Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060562.t1 | XP_003609196.1 | 99 | 510 | 5 | 0 | 1 | 510 | 1 | 510 | 4.70E-284 | 986.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060562.t1 | Q93YV6 | 62.5 | 506 | 184 | 3 | 1 | 506 | 1 | 500 | 4.0e-183 | 642.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060562.t1 | G7JU51 | 99.0 | 510 | 5 | 0 | 1 | 510 | 1 | 510 | 3.4e-284 | 986.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060562 | MS.gene55875 | 0.816712 | 4.80E-52 | -1.69E-46 |
| MS.gene060562 | MS.gene92988 | 0.800952 | 1.13E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060562.t1 | MTR_4g113020 | 99.020 | 510 | 5 | 0 | 1 | 510 | 1 | 510 | 0.0 | 1044 |
| MS.gene060562.t1 | MTR_4g113020 | 99.485 | 388 | 2 | 0 | 1 | 388 | 1 | 388 | 0.0 | 799 |
| MS.gene060562.t1 | MTR_1g011460 | 59.880 | 501 | 185 | 6 | 1 | 497 | 1 | 489 | 0.0 | 639 |
| MS.gene060562.t1 | MTR_3g107980 | 59.237 | 498 | 189 | 6 | 1 | 491 | 1 | 491 | 0.0 | 624 |
| MS.gene060562.t1 | MTR_6g022720 | 52.590 | 502 | 210 | 5 | 1 | 483 | 1 | 493 | 0.0 | 532 |
| MS.gene060562.t1 | MTR_3g080070 | 50.838 | 537 | 232 | 4 | 1 | 508 | 1 | 534 | 0.0 | 531 |
| MS.gene060562.t1 | MTR_3g086010 | 51.200 | 500 | 228 | 4 | 1 | 484 | 1 | 500 | 0.0 | 524 |
| MS.gene060562.t1 | MTR_1g062950 | 53.165 | 474 | 206 | 7 | 15 | 484 | 15 | 476 | 4.48e-175 | 502 |
| MS.gene060562.t1 | MTR_1g111570 | 48.770 | 488 | 230 | 5 | 5 | 484 | 1 | 476 | 7.03e-170 | 489 |
| MS.gene060562.t1 | MTR_6g022720 | 53.623 | 414 | 164 | 5 | 1 | 395 | 1 | 405 | 3.96e-151 | 438 |
| MS.gene060562.t1 | MTR_7g102900 | 51.562 | 384 | 163 | 6 | 11 | 391 | 3 | 366 | 6.77e-138 | 403 |
| MS.gene060562.t1 | MTR_1g112940 | 39.379 | 419 | 249 | 2 | 82 | 497 | 31 | 447 | 2.50e-110 | 335 |
| MS.gene060562.t1 | MTR_7g102920 | 53.774 | 106 | 43 | 1 | 384 | 483 | 13 | 118 | 9.13e-31 | 116 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060562.t1 | AT5G25510 | 62.253 | 506 | 185 | 3 | 1 | 506 | 1 | 500 | 0.0 | 671 |
| MS.gene060562.t1 | AT4G15415 | 54.747 | 495 | 214 | 4 | 1 | 485 | 1 | 495 | 0.0 | 552 |
| MS.gene060562.t1 | AT4G15415 | 54.747 | 495 | 214 | 4 | 1 | 485 | 1 | 495 | 0.0 | 552 |
| MS.gene060562.t1 | AT4G15415 | 54.747 | 495 | 214 | 4 | 1 | 485 | 1 | 495 | 0.0 | 552 |
| MS.gene060562.t1 | AT4G15415 | 54.747 | 495 | 214 | 4 | 1 | 485 | 1 | 495 | 0.0 | 552 |
| MS.gene060562.t1 | AT3G26020 | 54.297 | 512 | 194 | 5 | 1 | 481 | 1 | 503 | 0.0 | 544 |
| MS.gene060562.t1 | AT3G26020 | 54.297 | 512 | 194 | 5 | 1 | 481 | 1 | 503 | 0.0 | 544 |
| MS.gene060562.t1 | AT3G26020 | 54.297 | 512 | 194 | 5 | 1 | 481 | 1 | 503 | 0.0 | 544 |
| MS.gene060562.t1 | AT3G26020 | 54.297 | 512 | 194 | 5 | 1 | 481 | 1 | 503 | 0.0 | 544 |
| MS.gene060562.t1 | AT1G13460 | 60.870 | 414 | 159 | 1 | 77 | 487 | 75 | 488 | 0.0 | 543 |
| MS.gene060562.t1 | AT1G13460 | 60.870 | 414 | 159 | 1 | 77 | 487 | 75 | 488 | 0.0 | 543 |
| MS.gene060562.t1 | AT3G21650 | 53.269 | 520 | 204 | 5 | 1 | 485 | 1 | 516 | 0.0 | 542 |
| MS.gene060562.t1 | AT3G21650 | 53.269 | 520 | 204 | 5 | 1 | 485 | 1 | 516 | 0.0 | 542 |
