AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene060190

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060190.t1 MTR_3g054210 81.633 147 26 1 73 219 291 436 2.82e-76 236
MS.gene060190.t1 MTR_3g054130 78.000 150 30 2 73 220 393 541 9.52e-73 230
MS.gene060190.t1 MTR_5g093720 67.333 150 46 2 73 220 393 541 2.87e-62 203
MS.gene060190.t1 MTR_4g132840 64.000 150 51 2 73 220 392 540 4.06e-60 197
MS.gene060190.t1 MTR_2g025180 62.667 150 53 2 73 220 390 538 2.26e-56 187
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060190.t1 AT3G20290 67.333 150 46 2 73 220 395 543 6.83e-62 202
MS.gene060190.t1 AT3G20290 67.333 150 46 2 73 220 395 543 6.83e-62 202
MS.gene060190.t1 AT3G20290 67.333 150 46 2 73 220 395 543 6.83e-62 202
MS.gene060190.t1 AT4G05520 62.000 150 54 2 73 220 394 542 2.91e-58 192
MS.gene060190.t1 AT4G05520 62.000 150 54 2 73 220 395 543 2.94e-58 192

Find 37 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGTTTCATGCAGGAAAAT+TGG 0.188397 2.3:-20673488 MS.gene060190:intron
GATAATATATACATGTATTT+TGG 0.213238 2.3:+20671171 None:intergenic
TTATGATCACAAGCCTTCTT+TGG 0.292775 2.3:+20671870 None:intergenic
CTAAAAGTCTTTAAGAGATT+AGG 0.303530 2.3:+20670825 None:intergenic
AGTACACCAATGTTGTTTAC+AGG 0.312922 2.3:+20671951 None:intergenic
GGCTCGAAATATTTGATCTT+AGG 0.352442 2.3:-20673429 MS.gene060190:intron
AAGCAAATGCCTATCGTGAT+AGG 0.362210 2.3:-20671136 MS.gene060190:CDS
TCTTTGAAATGATCAACATT+TGG 0.390474 2.3:+20670936 None:intergenic
ATGTTTCATGCAGGAAAATT+GGG 0.391791 2.3:-20673487 MS.gene060190:intron
TCATTACCTACAAAACTATT+CGG 0.392496 2.3:+20673561 None:intergenic
GTAAACAACATTGGTGTACT+TGG 0.425488 2.3:-20671948 MS.gene060190:CDS
TCGGCGTAGACGCTCAGCTC+AGG 0.431427 2.3:+20673678 None:intergenic
GAACGCGGAATTCTATCTTC+TGG 0.448942 2.3:-20673619 MS.gene060190:CDS
TTCTATCTTCTGGATATTGA+AGG 0.464225 2.3:-20673609 MS.gene060190:CDS
TCTAAAAGATATACCAAAGA+AGG 0.473802 2.3:-20671883 MS.gene060190:CDS
GTTTACAGGCTGATCATTGA+AGG 0.489399 2.3:+20671965 None:intergenic
ACCGAAAATAATACAAGTTG+TGG 0.504763 2.3:-20670871 MS.gene060190:CDS
CAACATGTTAACGAACTTGT+CGG 0.507174 2.3:+20673659 None:intergenic
ATCAACATTTGGAAAGTCTC+CGG 0.514256 2.3:+20670947 None:intergenic
ACATTTGGAAAGTCTCCGGC+AGG 0.524880 2.3:+20670951 None:intergenic
ATCTTCTGGATATTGAAGGC+TGG 0.525292 2.3:-20673605 MS.gene060190:CDS
ACACGTGTTACAGGTACAAA+GGG 0.536942 2.3:-20670987 MS.gene060190:intron
TTAGCTTTCCCTATCACGAT+AGG 0.543279 2.3:+20671127 None:intergenic
AGCAAATGCCTATCGTGATA+GGG 0.544684 2.3:-20671135 MS.gene060190:CDS
AACTCATTCATAACCTGGAG+GGG 0.556820 2.3:-20671093 MS.gene060190:CDS
CGGCGTAGACGCTCAGCTCA+GGG 0.557247 2.3:+20673679 None:intergenic
