AlfalfaGEDB | MS.gene92988

M. sativa cultivar XinJiangDaYe / MS.gene92988

KEGG: K14505
GO: GO:0005575 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0110165
PFAM: PF00134.26 PF02984.22

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92988.t1	CAA61334.1	99.4	320	2	0	5	324	67	386	2.10E-176	628.2

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92988.t1	P42753	57.0	272	97	5	17	277	63	325	3.6e-73	276.6

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92988.t1	Q40338	99.4	320	2	0	5	324	67	386	1.5e-176	628.2

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049418	MS.gene92988	0.866925	2.00E-65	-1.69E-46
MS.gene049660	MS.gene92988	0.835463	1.65E-56	-1.69E-46
MS.gene049989	MS.gene92988	0.85377	1.92E-61	-1.69E-46
MS.gene050297	MS.gene92988	0.869306	3.42E-66	-1.69E-46
MS.gene050310	MS.gene92988	0.833161	6.25E-56	-1.69E-46
MS.gene05054	MS.gene92988	0.841748	3.94E-58	-1.69E-46
MS.gene050648	MS.gene92988	0.811026	8.60E-51	-1.69E-46
MS.gene051067	MS.gene92988	0.853964	1.69E-61	-1.69E-46
MS.gene051094	MS.gene92988	0.826268	2.98E-54	-1.69E-46
MS.gene051478	MS.gene92988	0.81772	2.85E-52	-1.69E-46
MS.gene051648	MS.gene92988	0.860507	1.97E-63	-1.69E-46
MS.gene051660	MS.gene92988	0.827836	1.26E-54	-1.69E-46
MS.gene052150	MS.gene92988	0.820514	6.59E-53	-1.69E-46
MS.gene052151	MS.gene92988	0.820158	7.95E-53	-1.69E-46
MS.gene053144	MS.gene92988	0.818899	1.54E-52	-1.69E-46
MS.gene053348	MS.gene92988	0.802293	6.01E-49	-1.69E-46
MS.gene053416	MS.gene92988	0.814886	1.23E-51	-1.69E-46
MS.gene053417	MS.gene92988	0.811375	7.23E-51	-1.69E-46
MS.gene053536	MS.gene92988	0.874618	5.87E-68	-1.69E-46
MS.gene053538	MS.gene92988	0.875449	3.06E-68	-1.69E-46
MS.gene053929	MS.gene92988	0.803468	3.44E-49	-1.69E-46
MS.gene054584	MS.gene92988	0.817044	4.04E-52	-1.69E-46
MS.gene054643	MS.gene92988	0.806116	9.62E-50	-1.69E-46
MS.gene054999	MS.gene92988	0.863023	3.35E-64	-1.69E-46
MS.gene055411	MS.gene92988	0.823917	1.07E-53	-1.69E-46
MS.gene055537	MS.gene92988	0.830184	3.39E-55	-1.69E-46
MS.gene055764	MS.gene92988	0.844473	7.40E-59	-1.69E-46
MS.gene056042	MS.gene92988	0.818546	1.85E-52	-1.69E-46
MS.gene056169	MS.gene92988	0.852608	4.13E-61	-1.69E-46
MS.gene056228	MS.gene92988	0.833415	5.40E-56	-1.69E-46
MS.gene056526	MS.gene92988	0.843233	1.59E-58	-1.69E-46
MS.gene057004	MS.gene92988	0.845868	3.10E-59	-1.69E-46
MS.gene057082	MS.gene92988	0.833312	5.73E-56	-1.69E-46
MS.gene058196	MS.gene92988	0.819686	1.02E-52	-1.69E-46
MS.gene058197	MS.gene92988	0.861919	7.31E-64	-1.69E-46
MS.gene058198	MS.gene92988	0.858634	7.20E-63	-1.69E-46
MS.gene058823	MS.gene92988	0.830215	3.33E-55	-1.69E-46
MS.gene05894	MS.gene92988	0.849019	4.23E-60	-1.69E-46
MS.gene059300	MS.gene92988	0.887555	1.29E-72	-1.69E-46
MS.gene059424	MS.gene92988	0.873898	1.03E-67	-1.69E-46
MS.gene059425	MS.gene92988	0.801739	7.81E-49	-1.69E-46
MS.gene05970	MS.gene92988	0.804088	2.55E-49	-1.69E-46
MS.gene05971	MS.gene92988	0.807032	6.16E-50	-1.69E-46
MS.gene059778	MS.gene92988	0.805343	1.40E-49	-1.69E-46
MS.gene060473	MS.gene92988	0.816078	6.66E-52	-1.69E-46
MS.gene060492	MS.gene92988	0.85045	1.69E-60	-1.69E-46
MS.gene060562	MS.gene92988	0.800952	1.13E-48	-1.69E-46
MS.gene060565	MS.gene92988	0.817433	3.31E-52	-1.69E-46
MS.gene06057	MS.gene92988	0.860473	2.02E-63	-1.69E-46
