.0% | |
| GCTGTGAATGAAAAATGACC+TGG | - | chr8.3:18093773-18093792 | MS.gene48295:intron | 40.0% | |
| GGAAAACATAACCTTAGCTG+AGG | + | chr8.3:18096318-18096337 | None:intergenic | 40.0% | |
| GTAGCTTCATACAACGGATA+CGG | + | chr8.3:18093980-18093999 | None:intergenic | 40.0% | |
| GTCGATGAGTGATAAAACGT+GGG | - | chr8.3:18094791-18094810 | MS.gene48295:intron | 40.0% | |
| GTTAACATCAGAAAACGTGG+TGG | - | chr8.3:18093914-18093933 | MS.gene48295:intron | 40.0% | |
| TAGCTAAGTTGCATTAGGCA+TGG | + | chr8.3:18094610-18094629 | None:intergenic | 40.0% | |
| TATAGAGGAGAGAGAAATCG+AGG | - | chr8.3:18094266-18094285 | MS.gene48295:intron | 40.0% | |
| TGAGAATGGAGCAAGAGAAA+AGG | - | chr8.3:18096252-18096271 | MS.gene48295:intron | 40.0% | |
| TGGAGCATATATGTACGGAA+GGG | - | chr8.3:18094344-18094363 | MS.gene48295:intron | 40.0% | |
| TGGTGAGTAGCTTCATACAA+CGG | + | chr8.3:18093986-18094005 | None:intergenic | 40.0% | |
| TGTCGATGAGTGATAAAACG+TGG | - | chr8.3:18094790-18094809 | MS.gene48295:intron | 40.0% | |
| TTAACTCGGTATCCGATTCA+AGG | - | chr8.3:18093516-18093535 | MS.gene48295:CDS | 40.0% | |
| TTCAAACACGCAATTGTGTG+TGG | - | chr8.3:18095636-18095655 | MS.gene48295:intron | 40.0% | |
| TTCAAGCACAGGATCATGTT+TGG | + | chr8.3:18094054-18094073 | None:intergenic | 40.0% | |
| TTGGAGCATATATGTACGGA+AGG | - | chr8.3:18094343-18094362 | MS.gene48295:intron | 40.0% | |
| TTTGGTTGTTACACGGTAGT+GGG | + | chr8.3:18095786-18095805 | None:intergenic | 40.0% | |
| ! | AATCGTGGGATCAGATGTTT+TGG | - | chr8.3:18096389-18096408 | MS.gene48295:CDS | 40.0% |
| ! | CCTTATGGTGATGATAGTGT+GGG | - | chr8.3:18094924-18094943 | MS.gene48295:intron | 40.0% |
| ! | TTTTCTCTTAGGGAGAGACA+AGG | + | chr8.3:18096339-18096358 | None:intergenic | 40.0% |
| !! | GCATCAAAGGTCTTGTTCAA+CGG | - | chr8.3:18093892-18093911 | MS.gene48295:intron | 40.0% |
| !!! | AGCTTGTATTTTGATGCCGT+TGG | - | chr8.3:18095716-18095735 | MS.gene48295:intron | 40.0% |
| !!! | CCTGGTTTTTTACAGTTGCA+CGG | - | chr8.3:18093791-18093810 | MS.gene48295:intron | 40.0% |
| !!! | GTCATTTTTCATTCACAGCG+CGG | + | chr8.3:18093772-18093791 | None:intergenic | 40.0% |
| AACATGCAAGAAGAGGGTGA+AGG | - | chr8.3:18094471-18094490 | MS.gene48295:intron | 45.0% | |
| AACATGGTATGGTCCAACGT+CGG | + | chr8.3:18094374-18094393 | None:intergenic | 45.0% | |
| AACTAACCAGGATGCTTGTG+TGG | + | chr8.3:18093472-18093491 | None:intergenic | 45.0% | |
| ACATGCAAGAAGAGGGTGAA+GGG | - | chr8.3:18094472-18094491 | MS.gene48295:intron | 45.0% | |
| ACTAACCAGGATGCTTGTGT+GGG | + | chr8.3:18093471-18093490 | None:intergenic | 45.0% | |
| ACTCACCAATCACTTCAACG+CGG | - | chr8.3:18093998-18094017 | MS.gene48295:intron | 45.0% | |