| MS.gene060562.t1 | AT3G09880 | 52.716 | 497 | 227 | 3 | 1 | 494 | 1 | 492 | 0.0 | 525 |
| MS.gene060562.t1 | AT5G03470 | 51.434 | 488 | 225 | 4 | 1 | 482 | 1 | 482 | 0.0 | 521 |
| MS.gene060562.t1 | AT3G26030 | 50.710 | 493 | 218 | 9 | 1 | 486 | 1 | 475 | 7.06e-169 | 486 |
| MS.gene060562.t1 | AT3G26020 | 46.250 | 560 | 184 | 7 | 1 | 481 | 1 | 522 | 5.89e-159 | 462 |
| MS.gene060562.t1 | AT3G54930 | 51.699 | 412 | 194 | 1 | 78 | 484 | 82 | 493 | 1.88e-156 | 455 |
| MS.gene060562.t1 | AT3G54930 | 51.699 | 412 | 194 | 1 | 78 | 484 | 82 | 493 | 1.88e-156 | 455 |
| MS.gene060562.t1 | AT4G15415 | 56.030 | 398 | 165 | 4 | 1 | 388 | 1 | 398 | 2.66e-154 | 447 |
| MS.gene060562.t1 | AT3G26020 | 46.409 | 543 | 191 | 9 | 1 | 481 | 1 | 505 | 6.45e-152 | 444 |
| MS.gene060562.t1 | AT3G26020 | 46.409 | 543 | 191 | 9 | 1 | 481 | 1 | 505 | 6.45e-152 | 444 |
| MS.gene060562.t1 | AT3G26020 | 46.409 | 543 | 191 | 9 | 1 | 481 | 1 | 505 | 6.45e-152 | 444 |
| MS.gene060562.t1 | AT3G54930 | 52.063 | 315 | 146 | 1 | 79 | 388 | 83 | 397 | 1.36e-114 | 344 |
Find 96 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAACAGATTTCCTTATAAA+AGG | 0.202511 | 8.4:+15801050 | None:intergenic |
| GAATCTGATGAGTCGGATTT+TGG | 0.207638 | 8.4:+15801740 | None:intergenic |
| ACAGTTCTGCATAGAATCTA+TGG | 0.252421 | 8.4:-15801092 | MS.gene060562:CDS |
| GGCAATAGTACTACTAGTTT+TGG | 0.252801 | 8.4:-15801701 | MS.gene060562:CDS |
| TAATGGAATTGCTGAGCTTT+TGG | 0.252902 | 8.4:-15800988 | MS.gene060562:CDS |
| ATGATAAATACCAATAGATT+TGG | 0.253333 | 8.4:+15800872 | None:intergenic |
| GGTTCAACTTACTGATAAAA+AGG | 0.257384 | 8.4:+15801516 | None:intergenic |
| GAGTGAGTTGGAAGAGGTTT+TGG | 0.272535 | 8.4:-15800727 | MS.gene060562:CDS |
| GTGTGCAACCAATTTGTTTA+GGG | 0.286986 | 8.4:-15801345 | MS.gene060562:CDS |
| TGTTCTGTACAGTTCTTATC+AGG | 0.296622 | 8.4:+15801464 | None:intergenic |
| AACATTTAATTTGCTTGAAA+TGG | 0.301664 | 8.4:+15801646 | None:intergenic |
| TCATGAACATTAGCTCCTTT+TGG | 0.304127 | 8.4:+15800748 | None:intergenic |
| TTATGTTCTGAGTCAGGTTC+AGG | 0.305779 | 8.4:+15799872 | None:intergenic |
| ATTGGTTAGCTCAGTGATAA+AGG | 0.320886 | 8.4:-15800802 | MS.gene060562:CDS |
| TGTGTGCAACCAATTTGTTT+AGG | 0.324252 | 8.4:-15801346 | MS.gene060562:CDS |
| CGCTGGTGGCGGCTTCTTCA+AGG | 0.337496 | 8.4:+15799734 | None:intergenic |
| GATTCTGCAAAGAGTGATTC+TGG | 0.347501 | 8.4:-15801722 | MS.gene060562:CDS |
| ACACCAGCATTCATGCTTGC+AGG | 0.350797 | 8.4:+15801596 | None:intergenic |
| CGGAACGAGCTCATTTGTTA+TGG | 0.366378 | 8.4:-15800002 | MS.gene060562:CDS |
| TTGCACAAACCCAAATCTAT+TGG | 0.370970 | 8.4:-15800882 | MS.gene060562:CDS |
| TCTTTCTTATGTTCTGAGTC+AGG | 0.372770 | 8.4:+15799866 | None:intergenic |
| GCAAATTAAATGTTGTGAAA+AGG | 0.378108 | 8.4:-15801637 | MS.gene060562:CDS |
| ACAAAGGCACCATAACCTTC+TGG | 0.379726 | 8.4:+15800682 | None:intergenic |
| TGGGAAAACCCTAAACAAAT+TGG | 0.379876 | 8.4:+15801337 | None:intergenic |
| TGATAAATACCAATAGATTT+GGG | 0.382190 | 8.4:+15800873 | None:intergenic |
| CCATGTTATTCTTCGCCTCT+CGG | 0.386938 | 8.4:+15799762 | None:intergenic |
