Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060250.t1 | XP_003615896.2 | 61 | 313 | 103 | 7 | 2 | 303 | 472 | 776 | 4.10E-93 | 352.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060250.t1 | Q9FGH9 | 53.0 | 134 | 54 | 1 | 1 | 125 | 378 | 511 | 8.6e-31 | 136.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060250.t1 | G7JZS8 | 61.0 | 313 | 103 | 7 | 2 | 303 | 472 | 776 | 3.0e-93 | 352.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene060250.t1 | TF | WRKY |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060250 | MS.gene67250 | 0.828271 | 9.86E-55 | -1.69E-46 |
| MS.gene060250 | MS.gene67251 | 0.871303 | 7.58E-67 | -1.69E-46 |
| MS.gene060250 | MS.gene99726 | 0.807243 | 5.56E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060250.t1 | MTR_5g073620 | 61.022 | 313 | 103 | 7 | 2 | 303 | 472 | 776 | 5.22e-116 | 366 |
| MS.gene060250.t1 | MTR_5g073450 | 47.904 | 167 | 65 | 2 | 1 | 149 | 383 | 545 | 3.71e-36 | 141 |
| MS.gene060250.t1 | MTR_3g031130 | 49.650 | 143 | 54 | 1 | 1 | 125 | 376 | 518 | 5.21e-34 | 135 |
| MS.gene060250.t1 | MTR_5g073460 | 44.444 | 144 | 60 | 2 | 1 | 124 | 440 | 583 | 1.14e-25 | 110 |
| MS.gene060250.t1 | MTR_5g067680 | 50.000 | 90 | 41 | 2 | 182 | 271 | 188 | 273 | 1.42e-22 | 99.4 |
| MS.gene060250.t1 | MTR_6g033310 | 32.353 | 136 | 63 | 2 | 17 | 123 | 480 | 615 | 7.24e-19 | 90.1 |
| MS.gene060250.t1 | MTR_5g073820 | 59.259 | 81 | 18 | 1 | 2 | 82 | 368 | 433 | 3.99e-17 | 84.0 |
| MS.gene060250.t1 | MTR_1g090620 | 38.938 | 113 | 62 | 1 | 19 | 124 | 405 | 517 | 4.40e-16 | 81.3 |
| MS.gene060250.t1 | MTR_1g057560 | 37.168 | 113 | 64 | 1 | 19 | 124 | 399 | 511 | 5.98e-16 | 80.9 |
| MS.gene060250.t1 | MTR_7g026630 | 33.077 | 130 | 62 | 2 | 18 | 122 | 411 | 540 | 9.35e-15 | 77.0 |
| MS.gene060250.t1 | MTR_7g013770 | 27.607 | 163 | 84 | 2 | 17 | 149 | 424 | 582 | 6.68e-14 | 74.7 |
| MS.gene060250.t1 | MTR_5g074130 | 37.168 | 113 | 60 | 1 | 13 | 114 | 444 | 556 | 2.03e-13 | 73.2 |
| MS.gene060250.t1 | MTR_5g093530 | 30.719 | 153 | 91 | 2 | 13 | 154 | 364 | 512 | 4.24e-13 | 72.0 |
| MS.gene060250.t1 | MTR_5g073480 | 48.052 | 77 | 21 | 1 | 20 | 77 | 460 | 536 | 3.85e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060250.t1 | AT1G07000 | 43.284 | 134 | 67 | 1 | 1 | 125 | 362 | 495 | 4.81e-29 | 120 |
| MS.gene060250.t1 | AT5G58430 | 52.985 | 134 | 54 | 1 | 1 | 125 | 378 | 511 | 5.35e-28 | 117 |
| MS.gene060250.t1 | AT5G13990 | 35.000 | 140 | 74 | 2 | 2 | 124 | 434 | 573 | 7.74e-20 | 93.2 |
| MS.gene060250.t1 | AT5G13150 | 33.577 | 137 | 61 | 3 | 18 | 124 | 400 | 536 | 1.73e-17 | 85.9 |
| MS.gene060250.t1 | AT2G40740 | 35.156 | 128 | 77 | 4 | 155 | 281 | 133 | 255 | 8.28e-17 | 81.3 |
| MS.gene060250.t1 | AT2G40740 | 35.156 | 128 | 77 | 4 | 155 | 281 | 142 | 264 | 8.81e-17 | 81.3 |
| MS.gene060250.t1 | AT5G03540 | 37.931 | 116 | 64 | 2 | 17 | 124 | 282 | 397 | 1.26e-16 | 82.8 |
| MS.gene060250.t1 | AT5G03540 | 37.931 | 116 | 64 | 2 | 17 | 124 | 397 | 512 | 1.51e-16 | 82.8 |
| MS.gene060250.t1 | AT5G03540 | 37.931 | 116 | 64 | 2 | 17 | 124 | 423 | 538 | 2.13e-16 | 82.4 |
| MS.gene060250.t1 | AT5G50380 | 34.586 | 133 | 72 | 3 | 19 | 136 | 432 | 564 | 2.07e-15 | 79.3 |
| MS.gene060250.t1 | AT5G52340 | 37.391 | 115 | 65 | 1 | 17 | 124 | 397 | 511 | 1.42e-14 | 76.6 |
| MS.gene060250.t1 | AT5G61010 | 36.842 | 114 | 52 | 2 | 18 | 111 | 403 | 516 | 6.34e-13 | 71.6 |
| MS.gene060250.t1 | AT5G61010 | 36.842 | 114 | 52 | 2 | 18 | 111 | 403 | 516 | 6.34e-13 | 71.6 |
| MS.gene060250.t1 | AT5G22570 | 31.250 | 80 | 52 | 1 | 198 | 277 | 111 | 187 | 7.42e-11 | 63.5 |
Find 124 sgRNAs with CRISPR-Local
Find 298 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAAAGATGCGTAGGATTA+TGG | 0.226100 | 5.4:-60103937 | MS.gene060250:CDS |
| TCCAGGAAAACCCGTCTTTC+GGG | 0.242613 | 5.4:+60102521 | None:intergenic |
| AAGTTGTTGTACTTTCTTCT+TGG | 0.253122 | 5.4:+60102018 | None:intergenic |
| GAAAACACACTCTGAAAGTT+TGG | 0.271307 | 5.4:-60103767 | MS.gene060250:CDS |
| GGGAGTTGCGTTTAAGATTT+GGG | 0.283868 | 5.4:-60100560 | MS.gene060250:CDS |
| TCTATTTCTTGCACATTTCC+TGG | 0.289570 | 5.4:+60103639 | None:intergenic |
| TATCTTGCCATGTTCTTTCC+AGG | 0.290552 | 5.4:+60102504 | None:intergenic |
| TTCCAGGAAAACCCGTCTTT+CGG | 0.295860 | 5.4:+60102520 | None:intergenic |
| TGGGAGTTGCGTTTAAGATT+TGG | 0.298653 | 5.4:-60100561 | MS.gene060250:CDS |
| GGTTCCTAGCTCATTATCTT+TGG | 0.299296 | 5.4:+60103812 | None:intergenic |
| TTTATCACATGTTGGGTAAT+CGG | 0.316816 | 5.4:+60104026 | None:intergenic |
| ATCTATCCTGCGCAGCAGTT+TGG | 0.338903 | 5.4:-60102562 | MS.gene060250:CDS |
| TGACTTTGATGAGGAGATAT+TGG | 0.340568 | 5.4:-60100666 | MS.gene060250:intron |
| GGACATATTGGAGAGTAGTT+TGG | 0.346666 | 5.4:-60103916 | MS.gene060250:CDS |
| TCGTTAGGTATTCCAATGTT+TGG | 0.350870 | 5.4:+60101001 | None:intergenic |
| TAATGAGCTAGGAACCCTTT+TGG | 0.352948 | 5.4:-60103805 | MS.gene060250:CDS |
| TATCTTACTTCAAACACGTT+TGG | 0.358977 | 5.4:+60101986 | None:intergenic |
| TCTATCCTGCGCAGCAGTTT+GGG | 0.373684 | 5.4:-60102561 | MS.gene060250:CDS |
| CTCTTATGTAGTGAGGTTGT+GGG | 0.374810 | 5.4:-60100841 | MS.gene060250:intron |
| ACACTTTCTCTAATGTTATC+CGG | 0.378588 | 5.4:+60103979 | None:intergenic |
| TGCTACAAAGACCCTTCTTT+AGG | 0.390292 | 5.4:-60103879 | MS.gene060250:CDS |
