Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67250.t1 | XP_003615896.2 | 68.1 | 476 | 135 | 7 | 1 | 465 | 307 | 776 | 7.30E-175 | 623.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67250.t1 | Q9FGH9 | 59.3 | 297 | 108 | 4 | 2 | 287 | 217 | 511 | 1.3e-90 | 335.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67250.t1 | G7JZS8 | 68.1 | 476 | 135 | 7 | 1 | 465 | 307 | 776 | 5.3e-175 | 623.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene67250.t1 | TF | WRKY |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene060250 | MS.gene67250 | 0.828271 | 9.86E-55 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67250.t1 | MTR_5g073620 | 68.067 | 476 | 135 | 7 | 1 | 465 | 307 | 776 | 0.0 | 645 |
MS.gene67250.t1 | MTR_5g073450 | 58.182 | 330 | 112 | 4 | 2 | 311 | 222 | 545 | 1.71e-118 | 361 |
MS.gene67250.t1 | MTR_3g031130 | 54.369 | 309 | 116 | 4 | 2 | 287 | 212 | 518 | 7.13e-97 | 305 |
MS.gene67250.t1 | MTR_5g073460 | 50.325 | 308 | 129 | 4 | 2 | 287 | 279 | 584 | 1.21e-90 | 290 |
MS.gene67250.t1 | MTR_5g073770 | 77.500 | 160 | 34 | 1 | 1 | 158 | 220 | 379 | 1.89e-81 | 257 |
MS.gene67250.t1 | MTR_5g073480 | 52.124 | 259 | 101 | 3 | 2 | 239 | 280 | 536 | 2.30e-77 | 253 |
MS.gene67250.t1 | MTR_5g074130 | 41.319 | 288 | 153 | 4 | 2 | 276 | 272 | 556 | 1.40e-60 | 211 |
MS.gene67250.t1 | MTR_5g073820 | 54.867 | 226 | 49 | 4 | 24 | 244 | 256 | 433 | 2.08e-59 | 202 |
MS.gene67250.t1 | MTR_6g033310 | 32.381 | 315 | 180 | 5 | 2 | 285 | 303 | 615 | 6.89e-48 | 176 |
MS.gene67250.t1 | MTR_1g090620 | 33.333 | 294 | 185 | 3 | 2 | 286 | 226 | 517 | 8.35e-48 | 174 |
MS.gene67250.t1 | MTR_1g057560 | 32.653 | 294 | 187 | 3 | 2 | 286 | 220 | 511 | 6.42e-46 | 169 |
MS.gene67250.t1 | MTR_8g021330 | 33.016 | 315 | 180 | 6 | 2 | 287 | 182 | 494 | 4.07e-45 | 166 |
MS.gene67250.t1 | MTR_4g103540 | 31.818 | 308 | 185 | 4 | 2 | 287 | 269 | 573 | 6.72e-45 | 167 |
MS.gene67250.t1 | MTR_7g013770 | 28.655 | 342 | 206 | 4 | 2 | 311 | 247 | 582 | 5.17e-44 | 164 |
MS.gene67250.t1 | MTR_5g093530 | 36.803 | 269 | 151 | 4 | 61 | 316 | 250 | 512 | 2.08e-42 | 158 |
MS.gene67250.t1 | MTR_7g026630 | 31.949 | 313 | 182 | 6 | 1 | 284 | 230 | 540 | 3.33e-42 | 159 |
MS.gene67250.t1 | MTR_5g073900 | 40.079 | 252 | 126 | 5 | 2 | 240 | 4 | 243 | 7.07e-42 | 152 |
MS.gene67250.t1 | MTR_5g073920 | 30.982 | 397 | 236 | 10 | 2 | 379 | 266 | 643 | 1.08e-41 | 158 |
MS.gene67250.t1 | MTR_3g464010 | 35.548 | 301 | 169 | 7 | 2 | 282 | 269 | 564 | 3.40e-41 | 156 |
MS.gene67250.t1 | MTR_4g062330 | 28.662 | 314 | 190 | 6 | 3 | 284 | 192 | 503 | 1.25e-35 | 140 |
MS.gene67250.t1 | MTR_3g025900 | 29.126 | 309 | 194 | 4 | 2 | 287 | 202 | 508 | 3.54e-35 | 138 |
MS.gene67250.t1 | MTR_2g096230 | 24.516 | 310 | 206 | 4 | 3 | 286 | 179 | 486 | 6.85e-33 | 132 |
MS.gene67250.t1 | MTR_5g073960 | 45.570 | 158 | 73 | 3 | 2 | 158 | 271 | 416 | 1.25e-29 | 120 |
MS.gene67250.t1 | MTR_1g067480 | 25.076 | 331 | 205 | 6 | 3 | 298 | 188 | 510 | 3.60e-28 | 118 |
MS.gene67250.t1 | MTR_1g117090 | 26.912 | 353 | 186 | 7 | 2 | 290 | 219 | 563 | 1.68e-27 | 116 |
MS.gene67250.t1 | MTR_1g067460 | 26.019 | 319 | 193 | 6 | 3 | 286 | 186 | 496 | 4.80e-27 | 114 |
MS.gene67250.t1 | MTR_5g073650 | 40.120 | 167 | 55 | 3 | 2 | 166 | 193 | 316 | 5.26e-23 | 99.8 |
MS.gene67250.t1 | MTR_5g067680 | 48.889 | 90 | 42 | 2 | 344 | 433 | 188 | 273 | 3.23e-22 | 98.2 |
MS.gene67250.t1 | MTR_5g073810 | 40.120 | 167 | 55 | 3 | 2 | 166 | 295 | 418 | 1.33e-21 | 97.4 |
MS.gene67250.t1 | MTR_1g009620 | 26.230 | 244 | 163 | 4 | 47 | 273 | 286 | 529 | 4.82e-15 | 78.2 |
MS.gene67250.t1 | MTR_1g017910 | 26.230 | 305 | 169 | 8 | 10 | 272 | 269 | 559 | 2.23e-14 | 75.9 |
MS.gene67250.t1 | MTR_5g074190 | 45.055 | 91 | 46 | 2 | 118 | 206 | 184 | 272 | 5.06e-11 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67250.t1 | AT5G58430 | 59.259 | 297 | 108 | 4 | 2 | 287 | 217 | 511 | 8.76e-104 | 322 |
MS.gene67250.t1 | AT1G07000 | 45.151 | 299 | 149 | 4 | 2 | 287 | 199 | 495 | 2.85e-82 | 266 |