| ACTTGATATCCTCCGCTTCA+TGG | - | chr8.3:18094073-18094092 | MS.gene48295:intron | 45.0% | |
| AGAGTGACCATAGACAATCG+TGG | - | chr8.3:18096374-18096393 | MS.gene48295:CDS | 45.0% | |
| AGCAAATTCTCCACCTGTCA+AGG | - | chr8.3:18094421-18094440 | MS.gene48295:intron | 45.0% | |
| ATACAACGGATACGGAGATC+CGG | + | chr8.3:18093972-18093991 | None:intergenic | 45.0% | |
| CAAATACGGAATCCACCTGT+TGG | - | chr8.3:18093827-18093846 | MS.gene48295:intron | 45.0% | |
| CCCACACTATCATCACCATA+AGG | + | chr8.3:18094927-18094946 | None:intergenic | 45.0% | |
| CCGTGCAACTGTAAAAAACC+AGG | + | chr8.3:18093794-18093813 | None:intergenic | 45.0% | |
| CGGTTCAAAAAACTGAAGGG+TGG | - | chr8.3:18094018-18094037 | MS.gene48295:intron | 45.0% | |
| CGTGGGAAAAATAGAGCCAA+TGG | - | chr8.3:18094808-18094827 | MS.gene48295:intron | 45.0% | |
| CTACAAACCTGGATGAGTAG+AGG | + | chr8.3:18093706-18093725 | None:intergenic | 45.0% | |
| CTTGCAATGTTCCTCTTTGC+AGG | - | chr8.3:18094569-18094588 | MS.gene48295:intron | 45.0% | |
| CTTTGGTTGTTACACGGTAG+TGG | + | chr8.3:18095787-18095806 | None:intergenic | 45.0% | |
| GAATACCCAAACCACACCAA+TGG | - | chr8.3:18093385-18093404 | MS.gene48295:CDS | 45.0% | |
| GAGTGACCATAGACAATCGT+GGG | - | chr8.3:18096375-18096394 | MS.gene48295:CDS | 45.0% | |
| GCAAATTCTCCACCTGTCAA+GGG | - | chr8.3:18094422-18094441 | MS.gene48295:intron | 45.0% | |
| GGTATCCGATTCAAGGACTA+AGG | - | chr8.3:18093523-18093542 | MS.gene48295:CDS | 45.0% | |
| GTTGTATGCGGAACTTTCTG+AGG | - | chr8.3:18094309-18094328 | MS.gene48295:intron | 45.0% | |
| TACCTTCAACTTGGGAAGCA+TGG | - | chr8.3:18096003-18096022 | MS.gene48295:CDS | 45.0% | |
| TCTGATCCCACGATTGTCTA+TGG | + | chr8.3:18096384-18096403 | None:intergenic | 45.0% | |
| TTGAACCGCGTTGAAGTGAT+TGG | + | chr8.3:18094006-18094025 | None:intergenic | 45.0% | |
| TTTCGCTTTCGTCCATGAAG+CGG | + | chr8.3:18094088-18094107 | None:intergenic | 45.0% | |
| ! | AACCATGCTTCCCAAGTTGA+AGG | + | chr8.3:18096008-18096027 | None:intergenic | 45.0% |
| ! | GAAATCGAGGAAGCATAGAG+AGG | - | chr8.3:18094279-18094298 | MS.gene48295:intron | 45.0% |
| ! | GCCTTATGGTGATGATAGTG+TGG | - | chr8.3:18094923-18094942 | MS.gene48295:intron | 45.0% |
| ! | TATGGTGATGATAGTGTGGG+TGG | - | chr8.3:18094927-18094946 | MS.gene48295:intron | 45.0% |
| !! | CAGGTGGAGAATTTGCTACA+CGG | + | chr8.3:18094418-18094437 | None:intergenic | 45.0% |
| !! | TTCCACTGATGTTGGTGTCA+TGG | + | chr8.3:18095823-18095842 | None:intergenic | 45.0% |
| !!! | GGTTTTTTACAGTTGCACGG+AGG | - | chr8.3:18093794-18093813 | MS.gene48295:intron | 45.0% |
| AAGGAAGGTTGCCTCAGCTA+AGG | - | chr8.3:18096304-18096323 | MS.gene48295:intron | 50.0% | |