| CATTGTTAAGGACATGTTGC+AGG | 0.400146 | 5.4:+60101949 | None:intergenic |
| GGCACGACAACCAATGGATA+TGG | 0.416229 | 5.4:-60101909 | MS.gene060250:CDS |
| GCGTAGGATTATGGACATAT+TGG | 0.420319 | 5.4:-60103928 | MS.gene060250:CDS |
| TGTTTCCTCACCTGGTGTGC+TGG | 0.421137 | 5.4:+60101826 | None:intergenic |
| TAGATTTCATCGGGTTTAAG+AGG | 0.421325 | 5.4:-60100488 | MS.gene060250:CDS |
| AAAACACACTCTGAAAGTTT+GGG | 0.422610 | 5.4:-60103766 | MS.gene060250:CDS |
| ATCAATTAACAATAGGAGAA+AGG | 0.424085 | 5.4:-60102614 | MS.gene060250:intron |
| TTATCACATGTTGGGTAATC+GGG | 0.424629 | 5.4:+60104027 | None:intergenic |
| TGCGTTTAAGATTTGGGTGG+TGG | 0.426451 | 5.4:-60100554 | MS.gene060250:CDS |
| AAATAATGATGGCATTGTTA+AGG | 0.432410 | 5.4:+60101937 | None:intergenic |
| CGGGTTTAAGAGGGTGTTGA+AGG | 0.439501 | 5.4:-60100478 | MS.gene060250:CDS |
| GTGGTGGGAAATGATGTTTA+AGG | 0.439515 | 5.4:-60100785 | MS.gene060250:CDS |
| TCTCTTATGTAGTGAGGTTG+TGG | 0.445073 | 5.4:-60100842 | MS.gene060250:intron |
| AAATGGTATGGATCCAAGTA+AGG | 0.445189 | 5.4:-60100723 | MS.gene060250:CDS |
| TCCCCAAACAAAACATGTAA+AGG | 0.446630 | 5.4:+60100694 | None:intergenic |
| CACTTTCTCTAATGTTATCC+GGG | 0.453501 | 5.4:+60103980 | None:intergenic |
| AAAACATGTGGTGGAGGCAT+AGG | 0.454531 | 5.4:-60100187 | None:intergenic |
| CAAACACTGGTCGCCGCAGC+TGG | 0.458232 | 5.4:-60100758 | MS.gene060250:CDS |
| CCCCAAACAAAACATGTAAA+GGG | 0.460298 | 5.4:+60100695 | None:intergenic |
| TCAATTAACAATAGGAGAAA+GGG | 0.460658 | 5.4:-60102613 | MS.gene060250:intron |
| TCCGTGTAGTTTGTCGATCC+CGG | 0.463303 | 5.4:-60103998 | MS.gene060250:CDS |
| GGTTGAAGGCATCTTTGATA+AGG | 0.464737 | 5.4:-60100454 | MS.gene060250:CDS |
| TAACAATAGGAGAAAGGGAT+TGG | 0.467666 | 5.4:-60102608 | MS.gene060250:intron |
| GATCGTCTTCTATCTGATTG+AGG | 0.468131 | 5.4:-60104075 | MS.gene060250:CDS |
| TGGGTGAAAATCAAGGTTAT+GGG | 0.470147 | 5.4:-60100580 | MS.gene060250:intron |
| CGCTCTAACAAAGGAAAGGA+AGG | 0.474104 | 5.4:-60100262 | MS.gene060250:CDS |
| TCCTCTAACACTTATTCGTT+AGG | 0.474241 | 5.4:+60100986 | None:intergenic |
| AAGGATGTTGATATTGTCAT+TGG | 0.476017 | 5.4:-60100435 | MS.gene060250:CDS |
| AAGGAAATACAGCCTAAAGA+AGG | 0.477993 | 5.4:+60103867 | None:intergenic |
| GTGGTTTATGTAGGGAATGG+AGG | 0.483489 | 5.4:-60101027 | MS.gene060250:intron |
| GTAAAGGGATACCCCTTACT+TGG | 0.485688 | 5.4:+60100710 | None:intergenic |
| ACTTTCTTCTTGGCTCTACA+AGG | 0.486386 | 5.4:+60102028 | None:intergenic |
| GAGGTAGTTTATCACATGTT+GGG | 0.489990 | 5.4:+60104019 | None:intergenic |
| AGGGTGTTGAAGGTGGTTGA+AGG | 0.492281 | 5.4:-60100468 | MS.gene060250:CDS |
| ATACGTGTTGTTATTCATCA+AGG | 0.493917 | 5.4:+60103848 | None:intergenic |
| ATATCCATTGGTTGTCGTGC+CGG | 0.498412 | 5.4:+60101911 | None:intergenic |
| CACTCTCGCAACCAGGAGAA+AGG | 0.499437 | 5.4:-60103608 | MS.gene060250:intron |
| TGGTGGGAAATGATGTTTAA+GGG | 0.499874 | 5.4:-60100784 | MS.gene060250:CDS |
| ATGGTTTCAGCCATATCCAT+TGG | 0.501633 | 5.4:+60101899 | None:intergenic |
| AAACATGTGGTGGAGGCATA+GGG | 0.508564 | 5.4:-60100186 | None:intergenic |
| GTGTTCCCAAACTGCTGCGC+AGG | 0.509319 | 5.4:+60102556 | None:intergenic |
| GAATCAGTTCGCTCTAACAA+AGG | 0.510405 | 5.4:-60100271 | MS.gene060250:CDS |
| TGGCTTTCATCCAGCACACC+AGG | 0.511943 | 5.4:-60101836 | MS.gene060250:intron |
| TTGGGTGGTGGAAGATTCAA+AGG | 0.512127 | 5.4:-60100542 | MS.gene060250:CDS |
| ACTTCAACCAGCACCAACTT+CGG | 0.524750 | 5.4:-60101867 | MS.gene060250:CDS |
| CATGGCAAGATAGAGATGCC+TGG | 0.525543 | 5.4:-60102493 | MS.gene060250:CDS |
| AACAAAGGAAAGGAAGGGTG+TGG | 0.526568 | 5.4:-60100256 | MS.gene060250:CDS |
| AATGCCATCATTATTTGTAC+CGG | 0.531553 | 5.4:-60101930 | MS.gene060250:CDS |
| GCTGGTGGCAAACAATCAAA+TGG | 0.531970 | 5.4:-60100740 | MS.gene060250:CDS |
| TGGCAAACAATCAAATGGTA+TGG | 0.532953 | 5.4:-60100735 | MS.gene060250:CDS |
| GAATGGAGGTTTCCAAACAT+TGG | 0.533592 | 5.4:-60101013 | MS.gene060250:CDS |
| GGAGGTAGTTTATCACATGT+TGG | 0.534608 | 5.4:+60104018 | None:intergenic |
| GTTTAAGAGGGTGTTGAAGG+TGG | 0.536027 | 5.4:-60100475 | MS.gene060250:CDS |
| ATAATCTTGCATTTGAGTGA+AGG | 0.539806 | 5.4:+60103704 | None:intergenic |
| CAATAGGAGAAAGGGATTGG+AGG | 0.540155 | 5.4:-60102605 | MS.gene060250:intron |
| AGAGAATCCGAAGTTGGTGC+TGG | 0.544283 | 5.4:+60101860 | None:intergenic |
| GTAGGAACAAATGTGAATCC+AGG | 0.547847 | 5.4:-60103657 | MS.gene060250:CDS |
| GGGATTTATTGACTTTGATG+AGG | 0.554184 | 5.4:-60100675 | MS.gene060250:CDS |
| ATGACCAAAGATAATGAGCT+AGG | 0.557428 | 5.4:-60103816 | MS.gene060250:CDS |
| GCGTCGTCACTCTCGCAACC+AGG | 0.559853 | 5.4:-60103615 | MS.gene060250:CDS |
| AGCCACAGAGAATCCGAAGT+TGG | 0.562404 | 5.4:+60101854 | None:intergenic |
| ATGGCAAGATAGAGATGCCT+GGG | 0.564861 | 5.4:-60102492 | MS.gene060250:CDS |
| GAAGATTCAAAGGAAAAGCT+CGG | 0.567185 | 5.4:-60100532 | MS.gene060250:CDS |
| ACACTGGTCGCCGCAGCTGG+TGG | 0.568838 | 5.4:-60100755 | MS.gene060250:CDS |
| AAATGCAATGAAGGAGTGGT+GGG | 0.570493 | 5.4:-60100800 | MS.gene060250:CDS |
| GTGAGGAAGATGATAGTGAC+AGG | 0.570765 | 5.4:-60100413 | MS.gene060250:intron |
| CCAGGAAAACCCGTCTTTCG+GGG | 0.571899 | 5.4:+60102522 | None:intergenic |
| TGATTGTTTGCCACCAGCTG+CGG | 0.572084 | 5.4:+60100745 | None:intergenic |
| CGTGCCGGTACAAATAATGA+TGG | 0.572426 | 5.4:+60101926 | None:intergenic |
| TGGTTGAAGTTCAGCCGTGA+TGG | 0.575165 | 5.4:+60101880 | None:intergenic |