MS.gene67250.t1 | AT5G50380 | 33.013 | 312 | 191 | 5 | 2 | 298 | 256 | 564 | 2.06e-52 | 187 |
MS.gene67250.t1 | AT5G03540 | 34.448 | 299 | 184 | 4 | 2 | 290 | 105 | 401 | 7.46e-51 | 181 |
MS.gene67250.t1 | AT5G03540 | 34.448 | 299 | 184 | 4 | 2 | 290 | 220 | 516 | 4.11e-50 | 181 |
MS.gene67250.t1 | AT5G03540 | 34.448 | 299 | 184 | 4 | 2 | 290 | 246 | 542 | 8.92e-50 | 180 |
MS.gene67250.t1 | AT5G13990 | 34.539 | 304 | 176 | 5 | 2 | 286 | 274 | 573 | 5.34e-46 | 170 |
MS.gene67250.t1 | AT5G52340 | 32.203 | 295 | 189 | 3 | 2 | 287 | 220 | 512 | 1.66e-44 | 165 |
MS.gene67250.t1 | AT1G72470 | 34.076 | 314 | 177 | 6 | 2 | 287 | 199 | 510 | 5.64e-44 | 164 |
MS.gene67250.t1 | AT3G14090 | 30.745 | 322 | 196 | 6 | 2 | 298 | 194 | 513 | 9.24e-42 | 157 |
MS.gene67250.t1 | AT1G54090 | 31.385 | 325 | 191 | 6 | 2 | 298 | 191 | 511 | 3.07e-40 | 153 |
MS.gene67250.t1 | AT5G13150 | 32.132 | 333 | 188 | 7 | 2 | 301 | 225 | 552 | 4.91e-40 | 153 |
MS.gene67250.t1 | AT3G29400 | 30.189 | 318 | 175 | 5 | 17 | 287 | 222 | 539 | 4.37e-35 | 139 |
MS.gene67250.t1 | AT5G59730 | 27.619 | 315 | 195 | 5 | 3 | 286 | 181 | 493 | 9.07e-35 | 137 |
MS.gene67250.t1 | AT5G59730 | 27.619 | 315 | 195 | 5 | 3 | 286 | 181 | 493 | 1.02e-34 | 137 |
MS.gene67250.t1 | AT5G52350 | 29.352 | 293 | 196 | 3 | 2 | 285 | 174 | 464 | 1.43e-33 | 134 |
MS.gene67250.t1 | AT1G07725 | 26.774 | 310 | 198 | 4 | 2 | 286 | 190 | 495 | 1.51e-33 | 134 |
MS.gene67250.t1 | AT2G39380 | 26.774 | 310 | 198 | 4 | 3 | 285 | 197 | 504 | 3.97e-31 | 127 |
MS.gene67250.t1 | AT3G55150 | 25.806 | 310 | 201 | 3 | 3 | 285 | 198 | 505 | 1.24e-29 | 122 |
MS.gene67250.t1 | AT5G61010 | 28.082 | 292 | 186 | 4 | 4 | 273 | 227 | 516 | 3.20e-29 | 121 |
MS.gene67250.t1 | AT5G61010 | 28.082 | 292 | 186 | 4 | 4 | 273 | 227 | 516 | 3.20e-29 | 121 |
MS.gene67250.t1 | AT2G28650 | 25.714 | 315 | 214 | 4 | 2 | 298 | 162 | 474 | 3.28e-28 | 118 |
MS.gene67250.t1 | AT2G28640 | 25.000 | 312 | 205 | 3 | 2 | 286 | 170 | 479 | 5.41e-28 | 117 |
MS.gene67250.t1 | AT3G09520 | 26.667 | 315 | 199 | 8 | 2 | 286 | 185 | 497 | 2.44e-25 | 109 |
MS.gene67250.t1 | AT3G09530 | 24.367 | 316 | 206 | 7 | 2 | 286 | 180 | 493 | 1.54e-22 | 101 |
MS.gene67250.t1 | AT2G40740 | 35.156 | 128 | 77 | 4 | 317 | 443 | 133 | 255 | 9.77e-17 | 80.9 |
MS.gene67250.t1 | AT2G40740 | 35.156 | 128 | 77 | 4 | 317 | 443 | 142 | 264 | 9.82e-17 | 81.3 |
MS.gene67250.t1 | AT4G31540 | 25.869 | 259 | 168 | 7 | 47 | 287 | 289 | 541 | 2.80e-16 | 82.0 |
MS.gene67250.t1 | AT1G51640 | 26.531 | 245 | 162 | 7 | 46 | 273 | 248 | 491 | 1.85e-12 | 70.1 |
MS.gene67250.t1 | AT5G22570 | 32.500 | 80 | 51 | 1 | 360 | 439 | 111 | 187 | 2.35e-11 | 65.1 |
Find 103 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATTATTATATTGAAGAAAT+TGG | 0.131951 | 5.1:+56874236 | MS.gene67250:CDS |
TGCCTAATGCATAGATTATT+TGG | 0.145335 | 5.1:+56873862 | MS.gene67250:CDS |
CCAGAATTTGAATCCTTATT+TGG | 0.162223 | 5.1:+56874186 | MS.gene67250:CDS |
TGAAAAGATGCGTAGGATTA+TGG | 0.226100 | 5.1:+56874437 | MS.gene67250:CDS |
CTTTGTGACCGCGTCTTCTT+TGG | 0.228205 | 5.1:+56874009 | MS.gene67250:CDS |
TCCAGGAAAACCCGTCTTTC+GGG | 0.242613 | 5.1:-56875850 | None:intergenic |
CCAAATAAGGATTCAAATTC+TGG | 0.242779 | 5.1:-56874186 | None:intergenic |
AAGTTGTTGTACTTTCTTCT+TGG | 0.253122 | 5.1:-56876415 | None:intergenic |
ATTATTATATTGAAGAAATT+GGG | 0.256143 | 5.1:+56874237 | MS.gene67250:CDS |
GAAAACACACTCTGAAAGTT+TGG | 0.271307 | 5.1:+56874607 | MS.gene67250:CDS |
TCTATTTCTTGCACATTTCC+TGG | 0.289570 | 5.1:-56874735 | None:intergenic |
TATCTTGCCATGTTCTTTCC+AGG | 0.290552 | 5.1:-56875867 | None:intergenic |
TTCCAGGAAAACCCGTCTTT+CGG | 0.295860 | 5.1:-56875851 | None:intergenic |
GGTTCCTAGCTCATTATCTT+TGG | 0.299296 | 5.1:-56874562 | None:intergenic |
AGACAAACTGTAACCAAATA+AGG | 0.310559 | 5.1:-56874199 | None:intergenic |
TTTATCACATGTTGGGTAAT+CGG | 0.316816 | 5.1:-56874348 | None:intergenic |