MS.gene061260	MS.gene92988	0.801302	9.60E-49	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene92988	MS.gene027748	PPI
MS.gene92988	MS.gene78707	PPI
MS.gene92988	MS.gene020406	PPI
MS.gene92988	MS.gene29142	PPI
MS.gene92988	MS.gene48441	PPI
MS.gene92988	MS.gene013042	PPI
MS.gene92988	MS.gene44271	PPI
MS.gene92988	MS.gene86240	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92988.t1	MTR_1g107535	96.262	321	11	1	5	324	64	384	0.0	638
MS.gene92988.t1	MTR_4g094942	53.918	319	136	5	5	318	43	355	8.24e-114	334
MS.gene92988.t1	MTR_3g102310	57.516	306	115	8	5	303	47	344	3.29e-111	327
MS.gene92988.t1	MTR_5g032550	36.604	265	153	3	48	308	92	345	1.11e-47	164
MS.gene92988.t1	MTR_4g080990	33.460	263	162	7	14	271	59	313	1.36e-45	158
MS.gene92988.t1	MTR_3g100710	35.433	254	152	5	34	280	82	330	1.37e-42	150
MS.gene92988.t1	MTR_5g032550	42.690	171	98	0	48	218	92	262	7.33e-42	146
MS.gene92988.t1	MTR_5g035360	38.839	224	126	2	36	250	56	277	1.33e-39	142
MS.gene92988.t1	MTR_8g063120	38.208	212	129	1	45	256	91	300	7.72e-39	140
MS.gene92988.t1	MTR_8g063120	40.462	173	94	1	34	197	71	243	6.63e-36	131
MS.gene92988.t1	MTR_5g065830	31.890	254	164	3	46	294	86	335	8.49e-34	127
MS.gene92988.t1	MTR_8g068950	33.047	233	136	6	48	270	108	330	9.86e-30	117
MS.gene92988.t1	MTR_5g015670	33.663	202	123	5	44	242	99	292	1.53e-29	115
MS.gene92988.t1	MTR_3g103080	40.523	153	87	2	12	164	34	182	4.77e-29	114
MS.gene92988.t1	MTR_3g100710	33.333	201	123	4	86	280	106	301	3.43e-25	103
MS.gene92988.t1	MTR_2g011500	32.484	157	100	2	50	206	86	236	2.12e-22	95.5
MS.gene92988.t1	MTR_2g089490	30.159	252	147	9	63	299	64	301	2.95e-22	95.1
MS.gene92988.t1	MTR_2g089490	30.120	249	148	8	63	299	64	298	6.22e-22	94.4
MS.gene92988.t1	MTR_4g095790	30.151	199	135	4	11	206	31	228	3.30e-14	72.4
MS.gene92988.t1	MTR_3g102530	32.484	157	95	6	52	204	124	273	7.20e-11	62.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92988.t1	AT4G34160	60.996	241	85	2	5	245	51	282	1.23e-98	296
MS.gene92988.t1	AT5G67260	48.726	314	142	6	13	320	65	365	1.37e-92	280
MS.gene92988.t1	AT5G67260	49.673	306	135	6	13	312	65	357	2.89e-90	275
MS.gene92988.t1	AT3G50070	45.538	325	163	5	1	321	45	359	4.93e-88	268
MS.gene92988.t1	AT2G22490	35.931	231	135	3	48	270	97	322	5.99e-44	154
MS.gene92988.t1	AT2G22490	35.776	232	135	4	48	270	97	323	3.16e-42	150
MS.gene92988.t1	AT1G70210	38.424	203	125	0	48	250	82	284	5.57e-41	146
MS.gene92988.t1	AT5G65420	48.718	117	60	0	48	164	78	194	1.68e-35	130
MS.gene92988.t1	AT5G65420	49.138	116	59	0	48	163	78	193	1.91e-35	129
MS.gene92988.t1	AT5G65420	49.138	116	59	0	48	163	78	193	4.03e-35	130
MS.gene92988.t1	AT5G65420	45.238	126	59	1	48	163	78	203	5.99e-33	124
MS.gene92988.t1	AT5G10440	35.577	208	132	2	1	206	21	228	1.44e-30	117
MS.gene92988.t1	AT5G10440	39.024	164	99	1	1	163	21	184	3.82e-30	114
MS.gene92988.t1	AT4G03270	31.164	292	173	10	8	287	15	290	1.72e-24	101
MS.gene92988.t1	AT4G03270	31.164	292	172	11	8	287	15	289	8.00e-23	96.7
MS.gene92988.t1	AT4G37630	36.806	144	82	3	29	164	45	187	1.50e-21	92.4
MS.gene92988.t1	AT4G37630	36.986	146	81	4	29	164	45	189	5.25e-21	90.9
MS.gene92988.t1	AT4G37630	36.986	146	81	4	29	164	45	189	1.36e-20	90.9
MS.gene92988.t1	AT5G02110	25.180	278	186	8	44	315	74	335	1.12e-19	88.6
MS.gene92988.t1	AT5G02110	25.541	231	150	8	91	315	92	306	5.39e-15	74.7