| CAGGAAAACCCGTCTTTCGG+GGG | 0.576144 | 5.4:+60102523 | None:intergenic |
| CTGATTGAGGTCACAAATGT+TGG | 0.577700 | 5.4:-60104062 | MS.gene060250:CDS |
| TAATAGAAAACATGTGGTGG+AGG | 0.581000 | 5.4:-60100193 | MS.gene060250:CDS |
| TGTACCGGCACGACAACCAA+TGG | 0.583711 | 5.4:-60101915 | MS.gene060250:CDS |
| AGATTTCATCGGGTTTAAGA+GGG | 0.590406 | 5.4:-60100487 | MS.gene060250:CDS |
| AAGATTCAAAGGAAAAGCTC+GGG | 0.592276 | 5.4:-60100531 | MS.gene060250:CDS |
| AGGAAATACAGCCTAAAGAA+GGG | 0.592461 | 5.4:+60103868 | None:intergenic |
| AAAATGCAATGAAGGAGTGG+TGG | 0.595984 | 5.4:-60100801 | MS.gene060250:CDS |
| GAGGTCACAAATGTTGGTGG+CGG | 0.601506 | 5.4:-60104056 | MS.gene060250:CDS |
| AATGGTATGGATCCAAGTAA+GGG | 0.601763 | 5.4:-60100722 | MS.gene060250:CDS |
| AGTTCGCTCTAACAAAGGAA+AGG | 0.602046 | 5.4:-60100266 | MS.gene060250:CDS |
| CACTTTCTGAAAAGATGCGT+AGG | 0.604839 | 5.4:-60103944 | MS.gene060250:CDS |
| CGATAATAGAAAACATGTGG+TGG | 0.605351 | 5.4:-60100196 | MS.gene060250:CDS |
| GGTGGGAAATGATGTTTAAG+GGG | 0.606652 | 5.4:-60100783 | MS.gene060250:CDS |
| CACCAACTTCGGATTCTCTG+TGG | 0.608745 | 5.4:-60101856 | MS.gene060250:CDS |
| ATTGAGGTCACAAATGTTGG+TGG | 0.609618 | 5.4:-60104059 | MS.gene060250:CDS |
| TCCGGGATCGACAAACTACA+CGG | 0.614884 | 5.4:+60103997 | None:intergenic |
| GAAAAGCTCGGGAGGTGACG+AGG | 0.616293 | 5.4:-60100520 | MS.gene060250:CDS |
| TCTTATGTAGTGAGGTTGTG+GGG | 0.626887 | 5.4:-60100840 | MS.gene060250:intron |
| AAGAAGAAAGTACAACAACT+TGG | 0.631862 | 5.4:-60102016 | MS.gene060250:CDS |
| TGTTTAAGGGGATCAAACAC+TGG | 0.639913 | 5.4:-60100771 | MS.gene060250:CDS |
| TAGCGATAATAGAAAACATG+TGG | 0.641882 | 5.4:-60100199 | MS.gene060250:CDS |
| TATGTAGTGAGGTTGTGGGG+TGG | 0.642015 | 5.4:-60100837 | MS.gene060250:intron |
| AGTTGCGTTTAAGATTTGGG+TGG | 0.648517 | 5.4:-60100557 | MS.gene060250:CDS |
| ATGGTATGGATCCAAGTAAG+GGG | 0.655180 | 5.4:-60100721 | MS.gene060250:CDS |
| TACCTCAGGTATTTGAACCC+AGG | 0.658706 | 5.4:+60102475 | None:intergenic |
| TGTTGATATTGTCATTGGTG+AGG | 0.670274 | 5.4:-60100430 | MS.gene060250:CDS |
| ATTCAAAGGAAAAGCTCGGG+AGG | 0.671847 | 5.4:-60100528 | MS.gene060250:CDS |
| GGATATGGCTGAAACCATCA+CGG | 0.672090 | 5.4:-60101894 | MS.gene060250:CDS |
| GCTCTAACAAAGGAAAGGAA+GGG | 0.674430 | 5.4:-60100261 | MS.gene060250:CDS |
| TGCCTGGGTTCAAATACCTG+AGG | 0.686633 | 5.4:-60102477 | MS.gene060250:intron |
| GTGTTTGAAGTAAGATACAG+TGG | 0.702689 | 5.4:-60101980 | MS.gene060250:CDS |
| GGGATCGACAAACTACACGG+AGG | 0.829211 | 5.4:+60104000 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTATTATATTATAAATAT+AGG | - | chr5.4:60102691-60102710 | MS.gene060250:intron | 0.0% |
| !! | TTATTATATTATTATAAATT+TGG | - | chr5.4:60102534-60102553 | MS.gene060250:CDS | 0.0% |
| !! | TTTATTATATTATAAATATA+GGG | - | chr5.4:60102692-60102711 | MS.gene060250:intron | 0.0% |
| !! | CTCAAAAATTTAAAAAATAT+AGG | - | chr5.4:60102618-60102637 | MS.gene060250:intron | 10.0% |
| !!! | CTATATTTTTTAAATTTTTG+AGG | + | chr5.4:60102620-60102639 | None:intergenic | 10.0% |
| !! | AATCTCACAAATATTAAAAA+TGG | - | chr5.4:60100820-60100839 | MS.gene060250:CDS | 15.0% |
| !! | CAAAATCACAATATATTAAA+AGG | - | chr5.4:60102779-60102798 | MS.gene060250:intron | 15.0% |
| !! | TAACAAAATTAATTCCTTAA+TGG | + | chr5.4:60101839-60101858 | None:intergenic | 15.0% |
| !! | TTGAAATGTATTAATGTAAA+AGG | - | chr5.4:60101186-60101205 | MS.gene060250:intron | 15.0% |
| !!! | AAAACAAGTATCATTTTTTA+TGG | + | chr5.4:60103119-60103138 | None:intergenic | 15.0% |
| !!! | AAATCCATTTAGTAATTTTT+CGG | - | chr5.4:60101217-60101236 | MS.gene060250:intron | 15.0% |
| !!! | AGTTCAAATAAGTTTTTTTT+AGG | - | chr5.4:60100720-60100739 | MS.gene060250:CDS | 15.0% |
| !!! | ATAAAAAATGATACTTGTTT+TGG | - | chr5.4:60103118-60103137 | MS.gene060250:intron | 15.0% |
| !!! | ATCTCACTTTTTTTTTTTTA+AGG | + | chr5.4:60100858-60100877 | None:intergenic | 15.0% |
| !!! | ATTTGCTTTTTAATTAGTTT+TGG | - | chr5.4:60101557-60101576 | MS.gene060250:intron | 15.0% |
| !!! | ATTTTTAATATTTGTGAGAT+TGG | + | chr5.4:60100821-60100840 | None:intergenic | 15.0% |
| !!! | CTTTTAATATATTGTGATTT+TGG | + | chr5.4:60102781-60102800 | None:intergenic | 15.0% |
| !!! | GTTCAAATAAGTTTTTTTTA+GGG | - | chr5.4:60100721-60100740 | MS.gene060250:CDS | 15.0% |
| !!! | TTTTTTATTTCTTGTTCAAT+CGG | + | chr5.4:60100913-60100932 | None:intergenic | 15.0% |
| !! | AAAAATTCTCAACAAACTAA+TGG | - | chr5.4:60102127-60102146 | MS.gene060250:intron | 20.0% |
| !! | AATTCCGAAAAATTACTAAA+TGG | + | chr5.4:60101224-60101243 | None:intergenic | 20.0% |
| !! | ACTATATGTATATATACATG+TGG | - | chr5.4:60102076-60102095 | MS.gene060250:intron | 20.0% |
| !! | AGATCATGATAATATATTGT+AGG | + | chr5.4:60101599-60101618 | None:intergenic | 20.0% |
| !! | CAAATTGATTATTGTTGAAA+TGG | - | chr5.4:60101035-60101054 | MS.gene060250:intron | 20.0% |
| !! | TATTTGCAGTCAAAAAATTA+TGG | - | chr5.4:60100596-60100615 | MS.gene060250:intron | 20.0% |
| !! | TCTTCATATCAATTAACAAT+AGG | - | chr5.4:60101659-60101678 | MS.gene060250:intron | 20.0% |
| !! | TTAAATCTAGTCAACATTTA+AGG | - | chr5.4:60101516-60101535 | MS.gene060250:intron | 20.0% |
| !!! | AACTTCAAAGATATCATTTT+GGG | + | chr5.4:60102651-60102670 | None:intergenic | 20.0% |
| !!! | AATAGTTGGCAAATTTTAAT+TGG | - | chr5.4:60102847-60102866 | MS.gene060250:intron | 20.0% |