ATCTATCCTGCGCAGCAGTT+TGG | 0.338903 | 5.1:+56875809 | MS.gene67250:CDS |
GGACATATTGGAGAGTAGTT+TGG | 0.346666 | 5.1:+56874458 | MS.gene67250:CDS |
TTGGTTACAGTTTGTCTCTA+AGG | 0.347067 | 5.1:+56874205 | MS.gene67250:CDS |
TTTCCTTCATGGAGATTTGC+AGG | 0.348763 | 5.1:+56874052 | MS.gene67250:CDS |
TAATGAGCTAGGAACCCTTT+TGG | 0.352948 | 5.1:+56874569 | MS.gene67250:CDS |
TATCTTACTTCAAACACGTT+TGG | 0.358977 | 5.1:-56876447 | None:intergenic |
CATTGTTAAGCACATGTTGC+AGG | 0.369922 | 5.1:-56876484 | None:intergenic |
TCTATCCTGCGCAGCAGTTT+GGG | 0.373684 | 5.1:+56875810 | MS.gene67250:CDS |
ACACTTTCTCTAATGTTATC+CGG | 0.378588 | 5.1:-56874395 | None:intergenic |
TTCTAATCCATCTTTCAATC+TGG | 0.379729 | 5.1:-56873942 | None:intergenic |
TGCTACAAAGACCCTTCTTT+AGG | 0.390292 | 5.1:+56874495 | MS.gene67250:CDS |
GGCACGACAACCAATGGATA+TGG | 0.416229 | 5.1:+56876524 | MS.gene67250:CDS |
GCGTAGGATTATGGACATAT+TGG | 0.420319 | 5.1:+56874446 | MS.gene67250:CDS |
AAAACACACTCTGAAAGTTT+GGG | 0.422610 | 5.1:+56874608 | MS.gene67250:CDS |
ATCAATTAACAATAGGAGAA+AGG | 0.424085 | 5.1:+56875757 | MS.gene67250:intron |
TTATCACATGTTGGGTAATC+GGG | 0.424629 | 5.1:-56874347 | None:intergenic |
AAGATGGATTAGAACTTTCA+AGG | 0.440147 | 5.1:+56873951 | MS.gene67250:CDS |
TCACAAAGTCTTCGCTCGCC+AGG | 0.445872 | 5.1:-56873994 | None:intergenic |
CACTTTCTCTAATGTTATCC+GGG | 0.453501 | 5.1:-56874394 | None:intergenic |
ATTCAATATGTTTCCGCACC+TGG | 0.457571 | 5.1:-56876615 | None:intergenic |
GCAAAGGTAATGATAATGGC+TGG | 0.459176 | 5.1:+56873781 | None:intergenic |
TCAATTAACAATAGGAGAAA+GGG | 0.460658 | 5.1:+56875758 | MS.gene67250:intron |
TCCGTGTAGTTTGTCGATCC+CGG | 0.463303 | 5.1:+56874376 | MS.gene67250:CDS |
CCGATGTGTACAACAGTTGT+CGG | 0.465131 | 5.1:+56873821 | MS.gene67250:CDS |
AGCCAAATAATCTATGCATT+AGG | 0.466825 | 5.1:-56873864 | None:intergenic |
TAACAATAGGAGAAAGGGAT+TGG | 0.467666 | 5.1:+56875763 | MS.gene67250:intron |
AAGGAAATACAGCCTAAAGA+AGG | 0.477993 | 5.1:-56874507 | None:intergenic |
TGGCTTTCATCCAGCACACC+AGG | 0.483365 | 5.1:+56876597 | MS.gene67250:CDS |
GAGGTAGTTTATCACATGTT+GGG | 0.489990 | 5.1:-56874355 | None:intergenic |
TGTTTCCGCACCTGGTGTGC+TGG | 0.490580 | 5.1:-56876607 | None:intergenic |
ATACGTGTTGTTATTCATCA+AGG | 0.493917 | 5.1:-56874526 | None:intergenic |
TTGAAGACCAGATTGAAAGA+TGG | 0.497775 | 5.1:+56873935 | MS.gene67250:CDS |
ATATCCATTGGTTGTCGTGC+CGG | 0.498412 | 5.1:-56876522 | None:intergenic |
CACTCTCGCAACCAGGAGAA+AGG | 0.499437 | 5.1:+56874766 | MS.gene67250:CDS |
ATGGTTTCAGCCATATCCAT+TGG | 0.501633 | 5.1:-56876534 | None:intergenic |
TTATTATATTGAAGAAATTG+GGG | 0.507991 | 5.1:+56874238 | MS.gene67250:CDS |
GTGTTCCCAAACTGCTGCGC+AGG | 0.509319 | 5.1:-56875815 | None:intergenic |
AGGATTCAAATTCTGGAACT+AGG | 0.515763 | 5.1:-56874179 | None:intergenic |
CATGGCAAGATAGAGATGCC+TGG | 0.525543 | 5.1:+56875878 | MS.gene67250:CDS |
AATGCCATCATTATTTGTAC+CGG | 0.531553 | 5.1:+56876503 | MS.gene67250:CDS |
GGAGGTAGTTTATCACATGT+TGG | 0.534608 | 5.1:-56874356 | None:intergenic |
ATAATCTTGCATTTGAGTGA+AGG | 0.539806 | 5.1:-56874670 | None:intergenic |
CAATAGGAGAAAGGGATTGG+AGG | 0.540155 | 5.1:+56875766 | MS.gene67250:intron |
GTAGGAACAAATGTGAATCC+AGG | 0.547847 | 5.1:+56874717 | MS.gene67250:CDS |
CTTACAGAAGCTCAGCATTG+AGG | 0.550892 | 5.1:+56873885 | MS.gene67250:CDS |
GATAATGGCTGGGTTTGAGA+AGG | 0.554671 | 5.1:+56873792 | None:intergenic |
TTCCTTCATGGAGATTTGCA+GGG | 0.556828 | 5.1:+56874053 | MS.gene67250:CDS |
ATGACCAAAGATAATGAGCT+AGG | 0.557428 | 5.1:+56874558 | MS.gene67250:CDS |
GCGTCGTCACTCTCGCAACC+AGG | 0.559853 | 5.1:+56874759 | MS.gene67250:CDS |
CGTTCACAATATGTCATGGA+TGG | 0.560407 | 5.1:+56873909 | MS.gene67250:CDS |
TTCCCTGCAAATCTCCATGA+AGG | 0.562601 | 5.1:-56874055 | None:intergenic |
ATGGCAAGATAGAGATGCCT+GGG | 0.564861 | 5.1:+56875879 | MS.gene67250:CDS |
AGAGAATACGAAGTTGATGC+TGG | 0.569303 | 5.1:-56876573 | None:intergenic |
CCAGGAAAACCCGTCTTTCG+GGG | 0.571899 | 5.1:-56875849 | None:intergenic |