ATATTTCGAGCCAGCTTCCG+TGG 0.563594 2.3:+20673440 None:intergenic
AAATGTTGATCATTTCAAAG+AGG 0.573112 2.3:-20670934 MS.gene060190:CDS
ACTCATTCATAACCTGGAGG+GGG 0.584199 2.3:-20671092 MS.gene060190:CDS
AAACTCATTCATAACCTGGA+GGG 0.592598 2.3:-20671094 MS.gene060190:CDS
AACACGTGTTACAGGTACAA+AGG 0.600379 2.3:-20670988 MS.gene060190:intron
GGAGTTCTATCTCTCCCTGC+CGG 0.603820 2.3:-20670966 MS.gene060190:CDS
GATCAGCCTGTAAACAACAT+TGG 0.617494 2.3:-20671957 MS.gene060190:CDS
CTCATTCATAACCTGGAGGG+GGG 0.639818 2.3:-20671091 MS.gene060190:CDS
CATTTGGAAAGTCTCCGGCA+GGG 0.691744 2.3:+20670952 None:intergenic
AAAACTCATTCATAACCTGG+AGG 0.695365 2.3:-20671095 MS.gene060190:CDS
CGATTCAGATCTCATGAACG+CGG 0.697306 2.3:-20673634 MS.gene060190:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCTTAAGAAATTAATAT+GGG - chr2.3:20673030-20673049 MS.gene060190:intron 10.0%
!! AATAATAACAAAGAAAATCT+TGG + chr2.3:20672458-20672477 None:intergenic 15.0%
!! AATGATGATTAAACTAATTT+GGG - chr2.3:20670965-20670984 MS.gene060190:CDS 15.0%
!! ATAATAACAAAGAAAATCTT+GGG + chr2.3:20672457-20672476 None:intergenic 15.0%
!! CTTAGATTTATAATCTAAAA+GGG + chr2.3:20673130-20673149 None:intergenic 15.0%
!! TAATGATGATTAAACTAATT+TGG - chr2.3:20670964-20670983 MS.gene060190:CDS 15.0%
!!! GATAATATATACATGTATTT+TGG + chr2.3:20673340-20673359 None:intergenic 15.0%
!!! GTTTTCTTAAGAAATTAATA+TGG - chr2.3:20673029-20673048 MS.gene060190:intron 15.0%
!! AATACTCAAAATGTACTTAA+AGG - chr2.3:20671389-20671408 MS.gene060190:intron 20.0%
!! AATATTAAATGTTAGCATAG+TGG + chr2.3:20673227-20673246 None:intergenic 20.0%
!! ACGATTTAAATATATCCATA+TGG - chr2.3:20672207-20672226 MS.gene060190:intron 20.0%
!! GCTTAGATTTATAATCTAAA+AGG + chr2.3:20673131-20673150 None:intergenic 20.0%
!! TATATACACACTTATATGAT+AGG + chr2.3:20672241-20672260 None:intergenic 20.0%
!!! ATATTTTATTTAGTGTGAAG+GGG - chr2.3:20673063-20673082 MS.gene060190:intron 20.0%
!!! CATGTACTTTTTAGTATATT+TGG - chr2.3:20672815-20672834 MS.gene060190:intron 20.0%
!!! GAAAGGATATTTTTAGTTAT+CGG + chr2.3:20671152-20671171 None:intergenic 20.0%
!!! GATATTTTATTTAGTGTGAA+GGG - chr2.3:20673062-20673081 MS.gene060190:intron 20.0%
!!! TACTTTTTAGTATATTTGGT+GGG - chr2.3:20672819-20672838 MS.gene060190:intron 20.0%
!!! TATCTTTTAGATATGTAAGA+AGG + chr2.3:20672616-20672635 None:intergenic 20.0%
!!! TGATATTTTATTTAGTGTGA+AGG - chr2.3:20673061-20673080 MS.gene060190:intron 20.0%
! AAAACATTCTAAGCTAAGAA+AGG + chr2.3:20671169-20671188 None:intergenic 25.0%
! AAATGTTGATCATTTCAAAG+AGG - chr2.3:20673574-20673593 MS.gene060190:CDS 25.0%
! AATAAATCCAATAGAAGAGA+AGG + chr2.3:20671568-20671587 None:intergenic 25.0%