| !!! | AGAATTTTTCAAGAAATAGT+TGG | - | chr5.4:60102833-60102852 | MS.gene060250:intron | 20.0% |
| !!! | AGATTGTTATTAAGATGTAA+AGG | - | chr5.4:60100932-60100951 | MS.gene060250:intron | 20.0% |
| !!! | AGTAATTTTTCGGAATTATT+AGG | - | chr5.4:60101227-60101246 | MS.gene060250:intron | 20.0% |
| !!! | ATAAAAGGTGTATTGTATTT+AGG | - | chr5.4:60101900-60101919 | MS.gene060250:CDS | 20.0% |
| !!! | CACTTTTTTTTTTTTAAGGA+AGG | + | chr5.4:60100854-60100873 | None:intergenic | 20.0% |
| !!! | TAAAAGGTGTATTGTATTTA+GGG | - | chr5.4:60101901-60101920 | MS.gene060250:CDS | 20.0% |
| !!! | TAACTTCAAAGATATCATTT+TGG | + | chr5.4:60102652-60102671 | None:intergenic | 20.0% |
| !!! | TAGTACTTAATTGTTTTGTA+TGG | + | chr5.4:60103353-60103372 | None:intergenic | 20.0% |
| ! | AAAAAAACTCCTACATTTGT+AGG | + | chr5.4:60102579-60102598 | None:intergenic | 25.0% |
| ! | AAACATTCTAGTGAATGATA+TGG | - | chr5.4:60103226-60103245 | MS.gene060250:intron | 25.0% |
| ! | AAATAATGATGGCATTGTTA+AGG | + | chr5.4:60102346-60102365 | None:intergenic | 25.0% |
| ! | AATGATTCCTATTATAAGTG+TGG | + | chr5.4:60103674-60103693 | None:intergenic | 25.0% |
| ! | ACAAATAAGTGGATACATAA+AGG | - | chr5.4:60101157-60101176 | MS.gene060250:intron | 25.0% |
| ! | ACTGGTATGTATTATTTACT+AGG | + | chr5.4:60102490-60102509 | None:intergenic | 25.0% |
| ! | AGAGATAGACGTATTATAAA+AGG | - | chr5.4:60101885-60101904 | MS.gene060250:CDS | 25.0% |
| ! | ATCAATTAACAATAGGAGAA+AGG | - | chr5.4:60101666-60101685 | MS.gene060250:intron | 25.0% |
| ! | CATATTATTGAACTCTACAT+AGG | + | chr5.4:60101489-60101508 | None:intergenic | 25.0% |
| ! | CCATAGACAATATCAAAAAA+CGG | - | chr5.4:60100541-60100560 | MS.gene060250:CDS | 25.0% |
| ! | GATATTCAATGAAACCTTAA+GGG | + | chr5.4:60101943-60101962 | None:intergenic | 25.0% |
| ! | GATGTTCTAATAACATGTAT+AGG | - | chr5.4:60100875-60100894 | MS.gene060250:intron | 25.0% |
| ! | TATAATATGTCACTCTGTAT+TGG | + | chr5.4:60103096-60103115 | None:intergenic | 25.0% |
| ! | TCAATTAACAATAGGAGAAA+GGG | - | chr5.4:60101667-60101686 | MS.gene060250:intron | 25.0% |
| ! | TGAAAAAAGTTATAAGCTAC+TGG | + | chr5.4:60102508-60102527 | None:intergenic | 25.0% |
| ! | TTGATTTCCACACTTATAAT+AGG | - | chr5.4:60103664-60103683 | MS.gene060250:CDS | 25.0% |
| ! | TTGGTTATGCTATTATGTAT+TGG | + | chr5.4:60103077-60103096 | None:intergenic | 25.0% |
| ! | TTTATGTATCCACTTATTTG+TGG | + | chr5.4:60101158-60101177 | None:intergenic | 25.0% |
| !! | AAAAGGTGTATTGTATTTAG+GGG | - | chr5.4:60101902-60101921 | MS.gene060250:CDS | 25.0% |
| !! | AAGTTTCAAATTTTCGTGAT+AGG | + | chr5.4:60102176-60102195 | None:intergenic | 25.0% |
| !! | ATGTATTGGTAAAGTTTAGT+CGG | + | chr5.4:60103063-60103082 | None:intergenic | 25.0% |
| !! | CTTTGAAGAAAAAAAAAGTG+AGG | + | chr5.4:60102755-60102774 | None:intergenic | 25.0% |
| !! | TTTTTACTACCTACAAATGT+AGG | - | chr5.4:60102567-60102586 | MS.gene060250:CDS | 25.0% |
| !!! | ACTTAATTGTTTTGTATGGA+AGG | + | chr5.4:60103349-60103368 | None:intergenic | 25.0% |
| !!! | ATTTTTCGGAATTATTAGGT+TGG | - | chr5.4:60101231-60101250 | MS.gene060250:intron | 25.0% |
| !!! | TTGAAACTTTTGTTTGTTTC+AGG | - | chr5.4:60102187-60102206 | MS.gene060250:intron | 25.0% |
| AACTACACTCGTCATAAAAA+TGG | - | chr5.4:60101440-60101459 | MS.gene060250:intron | 30.0% | |
| AAGGATGTTGATATTGTCAT+TGG | - | chr5.4:60103845-60103864 | MS.gene060250:CDS | 30.0% | |
| AAGTTGTTGTACTTTCTTCT+TGG | + | chr5.4:60102265-60102284 | None:intergenic | 30.0% | |
| AATAGGAATCATTTCTGAGT+GGG | - | chr5.4:60103681-60103700 | MS.gene060250:CDS | 30.0% | |
| AATGCCATCATTATTTGTAC+CGG | - | chr5.4:60102350-60102369 | MS.gene060250:intron | 30.0% | |
| AATGGTGTTTGAAAGTGAAA+AGG | - | chr5.4:60103971-60103990 | MS.gene060250:CDS | 30.0% | |
| ACACTTTCTCTAATGTTATC+CGG | + | chr5.4:60100304-60100323 | None:intergenic | 30.0% | |
| ACTACACACATCAATATTCA+TGG | - | chr5.4:60103369-60103388 | MS.gene060250:intron | 30.0% | |
| AGAAGCTAAAAATGCAATGA+AGG | - | chr5.4:60103471-60103490 | MS.gene060250:intron | 30.0% | |
| AGACAATATCAAAAAACGGA+GGG | - | chr5.4:60100545-60100564 | MS.gene060250:CDS | 30.0% | |
| ATAATCTTGCATTTGAGTGA+AGG | + | chr5.4:60100579-60100598 | None:intergenic | 30.0% | |
| ATTGATGAAAGGATTATCGA+AGG | - | chr5.4:60103947-60103966 | MS.gene060250:CDS | 30.0% | |
| CAATATCACTGAAAAATGCA+CGG | + | chr5.4:60102054-60102073 | None:intergenic | 30.0% | |
| CGATATTCAATGAAACCTTA+AGG | + | chr5.4:60101944-60101963 | None:intergenic | 30.0% | |
| GAAAAAAAAAGTGAGGAATC+CGG | + | chr5.4:60102748-60102767 | None:intergenic | 30.0% | |
| GAGTTGAAAAACTACTTTGT+GGG | - | chr5.4:60103315-60103334 | MS.gene060250:intron | 30.0% | |
| GATATGAAGACACAATCATT+AGG | + | chr5.4:60101649-60101668 | None:intergenic | 30.0% | |
| TAATAGGAATCATTTCTGAG+TGG | - | chr5.4:60103680-60103699 | MS.gene060250:CDS | 30.0% | |
| TAGACAATATCAAAAAACGG+AGG | - | chr5.4:60100544-60100563 | MS.gene060250:CDS | 30.0% | |
| TAGCGATAATAGAAAACATG+TGG | - | chr5.4:60104081-60104100 | MS.gene060250:CDS | 30.0% | |
| TAGGGATATTAATTGCAGTA+CGG | - | chr5.4:60102710-60102729 | MS.gene060250:intron | 30.0% | |
| TATCTTACTTCAAACACGTT+TGG | + | chr5.4:60102297-60102316 | None:intergenic | 30.0% | |
| TCAAAAAATTATGGTGTGGT+AGG | - | chr5.4:60100605-60100624 | MS.gene060250:intron | 30.0% | |