| ATGGGAAATTCATGGTTCAT+AGG | 0.411237 | 8.4:-15801073 | MS.gene060562:CDS |
| GTAGATCATAAACAACTTGC+AGG | 0.412759 | 8.4:+15801243 | None:intergenic |
| CAAATTAAATGTTGTGAAAA+GGG | 0.416656 | 8.4:-15801636 | MS.gene060562:CDS |
| GGTGCCTTTGTTTCGACGGT+TGG | 0.420407 | 8.4:-15800670 | MS.gene060562:CDS |
| CATAGATAAGGATCAAAGAT+TGG | 0.423129 | 8.4:-15800820 | MS.gene060562:CDS |
| TTTGAAACCGAGCGGCATAA+TGG | 0.423693 | 8.4:-15801005 | MS.gene060562:CDS |
| TTCAAACAATCTCTTTCTCT+AGG | 0.433235 | 8.4:+15801116 | None:intergenic |
| TAGGGTCTTCAGAATCAAAA+AGG | 0.434877 | 8.4:+15801135 | None:intergenic |
| AAGAAAGATGCTATCTCAAA+TGG | 0.436356 | 8.4:-15799851 | MS.gene060562:CDS |
| CCTGGTAATGCGAGCTGGTA+AGG | 0.440760 | 8.4:+15800640 | None:intergenic |
| CATTGTACAGTTCATAGATA+AGG | 0.447391 | 8.4:-15800832 | MS.gene060562:CDS |
| TTACACAACGCAGCGATTGC+TGG | 0.448320 | 8.4:+15801371 | None:intergenic |
| CCTTACCAGCTCGCATTACC+AGG | 0.449673 | 8.4:-15800640 | MS.gene060562:intron |
| CAACAAGGTCTAACAACGTT+TGG | 0.456235 | 8.4:+15801429 | None:intergenic |
| AGCCTGTGTTTGATCCTGCT+TGG | 0.461055 | 8.4:-15801271 | MS.gene060562:CDS |
| TATCATAAACTTTGCAGCAA+AGG | 0.472991 | 8.4:+15801495 | None:intergenic |
| GGCTGAATTCCAGAAGGTTA+TGG | 0.473285 | 8.4:-15800691 | MS.gene060562:CDS |
| TAAAGGGACTATTGAAGTAT+TGG | 0.483354 | 8.4:-15800785 | MS.gene060562:CDS |
| CCACTACTCGAACGAAACTT+AGG | 0.485337 | 8.4:+15801314 | None:intergenic |
| TTGGTTAGCTCAGTGATAAA+GGG | 0.485661 | 8.4:-15800801 | MS.gene060562:CDS |
| GTGCTCTTCTTTCAATGGCA+AGG | 0.488424 | 8.4:+15800935 | None:intergenic |
| CTTCCTCTTCGATCTTGCGT+TGG | 0.492096 | 8.4:+15799806 | None:intergenic |
| TAGCAGTAGCTGGTTTCACT+TGG | 0.494863 | 8.4:+15799677 | None:intergenic |
| ACCGAGCATGTAGCAGTAGC+TGG | 0.494955 | 8.4:+15799667 | None:intergenic |
| TAGAATCTATGGGAAATTCA+TGG | 0.495390 | 8.4:-15801081 | MS.gene060562:CDS |
| CACCGCCACCACCTACGGAT+TGG | 0.496966 | 8.4:+15799710 | None:intergenic |
| TACATAACTCACAGAATCAC+TGG | 0.498799 | 8.4:-15799906 | MS.gene060562:CDS |
| GTCCAATCCGTAGGTGGTGG+CGG | 0.500852 | 8.4:-15799712 | MS.gene060562:CDS |
| CGAGAGGCAGAATCACTTGT+CGG | 0.511926 | 8.4:+15799944 | None:intergenic |
| CCTAAGTTTCGTTCGAGTAG+TGG | 0.514270 | 8.4:-15801314 | MS.gene060562:CDS |
| GTATTTCAGTGTACAAATGT+TGG | 0.518089 | 8.4:-15801674 | MS.gene060562:CDS |
| AATATCACCGCCACCACCTA+CGG | 0.521434 | 8.4:+15799705 | None:intergenic |
| GTTCATGAGTGAGTTGGAAG+AGG | 0.521832 | 8.4:-15800733 | MS.gene060562:CDS |
| ATAGATTTGGGTTTGTGCAA+AGG | 0.523747 | 8.4:+15800885 | None:intergenic |
| TCAAACAATCTCTTTCTCTA+GGG | 0.524186 | 8.4:+15801117 | None:intergenic |
| TTATGGTGCCTTTGTTTCGA+CGG | 0.533773 | 8.4:-15800674 | MS.gene060562:CDS |
| CTGTTAGCAATATCATCTAC+CGG | 0.536734 | 8.4:-15801034 | MS.gene060562:CDS |
| AGCAATTCCATTATGCCGCT+CGG | 0.539353 | 8.4:+15800998 | None:intergenic |
| GCCAGTTACTAATAGCCAAA+AGG | 0.540094 | 8.4:-15800763 | MS.gene060562:CDS |
| TACGGATTGGACGCTGGTGG+CGG | 0.541776 | 8.4:+15799723 | None:intergenic |