! ACTAAAGCACATGAAAATTA+TGG + chr2.3:20671639-20671658 None:intergenic 25.0%
! AGTAATTAAAGAGTTGTTTG+TGG + chr2.3:20673462-20673481 None:intergenic 25.0%
! ATAAATCCAATAGAAGAGAA+GGG + chr2.3:20671567-20671586 None:intergenic 25.0%
! ATTCATTGATCTACATGTAT+AGG + chr2.3:20673296-20673315 None:intergenic 25.0%
! CAACAAAAATTTGCATAACA+TGG + chr2.3:20672887-20672906 None:intergenic 25.0%
! CAATTATCTTTCAACTTATG+TGG + chr2.3:20672794-20672813 None:intergenic 25.0%
! TCATTACCTACAAAACTATT+CGG + chr2.3:20670950-20670969 None:intergenic 25.0%
! TCTAAAAGATATACCAAAGA+AGG - chr2.3:20672625-20672644 MS.gene060190:intron 25.0%
! TCTATTGAAGTTACATTTCT+TGG - chr2.3:20673256-20673275 MS.gene060190:intron 25.0%
! TCTTAAGAAATTAATATGGG+AGG - chr2.3:20673033-20673052 MS.gene060190:intron 25.0%
! TGTATCTCATCATAGAATTT+AGG + chr2.3:20672745-20672764 None:intergenic 25.0%
!! CACATAAGTTGAAAGATAAT+TGG - chr2.3:20672792-20672811 MS.gene060190:intron 25.0%
!! CTAAAAGTCTTTAAGAGATT+AGG + chr2.3:20673686-20673705 None:intergenic 25.0%
!! TCCACAACTTGTATTATTTT+CGG + chr2.3:20673641-20673660 None:intergenic 25.0%
!!! AAACTATCTTTTAGAGCTTT+TGG - chr2.3:20672331-20672350 MS.gene060190:intron 25.0%
!!! GTACTTTTTAGTATATTTGG+TGG - chr2.3:20672818-20672837 MS.gene060190:intron 25.0%
!!! TATTGATTTCATAGTTGTTG+TGG - chr2.3:20672910-20672929 MS.gene060190:intron 25.0%
!!! TCTTTGAAATGATCAACATT+TGG + chr2.3:20673575-20673594 None:intergenic 25.0%
AAAACCTTCTAAGCTAAGAA+AGG + chr2.3:20671198-20671217 None:intergenic 30.0%
ACAAAAACTCATTCATAACC+TGG - chr2.3:20673410-20673429 MS.gene060190:intron 30.0%
ACCGAAAATAATACAAGTTG+TGG - chr2.3:20673637-20673656 MS.gene060190:CDS 30.0%
ACTGTTGTACCTAATAAAAG+TGG - chr2.3:20671862-20671881 MS.gene060190:intron 30.0%
AGTATTTGAACTCGTATCTT+AGG + chr2.3:20671375-20671394 None:intergenic 30.0%
ATATCCTTTCTTAGCTTAGA+AGG - chr2.3:20671162-20671181 MS.gene060190:CDS 30.0%
ATGGAGTACATTACAATTTC+CGG + chr2.3:20671620-20671639 None:intergenic 30.0%
ATGTTTCATGCAGGAAAATT+GGG - chr2.3:20671021-20671040 MS.gene060190:intron 30.0%
CAAGACAAAATATTGACAAG+AGG - chr2.3:20672135-20672154 MS.gene060190:intron 30.0%
CTATGATGAGATACATTTGT+GGG - chr2.3:20672750-20672769 MS.gene060190:intron 30.0%
CTTCTTTACTCTCTTATTCT+GGG - chr2.3:20671444-20671463 MS.gene060190:intron 30.0%
GGTGGGAAAACATTAATAAA+AGG - chr2.3:20672836-20672855 MS.gene060190:intron 30.0%
GTATTGAATCATGATCGATA+AGG - chr2.3:20671657-20671676 MS.gene060190:intron 30.0%
TAAACTAATTTGGGCTGTTT+GGG - chr2.3:20670974-20670993 MS.gene060190:CDS 30.0%
TAAGAAATTAATATGGGAGG+AGG - chr2.3:20673036-20673055 MS.gene060190:intron 30.0%
TATAAGTATGCCAATGTACA+TGG - chr2.3:20672099-20672118 MS.gene060190:intron 30.0%