| TTTATCACATGTTGGGTAAT+CGG | + | chr5.4:60100257-60100276 | None:intergenic | 30.0% | |
| ! | AAAACACACTCTGAAAGTTT+GGG | - | chr5.4:60100514-60100533 | MS.gene060250:CDS | 30.0% |
| ! | AAACTTTCAGAGTGTGTTTT+CGG | + | chr5.4:60100514-60100533 | None:intergenic | 30.0% |
| ! | AAGAAGAAAGTACAACAACT+TGG | - | chr5.4:60102264-60102283 | MS.gene060250:intron | 30.0% |
| ! | ATACGTGTTGTTATTCATCA+AGG | + | chr5.4:60100435-60100454 | None:intergenic | 30.0% |
| ! | GTCTCTTTTGTAGATTTCAT+CGG | - | chr5.4:60103782-60103801 | MS.gene060250:CDS | 30.0% |
| ! | TCTCTTTTGTAGATTTCATC+GGG | - | chr5.4:60103783-60103802 | MS.gene060250:CDS | 30.0% |
| !! | AAAGTTTAGTCGGTTTGTAT+TGG | + | chr5.4:60103053-60103072 | None:intergenic | 30.0% |
| !! | ACAGGTCATATGTTTTTGTA+TGG | - | chr5.4:60103885-60103904 | MS.gene060250:CDS | 30.0% |
| !! | ATCCCTTTACATGTTTTGTT+TGG | - | chr5.4:60103583-60103602 | MS.gene060250:intron | 30.0% |
| !!! | CCGTTTTTTGATATTGTCTA+TGG | + | chr5.4:60100544-60100563 | None:intergenic | 30.0% |
| !!! | TCCCTTTACATGTTTTGTTT+GGG | - | chr5.4:60103584-60103603 | MS.gene060250:intron | 30.0% |
| AAAAAAGTGATGTGTACACG+TGG | - | chr5.4:60101285-60101304 | MS.gene060250:intron | 35.0% | |
| AAACATATGACGTGCTTGAT+AGG | - | chr5.4:60102969-60102988 | MS.gene060250:intron | 35.0% | |
| AAATGGTATGGATCCAAGTA+AGG | - | chr5.4:60103557-60103576 | MS.gene060250:intron | 35.0% | |
| AAGATTCAAAGGAAAAGCTC+GGG | - | chr5.4:60103749-60103768 | MS.gene060250:CDS | 35.0% | |
| AAGGAAATACAGCCTAAAGA+AGG | + | chr5.4:60100416-60100435 | None:intergenic | 35.0% | |
| AATGGTATGGATCCAAGTAA+GGG | - | chr5.4:60103558-60103577 | MS.gene060250:intron | 35.0% | |
| ACACACATCAATATTCATGG+AGG | - | chr5.4:60103372-60103391 | MS.gene060250:intron | 35.0% | |
| ACCTAACGAATAAGTGTTAG+AGG | - | chr5.4:60103293-60103312 | MS.gene060250:intron | 35.0% | |
| AGATTTCATCGGGTTTAAGA+GGG | - | chr5.4:60103793-60103812 | MS.gene060250:CDS | 35.0% | |
| AGGAAATACAGCCTAAAGAA+GGG | + | chr5.4:60100415-60100434 | None:intergenic | 35.0% | |
| ATCATAAGTAACTCCCACAT+GGG | + | chr5.4:60101313-60101332 | None:intergenic | 35.0% | |
| ATGACAAAACCTCGATTGAT+GGG | + | chr5.4:60103912-60103931 | None:intergenic | 35.0% | |
| ATGACCAAAGATAATGAGCT+AGG | - | chr5.4:60100464-60100483 | MS.gene060250:CDS | 35.0% | |
| ATGGTGTAGTGGTTTATGTA+GGG | - | chr5.4:60103245-60103264 | MS.gene060250:intron | 35.0% | |
| ATGTGGGAGTTACTTATGAT+GGG | - | chr5.4:60101313-60101332 | MS.gene060250:intron | 35.0% | |
| ATTCAATATGTTTCCTCACC+TGG | + | chr5.4:60102465-60102484 | None:intergenic | 35.0% | |
| ATTGAGAGGAGTTGAGATAT+GGG | - | chr5.4:60103162-60103181 | MS.gene060250:intron | 35.0% | |
| CACACATCAATATTCATGGA+GGG | - | chr5.4:60103373-60103392 | MS.gene060250:intron | 35.0% | |
| CACTTTCTCTAATGTTATCC+GGG | + | chr5.4:60100303-60100322 | None:intergenic | 35.0% | |
| CAGAGTGAACAATTGATGAA+AGG | - | chr5.4:60103936-60103955 | MS.gene060250:CDS | 35.0% | |
| CCCCAAACAAAACATGTAAA+GGG | + | chr5.4:60103588-60103607 | None:intergenic | 35.0% | |
| CGATAATAGAAAACATGTGG+TGG | - | chr5.4:60104084-60104103 | MS.gene060250:CDS | 35.0% | |
| CTAAAAATGCAATGAAGGAG+TGG | - | chr5.4:60103476-60103495 | MS.gene060250:intron | 35.0% | |
| GAAAGGATTATCGAAGGAAA+TGG | - | chr5.4:60103953-60103972 | MS.gene060250:CDS | 35.0% | |
| GAAGATTCAAAGGAAAAGCT+CGG | - | chr5.4:60103748-60103767 | MS.gene060250:CDS | 35.0% | |
| GAGGTAGTTTATCACATGTT+GGG | + | chr5.4:60100264-60100283 | None:intergenic | 35.0% | |
| GCAAATATGACTTCCATTGA+AGG | - | chr5.4:60101859-60101878 | MS.gene060250:CDS | 35.0% | |
| GCAGTCAAAAAATTATGGTG+TGG | - | chr5.4:60100601-60100620 | MS.gene060250:intron | 35.0% | |
| GGAGTTGAAAAACTACTTTG+TGG | - | chr5.4:60103314-60103333 | MS.gene060250:intron | 35.0% | |
| GGCAATGTTAGTCAAACTTA+AGG | - | chr5.4:60101987-60102006 | MS.gene060250:CDS | 35.0% | |
| GTATGATATGCGTGTTAACA+TGG | - | chr5.4:60103414-60103433 | MS.gene060250:intron | 35.0% | |
| TAACAATAGGAGAAAGGGAT+TGG | - | chr5.4:60101672-60101691 | MS.gene060250:intron | 35.0% | |
| TAATAGAAAACATGTGGTGG+AGG | - | chr5.4:60104087-60104106 | MS.gene060250:CDS | 35.0% | |
| TACACTCGTCATAAAAATGG+TGG | - | chr5.4:60101443-60101462 | MS.gene060250:intron | 35.0% | |
| TAGATTTCATCGGGTTTAAG+AGG | - | chr5.4:60103792-60103811 | MS.gene060250:CDS | 35.0% | |
| TAGTGAATGATATGGTGTAG+TGG | - | chr5.4:60103234-60103253 | MS.gene060250:intron | 35.0% | |
| TATGGTGTAGTGGTTTATGT+AGG | - | chr5.4:60103244-60103263 | MS.gene060250:intron | 35.0% | |
| TCAAATACCTGAGGTATGTA+TGG | - | chr5.4:60101812-60101831 | MS.gene060250:intron | 35.0% | |
| TCCCCAAACAAAACATGTAA+AGG | + | chr5.4:60103589-60103608 | None:intergenic | 35.0% | |
| TCCTCTAACACTTATTCGTT+AGG | + | chr5.4:60103297-60103316 | None:intergenic | 35.0% | |
| TCGTTAGGTATTCCAATGTT+TGG | + | chr5.4:60103282-60103301 | None:intergenic | 35.0% | |
| TCTCTCTCATAAATGCATGT+GGG | - | chr5.4:60100967-60100986 | MS.gene060250:intron | 35.0% | |
| TGAAAAGATGCGTAGGATTA+TGG | - | chr5.4:60100343-60100362 | MS.gene060250:intron | 35.0% | |
| TGACTTTGATGAGGAGATAT+TGG | - | chr5.4:60103614-60103633 | MS.gene060250:CDS | 35.0% | |
| TGGCAAACAATCAAATGGTA+TGG | - | chr5.4:60103545-60103564 | MS.gene060250:intron | 35.0% | |
| TGGGTGAAAATCAAGGTTAT+GGG | - | chr5.4:60103700-60103719 | MS.gene060250:CDS | 35.0% | |