| AGCGTCCAATCCGTAGGTGG+TGG | 0.542856 | 8.4:-15799715 | MS.gene060562:CDS |
| TTTCCTGCAAGCATGAATGC+TGG | 0.544053 | 8.4:-15801599 | MS.gene060562:CDS |
| AACAACCTGGTAATGCGAGC+TGG | 0.545399 | 8.4:+15800635 | None:intergenic |
| ACCAGCTACTGCTACATGCT+CGG | 0.547168 | 8.4:-15799668 | MS.gene060562:CDS |
| CTTTGCAGAATCTGATGAGT+CGG | 0.547663 | 8.4:+15801733 | None:intergenic |
| GCTAATGTTCATGAGTGAGT+TGG | 0.552985 | 8.4:-15800739 | MS.gene060562:CDS |
| CCGAGAGGCGAAGAATAACA+TGG | 0.557609 | 8.4:-15799762 | MS.gene060562:CDS |
| CAAGCCAACCGTCGAAACAA+AGG | 0.561984 | 8.4:+15800666 | None:intergenic |
| CAGTTCTGCATAGAATCTAT+GGG | 0.572378 | 8.4:-15801091 | MS.gene060562:CDS |
| AACATCTTTAAACGATAGAG+AGG | 0.586528 | 8.4:+15801559 | None:intergenic |
| AAGTTTCGTTCGAGTAGTGG+TGG | 0.590711 | 8.4:-15801311 | MS.gene060562:CDS |
| ACATCTTTAAACGATAGAGA+GGG | 0.592218 | 8.4:+15801560 | None:intergenic |
| CTACTCGAACGAAACTTAGG+TGG | 0.596175 | 8.4:+15801317 | None:intergenic |
| ACCACCTACGGATTGGACGC+TGG | 0.601541 | 8.4:+15799717 | None:intergenic |
| ACTTGCAGGTGAGACCAAGC+AGG | 0.619708 | 8.4:+15801257 | None:intergenic |
| TACTCGAACGAAACTTAGGT+GGG | 0.627591 | 8.4:+15801318 | None:intergenic |
| ACCAGCGTCCAATCCGTAGG+TGG | 0.628151 | 8.4:-15799718 | MS.gene060562:CDS |
| AACAAAAGCATGATCTACGT+GGG | 0.634366 | 8.4:+15801172 | None:intergenic |
| AAACAAAAGCATGATCTACG+TGG | 0.636662 | 8.4:+15801171 | None:intergenic |
| ACCTACGGATTGGACGCTGG+TGG | 0.656871 | 8.4:+15799720 | None:intergenic |
| GCCACCAGCGTCCAATCCGT+AGG | 0.658375 | 8.4:-15799721 | MS.gene060562:CDS |
| GATGCTATCTCAAATGGACG+AGG | 0.659273 | 8.4:-15799845 | MS.gene060562:CDS |
| TAGCATGGCTGAATTCCAGA+AGG | 0.663321 | 8.4:-15800697 | MS.gene060562:CDS |
| CAGATGAAACAAAATCAACA+AGG | 0.673447 | 8.4:+15801414 | None:intergenic |
| ATGCCAACGCAAGATCGAAG+AGG | 0.677288 | 8.4:-15799809 | MS.gene060562:CDS |
| CGAGAGGCGAAGAATAACAT+GGG | 0.679780 | 8.4:-15799761 | MS.gene060562:CDS |
| CATCTTTAAACGATAGAGAG+GGG | 0.686542 | 8.4:+15801561 | None:intergenic |
| GACCAAGCAGGATCAAACAC+AGG | 0.696221 | 8.4:+15801269 | None:intergenic |
| ACAAGTGCTGAGAACACGAG+AGG | 0.732134 | 8.4:+15799928 | None:intergenic |
| AATCAAGTGATGTAGCCGAG+AGG | 0.771534 | 8.4:-15799777 | MS.gene060562:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTATAACAAAAGATAAAAT+AGG | + | chr8.4:15801091-15801110 | None:intergenic | 15.0% |
| !! | ATGATAAATACCAATAGATT+TGG | + | chr8.4:15800567-15800586 | None:intergenic | 20.0% |
| !! | CAAATTAAATGTTGTGAAAA+GGG | - | chr8.4:15799800-15799819 | MS.gene060562:CDS | 20.0% |
| !! | TGATAAATACCAATAGATTT+GGG | + | chr8.4:15800566-15800585 | None:intergenic | 20.0% |
| !! | TTAAGTAACTATAAATTGCA+AGG | + | chr8.4:15801338-15801357 | None:intergenic | 20.0% |
| !!! | AAACAGCTTATAACTTTTTA+TGG | - | chr8.4:15801053-15801072 | MS.gene060562:CDS | 20.0% |
| !!! | AACATTTAATTTGCTTGAAA+TGG | + | chr8.4:15799793-15799812 | None:intergenic | 20.0% |
| ! | AACAACTTATGAAATGTCAT+AGG | + | chr8.4:15800994-15801013 | None:intergenic | 25.0% |