CGTGCCGGTACAAATAATGA+TGG | 0.572426 | 5.1:-56876507 | None:intergenic |
CAGGAAAACCCGTCTTTCGG+GGG | 0.576144 | 5.1:-56875848 | None:intergenic |
TTCATCCAGCACACCAGGTG+CGG | 0.576605 | 5.1:+56876602 | MS.gene67250:CDS |
TTTGTTGATTATGTGTCTAG+TGG | 0.582002 | 5.1:+56874099 | MS.gene67250:CDS |
TGTACCGGCACGACAACCAA+TGG | 0.583711 | 5.1:+56876518 | MS.gene67250:CDS |
CACAAAGTCTTCGCTCGCCA+GGG | 0.584462 | 5.1:-56873993 | None:intergenic |
AGGACGTTCACAATATGTCA+TGG | 0.591064 | 5.1:+56873905 | MS.gene67250:CDS |
AGGAAATACAGCCTAAAGAA+GGG | 0.592461 | 5.1:-56874506 | None:intergenic |
TTGATTATGTGTCTAGTGGA+AGG | 0.593326 | 5.1:+56874103 | MS.gene67250:CDS |
CTGACTGAGGTCACAAATGT+TGG | 0.593623 | 5.1:+56874312 | MS.gene67250:CDS |
AAAATTGAGAAGTTCAATCG+TGG | 0.595256 | 5.1:-56874079 | None:intergenic |
CAAAGGTAATGATAATGGCT+GGG | 0.596814 | 5.1:+56873782 | None:intergenic |
TGGTTGAAGTTCAGCCGTGA+TGG | 0.600848 | 5.1:-56876553 | None:intergenic |
CACTTTCTGAAAAGATGCGT+AGG | 0.609044 | 5.1:+56874430 | MS.gene67250:CDS |
TCCGGGATCGACAAACTACA+CGG | 0.614884 | 5.1:-56874377 | None:intergenic |
GAGGTCACAAATGTTGGTGG+CGG | 0.617645 | 5.1:+56874318 | MS.gene67250:CDS |
ACTGAGGTCACAAATGTTGG+TGG | 0.621748 | 5.1:+56874315 | MS.gene67250:CDS |
AAGAAGAAAGTACAACAACT+TGG | 0.631862 | 5.1:+56876417 | MS.gene67250:CDS |
CATCAACTTCGTATTCTCTG+TGG | 0.645104 | 5.1:+56876577 | MS.gene67250:CDS |
GATCGTCTTATATCTGACTG+AGG | 0.650878 | 5.1:+56874299 | MS.gene67250:CDS |
TGTGTACAACAGTTGTCGGA+GGG | 0.657606 | 5.1:+56873825 | MS.gene67250:CDS |
TACCTCAGGTATTTGAACCC+AGG | 0.658706 | 5.1:-56875896 | None:intergenic |
ATGTGTACAACAGTTGTCGG+AGG | 0.662472 | 5.1:+56873824 | MS.gene67250:CDS |
TTGTTTGTTTAAAATCCTCG+AGG | 0.665422 | 5.1:+56874137 | MS.gene67250:CDS |
GGATATGGCTGAAACCATCA+CGG | 0.672090 | 5.1:+56876539 | MS.gene67250:CDS |
AAATTGGGGAAAGCAATCAG+AGG | 0.682922 | 5.1:+56874252 | MS.gene67250:CDS |
CCGACAACTGTTGTACACAT+CGG | 0.683255 | 5.1:-56873821 | None:intergenic |
AGGGAAAAGTATCTTGAGAG+CGG | 0.684411 | 5.1:-56873974 | None:intergenic |
TGCCTGGGTTCAAATACCTG+AGG | 0.686633 | 5.1:+56875894 | MS.gene67250:CDS |
GTAATGTTTCAAACACCTCG+AGG | 0.699134 | 5.1:-56874152 | None:intergenic |
GTGTTTGAAGTAAGATACAG+TGG | 0.702689 | 5.1:+56876453 | MS.gene67250:CDS |
ATGAGAATCCAAAGAAGACG+CGG | 0.721400 | 5.1:-56874017 | None:intergenic |
GGGATCGACAAACTACACGG+AGG | 0.829211 | 5.1:-56874374 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTATTATATTGAAGAAAT+TGG | + | chr5.1:56874236-56874255 | MS.gene67250:CDS | 10.0% |
!! | ATATAAAAAATTACACATAA+AGG | - | chr5.1:56875184-56875203 | None:intergenic | 10.0% |
!! | ATTATTATATTGAAGAAATT+GGG | + | chr5.1:56874237-56874256 | MS.gene67250:CDS | 10.0% |
!! | TAACAAAATTAATTCCTTAA+TGG | - | chr5.1:56875930-56875949 | None:intergenic | 15.0% |
!! | TTATTATATTGAAGAAATTG+GGG | + | chr5.1:56874238-56874257 | MS.gene67250:CDS | 15.0% |
!! | TTGAAATGTATTAATGTAAA+AGG | + | chr5.1:56875276-56875295 | MS.gene67250:intron | 15.0% |
!!! | AAATCCATTTAGTAATTTTT+CGG | + | chr5.1:56875307-56875326 | MS.gene67250:intron | 15.0% |
!!! | AGTTCAAATAAGTTTTTTTT+AGG | + | chr5.1:56874814-56874833 | MS.gene67250:intron | 15.0% |
!!! | ATCTCACTTTTTTTTTTTTA+AGG | - | chr5.1:56874950-56874969 | None:intergenic | 15.0% |
!!! | ATTTGCTTTTTAATTAGTTT+TGG | + | chr5.1:56875648-56875667 | MS.gene67250:intron | 15.0% |
!!! | GTTCAAATAAGTTTTTTTTA+GGG | + | chr5.1:56874815-56874834 | MS.gene67250:intron | 15.0% |
!!! | TTTTTTATTTCTTGTTCAAT+CGG | - | chr5.1:56875005-56875024 | None:intergenic | 15.0% |
!! | AAAAATTCTCAACAAACTAA+TGG | + | chr5.1:56876280-56876299 | MS.gene67250:intron | 20.0% |
!! | AATTCCGAAAAATTACTAAA+TGG | - | chr5.1:56875314-56875333 | None:intergenic | 20.0% |
!! | AGATCATGATAATATATTGT+AGG | - | chr5.1:56875690-56875709 | None:intergenic | 20.0% |
!! | CAAATTGATTATTGTTGAAA+TGG | + | chr5.1:56875127-56875146 | MS.gene67250:intron | 20.0% |