| TGGTGGGAAATGATGTTTAA+GGG | - | chr5.4:60103496-60103515 | MS.gene060250:intron | 35.0% | |
| TGTTGATATTGTCATTGGTG+AGG | - | chr5.4:60103850-60103869 | MS.gene060250:CDS | 35.0% | |
| TTATCACATGTTGGGTAATC+GGG | + | chr5.4:60100256-60100275 | None:intergenic | 35.0% | |
| TTCTCTCTCATAAATGCATG+TGG | - | chr5.4:60100966-60100985 | MS.gene060250:intron | 35.0% | |
| ! | GAAAACACACTCTGAAAGTT+TGG | - | chr5.4:60100513-60100532 | MS.gene060250:CDS | 35.0% |
| ! | GCATACGAAGTTTTCATTAG+AGG | - | chr5.4:60101335-60101354 | MS.gene060250:intron | 35.0% |
| ! | GTCTATCTCTTTTCCTTCAA+TGG | + | chr5.4:60101875-60101894 | None:intergenic | 35.0% |
| ! | GTGTTTGAAGTAAGATACAG+TGG | - | chr5.4:60102300-60102319 | MS.gene060250:intron | 35.0% |
| ! | TAGTTCTATCAGTACAAACG+TGG | - | chr5.4:60101113-60101132 | MS.gene060250:intron | 35.0% |
| ! | TCTATTTCTTGCACATTTCC+TGG | + | chr5.4:60100644-60100663 | None:intergenic | 35.0% |
| ! | TGGTATGTGTTGGTAAAGTT+TGG | + | chr5.4:60103033-60103052 | None:intergenic | 35.0% |
| !! | AAAGTGAAAAGGTGTCCTAA+GGG | - | chr5.4:60103982-60104001 | MS.gene060250:CDS | 35.0% |
| !! | AAGTTTTGATACCTTTCTCC+TGG | + | chr5.4:60100686-60100705 | None:intergenic | 35.0% |
| !! | GGGATTTATTGACTTTGATG+AGG | - | chr5.4:60103605-60103624 | MS.gene060250:intron | 35.0% |
| !!! | CCCTTTACATGTTTTGTTTG+GGG | - | chr5.4:60103585-60103604 | MS.gene060250:intron | 35.0% |
| AAAATGCAATGAAGGAGTGG+TGG | - | chr5.4:60103479-60103498 | MS.gene060250:intron | 40.0% | |
| AAATGCAATGAAGGAGTGGT+GGG | - | chr5.4:60103480-60103499 | MS.gene060250:intron | 40.0% | |
| AGTTCGCTCTAACAAAGGAA+AGG | - | chr5.4:60104014-60104033 | MS.gene060250:CDS | 40.0% | |
| ATGACGTGCTTGATAGGAAT+CGG | - | chr5.4:60102975-60102994 | MS.gene060250:intron | 40.0% | |
| ATGGTATGGATCCAAGTAAG+GGG | - | chr5.4:60103559-60103578 | MS.gene060250:intron | 40.0% | |
| ATGGTTTCAGCCATATCCAT+TGG | + | chr5.4:60102384-60102403 | None:intergenic | 40.0% | |
| ATTGAGGTCACAAATGTTGG+TGG | - | chr5.4:60100221-60100240 | MS.gene060250:CDS | 40.0% | |
| ATTGTAGGTTTGCACGATCT+AGG | + | chr5.4:60101584-60101603 | None:intergenic | 40.0% | |
| CATATCTCAACTCCTCTCAA+TGG | + | chr5.4:60103163-60103182 | None:intergenic | 40.0% | |
| CATCAATATTCATGGAGGGT+TGG | - | chr5.4:60103377-60103396 | MS.gene060250:intron | 40.0% | |
| CATCATAAGTAACTCCCACA+TGG | + | chr5.4:60101314-60101333 | None:intergenic | 40.0% | |
| CATGACAAAACCTCGATTGA+TGG | + | chr5.4:60103913-60103932 | None:intergenic | 40.0% | |
| CATGGTTCTCTTATGTAGTG+AGG | - | chr5.4:60103432-60103451 | MS.gene060250:intron | 40.0% | |
| CATGTGGGAGTTACTTATGA+TGG | - | chr5.4:60101312-60101331 | MS.gene060250:intron | 40.0% | |
| CATTGAGAGGAGTTGAGATA+TGG | - | chr5.4:60103161-60103180 | MS.gene060250:intron | 40.0% | |
| CATTGTTAAGGACATGTTGC+AGG | + | chr5.4:60102334-60102353 | None:intergenic | 40.0% | |
| CTATTTGCCACAATACAAGG+AGG | + | chr5.4:60102909-60102928 | None:intergenic | 40.0% | |
| CTCTTATGTAGTGAGGTTGT+GGG | - | chr5.4:60103439-60103458 | MS.gene060250:intron | 40.0% | |
| CTGATTGAGGTCACAAATGT+TGG | - | chr5.4:60100218-60100237 | MS.gene060250:CDS | 40.0% | |
| GAATCAGTTCGCTCTAACAA+AGG | - | chr5.4:60104009-60104028 | MS.gene060250:CDS | 40.0% | |
| GAATGGAGGTTTCCAAACAT+TGG | - | chr5.4:60103267-60103286 | MS.gene060250:intron | 40.0% | |
| GAGGTATGTATGGTCCATTA+AGG | - | chr5.4:60101822-60101841 | MS.gene060250:intron | 40.0% | |
| GATCGTCTTCTATCTGATTG+AGG | - | chr5.4:60100205-60100224 | MS.gene060250:CDS | 40.0% | |
| GCACTATTTGCCACAATACA+AGG | + | chr5.4:60102912-60102931 | None:intergenic | 40.0% | |
| GCGTAGGATTATGGACATAT+TGG | - | chr5.4:60100352-60100371 | MS.gene060250:intron | 40.0% | |
| GCTCTAACAAAGGAAAGGAA+GGG | - | chr5.4:60104019-60104038 | MS.gene060250:CDS | 40.0% | |
| GGACATATTGGAGAGTAGTT+TGG | - | chr5.4:60100364-60100383 | MS.gene060250:intron | 40.0% | |
| GGAGGTAGTTTATCACATGT+TGG | + | chr5.4:60100265-60100284 | None:intergenic | 40.0% | |
| GGCAAATAGTGCATTGTGAT+TGG | - | chr5.4:60102920-60102939 | MS.gene060250:intron | 40.0% | |
| GGTGGGAAATGATGTTTAAG+GGG | - | chr5.4:60103497-60103516 | MS.gene060250:intron | 40.0% | |
| GGTTCCTAGCTCATTATCTT+TGG | + | chr5.4:60100471-60100490 | None:intergenic | 40.0% | |
| GTAGGAACAAATGTGAATCC+AGG | - | chr5.4:60100623-60100642 | MS.gene060250:intron | 40.0% | |
| GTAGTGGTTTATGTAGGGAA+TGG | - | chr5.4:60103250-60103269 | MS.gene060250:intron | 40.0% | |
| GTGGGTGAAAATCAAGGTTA+TGG | - | chr5.4:60103699-60103718 | MS.gene060250:CDS | 40.0% | |
| TACAAAATTCCCCCGAAAGA+CGG | - | chr5.4:60101748-60101767 | MS.gene060250:intron | 40.0% | |
| TATCTTGCCATGTTCTTTCC+AGG | + | chr5.4:60101779-60101798 | None:intergenic | 40.0% | |
| TATTAATTGCAGTACGGCTG+TGG | - | chr5.4:60102716-60102735 | MS.gene060250:intron | 40.0% | |
| TCTCTTATGTAGTGAGGTTG+TGG | - | chr5.4:60103438-60103457 | MS.gene060250:intron | 40.0% | |
| TCTTATGTAGTGAGGTTGTG+GGG | - | chr5.4:60103440-60103459 | MS.gene060250:intron | 40.0% | |
| TGAGGAGATATTGGTGAGAA+AGG | - | chr5.4:60103623-60103642 | MS.gene060250:CDS | 40.0% | |
| TGCTACAAAGACCCTTCTTT+AGG | - | chr5.4:60100401-60100420 | MS.gene060250:intron | 40.0% | |
| TGTGGCTGAAAAATAGGAAG+TGG | + | chr5.4:60102886-60102905 | None:intergenic | 40.0% | |