| ! | CATATGAAATGCTTAGATAT+TGG | + | chr8.4:15801303-15801322 | None:intergenic | 25.0% |
| ! | CTAACAGATTTCCTTATAAA+AGG | + | chr8.4:15800389-15800408 | None:intergenic | 25.0% |
| ! | GCAAATTAAATGTTGTGAAA+AGG | - | chr8.4:15799799-15799818 | MS.gene060562:CDS | 25.0% |
| !! | ATATTTTCTTGTGATTGTTC+AGG | - | chr8.4:15801408-15801427 | MS.gene060562:CDS | 25.0% |
| !!! | AAGAGCACAAAATATTTTTG+TGG | - | chr8.4:15800516-15800535 | MS.gene060562:intron | 25.0% |
| AACAAACTGTTTATCCAAAC+TGG | - | chr8.4:15801167-15801186 | MS.gene060562:CDS | 30.0% | |
| AACATCTTTAAACGATAGAG+AGG | + | chr8.4:15799880-15799899 | None:intergenic | 30.0% | |
| AAGAAAGATGCTATCTCAAA+TGG | - | chr8.4:15801585-15801604 | MS.gene060562:CDS | 30.0% | |
| AAGAACTTATGAGACTGTTT+GGG | - | chr8.4:15800951-15800970 | MS.gene060562:CDS | 30.0% | |
| ACATCTTTAAACGATAGAGA+GGG | + | chr8.4:15799879-15799898 | None:intergenic | 30.0% | |
| CAAACAGATACTAATGTACA+AGG | + | chr8.4:15800900-15800919 | None:intergenic | 30.0% | |
| CAGATGAAACAAAATCAACA+AGG | + | chr8.4:15800025-15800044 | None:intergenic | 30.0% | |
| CATAGATAAGGATCAAAGAT+TGG | - | chr8.4:15800616-15800635 | MS.gene060562:intron | 30.0% | |
| CATTGTACAGTTCATAGATA+AGG | - | chr8.4:15800604-15800623 | MS.gene060562:intron | 30.0% | |
| CTTGTACATTAGTATCTGTT+TGG | - | chr8.4:15800898-15800917 | MS.gene060562:CDS | 30.0% | |
| GGTTCAACTTACTGATAAAA+AGG | + | chr8.4:15799923-15799942 | None:intergenic | 30.0% | |
| GTATTTCAGTGTACAAATGT+TGG | - | chr8.4:15799762-15799781 | MS.gene060562:CDS | 30.0% | |
| TAAAGGGACTATTGAAGTAT+TGG | - | chr8.4:15800651-15800670 | MS.gene060562:CDS | 30.0% | |
| TAAGAACTTATGAGACTGTT+TGG | - | chr8.4:15800950-15800969 | MS.gene060562:CDS | 30.0% | |
| TAGAATCTATGGGAAATTCA+TGG | - | chr8.4:15800355-15800374 | MS.gene060562:intron | 30.0% | |
| TATCATAAACTTTGCAGCAA+AGG | + | chr8.4:15799944-15799963 | None:intergenic | 30.0% | |
| TCAAACAATCTCTTTCTCTA+GGG | + | chr8.4:15800322-15800341 | None:intergenic | 30.0% | |
| TGAGGATATTGGATTACAAA+TGG | - | chr8.4:15801197-15801216 | MS.gene060562:CDS | 30.0% | |
| TTCAAACAATCTCTTTCTCT+AGG | + | chr8.4:15800323-15800342 | None:intergenic | 30.0% | |
| TTTGTAATCCAATATCCTCA+TGG | + | chr8.4:15801197-15801216 | None:intergenic | 30.0% | |
| ! | ATTTTGTGCTCTTCTTTCAA+TGG | + | chr8.4:15800509-15800528 | None:intergenic | 30.0% |
| !! | GCACAAAATATTTTTGTGGA+AGG | - | chr8.4:15800520-15800539 | MS.gene060562:intron | 30.0% |
| !! | TGATTTTGTTTCATCTGGTT+TGG | - | chr8.4:15800028-15800047 | MS.gene060562:intron | 30.0% |
| !!! | ATTTTTGGGAGTGTTATTAG+TGG | - | chr8.4:15800473-15800492 | MS.gene060562:intron | 30.0% |
| !!! | CTTGTTGATTTTGTTTCATC+TGG | - | chr8.4:15800023-15800042 | MS.gene060562:intron | 30.0% |
| ACAGATACTAATGTACAAGG+AGG | + | chr8.4:15800897-15800916 | None:intergenic | 35.0% | |
| ACAGTTCTGCATAGAATCTA+TGG | - | chr8.4:15800344-15800363 | MS.gene060562:intron | 35.0% | |
| ATGGGAAATTCATGGTTCAT+AGG | - | chr8.4:15800363-15800382 | MS.gene060562:intron | 35.0% | |
| CAGTTCTGCATAGAATCTAT+GGG | - | chr8.4:15800345-15800364 | MS.gene060562:intron | 35.0% | |