!! | CAATCTCACAAATATAAAAA+TGG | + | chr5.1:56874912-56874931 | MS.gene67250:intron | 20.0% |
!! | TATTTGCAGTCAAAAAATTA+TGG | + | chr5.1:56874690-56874709 | MS.gene67250:CDS | 20.0% |
!! | TCTTCATATCAATTAACAAT+AGG | + | chr5.1:56875750-56875769 | MS.gene67250:intron | 20.0% |
!! | TTAAATCTAGTCAACATTTA+AGG | + | chr5.1:56875607-56875626 | MS.gene67250:intron | 20.0% |
!!! | AGATTGTTATTAAGATGTAA+AGG | + | chr5.1:56875024-56875043 | MS.gene67250:intron | 20.0% |
!!! | AGGATTTTAAACAAACAATT+TGG | - | chr5.1:56874135-56874154 | None:intergenic | 20.0% |
!!! | AGTAATTTTTCGGAATTATT+AGG | + | chr5.1:56875317-56875336 | MS.gene67250:intron | 20.0% |
!!! | ATAAAAGGTGTATTGTATTT+AGG | + | chr5.1:56875991-56876010 | MS.gene67250:intron | 20.0% |
!!! | CACTTTTTTTTTTTTAAGGA+AGG | - | chr5.1:56874946-56874965 | None:intergenic | 20.0% |
!!! | CATTTTTATATTTGTGAGAT+TGG | - | chr5.1:56874914-56874933 | None:intergenic | 20.0% |
!!! | TAAAAGGTGTATTGTATTTA+GGG | + | chr5.1:56875992-56876011 | MS.gene67250:intron | 20.0% |
! | ACAAATAAGTGGATACATAA+AGG | + | chr5.1:56875247-56875266 | MS.gene67250:intron | 25.0% |
! | AGAGATAGACGTATTATAAA+AGG | + | chr5.1:56875976-56875995 | MS.gene67250:intron | 25.0% |
! | ATCAATTAACAATAGGAGAA+AGG | + | chr5.1:56875757-56875776 | MS.gene67250:intron | 25.0% |
! | CATATTATTGAACTCTACAT+AGG | - | chr5.1:56875580-56875599 | None:intergenic | 25.0% |
! | CCATAGACAATATCAAAAAA+CGG | + | chr5.1:56874635-56874654 | MS.gene67250:CDS | 25.0% |
! | GATATTCAATGAAACCTTAA+GGG | - | chr5.1:56876034-56876053 | None:intergenic | 25.0% |
! | GATGTTCTAATAACATGTAT+AGG | + | chr5.1:56874967-56874986 | MS.gene67250:intron | 25.0% |
! | TCAATTAACAATAGGAGAAA+GGG | + | chr5.1:56875758-56875777 | MS.gene67250:intron | 25.0% |
! | TTCTATCAATCACAAAACTT+AGG | - | chr5.1:56876113-56876132 | None:intergenic | 25.0% |
! | TTTATGTATCCACTTATTTG+TGG | - | chr5.1:56875248-56875267 | None:intergenic | 25.0% |
!! | AAAAGGTGTATTGTATTTAG+GGG | + | chr5.1:56875993-56876012 | MS.gene67250:intron | 25.0% |
!! | AAGTTTCAAATTTTCGTGAT+AGG | - | chr5.1:56876329-56876348 | None:intergenic | 25.0% |
!!! | ATTTTTCGGAATTATTAGGT+TGG | + | chr5.1:56875321-56875340 | MS.gene67250:intron | 25.0% |
!!! | TTGAAACTTTTGTTTGTTTC+AGG | + | chr5.1:56876340-56876359 | MS.gene67250:intron | 25.0% |
AAAATTGAGAAGTTCAATCG+TGG | - | chr5.1:56874082-56874101 | None:intergenic | 30.0% | |
AACTACACTCGTCATAAAAA+TGG | + | chr5.1:56875531-56875550 | MS.gene67250:intron | 30.0% | |
AAGTTGTTGTACTTTCTTCT+TGG | - | chr5.1:56876418-56876437 | None:intergenic | 30.0% | |
AATGCCATCATTATTTGTAC+CGG | + | chr5.1:56876503-56876522 | MS.gene67250:CDS | 30.0% | |
ACACTTTCTCTAATGTTATC+CGG | - | chr5.1:56874398-56874417 | None:intergenic | 30.0% | |
AGACAAACTGTAACCAAATA+AGG | - | chr5.1:56874202-56874221 | None:intergenic | 30.0% | |
AGACAATATCAAAAAACGGA+GGG | + | chr5.1:56874639-56874658 | MS.gene67250:CDS | 30.0% | |
AGCCAAATAATCTATGCATT+AGG | - | chr5.1:56873867-56873886 | None:intergenic | 30.0% | |
ATAATCTTGCATTTGAGTGA+AGG | - | chr5.1:56874673-56874692 | None:intergenic | 30.0% | |
CAATATCACTGAAAAATGCA+CGG | - | chr5.1:56876143-56876162 | None:intergenic | 30.0% | |
CCAAATAAGGATTCAAATTC+TGG | - | chr5.1:56874189-56874208 | None:intergenic | 30.0% | |
CCAGAATTTGAATCCTTATT+TGG | + | chr5.1:56874186-56874205 | MS.gene67250:CDS | 30.0% | |
CGATATTCAATGAAACCTTA+AGG | - | chr5.1:56876035-56876054 | None:intergenic | 30.0% | |
GACAATGTTAGTCAAACTTA+AGG | + | chr5.1:56876078-56876097 | MS.gene67250:intron | 30.0% | |
GATATGAAGACACAATCATT+AGG | - | chr5.1:56875740-56875759 | None:intergenic | 30.0% | |
TAGACAATATCAAAAAACGG+AGG | + | chr5.1:56874638-56874657 | MS.gene67250:CDS | 30.0% | |
TATCTTACTTCAAACACGTT+TGG | - | chr5.1:56876450-56876469 | None:intergenic | 30.0% | |
TCAAAAAATTATGGTGTGGT+AGG | + | chr5.1:56874699-56874718 | MS.gene67250:CDS | 30.0% | |
TGCCTAATGCATAGATTATT+TGG | + | chr5.1:56873862-56873881 | MS.gene67250:CDS | 30.0% | |