Find 41 sgRNAs with CRISPR-Local

Find 75 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTTAAAGTCAATGCTCATTA+TGG	0.232843	1.2:-80325534	MS.gene92988:CDS
ATCTTCATTGGGAGTTTCTT+AGG	0.261503	1.2:-80325121	MS.gene92988:CDS
TGAATTTGTCACCGATTAAC+AGG	0.270558	1.2:-80324291	MS.gene92988:CDS
GATTGAAAACTAATCTTCAT+TGG	0.293518	1.2:-80325133	MS.gene92988:CDS
CTTACAAATGCAAATAATTA+TGG	0.328803	1.2:-80324472	MS.gene92988:CDS
TTGCTGTTAACTATCTTGAT+AGG	0.355913	1.2:-80325488	MS.gene92988:CDS
TTTATAGATTCAAGATTTGT+TGG	0.378968	1.2:-80324892	MS.gene92988:intron
TTCTTGTTGAGTTATCTCTT+TGG	0.382076	1.2:+80325635	None:intergenic
TGATTCTGTCAACACTGAAA+TGG	0.427443	1.2:-80325211	MS.gene92988:CDS
TTCTTGGTCTTCTTAAACAC+AGG	0.430266	1.2:+80324328	None:intergenic
ATTGAAAACTAATCTTCATT+GGG	0.430502	1.2:-80325132	MS.gene92988:CDS
TTCTAGATCACATTATAAGA+AGG	0.447293	1.2:-80325160	MS.gene92988:CDS
CCGACAATGACCCTGTTAAT+CGG	0.454527	1.2:+80324280	None:intergenic
TATCATCACTCTGTTCAATC+TGG	0.455099	1.2:+80324821	None:intergenic
GATCACATTATAAGAAGGCT+TGG	0.460558	1.2:-80325155	MS.gene92988:CDS
ATTACGCCACTTGGACTACC+AGG	0.474746	1.2:+80324424	None:intergenic
AGATACTAAATATGTGTTTG+AGG	0.495892	1.2:-80325261	MS.gene92988:CDS
AGAAAAGAGTGTGTTGTCAC+TGG	0.519215	1.2:+80325179	None:intergenic
GGCAAAGACTATTCAGAGAA+TGG	0.519295	1.2:-80325240	MS.gene92988:CDS
ACAGCATCAATTACGCCACT+TGG	0.527358	1.2:+80324415	None:intergenic
CCGATTAACAGGGTCATTGT+CGG	0.532014	1.2:-80324280	MS.gene92988:CDS
TTTAAGAAGACCAAGAATCA+AGG	0.533821	1.2:-80324322	MS.gene92988:CDS
CACGTCGTGAAGCTGTTGAA+TGG	0.536577	1.2:-80325560	MS.gene92988:CDS
ATTGAACAGAGTGATGATAA+TGG	0.537100	1.2:-80324817	MS.gene92988:CDS
CTGATGGTTCTAACGATTCG+TGG	0.539073	1.2:-80324384	MS.gene92988:CDS
TGGTTGTGTTCCTTCTGTGT+TGG	0.540643	1.2:-80324872	MS.gene92988:CDS
CGAAAATATGAAGAAATCCC+TGG	0.561909	1.2:-80324442	MS.gene92988:CDS
AACATGCAACATTGTAGCAG+TGG	0.604318	1.2:+80324849	None:intergenic
CTTCTTAAACACAGGCTCTG+AGG	0.608564	1.2:+80324336	None:intergenic
ACTTGAAGGTCTAAGAGAAG+AGG	0.611584	1.2:+80325363	None:intergenic
GTAGCAGTGGCCAACACAGA+AGG	0.618074	1.2:+80324862	None:intergenic
TTCTAACGATTCGTGGACAG+TGG	0.621696	1.2:-80324377	MS.gene92988:CDS