| CATCTTTAAACGATAGAGAG+GGG | + | chr8.4:15799878-15799897 | None:intergenic | 35.0% | |
| CTGTTAGCAATATCATCTAC+CGG | - | chr8.4:15800402-15800421 | MS.gene060562:intron | 35.0% | |
| GTAGATCATAAACAACTTGC+AGG | + | chr8.4:15800196-15800215 | None:intergenic | 35.0% | |
| TACATAACTCACAGAATCAC+TGG | - | chr8.4:15801530-15801549 | MS.gene060562:CDS | 35.0% | |
| TAGGGTCTTCAGAATCAAAA+AGG | + | chr8.4:15800304-15800323 | None:intergenic | 35.0% | |
| TGGGAAAACCCTAAACAAAT+TGG | + | chr8.4:15800102-15800121 | None:intergenic | 35.0% | |
| TGTTCTGTACAGTTCTTATC+AGG | + | chr8.4:15799975-15799994 | None:intergenic | 35.0% | |
| TTAAAAGAGCAACTAGAACG+AGG | + | chr8.4:15800841-15800860 | None:intergenic | 35.0% | |
| TTGCACAAACCCAAATCTAT+TGG | - | chr8.4:15800554-15800573 | MS.gene060562:intron | 35.0% | |
| ! | AAACAAAAGCATGATCTACG+TGG | + | chr8.4:15800268-15800287 | None:intergenic | 35.0% |
| ! | AACAAAAGCATGATCTACGT+GGG | + | chr8.4:15800267-15800286 | None:intergenic | 35.0% |
| ! | ATAGATTTGGGTTTGTGCAA+AGG | + | chr8.4:15800554-15800573 | None:intergenic | 35.0% |
| ! | ATTGGTTAGCTCAGTGATAA+AGG | - | chr8.4:15800634-15800653 | MS.gene060562:intron | 35.0% |
| ! | GGTTTTGCGTTATAAGATTC+AGG | + | chr8.4:15801474-15801493 | None:intergenic | 35.0% |
| ! | GTGTGCAACCAATTTGTTTA+GGG | - | chr8.4:15800091-15800110 | MS.gene060562:intron | 35.0% |
| ! | TAATGGAATTGCTGAGCTTT+TGG | - | chr8.4:15800448-15800467 | MS.gene060562:intron | 35.0% |
| ! | TCATGAACATTAGCTCCTTT+TGG | + | chr8.4:15800691-15800710 | None:intergenic | 35.0% |
| ! | TCTTTCTTATGTTCTGAGTC+AGG | + | chr8.4:15801573-15801592 | None:intergenic | 35.0% |
| ! | TGGTTCATAGGCCTTTTATA+AGG | - | chr8.4:15800375-15800394 | MS.gene060562:intron | 35.0% |
| ! | TGTGTGCAACCAATTTGTTT+AGG | - | chr8.4:15800090-15800109 | MS.gene060562:intron | 35.0% |
| ! | TTGGTTAGCTCAGTGATAAA+GGG | - | chr8.4:15800635-15800654 | MS.gene060562:intron | 35.0% |
| ! | TTTTCTTGTGATTGTTCAGG+TGG | - | chr8.4:15801411-15801430 | MS.gene060562:CDS | 35.0% |
| !! | CTGAGCTTTTGGAGATTTTT+GGG | - | chr8.4:15800459-15800478 | MS.gene060562:intron | 35.0% |
| !! | GCTGTTTTCATAAGTTATCC+TGG | + | chr8.4:15801040-15801059 | None:intergenic | 35.0% |
| !! | GGCAATAGTACTACTAGTTT+TGG | - | chr8.4:15799735-15799754 | MS.gene060562:CDS | 35.0% |
| !! | TCCTTTTGGCTATTAGTAAC+TGG | + | chr8.4:15800677-15800696 | None:intergenic | 35.0% |
| AGTCTACAAGCTCAAGTTTG+AGG | + | chr8.4:15801257-15801276 | None:intergenic | 40.0% | |
| CAACAAGGTCTAACAACGTT+TGG | + | chr8.4:15800010-15800029 | None:intergenic | 40.0% | |
| CTAATTTCACTAAGCTCTCC+AGG | - | chr8.4:15801019-15801038 | MS.gene060562:CDS | 40.0% | |
| CTTTGCAGAATCTGATGAGT+CGG | + | chr8.4:15799706-15799725 | None:intergenic | 40.0% | |
| GATTCTGCAAAGAGTGATTC+TGG | - | chr8.4:15799714-15799733 | MS.gene060562:CDS | 40.0% | |
| GCCAGTTACTAATAGCCAAA+AGG | - | chr8.4:15800673-15800692 | MS.gene060562:CDS | 40.0% | |
| GCTAATGTTCATGAGTGAGT+TGG | - | chr8.4:15800697-15800716 | MS.gene060562:CDS | 40.0% | |