TTCTAATCCATCTTTCAATC+TGG | - | chr5.1:56873945-56873964 | None:intergenic | 30.0% | |
TTTATCACATGTTGGGTAAT+CGG | - | chr5.1:56874351-56874370 | None:intergenic | 30.0% | |
! | AAAACACACTCTGAAAGTTT+GGG | + | chr5.1:56874608-56874627 | MS.gene67250:CDS | 30.0% |
! | AAACTTTCAGAGTGTGTTTT+CGG | - | chr5.1:56874608-56874627 | None:intergenic | 30.0% |
! | AAGAAGAAAGTACAACAACT+TGG | + | chr5.1:56876417-56876436 | MS.gene67250:CDS | 30.0% |
! | ATACGTGTTGTTATTCATCA+AGG | - | chr5.1:56874529-56874548 | None:intergenic | 30.0% |
! | TTGTTTGTTTAAAATCCTCG+AGG | + | chr5.1:56874137-56874156 | MS.gene67250:CDS | 30.0% |
! | TTTGTTGATTATGTGTCTAG+TGG | + | chr5.1:56874099-56874118 | MS.gene67250:CDS | 30.0% |
!! | AAGATGGATTAGAACTTTCA+AGG | + | chr5.1:56873951-56873970 | MS.gene67250:CDS | 30.0% |
!!! | CCGTTTTTTGATATTGTCTA+TGG | - | chr5.1:56874638-56874657 | None:intergenic | 30.0% |
AAAAAAGTGATGTGTACACG+TGG | + | chr5.1:56875375-56875394 | MS.gene67250:intron | 35.0% | |
AAGGAAATACAGCCTAAAGA+AGG | - | chr5.1:56874510-56874529 | None:intergenic | 35.0% | |
ACATTGTCAGCTTCAATGAA+TGG | - | chr5.1:56876066-56876085 | None:intergenic | 35.0% | |
AGGAAATACAGCCTAAAGAA+GGG | - | chr5.1:56874509-56874528 | None:intergenic | 35.0% | |
ATCATAAGTAACTCCCACAT+GGG | - | chr5.1:56875403-56875422 | None:intergenic | 35.0% | |
ATGACCAAAGATAATGAGCT+AGG | + | chr5.1:56874558-56874577 | MS.gene67250:CDS | 35.0% | |
ATGTGGGAGTTACTTATGAT+GGG | + | chr5.1:56875403-56875422 | MS.gene67250:intron | 35.0% | |
CACTTTCTCTAATGTTATCC+GGG | - | chr5.1:56874397-56874416 | None:intergenic | 35.0% | |
GAGGTAGTTTATCACATGTT+GGG | - | chr5.1:56874358-56874377 | None:intergenic | 35.0% | |
GCAAATATGACTTCCATTGA+AGG | + | chr5.1:56875950-56875969 | MS.gene67250:intron | 35.0% | |
GCAGTCAAAAAATTATGGTG+TGG | + | chr5.1:56874695-56874714 | MS.gene67250:CDS | 35.0% | |
TAACAATAGGAGAAAGGGAT+TGG | + | chr5.1:56875763-56875782 | MS.gene67250:intron | 35.0% | |
TACACTCGTCATAAAAATGG+TGG | + | chr5.1:56875534-56875553 | MS.gene67250:intron | 35.0% | |
TCAAATACCTGAGGTATGTA+TGG | + | chr5.1:56875903-56875922 | MS.gene67250:intron | 35.0% | |
TCTCTCTCATAAATGCATGT+GGG | + | chr5.1:56875059-56875078 | MS.gene67250:intron | 35.0% | |
TGAAAAGATGCGTAGGATTA+TGG | + | chr5.1:56874437-56874456 | MS.gene67250:CDS | 35.0% | |
TTATCACATGTTGGGTAATC+GGG | - | chr5.1:56874350-56874369 | None:intergenic | 35.0% | |
TTCTCTCTCATAAATGCATG+TGG | + | chr5.1:56875058-56875077 | MS.gene67250:intron | 35.0% | |
TTGAAGACCAGATTGAAAGA+TGG | + | chr5.1:56873935-56873954 | MS.gene67250:CDS | 35.0% | |
TTGATTATGTGTCTAGTGGA+AGG | + | chr5.1:56874103-56874122 | MS.gene67250:CDS | 35.0% | |
TTGGTTACAGTTTGTCTCTA+AGG | + | chr5.1:56874205-56874224 | MS.gene67250:CDS | 35.0% | |
! | GAAAACACACTCTGAAAGTT+TGG | + | chr5.1:56874607-56874626 | MS.gene67250:CDS | 35.0% |
! | GCATACGAAGTTTTCATTAG+AGG | + | chr5.1:56875425-56875444 | MS.gene67250:intron | 35.0% |
! | GTCTATCTCTTTTCCTTCAA+TGG | - | chr5.1:56875966-56875985 | None:intergenic | 35.0% |
! | GTGTTTGAAGTAAGATACAG+TGG | + | chr5.1:56876453-56876472 | MS.gene67250:CDS | 35.0% |
! | TAGTTCTATCAGTACAAACG+TGG | + | chr5.1:56875203-56875222 | MS.gene67250:intron | 35.0% |
! | TCTATTTCTTGCACATTTCC+TGG | - | chr5.1:56874738-56874757 | None:intergenic | 35.0% |
!! | AAGTTTTGATACCTTTCTCC+TGG | - | chr5.1:56874780-56874799 | None:intergenic | 35.0% |
!! | AGGATTCAAATTCTGGAACT+AGG | - | chr5.1:56874182-56874201 | None:intergenic | 35.0% |
AAATTGGGGAAAGCAATCAG+AGG | + | chr5.1:56874252-56874271 | MS.gene67250:CDS | 40.0% | |
AGGACGTTCACAATATGTCA+TGG | + | chr5.1:56873905-56873924 | MS.gene67250:CDS | 40.0% | |
ATGAGAATCCAAAGAAGACG+CGG | - | chr5.1:56874020-56874039 | None:intergenic | 40.0% | |
ATGGTTTCAGCCATATCCAT+TGG | - | chr5.1:56876537-56876556 | None:intergenic | 40.0% | |
ATTGTAGGTTTGCACGATCT+AGG | - | chr5.1:56875675-56875694 | None:intergenic | 40.0% | |
CATCAACTTCGTATTCTCTG+TGG | + | chr5.1:56876577-56876596 | MS.gene67250:CDS | 40.0% | |