TATGATGAGATACATTTGTG+GGG - chr2.3:20672751-20672770 MS.gene060190:intron 30.0%
TCTATGATGAGATACATTTG+TGG - chr2.3:20672749-20672768 MS.gene060190:intron 30.0%
TGTACCTAATAAAAGTGGTA+GGG - chr2.3:20671867-20671886 MS.gene060190:intron 30.0%
TTAAACTAATTTGGGCTGTT+TGG - chr2.3:20670973-20670992 MS.gene060190:CDS 30.0%
TTCTATCTTCTGGATATTGA+AGG - chr2.3:20670899-20670918 MS.gene060190:CDS 30.0%
TTGTACCTAATAAAAGTGGT+AGG - chr2.3:20671866-20671885 MS.gene060190:intron 30.0%
! CTCTTGTCAATATTTTGTCT+TGG + chr2.3:20672137-20672156 None:intergenic 30.0%
! TAAGCTGAAATTCTAGAGAT+TGG + chr2.3:20672938-20672957 None:intergenic 30.0%
! TGCAGAATTGTAATTTTCCA+CGG - chr2.3:20671051-20671070 MS.gene060190:intron 30.0%
!! AATTTTGACATGTTTCATGC+AGG - chr2.3:20671012-20671031 MS.gene060190:intron 30.0%
AAAACTCATTCATAACCTGG+AGG - chr2.3:20673413-20673432 MS.gene060190:intron 35.0%
AAAAGTGGTAGGGGAATATA+AGG - chr2.3:20671877-20671896 MS.gene060190:CDS 35.0%
AAAATCGAAACACGTGTTAC+AGG - chr2.3:20673512-20673531 MS.gene060190:intron 35.0%
AAACTAATTTGGGCTGTTTG+GGG - chr2.3:20670975-20670994 MS.gene060190:CDS 35.0%
AAACTCATTCATAACCTGGA+GGG - chr2.3:20673414-20673433 MS.gene060190:intron 35.0%
AACATGGTACAAAATGTGGT+AGG + chr2.3:20672871-20672890 None:intergenic 35.0%
AAGAAAATCTTGGGTCTGTT+CGG + chr2.3:20672448-20672467 None:intergenic 35.0%
ATCAACATTTGGAAAGTCTC+CGG + chr2.3:20673564-20673583 None:intergenic 35.0%
ATTTCCGGTGAGTTCATTTA+AGG + chr2.3:20671605-20671624 None:intergenic 35.0%
CAACATGTTAACGAACTTGT+CGG + chr2.3:20670852-20670871 None:intergenic 35.0%
CATGTTTCATGCAGGAAAAT+TGG - chr2.3:20671020-20671039 MS.gene060190:intron 35.0%
CCAGAATAAGAGAGTAAAGA+AGG + chr2.3:20671446-20671465 None:intergenic 35.0%
CCTTCTTTACTCTCTTATTC+TGG - chr2.3:20671443-20671462 MS.gene060190:intron 35.0%
CTTGTGACATTGCCTTATAT+TGG - chr2.3:20672515-20672534 MS.gene060190:intron 35.0%
GACAAAATATTGACAAGAGG+TGG - chr2.3:20672138-20672157 MS.gene060190:intron 35.0%
GATTTCAGTTCAAACTCTGA+TGG + chr2.3:20673174-20673193 None:intergenic 35.0%
GCATAACATGGTACAAAATG+TGG + chr2.3:20672875-20672894 None:intergenic 35.0%
GCCAAAAAGAGAAAGTTAGA+TGG + chr2.3:20671331-20671350 None:intergenic 35.0%
GGCTCGAAATATTTGATCTT+AGG - chr2.3:20671079-20671098 MS.gene060190:intron 35.0%
GGTGTTCTGTTGTCAAAAAA+TGG - chr2.3:20671831-20671850 MS.gene060190:intron 35.0%
GTAAACAACATTGGTGTACT+TGG - chr2.3:20672560-20672579 MS.gene060190:intron 35.0%
GTACCTAATAAAAGTGGTAG+GGG - chr2.3:20671868-20671887 MS.gene060190:intron 35.0%
GTTATCTTTGTCCAATGTCT+GGG - chr2.3:20672176-20672195 MS.gene060190:intron 35.0%
TACTTAAAGGTCTTCTTTGC+TGG - chr2.3:20671402-20671421 MS.gene060190:intron 35.0%