| GCTCGGTTTCAAAAACAAAC+CGG | + | chr8.4:15800424-15800443 | None:intergenic | 40.0% | |
| TACTCGAACGAAACTTAGGT+GGG | + | chr8.4:15800121-15800140 | None:intergenic | 40.0% | |
| TTGGCTAAGAGAAAACAACC+TGG | + | chr8.4:15800817-15800836 | None:intergenic | 40.0% | |
| ! | GAATCTGATGAGTCGGATTT+TGG | + | chr8.4:15799699-15799718 | None:intergenic | 40.0% |
| ! | TTATGGTGCCTTTGTTTCGA+CGG | - | chr8.4:15800762-15800781 | MS.gene060562:CDS | 40.0% |
| ! | TTATGTTCTGAGTCAGGTTC+AGG | + | chr8.4:15801567-15801586 | None:intergenic | 40.0% |
| !! | GCTGAGCTTTTGGAGATTTT+TGG | - | chr8.4:15800458-15800477 | MS.gene060562:intron | 40.0% |
| !! | TCGGATTTTGGCAACTTCTT+AGG | + | chr8.4:15799687-15799706 | None:intergenic | 40.0% |
| !!! | GGTTTGTTTTTGAAACCGAG+CGG | - | chr8.4:15800423-15800442 | MS.gene060562:intron | 40.0% |
| AAGTTTCGTTCGAGTAGTGG+TGG | - | chr8.4:15800125-15800144 | MS.gene060562:intron | 45.0% | |
| AATCAAGTGATGTAGCCGAG+AGG | - | chr8.4:15801659-15801678 | MS.gene060562:CDS | 45.0% | |
| AGAGCAACTAGAACGAGGAT+TGG | + | chr8.4:15800836-15800855 | None:intergenic | 45.0% | |
| AGCAATTCCATTATGCCGCT+CGG | + | chr8.4:15800441-15800460 | None:intergenic | 45.0% | |
| ATCCAAACTGGACATCCATG+AGG | - | chr8.4:15801179-15801198 | MS.gene060562:CDS | 45.0% | |
| ATCCTCATGGATGTCCAGTT+TGG | + | chr8.4:15801184-15801203 | None:intergenic | 45.0% | |
| CCACTACTCGAACGAAACTT+AGG | + | chr8.4:15800125-15800144 | None:intergenic | 45.0% | |
| CCATGTTATTCTTCGCCTCT+CGG | + | chr8.4:15801677-15801696 | None:intergenic | 45.0% | |
| CCTAAGTTTCGTTCGAGTAG+TGG | - | chr8.4:15800122-15800141 | MS.gene060562:intron | 45.0% | |
| CGAGAGGCGAAGAATAACAT+GGG | - | chr8.4:15801675-15801694 | MS.gene060562:CDS | 45.0% | |
| CTACTCGAACGAAACTTAGG+TGG | + | chr8.4:15800122-15800141 | None:intergenic | 45.0% | |
| CTGGACATCCATGAGGATAT+TGG | - | chr8.4:15801186-15801205 | MS.gene060562:CDS | 45.0% | |
| GATGCTATCTCAAATGGACG+AGG | - | chr8.4:15801591-15801610 | MS.gene060562:CDS | 45.0% | |
| GGCTGAATTCCAGAAGGTTA+TGG | - | chr8.4:15800745-15800764 | MS.gene060562:CDS | 45.0% | |
| GTGCTCTTCTTTCAATGGCA+AGG | + | chr8.4:15800504-15800523 | None:intergenic | 45.0% | |
| TAGCATGGCTGAATTCCAGA+AGG | - | chr8.4:15800739-15800758 | MS.gene060562:CDS | 45.0% | |
| TCTTGTGATTGTTCAGGTGG+CGG | - | chr8.4:15801414-15801433 | MS.gene060562:CDS | 45.0% | |
| TTTCCTGCAAGCATGAATGC+TGG | - | chr8.4:15799837-15799856 | MS.gene060562:CDS | 45.0% | |
| ! | CGGAACGAGCTCATTTGTTA+TGG | - | chr8.4:15801434-15801453 | MS.gene060562:CDS | 45.0% |
| ! | GTTCATGAGTGAGTTGGAAG+AGG | - | chr8.4:15800703-15800722 | MS.gene060562:CDS | 45.0% |
| ! | TAGCAGTAGCTGGTTTCACT+TGG | + | chr8.4:15801762-15801781 | None:intergenic | 45.0% |
| ! | TTTGAAACCGAGCGGCATAA+TGG | - | chr8.4:15800431-15800450 | MS.gene060562:intron | 45.0% |
| !! | ACAAAGGCACCATAACCTTC+TGG | + | chr8.4:15800757-15800776 | None:intergenic | 45.0% |
| !! | GAGTGAGTTGGAAGAGGTTT+TGG | - | chr8.4:15800709-15800728 | MS.gene060562:CDS | 45.0% |
| !!! | GGTTTTGGAGATGACTAGCA+TGG | - | chr8.4:15800724-15800743 | MS.gene060562:CDS | 45.0% |