CATCATAAGTAACTCCCACA+TGG | - | chr5.1:56875404-56875423 | None:intergenic | 40.0% | |
CATGAAGGAAAAATCAGCTG+CGG | - | chr5.1:56874043-56874062 | None:intergenic | 40.0% | |
CATGTGGGAGTTACTTATGA+TGG | + | chr5.1:56875402-56875421 | MS.gene67250:intron | 40.0% | |
CATTGTTAAGCACATGTTGC+AGG | - | chr5.1:56876487-56876506 | None:intergenic | 40.0% | |
CGTTCACAATATGTCATGGA+TGG | + | chr5.1:56873909-56873928 | MS.gene67250:CDS | 40.0% | |
GAGGTATGTATGGTCCATTA+AGG | + | chr5.1:56875913-56875932 | MS.gene67250:intron | 40.0% | |
GATCGTCTTATATCTGACTG+AGG | + | chr5.1:56874299-56874318 | MS.gene67250:CDS | 40.0% | |
GCGTAGGATTATGGACATAT+TGG | + | chr5.1:56874446-56874465 | MS.gene67250:CDS | 40.0% | |
GGACATATTGGAGAGTAGTT+TGG | + | chr5.1:56874458-56874477 | MS.gene67250:CDS | 40.0% | |
GGAGGTAGTTTATCACATGT+TGG | - | chr5.1:56874359-56874378 | None:intergenic | 40.0% | |
GGTTCCTAGCTCATTATCTT+TGG | - | chr5.1:56874565-56874584 | None:intergenic | 40.0% | |
GTAATGTTTCAAACACCTCG+AGG | - | chr5.1:56874155-56874174 | None:intergenic | 40.0% | |
GTAGGAACAAATGTGAATCC+AGG | + | chr5.1:56874717-56874736 | MS.gene67250:CDS | 40.0% | |
TACAAAATTCCCCCGAAAGA+CGG | + | chr5.1:56875839-56875858 | MS.gene67250:CDS | 40.0% | |
TATAGACACACACACACATG+TGG | + | chr5.1:56876229-56876248 | MS.gene67250:intron | 40.0% | |
TATCTTGCCATGTTCTTTCC+AGG | - | chr5.1:56875870-56875889 | None:intergenic | 40.0% | |
TGCTACAAAGACCCTTCTTT+AGG | + | chr5.1:56874495-56874514 | MS.gene67250:CDS | 40.0% | |
TTCCTTCATGGAGATTTGCA+GGG | + | chr5.1:56874053-56874072 | MS.gene67250:CDS | 40.0% | |
TTTCCTTCATGGAGATTTGC+AGG | + | chr5.1:56874052-56874071 | MS.gene67250:CDS | 40.0% | |
! | AATGAGCTAGGAACCCTTTT+GGG | + | chr5.1:56874570-56874589 | MS.gene67250:CDS | 40.0% |
! | ACGCATCTTTTCAGAAAGTG+AGG | - | chr5.1:56874430-56874449 | None:intergenic | 40.0% |
! | ACTGAAGTGCCACAAATAAG+TGG | + | chr5.1:56875236-56875255 | MS.gene67250:intron | 40.0% |
! | CACTTTCTGAAAAGATGCGT+AGG | + | chr5.1:56874430-56874449 | MS.gene67250:CDS | 40.0% |
! | TAATGAGCTAGGAACCCTTT+TGG | + | chr5.1:56874569-56874588 | MS.gene67250:CDS | 40.0% |
! | TAATGGACCATACATACCTC+AGG | - | chr5.1:56875913-56875932 | None:intergenic | 40.0% |
!! | AGAGAATACGAAGTTGATGC+TGG | - | chr5.1:56876576-56876595 | None:intergenic | 40.0% |
!! | AGGGAAAAGTATCTTGAGAG+CGG | - | chr5.1:56873977-56873996 | None:intergenic | 40.0% |
!!! | AGCAATCAGAGGCATTTTCA+TGG | + | chr5.1:56874263-56874282 | MS.gene67250:CDS | 40.0% |
AATTGCGCTCACTTCCCTTA+AGG | + | chr5.1:56876017-56876036 | MS.gene67250:intron | 45.0% | |
ACAAAATTCCCCCGAAAGAC+GGG | + | chr5.1:56875840-56875859 | MS.gene67250:CDS | 45.0% | |
ACTGAGGTCACAAATGTTGG+TGG | + | chr5.1:56874315-56874334 | MS.gene67250:CDS | 45.0% | |
ATGGCAAGATAGAGATGCCT+GGG | + | chr5.1:56875879-56875898 | MS.gene67250:CDS | 45.0% | |
ATGTGTACAACAGTTGTCGG+AGG | + | chr5.1:56873824-56873843 | MS.gene67250:CDS | 45.0% | |
CAATAGGAGAAAGGGATTGG+AGG | + | chr5.1:56875766-56875785 | MS.gene67250:intron | 45.0% | |
CCGACAACTGTTGTACACAT+CGG | - | chr5.1:56873824-56873843 | None:intergenic | 45.0% | |
CCGATGTGTACAACAGTTGT+CGG | + | chr5.1:56873821-56873840 | MS.gene67250:CDS | 45.0% | |
CTGACTGAGGTCACAAATGT+TGG | + | chr5.1:56874312-56874331 | MS.gene67250:CDS | 45.0% | |
CTTACAGAAGCTCAGCATTG+AGG | + | chr5.1:56873885-56873904 | MS.gene67250:CDS | 45.0% | |
GAACCAATCATCCCCCAAAA+GGG | - | chr5.1:56874586-56874605 | None:intergenic | 45.0% | |
GGATATGGCTGAAACCATCA+CGG | + | chr5.1:56876539-56876558 | MS.gene67250:CDS | 45.0% | |
TACCTCAGGTATTTGAACCC+AGG | - | chr5.1:56875899-56875918 | None:intergenic | 45.0% | |
TGTGTACAACAGTTGTCGGA+GGG | + | chr5.1:56873825-56873844 | MS.gene67250:CDS | 45.0% | |
TTCCAGGAAAACCCGTCTTT+CGG | - | chr5.1:56875854-56875873 | None:intergenic | 45.0% | |
TTCCCTGCAAATCTCCATGA+AGG | - | chr5.1:56874058-56874077 | None:intergenic | 45.0% | |