TCTAACTGTTTAGGTACGAA+CGG - chr2.3:20671119-20671138 MS.gene060190:CDS 35.0%
TGAACCTTAAATGAACTCAC+CGG - chr2.3:20671598-20671617 MS.gene060190:intron 35.0%
TGAATCATGATCGATAAGGA+GGG - chr2.3:20671661-20671680 MS.gene060190:intron 35.0%
TGCACTTTAAGTCATCTAGA+GGG - chr2.3:20671966-20671985 MS.gene060190:CDS 35.0%
TGTTATCTTTGTCCAATGTC+TGG - chr2.3:20672175-20672194 MS.gene060190:intron 35.0%
TTACTCTCTTATTCTGGGTT+TGG - chr2.3:20671449-20671468 MS.gene060190:intron 35.0%
TTATGATCACAAGCCTTCTT+TGG + chr2.3:20672641-20672660 None:intergenic 35.0%
TTGAAGGATCTGCCAATATA+AGG + chr2.3:20672530-20672549 None:intergenic 35.0%
TTGAATCATGATCGATAAGG+AGG - chr2.3:20671660-20671679 MS.gene060190:intron 35.0%
TTGAGTTATTCTGTAGTGTG+TGG - chr2.3:20672060-20672079 MS.gene060190:intron 35.0%
TTGCACTTTAAGTCATCTAG+AGG - chr2.3:20671965-20671984 MS.gene060190:CDS 35.0%
! AAACCTCCTGATCTAAAATC+AGG + chr2.3:20671802-20671821 None:intergenic 35.0%
! AAACGCTTTTCACCTCATAA+AGG - chr2.3:20671720-20671739 MS.gene060190:intron 35.0%
! AACCTCCTGATCTAAAATCA+GGG + chr2.3:20671801-20671820 None:intergenic 35.0%
! AACGCTTTTCACCTCATAAA+GGG - chr2.3:20671721-20671740 MS.gene060190:intron 35.0%
! AGTACACCAATGTTGTTTAC+AGG + chr2.3:20672560-20672579 None:intergenic 35.0%
! GCCATCTAACTTTCTCTTTT+TGG - chr2.3:20671327-20671346 MS.gene060190:intron 35.0%
!! ATTCCCCTACCACTTTTATT+AGG + chr2.3:20671874-20671893 None:intergenic 35.0%
!!! CTCAATCCGAATAGTTTTGT+AGG - chr2.3:20670941-20670960 MS.gene060190:CDS 35.0%
AACACGTGTTACAGGTACAA+AGG - chr2.3:20673520-20673539 MS.gene060190:intron 40.0%
AACTCATTCATAACCTGGAG+GGG - chr2.3:20673415-20673434 MS.gene060190:intron 40.0%
AAGCAAATGCCTATCGTGAT+AGG - chr2.3:20673372-20673391 MS.gene060190:intron 40.0%
ACACGTGTTACAGGTACAAA+GGG - chr2.3:20673521-20673540 MS.gene060190:intron 40.0%
AGAGAAGGGTAGAGATAAGA+AGG + chr2.3:20671553-20671572 None:intergenic 40.0%
AGCAAATGCCTATCGTGATA+GGG - chr2.3:20673373-20673392 MS.gene060190:intron 40.0%
ATATTGACAAGAGGTGGCAT+TGG - chr2.3:20672144-20672163 MS.gene060190:intron 40.0%
ATCTTCTGGATATTGAAGGC+TGG - chr2.3:20670903-20670922 MS.gene060190:CDS 40.0%
CCTAAACAGTTAGATTCCAG+AGG + chr2.3:20671113-20671132 None:intergenic 40.0%
GAGAAGGGTAGAGATAAGAA+GGG + chr2.3:20671552-20671571 None:intergenic 40.0%
GATCAGCCTGTAAACAACAT+TGG - chr2.3:20672551-20672570 MS.gene060190:intron 40.0%
GCTTGGCATGTAATCTAAAG+AGG + chr2.3:20673199-20673218 None:intergenic 40.0%
GTTTACAGGCTGATCATTGA+AGG + chr2.3:20672546-20672565 None:intergenic 40.0%
TAAAGGTCTTCTTTGCTGGA+CGG - chr2.3:20671406-20671425 MS.gene060190:intron 40.0%
TCAAAATCCAACCACTGTGT+GGG + chr2.3:20672044-20672063 None:intergenic 40.0%