| AATGGATGCCGTGAGTGTGT+TGG | + | chr8.3:18095351-18095370 | None:intergenic | 50.0% | |
| ACACGTGAGATAGTGCCAAC+AGG | + | chr8.3:18093845-18093864 | None:intergenic | 50.0% | |
| AGAGGAGCAAGGGTTGTATG+CGG | - | chr8.3:18094297-18094316 | MS.gene48295:intron | 50.0% | |
| CAGTTGCACGGAGGATGAAA+TGG | - | chr8.3:18093803-18093822 | MS.gene48295:intron | 50.0% | |
| CGTTGGACCATACCATGTTG+AGG | - | chr8.3:18094375-18094394 | MS.gene48295:intron | 50.0% | |
| CTCGAAAACAGGAGATACCG+AGG | + | chr8.3:18093588-18093607 | None:intergenic | 50.0% | |
| GACCTCCATTGGTGTGGTTT+GGG | + | chr8.3:18093393-18093412 | None:intergenic | 50.0% | |
| GACTACGATCGATGGACCAA+CGG | + | chr8.3:18095735-18095754 | None:intergenic | 50.0% | |
| GTAGAGGTAGCCGATGAAAG+CGG | + | chr8.3:18093690-18093709 | None:intergenic | 50.0% | |
| GTAGCCGATGAAAGCGGTTA+CGG | + | chr8.3:18093684-18093703 | None:intergenic | 50.0% | |
| GTCCATGACACCAACATCAG+TGG | - | chr8.3:18095818-18095837 | MS.gene48295:CDS | 50.0% | |
| TAAGACGACCTCCATTGGTG+TGG | + | chr8.3:18093399-18093418 | None:intergenic | 50.0% | |
| TACCCAAACCACACCAATGG+AGG | - | chr8.3:18093388-18093407 | MS.gene48295:CDS | 50.0% | |
| TGGAAGGAACGCCGTGAATT+TGG | + | chr8.3:18093658-18093677 | None:intergenic | 50.0% | |
| TGGTCACACCAACACACTCA+CGG | - | chr8.3:18095340-18095359 | MS.gene48295:CDS | 50.0% | |
| ! | AGGAAGCATAGAGAGGAGCA+AGG | - | chr8.3:18094286-18094305 | MS.gene48295:intron | 50.0% |
| ! | ATGATAGTGTGGGTGGTGGT+CGG | - | chr8.3:18094934-18094953 | MS.gene48295:intron | 50.0% |
| ! | CACACTCACGGCATCCATTT+TGG | - | chr8.3:18095352-18095371 | MS.gene48295:CDS | 50.0% |
| ! | GCACAGGATCATGTTTGGTG+AGG | + | chr8.3:18094049-18094068 | None:intergenic | 50.0% |
| ! | GGAAGCATAGAGAGGAGCAA+GGG | - | chr8.3:18094287-18094306 | MS.gene48295:intron | 50.0% |
| !! | TTCTGAGGCGATGGAGTGTT+TGG | - | chr8.3:18094324-18094343 | MS.gene48295:intron | 50.0% |
| AAGCTGAAGCCCTTGACAGG+TGG | + | chr8.3:18094434-18094453 | None:intergenic | 55.0% | |
| ACCGCCGTAACCGCTTTCAT+CGG | - | chr8.3:18093677-18093696 | MS.gene48295:intron | 55.0% | |
| CAGAAGCTGAAGCCCTTGAC+AGG | + | chr8.3:18094437-18094456 | None:intergenic | 55.0% | |
| CGACCTCCATTGGTGTGGTT+TGG | + | chr8.3:18093394-18093413 | None:intergenic | 55.0% | |
| CGTGAGATAGTGCCAACAGG+TGG | + | chr8.3:18093842-18093861 | None:intergenic | 55.0% | |
| TCGGAGCTGCGTTGTTTACG+CGG | + | chr8.3:18093626-18093645 | None:intergenic | 55.0% | |
| TCGGCTACCTCTACTCATCC+AGG | - | chr8.3:18093696-18093715 | MS.gene48295:intron | 55.0% | |
| TCGGGTAAGACGACCTCCAT+TGG | + | chr8.3:18093404-18093423 | None:intergenic | 55.0% | |
| TGCAAGAAGAGGGTGAAGGG+AGG | - | chr8.3:18094475-18094494 | MS.gene48295:intron | 55.0% | |