! | ATATCCATTGGTTGTCGTGC+CGG | - | chr5.1:56876525-56876544 | None:intergenic | 45.0% |
! | ATGAGCTAGGAACCCTTTTG+GGG | + | chr5.1:56874571-56874590 | MS.gene67250:CDS | 45.0% |
! | CGTGCCGGTACAAATAATGA+TGG | - | chr5.1:56876510-56876529 | None:intergenic | 45.0% |
! | GCTCTCAAGATACTTTTCCC+TGG | + | chr5.1:56873976-56873995 | MS.gene67250:CDS | 45.0% |
! | GGGTTTTCCTGGAAAGAACA+TGG | + | chr5.1:56875860-56875879 | MS.gene67250:CDS | 45.0% |
!! | CGCAGCTGATTTTTCCTTCA+TGG | + | chr5.1:56874041-56874060 | MS.gene67250:CDS | 45.0% |
!!! | CAGAGGCATTTTCATGGAGT+TGG | + | chr5.1:56874269-56874288 | MS.gene67250:CDS | 45.0% |
ATCTATCCTGCGCAGCAGTT+TGG | + | chr5.1:56875809-56875828 | MS.gene67250:CDS | 50.0% | |
CATGGCAAGATAGAGATGCC+TGG | + | chr5.1:56875878-56875897 | MS.gene67250:CDS | 50.0% | |
CTTTGTGACCGCGTCTTCTT+TGG | + | chr5.1:56874009-56874028 | MS.gene67250:CDS | 50.0% | |
GGAACCAATCATCCCCCAAA+AGG | - | chr5.1:56874587-56874606 | None:intergenic | 50.0% | |
GGCACGACAACCAATGGATA+TGG | + | chr5.1:56876524-56876543 | MS.gene67250:CDS | 50.0% | |
TCCAGGAAAACCCGTCTTTC+GGG | - | chr5.1:56875853-56875872 | None:intergenic | 50.0% | |
TCCGGGATCGACAAACTACA+CGG | - | chr5.1:56874380-56874399 | None:intergenic | 50.0% | |
TCTATCCTGCGCAGCAGTTT+GGG | + | chr5.1:56875810-56875829 | MS.gene67250:CDS | 50.0% | |
TGCCTGGGTTCAAATACCTG+AGG | + | chr5.1:56875894-56875913 | MS.gene67250:CDS | 50.0% | |
TGGTTGAAGTTCAGCCGTGA+TGG | - | chr5.1:56876556-56876575 | None:intergenic | 50.0% | |
TGTACACGTGGAACCCATGT+GGG | + | chr5.1:56875387-56875406 | MS.gene67250:intron | 50.0% | |
! | GAGGTCACAAATGTTGGTGG+CGG | + | chr5.1:56874318-56874337 | MS.gene67250:CDS | 50.0% |
! | TCCGTGTAGTTTGTCGATCC+CGG | + | chr5.1:56874376-56874395 | MS.gene67250:CDS | 50.0% |
! | TGAGCTAGGAACCCTTTTGG+GGG | + | chr5.1:56874572-56874591 | MS.gene67250:CDS | 50.0% |
!! | GAACCCTTTTGGGGGATGAT+TGG | + | chr5.1:56874580-56874599 | MS.gene67250:CDS | 50.0% |
CACAAAGTCTTCGCTCGCCA+GGG | - | chr5.1:56873996-56874015 | None:intergenic | 55.0% | |
CACTCTCGCAACCAGGAGAA+AGG | + | chr5.1:56874766-56874785 | MS.gene67250:CDS | 55.0% | |
CAGGAAAACCCGTCTTTCGG+GGG | - | chr5.1:56875851-56875870 | None:intergenic | 55.0% | |
CCAGGAAAACCCGTCTTTCG+GGG | - | chr5.1:56875852-56875871 | None:intergenic | 55.0% | |
GGGATCGACAAACTACACGG+AGG | - | chr5.1:56874377-56874396 | None:intergenic | 55.0% | |
GTGTACACGTGGAACCCATG+TGG | + | chr5.1:56875386-56875405 | MS.gene67250:intron | 55.0% | |
TCACAAAGTCTTCGCTCGCC+AGG | - | chr5.1:56873997-56874016 | None:intergenic | 55.0% | |
TGGCTTTCATCCAGCACACC+AGG | + | chr5.1:56876597-56876616 | MS.gene67250:CDS | 55.0% | |
TTCATCCAGCACACCAGGTG+CGG | + | chr5.1:56876602-56876621 | MS.gene67250:CDS | 55.0% | |
! | TGTACCGGCACGACAACCAA+TGG | + | chr5.1:56876518-56876537 | MS.gene67250:CDS | 55.0% |
GTGTTCCCAAACTGCTGCGC+AGG | - | chr5.1:56875818-56875837 | None:intergenic | 60.0% | |
TGTTTCCGCACCTGGTGTGC+TGG | - | chr5.1:56876610-56876629 | None:intergenic | 60.0% | |
!! | CCCCGAAAGACGGGTTTTCC+TGG | + | chr5.1:56875849-56875868 | MS.gene67250:CDS | 60.0% |
GCGTCGTCACTCTCGCAACC+AGG | + | chr5.1:56874759-56874778 | MS.gene67250:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 56873796 | 56876635 | 56873796 | ID=MS.gene67250 |
chr5.1 | mRNA | 56873796 | 56876635 | 56873796 | ID=MS.gene67250.t1;Parent=MS.gene67250 |
chr5.1 | exon | 56873796 | 56874787 | 56873796 | ID=MS.gene67250.t1.exon1;Parent=MS.gene67250.t1 |
chr5.1 | CDS | 56873796 | 56874787 | 56873796 | ID=cds.MS.gene67250.t1;Parent=MS.gene67250.t1 |
chr5.1 | exon | 56875772 | 56875915 | 56875772 | ID=MS.gene67250.t1.exon2;Parent=MS.gene67250.t1 |
chr5.1 | CDS | 56875772 | 56875915 | 56875772 | ID=cds.MS.gene67250.t1;Parent=MS.gene67250.t1 |
chr5.1 | exon | 56876362 | 56876635 | 56876362 | ID=MS.gene67250.t1.exon3;Parent=MS.gene67250.t1 |
chr5.1 | CDS | 56876362 | 56876635 | 56876362 | ID=cds.MS.gene67250.t1;Parent=MS.gene67250.t1 |
Gene Sequence |
Protein sequence |