TCTCTACCCTTCTCTTCTAT+TGG - chr2.3:20671558-20671577 MS.gene060190:intron 40.0%
TGATAGGCAGTTATGCCATA+TGG + chr2.3:20672225-20672244 None:intergenic 40.0%
TTAGCATAGTGGTAACTGCT+TGG + chr2.3:20673216-20673235 None:intergenic 40.0%
TTGAATTGTCTTTGCCCAGA+AGG + chr2.3:20672010-20672029 None:intergenic 40.0%
! ACCTCCTGATCTAAAATCAG+GGG + chr2.3:20671800-20671819 None:intergenic 40.0%
! ATCTTAGGTGCATTTTCCTC+TGG - chr2.3:20671094-20671113 MS.gene060190:CDS 40.0%
! CATCTAGAGGGTTTTTGCTT+CGG - chr2.3:20671978-20671997 MS.gene060190:intron 40.0%
! TAGATCAGGAGGTTTTCTTG+TGG - chr2.3:20671807-20671826 MS.gene060190:intron 40.0%
! TGCTTCGGTATTTTCCTTCT+GGG - chr2.3:20671993-20672012 MS.gene060190:intron 40.0%
! TTAGCTTTCCCTATCACGAT+AGG + chr2.3:20673384-20673403 None:intergenic 40.0%
! TTGCTTCGGTATTTTCCTTC+TGG - chr2.3:20671992-20672011 MS.gene060190:intron 40.0%
! TTGTAATTTTCCACGGAAGC+TGG - chr2.3:20671058-20671077 MS.gene060190:intron 40.0%
!! CCTCTGGAATCTAACTGTTT+AGG - chr2.3:20671110-20671129 MS.gene060190:CDS 40.0%
ACTCATTCATAACCTGGAGG+GGG - chr2.3:20673416-20673435 MS.gene060190:intron 45.0%
AGCCTTGCAACCATGTACAT+TGG + chr2.3:20672112-20672131 None:intergenic 45.0%
ATCATGATCGATAAGGAGGG+TGG - chr2.3:20671664-20671683 MS.gene060190:intron 45.0%
CGATTCAGATCTCATGAACG+CGG - chr2.3:20670874-20670893 MS.gene060190:CDS 45.0%
CTCAAAATCCAACCACTGTG+TGG + chr2.3:20672045-20672064 None:intergenic 45.0%
GAACGCGGAATTCTATCTTC+TGG - chr2.3:20670889-20670908 MS.gene060190:CDS 45.0%
TCATGATCGATAAGGAGGGT+GGG - chr2.3:20671665-20671684 MS.gene060190:intron 45.0%
TCTTAGATGGATGTAGCGTG+CGG - chr2.3:20671753-20671772 MS.gene060190:intron 45.0%
TGCCAATGTACATGGTTGCA+AGG - chr2.3:20672107-20672126 MS.gene060190:intron 45.0%
TTTCTCCTATTCCCACACAG+TGG - chr2.3:20672030-20672049 MS.gene060190:intron 45.0%
! ACCTCCCCTGATTTTAGATC+AGG - chr2.3:20671793-20671812 MS.gene060190:intron 45.0%
! ATCAGGAGGTTTTCTTGTGG+TGG - chr2.3:20671810-20671829 MS.gene060190:intron 45.0%
! GCTTTTCACCTCATAAAGGG+CGG - chr2.3:20671724-20671743 MS.gene060190:intron 45.0%
! TCCCCTGATTTTAGATCAGG+AGG - chr2.3:20671796-20671815 MS.gene060190:intron 45.0%
! TCCTGATCTAAAATCAGGGG+AGG + chr2.3:20671797-20671816 None:intergenic 45.0%
! TCTGATGGATGCTAGCACAT+TGG + chr2.3:20673159-20673178 None:intergenic 45.0%
ACATTTGGAAAGTCTCCGGC+AGG + chr2.3:20673560-20673579 None:intergenic 50.0%
AGGGCGGTCTGTATCTTAGA+TGG - chr2.3:20671740-20671759 MS.gene060190:intron 50.0%
ATATTTCGAGCCAGCTTCCG+TGG + chr2.3:20671071-20671090 None:intergenic 50.0%
CATTTGGAAAGTCTCCGGCA+GGG + chr2.3:20673559-20673578 None:intergenic 50.0%
CTCATTCATAACCTGGAGGG+GGG - chr2.3:20673417-20673436 MS.gene060190:intron 50.0%