| AATATCACCGCCACCACCTA+CGG | + | chr8.4:15801734-15801753 | None:intergenic | 50.0% | |
| ACACCAGCATTCATGCTTGC+AGG | + | chr8.4:15799843-15799862 | None:intergenic | 50.0% | |
| ACCAGCTACTGCTACATGCT+CGG | - | chr8.4:15801768-15801787 | MS.gene060562:CDS | 50.0% | |
| AGCCTGTGTTTGATCCTGCT+TGG | - | chr8.4:15800165-15800184 | MS.gene060562:intron | 50.0% | |
| ATGCCAACGCAAGATCGAAG+AGG | - | chr8.4:15801627-15801646 | MS.gene060562:CDS | 50.0% | |
| CAAGCCAACCGTCGAAACAA+AGG | + | chr8.4:15800773-15800792 | None:intergenic | 50.0% | |
| CCGAGAGGCGAAGAATAACA+TGG | - | chr8.4:15801674-15801693 | MS.gene060562:CDS | 50.0% | |
| CGAGAGGCAGAATCACTTGT+CGG | + | chr8.4:15801495-15801514 | None:intergenic | 50.0% | |
| CTTCCTCTTCGATCTTGCGT+TGG | + | chr8.4:15801633-15801652 | None:intergenic | 50.0% | |
| GACCAAGCAGGATCAAACAC+AGG | + | chr8.4:15800170-15800189 | None:intergenic | 50.0% | |
| TTACACAACGCAGCGATTGC+TGG | + | chr8.4:15800068-15800087 | None:intergenic | 50.0% | |
| ! | AACAACCTGGTAATGCGAGC+TGG | + | chr8.4:15800804-15800823 | None:intergenic | 50.0% |
| !! | ACAAGTGCTGAGAACACGAG+AGG | + | chr8.4:15801511-15801530 | None:intergenic | 50.0% |
| ACCGAGCATGTAGCAGTAGC+TGG | + | chr8.4:15801772-15801791 | None:intergenic | 55.0% | |
| ACTTGCAGGTGAGACCAAGC+AGG | + | chr8.4:15800182-15800201 | None:intergenic | 55.0% | |
| CCTTACCAGCTCGCATTACC+AGG | - | chr8.4:15800796-15800815 | MS.gene060562:CDS | 55.0% | |
| ! | CCTGGTAATGCGAGCTGGTA+AGG | + | chr8.4:15800799-15800818 | None:intergenic | 55.0% |
| ! | GGTGCCTTTGTTTCGACGGT+TGG | - | chr8.4:15800766-15800785 | MS.gene060562:CDS | 55.0% |
| ACCAGCGTCCAATCCGTAGG+TGG | - | chr8.4:15801718-15801737 | MS.gene060562:CDS | 60.0% | |
| AGCGTCCAATCCGTAGGTGG+TGG | - | chr8.4:15801721-15801740 | MS.gene060562:CDS | 60.0% | |
| ! | GTCCAATCCGTAGGTGGTGG+CGG | - | chr8.4:15801724-15801743 | MS.gene060562:CDS | 60.0% |
| !! | ACCACCTACGGATTGGACGC+TGG | + | chr8.4:15801722-15801741 | None:intergenic | 60.0% |
| !! | ACCTACGGATTGGACGCTGG+TGG | + | chr8.4:15801719-15801738 | None:intergenic | 60.0% |
| !! | TACGGATTGGACGCTGGTGG+CGG | + | chr8.4:15801716-15801735 | None:intergenic | 60.0% |
| CACCGCCACCACCTACGGAT+TGG | + | chr8.4:15801729-15801748 | None:intergenic | 65.0% | |
| GCCACCAGCGTCCAATCCGT+AGG | - | chr8.4:15801715-15801734 | MS.gene060562:CDS | 65.0% | |
| !! | CGCTGGTGGCGGCTTCTTCA+AGG | + | chr8.4:15801705-15801724 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 15799657 | 15801801 | 15799657 | ID=MS.gene060562 |
| chr8.4 | mRNA | 15799657 | 15801801 | 15799657 | ID=MS.gene060562.t1;Parent=MS.gene060562 |
| chr8.4 | exon | 15800641 | 15801801 | 15800641 | ID=MS.gene060562.t1.exon1;Parent=MS.gene060562.t1 |
| chr8.4 | CDS | 15800641 | 15801801 | 15800641 | ID=cds.MS.gene060562.t1;Parent=MS.gene060562.t1 |
| chr8.4 | exon | 15799657 | 15800028 | 15799657 | ID=MS.gene060562.t1.exon2;Parent=MS.gene060562.t1 |
| chr8.4 | CDS | 15799657 | 15800028 | 15799657 | ID=cds.MS.gene060562.t1;Parent=MS.gene060562.t1 |
| Gene Sequence |
| Protein sequence |