| TGGATGTACTCCAACTCGCC+AGG | - | chr8.3:18093934-18093953 | MS.gene48295:intron | 55.0% | |
| ! | GCTGGAGGTGCAAACGTATG+TGG | - | chr8.3:18094500-18094519 | MS.gene48295:intron | 55.0% |
| ! | GGTGATGATAGTGTGGGTGG+TGG | - | chr8.3:18094930-18094949 | MS.gene48295:intron | 55.0% |
| !! | TGCGGAACTTTCTGAGGCGA+TGG | - | chr8.3:18094315-18094334 | MS.gene48295:intron | 55.0% |
| AAAGCGGTTACGGCGGTGGA+AGG | + | chr8.3:18093674-18093693 | None:intergenic | 60.0% | |
| ACCAGGATGCTTGTGTGGGC+TGG | + | chr8.3:18093467-18093486 | None:intergenic | 60.0% | |
| CGCTTTCGTCCATGAAGCGG+AGG | + | chr8.3:18094085-18094104 | None:intergenic | 60.0% | |
| GATGAAAGCGGTTACGGCGG+TGG | + | chr8.3:18093678-18093697 | None:intergenic | 60.0% | |
| GCCGATGAAAGCGGTTACGG+CGG | + | chr8.3:18093681-18093700 | None:intergenic | 60.0% | |
| TCCAGCCCACACAAGCATCC+TGG | - | chr8.3:18093463-18093482 | MS.gene48295:CDS | 60.0% | |
| AGAGGGTGAAGGGAGGCTGC+TGG | - | chr8.3:18094482-18094501 | MS.gene48295:intron | 65.0% | |
| ATCCGGTGCATCGCAGAGCC+TGG | + | chr8.3:18093955-18093974 | None:intergenic | 65.0% | |
| CATCGCAGAGCCTGGCGAGT+TGG | + | chr8.3:18093947-18093966 | None:intergenic | 65.0% | |
| ! | ACGGAAGGGTGCACCGACGT+TGG | - | chr8.3:18094358-18094377 | MS.gene48295:intron | 65.0% |
| CGCCAGGCTCTGCGATGCAC+CGG | - | chr8.3:18093950-18093969 | MS.gene48295:intron | 70.0% | |
| GGGTGAAGGGAGGCTGCTGG+AGG | - | chr8.3:18094485-18094504 | MS.gene48295:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 18093377 | 18096466 | 18093377 | ID=MS.gene48295 |
| chr8.3 | mRNA | 18093377 | 18096466 | 18093377 | ID=MS.gene48295.t1;Parent=MS.gene48295 |
| chr8.3 | exon | 18096359 | 18096466 | 18096359 | ID=MS.gene48295.t1.exon1;Parent=MS.gene48295.t1 |
| chr8.3 | CDS | 18096359 | 18096466 | 18096359 | ID=cds.MS.gene48295.t1;Parent=MS.gene48295.t1 |
| chr8.3 | exon | 18096126 | 18096259 | 18096126 | ID=MS.gene48295.t1.exon2;Parent=MS.gene48295.t1 |
| chr8.3 | CDS | 18096126 | 18096259 | 18096126 | ID=cds.MS.gene48295.t1;Parent=MS.gene48295.t1 |
| chr8.3 | exon | 18095734 | 18096037 | 18095734 | ID=MS.gene48295.t1.exon3;Parent=MS.gene48295.t1 |
| chr8.3 | CDS | 18095734 | 18096037 | 18095734 | ID=cds.MS.gene48295.t1;Parent=MS.gene48295.t1 |
| chr8.3 | exon | 18095253 | 18095572 | 18095253 | ID=MS.gene48295.t1.exon4;Parent=MS.gene48295.t1 |
| chr8.3 | CDS | 18095253 | 18095572 | 18095253 | ID=cds.MS.gene48295.t1;Parent=MS.gene48295.t1 |
| chr8.3 | exon | 18093377 | 18093602 | 18093377 | ID=MS.gene48295.t1.exon5;Parent=MS.gene48295.t1 |
| chr8.3 | CDS | 18093377 | 18093602 | 18093377 | ID=cds.MS.gene48295.t1;Parent=MS.gene48295.t1 |
| Gene Sequence |
| Protein sequence |