| TGTTTAAGGGGATCAAACAC+TGG | - | chr5.4:60103509-60103528 | MS.gene060250:intron | 40.0% | |
| TTCTGAGTGGGTGAAAATCA+AGG | - | chr5.4:60103693-60103712 | MS.gene060250:CDS | 40.0% | |
| TTGGTGAGAAAGGTTTGATG+TGG | - | chr5.4:60103633-60103652 | MS.gene060250:CDS | 40.0% | |
| ! | AATGAGCTAGGAACCCTTTT+GGG | - | chr5.4:60100476-60100495 | MS.gene060250:CDS | 40.0% |
| ! | ACTGAAGTGCCACAAATAAG+TGG | - | chr5.4:60101146-60101165 | MS.gene060250:intron | 40.0% |
| ! | AGTGAATCTAAAGTGGTGGT+TGG | - | chr5.4:60103193-60103212 | MS.gene060250:intron | 40.0% |
| ! | AGTTGCGTTTAAGATTTGGG+TGG | - | chr5.4:60103723-60103742 | MS.gene060250:CDS | 40.0% |
| ! | CACTTTCTGAAAAGATGCGT+AGG | - | chr5.4:60100336-60100355 | MS.gene060250:intron | 40.0% |
| ! | CGGTTTGTATTGGTATGTGT+TGG | + | chr5.4:60103043-60103062 | None:intergenic | 40.0% |
| ! | GGGAGTTGCGTTTAAGATTT+GGG | - | chr5.4:60103720-60103739 | MS.gene060250:CDS | 40.0% |
| ! | GTGGTGGGAAATGATGTTTA+AGG | - | chr5.4:60103495-60103514 | MS.gene060250:intron | 40.0% |
| ! | TAATGAGCTAGGAACCCTTT+TGG | - | chr5.4:60100475-60100494 | MS.gene060250:CDS | 40.0% |
| ! | TAATGGACCATACATACCTC+AGG | + | chr5.4:60101822-60101841 | None:intergenic | 40.0% |
| ! | TGGGAGTTGCGTTTAAGATT+TGG | - | chr5.4:60103719-60103738 | MS.gene060250:CDS | 40.0% |
| !! | AAGTGAAAAGGTGTCCTAAG+GGG | - | chr5.4:60103983-60104002 | MS.gene060250:CDS | 40.0% |
| !! | ACTTTCTTCTTGGCTCTACA+AGG | + | chr5.4:60102255-60102274 | None:intergenic | 40.0% |
| !! | CATCAATCGAGGTTTTGTCA+TGG | - | chr5.4:60103911-60103930 | MS.gene060250:CDS | 40.0% |
| !! | GAAAGTGAAAAGGTGTCCTA+AGG | - | chr5.4:60103981-60104000 | MS.gene060250:CDS | 40.0% |
| !! | GGTTGAAGGCATCTTTGATA+AGG | - | chr5.4:60103826-60103845 | MS.gene060250:CDS | 40.0% |
| !!! | TGATACTTGTTTTGGCAGAG+AGG | - | chr5.4:60103126-60103145 | MS.gene060250:intron | 40.0% |
| AACAAAGGAAAGGAAGGGTG+TGG | - | chr5.4:60104024-60104043 | MS.gene060250:CDS | 45.0% | |
| AATTGCGCTCACTTCCCTTA+AGG | - | chr5.4:60101926-60101945 | MS.gene060250:CDS | 45.0% | |
| ACAAAATTCCCCCGAAAGAC+GGG | - | chr5.4:60101749-60101768 | MS.gene060250:intron | 45.0% | |
| ACATTGCCAGCTTCAAGGAA+TGG | + | chr5.4:60101975-60101994 | None:intergenic | 45.0% | |
| ACTTCAACCAGCACCAACTT+CGG | - | chr5.4:60102413-60102432 | MS.gene060250:intron | 45.0% | |
| ATGGCAAGATAGAGATGCCT+GGG | - | chr5.4:60101788-60101807 | MS.gene060250:intron | 45.0% | |
| ATTCAAAGGAAAAGCTCGGG+AGG | - | chr5.4:60103752-60103771 | MS.gene060250:CDS | 45.0% | |
| CAATAGGAGAAAGGGATTGG+AGG | - | chr5.4:60101675-60101694 | MS.gene060250:intron | 45.0% | |
| CGAGGGTAGTGAATCTAAAG+TGG | - | chr5.4:60103186-60103205 | MS.gene060250:intron | 45.0% | |
| CGCTCTAACAAAGGAAAGGA+AGG | - | chr5.4:60104018-60104037 | MS.gene060250:CDS | 45.0% | |
| GAACCAATCATCCCCCAAAA+GGG | + | chr5.4:60100492-60100511 | None:intergenic | 45.0% | |
| GAATAGAACGCACCATTGAG+AGG | - | chr5.4:60103148-60103167 | MS.gene060250:intron | 45.0% | |
| GACTAACATTGCCAGCTTCA+AGG | + | chr5.4:60101980-60101999 | None:intergenic | 45.0% | |
| GCTGGTGGCAAACAATCAAA+TGG | - | chr5.4:60103540-60103559 | MS.gene060250:intron | 45.0% | |
| GGATATGGCTGAAACCATCA+CGG | - | chr5.4:60102386-60102405 | MS.gene060250:intron | 45.0% | |
| GTAAAGGGATACCCCTTACT+TGG | + | chr5.4:60103573-60103592 | None:intergenic | 45.0% | |
| GTGGTTTATGTAGGGAATGG+AGG | - | chr5.4:60103253-60103272 | MS.gene060250:intron | 45.0% | |
| TACACTCCATTCCTTGAAGC+TGG | - | chr5.4:60101966-60101985 | MS.gene060250:CDS | 45.0% | |
| TACCTCAGGTATTTGAACCC+AGG | + | chr5.4:60101808-60101827 | None:intergenic | 45.0% | |
| TGACGTGCTTGATAGGAATC+GGG | - | chr5.4:60102976-60102995 | MS.gene060250:intron | 45.0% | |
| TTCCAGGAAAACCCGTCTTT+CGG | + | chr5.4:60101763-60101782 | None:intergenic | 45.0% | |
| TTGTATGGTCCCATCAATCG+AGG | - | chr5.4:60103900-60103919 | MS.gene060250:CDS | 45.0% | |
| ! | AGGAGGTGTGGCTGAAAAAT+AGG | + | chr5.4:60102892-60102911 | None:intergenic | 45.0% |
| ! | ATATCCATTGGTTGTCGTGC+CGG | + | chr5.4:60102372-60102391 | None:intergenic | 45.0% |
| ! | ATATTCATGGAGGGTTGGCA+AGG | - | chr5.4:60103382-60103401 | MS.gene060250:intron | 45.0% |
| ! | ATGAGCTAGGAACCCTTTTG+GGG | - | chr5.4:60100477-60100496 | MS.gene060250:CDS | 45.0% |
| ! | CGTGCCGGTACAAATAATGA+TGG | + | chr5.4:60102357-60102376 | None:intergenic | 45.0% |
| ! | GGGTAGTGAATCTAAAGTGG+TGG | - | chr5.4:60103189-60103208 | MS.gene060250:intron | 45.0% |
| ! | GGGTTTTCCTGGAAAGAACA+TGG | - | chr5.4:60101769-60101788 | MS.gene060250:intron | 45.0% |
| ! | GTGAGGAAGATGATAGTGAC+AGG | - | chr5.4:60103867-60103886 | MS.gene060250:CDS | 45.0% |
| ! | TGCGTTTAAGATTTGGGTGG+TGG | - | chr5.4:60103726-60103745 | MS.gene060250:CDS | 45.0% |
| !! | GTTTAAGAGGGTGTTGAAGG+TGG | - | chr5.4:60103805-60103824 | MS.gene060250:CDS | 45.0% |
| !! | TTGGGTGGTGGAAGATTCAA+AGG | - | chr5.4:60103738-60103757 | MS.gene060250:CDS | 45.0% |
| !!! | TATATTTTTTAAATTTTTGA+GGG | + | chr5.4:60102619-60102638 | None:intergenic | 5.0% |
| AGCCACACCTCCTTGTATTG+TGG | - | chr5.4:60102899-60102918 | MS.gene060250:intron | 50.0% | |
| AGCCACAGAGAATCCGAAGT+TGG | + | chr5.4:60102429-60102448 | None:intergenic | 50.0% | |
| AGGAGTTGAGATATGGGTCG+AGG | - | chr5.4:60103168-60103187 | MS.gene060250:intron | 50.0% | |