GATACAGACCGCCCTTTATG+AGG + chr2.3:20671735-20671754 None:intergenic 50.0%
TCCAACCACTGTGTGGGAAT+AGG + chr2.3:20672038-20672057 None:intergenic 50.0%
TCCTATTCCCACACAGTGGT+TGG - chr2.3:20672034-20672053 MS.gene060190:intron 50.0%
TCTTTGTCCAATGTCTGGGC+TGG - chr2.3:20672180-20672199 MS.gene060190:intron 50.0%
! GGCTGTTTGGGGACTGTTTT+TGG - chr2.3:20670986-20671005 MS.gene060190:intron 50.0%
!! GCTCGAGAGTAGTTTTGCAC+AGG - chr2.3:20671503-20671522 MS.gene060190:intron 50.0%
!! GCTGGACGGATTGTGAATTG+TGG - chr2.3:20671420-20671439 MS.gene060190:intron 50.0%
CGTTTGTCCAGCCCAGACAT+TGG + chr2.3:20672190-20672209 None:intergenic 55.0%
CTGGAGGGGGGAATTCACAA+AGG - chr2.3:20673429-20673448 MS.gene060190:intron 55.0%
CTTTGTGAATTCCCCCCTCC+AGG + chr2.3:20673431-20673450 None:intergenic 55.0%
GGAGTTCTATCTCTCCCTGC+CGG - chr2.3:20673542-20673561 MS.gene060190:intron 55.0%
CGGCGTAGACGCTCAGCTCA+GGG + chr2.3:20670832-20670851 None:intergenic 65.0%
TCGGCGTAGACGCTCAGCTC+AGG + chr2.3:20670833-20670852 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 20670815 20673715 20670815 ID=MS.gene060190
chr2.3 mRNA 20670815 20673715 20670815 ID=MS.gene060190.t1;Parent=MS.gene060190
chr2.3 exon 20673568 20673715 20673568 ID=MS.gene060190.t1.exon1;Parent=MS.gene060190.t1
chr2.3 CDS 20673568 20673715 20673568 ID=cds.MS.gene060190.t1;Parent=MS.gene060190.t1
chr2.3 exon 20673430 20673496 20673430 ID=MS.gene060190.t1.exon2;Parent=MS.gene060190.t1
chr2.3 CDS 20673430 20673496 20673430 ID=cds.MS.gene060190.t1;Parent=MS.gene060190.t1
chr2.3 exon 20671869 20671989 20671869 ID=MS.gene060190.t1.exon3;Parent=MS.gene060190.t1
chr2.3 CDS 20671869 20671989 20671869 ID=cds.MS.gene060190.t1;Parent=MS.gene060190.t1
chr2.3 exon 20671080 20671224 20671080 ID=MS.gene060190.t1.exon4;Parent=MS.gene060190.t1
chr2.3 CDS 20671080 20671224 20671080 ID=cds.MS.gene060190.t1;Parent=MS.gene060190.t1
chr2.3 exon 20670815 20670996 20670815 ID=MS.gene060190.t1.exon5;Parent=MS.gene060190.t1
chr2.3 CDS 20670815 20670996 20670815 ID=cds.MS.gene060190.t1;Parent=MS.gene060190.t1
Gene Sequence

>MS.gene060190

ATGGGTTTTTCGAACCCTGAGCTGAGCGTCTACGCCGACAAGTTCGTTAACATGTTGCACGATTCAGATCTCATGAACGCGGAATTCTATCTTCTGGATATTGAAGGCTGGCGAGCGAAAATGCTACTCAATCCGAATAGTTTTGTAGGTAATGATGATTAAACTAATTTGGGCTGTTTGGGGACTGTTTTTGGATGAATTTTGACATGTTTCATGCAGGAAAATTGGGTCAAATCTGCAGAATTGTAATTTTCCACGGAAGCTGGCTCGAAATATTTGATCTTAGGTGCATTTTCCTCTGGAATCTAACTGTTTAGGTACGAACGGACAACTACCGATAACTAAAAATATCCTTTCTTAGCTTAGAATGTTTTATATATCCTTTCTTAGCTTAGAAGGTTTTATATATTTGTTTTAAATATTGAATCAAAATTGCAAATGTGTGCTTTATACTATTTAAACTTATAATATATTGATTTAGTTCTTTCATATATACATGTGTTTCAATCTTTGCCATCTAACTTTCTCTTTTTGGCTATTCATGATTGTACATTCAACCTAAGATACGAGTTCAAATACTCAAAATGTACTTAAAGGTCTTCTTTGCTGGACGGATTGTGAATTGTGGCCTTCTTTACTCTCTTATTCTGGGTTTGGCAATGTAGATTGTATGTAACATGACTATATTGCTCGAGAGTAGTTTTGCACAGGTGCTACTATGTTGTGAATAGATACCCTTCTTATCTCTACCCTTCTCTTCTATTGGATTTATTAATAACAATTTGAACCTTAAATGAACTCACCGGAAATTGTAATGTACTCCATAATTTTCATGTGCTTTAGTATTGAATCATGATCGATAAGGAGGGTGGGAAAAGATAAATTTTTTGTTTTCTGTTCTATTTAAACGCTTTTCACCTCATAAAGGGCGGTCTGTATCTTAGATGGATGTAGCGTGCGGTTTTTAGCTCAGTTTGTACCTCCCCTGATTTTAGATCAGGAGGTTTTCTTGTGGTGGTGTTCTGTTGTCAAAAAATGGATCTCTCTACTGTTGTACCTAATAAAAGTGGTAGGGGAATATAAGGAAGTTTTTAGATCATTCTAAAACTGAATTTGAAAAATTGTTTGAGTAAAAATTCTCACTATAAGTTTGCACTTTAAGTCATCTAGAGGGTTTTTGCTTCGGTATTTTCCTTCTGGGCAAAGACAATTCAATTTCTCCTATTCCCACACAGTGGTTGGATTTTGAGTTATTCTGTAGTGTGTGGAATAAGTTGCATTCGTTATAAGTATGCCAATGTACATGGTTGCAAGGCTCTCCAAGACAAAATATTGACAAGAGGTGGCATTGGTCTTGAAATGTTATCTTTGTCCAATGTCTGGGCTGGACAAACGATTTAAATATATCCATATGGCATAACTGCCTATCATATAAGTGTGTATATATAAAGATATTTCTATAATTATATATAAAATAAAGTCAAACTATTTTCACATAATCTTAAATTGTTTTCATAAACTATCTTTTAGAGCTTTTGGAAATAAGATGATAGCAATTTATAGACATGTCATACGCAAACAGTCTCATAAGTGCTTATGACACTATTTATTTATGCTCATATAAATCAATCCGAACAGACCCAAGATTTTCTTTGTTATTATTTTTATTGTTGTTGTTTAAATTTAGATGTGATTAGAATCTTGTGACATTGCCTTATATTGGCAGATCCTTCAATGATCAGCCTGTAAACAACATTGGTGTACTTGGCAATGAAGTCTTTAAAAGAGAACATGATGACCTTCTTACATATCTAAAAGATATACCAAAGAAGGCTTGTGATCATAAAGTAAGTTTTTCATTTGATTAAATTTTTTAAGCATAATGCTTTTCTCAATGTAAATATTACACACATGTGCAATTTTTTTACCTAAATTCTATGATGAGATACATTTGTGGGGTGAGTTTTGAAGTATAACCACATAAGTTGAAAGATAATTGGCATGTACTTTTTAGTATATTTGGTGGGAAAACATTAATAAAAGGATTGATGTACCTACCACATTTTGTACCATGTTATGCAAATTTTTGTTGTGTTATTGATTTCATAGTTGTTGTGGATCCAATCTCTAGAATTTCAGCTTAAAGTTAGTAACTACTCATGTTTTGTTATGTAAAAAAAAAAAAAAACTAATCATGTTTTGTTTTATCTATCTGTTTTCTTAAGAAATTAATATGGGAGGAGGAATGATATTTTATTTAGTGTGAAGGGGTAGACACTTCACACATAGTCTACAAGTTGAACTTAAATCTGCCCTTTTAGATTATAAATCTAAGCAATTACCAATGTGCTAGCATCCATCAGAGTTTGAACTGAAATCAGCCTCTTTAGATTACATGCCAAGCAGTTACCACTATGCTAACATTTAATATTTTTATTTTATCTATTGAAGTTACATTTCTTGGTAATTAAGATAACACCTATACATGTAGATCAATGAATTTGTAAAACGAGCTCGAGCTGCCAAAATACATGTATATATTATCAGTCAACTGAAAAAGCAAATGCCTATCGTGATAGGGAAAGCTAAAGTTCAACAAAAACTCATTCATAACCTGGAGGGGGGAATTCACAAAGGTATAAATCCACAAACAACTCTTTAATTACTCACTTATTGTTATGATACTGATAAAGAATGAAAATCGAAACACGTGTTACAGGTACAAAGGGAGTTCTATCTCTCCCTGCCGGAGACTTTCCAAATGTTGATCATTTCAAAGAGGTGTTGAGTGTTTATAACATCGACAAGTTTGAGAAATTGAGACCGAAAATAATACAAGTTGTGGATGACATGCTTTCTCACGACATTCCTAATCTCTTAAAGACTTTTAGTAATCCATAA
Protein sequence

>MS.gene060190.t1

MGFSNPELSVYADKFVNMLHDSDLMNAEFYLLDIEGWRAKMLLNPNSFVGKLGQICRIVIFHGSWLEIFDLRSFNDQPVNNIGVLGNEVFKREHDDLLTYLKDIPKKACDHKINEFVKRARAAKIHVYIISQLKKQMPIVIGKAKVQQKLIHNLEGGIHKGTKGVLSLPAGDFPNVDHFKEVLSVYNIDKFEKLRPKIIQVVDDMLSHDIPNLLKTFSNP