| ATCTATCCTGCGCAGCAGTT+TGG | - | chr5.4:60101718-60101737 | MS.gene060250:intron | 50.0% | |
| CACCAACTTCGGATTCTCTG+TGG | - | chr5.4:60102424-60102443 | MS.gene060250:intron | 50.0% | |
| CATGGCAAGATAGAGATGCC+TGG | - | chr5.4:60101787-60101806 | MS.gene060250:intron | 50.0% | |
| GGAACCAATCATCCCCCAAA+AGG | + | chr5.4:60100493-60100512 | None:intergenic | 50.0% | |
| GGAGTTGAGATATGGGTCGA+GGG | - | chr5.4:60103169-60103188 | MS.gene060250:intron | 50.0% | |
| GGCACGACAACCAATGGATA+TGG | - | chr5.4:60102371-60102390 | MS.gene060250:intron | 50.0% | |
| TATGTAGTGAGGTTGTGGGG+TGG | - | chr5.4:60103443-60103462 | MS.gene060250:intron | 50.0% | |
| TCCAGGAAAACCCGTCTTTC+GGG | + | chr5.4:60101762-60101781 | None:intergenic | 50.0% | |
| TCCGGGATCGACAAACTACA+CGG | + | chr5.4:60100286-60100305 | None:intergenic | 50.0% | |
| TCTATCCTGCGCAGCAGTTT+GGG | - | chr5.4:60101719-60101738 | MS.gene060250:intron | 50.0% | |
| TGATTGTTTGCCACCAGCTG+CGG | + | chr5.4:60103538-60103557 | None:intergenic | 50.0% | |
| TGCCACAATACAAGGAGGTG+TGG | + | chr5.4:60102904-60102923 | None:intergenic | 50.0% | |
| TGCCTGGGTTCAAATACCTG+AGG | - | chr5.4:60101803-60101822 | MS.gene060250:intron | 50.0% | |
| TGGTTGAAGTTCAGCCGTGA+TGG | + | chr5.4:60102403-60102422 | None:intergenic | 50.0% | |
| TGTACACGTGGAACCCATGT+GGG | - | chr5.4:60101297-60101316 | MS.gene060250:intron | 50.0% | |
| ! | CGAACTGATTCACACCCCTT+AGG | + | chr5.4:60104000-60104019 | None:intergenic | 50.0% |
| ! | GAGGTCACAAATGTTGGTGG+CGG | - | chr5.4:60100224-60100243 | MS.gene060250:CDS | 50.0% |
| ! | GGAGGGTTGGCAAGGAATTA+AGG | - | chr5.4:60103390-60103409 | MS.gene060250:intron | 50.0% |
| ! | TCCGTGTAGTTTGTCGATCC+CGG | - | chr5.4:60100282-60100301 | MS.gene060250:intron | 50.0% |
| ! | TGAGCTAGGAACCCTTTTGG+GGG | - | chr5.4:60100478-60100497 | MS.gene060250:CDS | 50.0% |
| !! | AGAGAATCCGAAGTTGGTGC+TGG | + | chr5.4:60102423-60102442 | None:intergenic | 50.0% |
| !! | AGGGTGTTGAAGGTGGTTGA+AGG | - | chr5.4:60103812-60103831 | MS.gene060250:CDS | 50.0% |
| !! | CGGGTTTAAGAGGGTGTTGA+AGG | - | chr5.4:60103802-60103821 | MS.gene060250:CDS | 50.0% |
| !! | GAACCCTTTTGGGGGATGAT+TGG | - | chr5.4:60100486-60100505 | MS.gene060250:CDS | 50.0% |
| AGTACGGCTGTGGTTTGAGC+CGG | - | chr5.4:60102726-60102745 | MS.gene060250:intron | 55.0% | |
| CACTCTCGCAACCAGGAGAA+AGG | - | chr5.4:60100672-60100691 | MS.gene060250:CDS | 55.0% | |
| CAGGAAAACCCGTCTTTCGG+GGG | + | chr5.4:60101760-60101779 | None:intergenic | 55.0% | |
| CCAGGAAAACCCGTCTTTCG+GGG | + | chr5.4:60101761-60101780 | None:intergenic | 55.0% | |
| GGGATCGACAAACTACACGG+AGG | + | chr5.4:60100283-60100302 | None:intergenic | 55.0% | |
| GTGTACACGTGGAACCCATG+TGG | - | chr5.4:60101296-60101315 | MS.gene060250:intron | 55.0% | |
| TGGCTTTCATCCAGCACACC+AGG | - | chr5.4:60102444-60102463 | MS.gene060250:intron | 55.0% | |
| TGTTTCCTCACCTGGTGTGC+TGG | + | chr5.4:60102457-60102476 | None:intergenic | 55.0% | |
| TTCATCCAGCACACCAGGTG+AGG | - | chr5.4:60102449-60102468 | MS.gene060250:intron | 55.0% | |
| ! | TGTACCGGCACGACAACCAA+TGG | - | chr5.4:60102365-60102384 | MS.gene060250:intron | 55.0% |
| GAAAAGCTCGGGAGGTGACG+AGG | - | chr5.4:60103760-60103779 | MS.gene060250:CDS | 60.0% | |
| GTGTTCCCAAACTGCTGCGC+AGG | + | chr5.4:60101727-60101746 | None:intergenic | 60.0% | |
| !! | CCCCGAAAGACGGGTTTTCC+TGG | - | chr5.4:60101758-60101777 | MS.gene060250:intron | 60.0% |
| CAAACACTGGTCGCCGCAGC+TGG | - | chr5.4:60103522-60103541 | MS.gene060250:intron | 65.0% | |
| GCGTCGTCACTCTCGCAACC+AGG | - | chr5.4:60100665-60100684 | MS.gene060250:intron | 65.0% | |
| ACACTGGTCGCCGCAGCTGG+TGG | - | chr5.4:60103525-60103544 | MS.gene060250:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 60100188 | 60104114 | 60100188 | ID=MS.gene060250 |
| chr5.4 | mRNA | 60100188 | 60104114 | 60100188 | ID=MS.gene060250.t1;Parent=MS.gene060250 |
| chr5.4 | exon | 60103609 | 60104114 | 60103609 | ID=MS.gene060250.t1.exon1;Parent=MS.gene060250.t1 |
| chr5.4 | CDS | 60103609 | 60104114 | 60103609 | ID=cds.MS.gene060250.t1;Parent=MS.gene060250.t1 |
| chr5.4 | exon | 60102478 | 60102621 | 60102478 | ID=MS.gene060250.t1.exon2;Parent=MS.gene060250.t1 |
| chr5.4 | CDS | 60102478 | 60102621 | 60102478 | ID=cds.MS.gene060250.t1;Parent=MS.gene060250.t1 |
| chr5.4 | exon | 60101837 | 60102093 | 60101837 | ID=MS.gene060250.t1.exon3;Parent=MS.gene060250.t1 |
| chr5.4 | CDS | 60101837 | 60102093 | 60101837 | ID=cds.MS.gene060250.t1;Parent=MS.gene060250.t1 |
| chr5.4 | exon | 60100997 | 60101036 | 60100997 | ID=MS.gene060250.t1.exon4;Parent=MS.gene060250.t1 |
| chr5.4 | CDS | 60100997 | 60101036 | 60100997 | ID=cds.MS.gene060250.t1;Parent=MS.gene060250.t1 |
| chr5.4 | exon | 60100667 | 60100852 | 60100667 | ID=MS.gene060250.t1.exon5;Parent=MS.gene060250.t1 |
| chr5.4 | CDS | 60100667 | 60100852 | 60100667 | ID=cds.MS.gene060250.t1;Parent=MS.gene060250.t1 |
| chr5.4 | exon | 60100414 | 60100587 | 60100414 | ID=MS.gene060250.t1.exon6;Parent=MS.gene060250.t1 |
| chr5.4 | CDS | 60100414 | 60100587 | 60100414 | ID=cds.MS.gene060250.t1;Parent=MS.gene060250.t1 |
| chr5.4 | exon | 60100188 | 60100299 | 60100188 | ID=MS.gene060250.t1.exon7;Parent=MS.gene060250.t1 |
| chr5.4 | CDS | 60100188 | 60100299 | 60100188 | ID=cds.MS.gene060250.t1;Parent=MS.gene060250.t1 |
| Gene Sequence |
| Protein sequence |