CATTCAACAGCTTCACGACG+TGG	0.624467	1.2:+80325561	None:intergenic
TCTAACGATTCGTGGACAGT+GGG	0.629045	1.2:-80324376	MS.gene92988:CDS
GCAACAAGCTGAATCATCCA+TGG	0.629983	1.2:+80325432	None:intergenic
TAATGTTCTCAAAATCAGCA+AGG	0.638487	1.2:-80324770	MS.gene92988:intron
GAATTTGTCACCGATTAACA+GGG	0.642593	1.2:-80324290	MS.gene92988:CDS
TTACGCCACTTGGACTACCA+GGG	0.660070	1.2:+80324425	None:intergenic
GAAATCCCTGGTAGTCCAAG+TGG	0.669163	1.2:-80324430	MS.gene92988:CDS
ACAGAGTGATGATAATGGTG+TGG	0.694988	1.2:-80324812	MS.gene92988:CDS
TCAACAAGAAACATATTACG+AGG	0.716642	1.2:-80325622	MS.gene92988:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AAATTAAACATAAAGTATTA+AGG	+	chr1.2:80325508-80325527	None:intergenic	10.0%
!!!	TTATGTTTGTTTGTTTTTTA+AGG	-	chr1.2:80324930-80324949	MS.gene92988:intron	15.0%
!!	AAACAAACAAACATAAGAAA+AGG	+	chr1.2:80324926-80324945	None:intergenic	20.0%
!!	AACAAACAAACATAAGAAAA+GGG	+	chr1.2:80324925-80324944	None:intergenic	20.0%
!!	AACAACAAACTATGATATAT+TGG	-	chr1.2:80324482-80324501	MS.gene92988:CDS	20.0%
!!	AATTTAATAGAACTACTCAA+TGG	-	chr1.2:80325542-80325561	MS.gene92988:CDS	20.0%
!!	ATTGAAAACTAATCTTCATT+GGG	-	chr1.2:80325086-80325105	MS.gene92988:intron	20.0%
!!	ATTTAATAGAACTACTCAAT+GGG	-	chr1.2:80325543-80325562	MS.gene92988:CDS	20.0%
!!	CTTACAAATGCAAATAATTA+TGG	-	chr1.2:80325746-80325765	MS.gene92988:intron	20.0%
!!	CTTTGTTCATTATAAAAAGA+AGG	+	chr1.2:80324283-80324302	None:intergenic	20.0%
!!	TTTATAGATTCAAGATTTGT+TGG	-	chr1.2:80325326-80325345	MS.gene92988:intron	20.0%
!!!	CTTCTTTTTATAATGAACAA+AGG	-	chr1.2:80324281-80324300	MS.gene92988:CDS	20.0%
!	AGATACTAAATATGTGTTTG+AGG	-	chr1.2:80324957-80324976	MS.gene92988:intron	25.0%
!	GATTGAAAACTAATCTTCAT+TGG	-	chr1.2:80325085-80325104	MS.gene92988:intron	25.0%
!	TAAACAAAAAACACATGCAA+AGG	+	chr1.2:80325687-80325706	None:intergenic	25.0%
!	TCATACACAATATACACATA+TGG	+	chr1.2:80325570-80325589	None:intergenic	25.0%
!	TTCTAGATCACATTATAAGA+AGG	-	chr1.2:80325058-80325077	MS.gene92988:intron	25.0%
!!!	TGAAAGAGTACTAAAAATGT+TGG	+	chr1.2:80325164-80325183	None:intergenic	25.0%
	ACTGTGATGAAGAAGAAAAA+TGG	-	chr1.2:80324406-80324425	MS.gene92988:CDS	30.0%
	ATAGAAGATAACGTACTTGA+AGG	+	chr1.2:80324872-80324891	None:intergenic	30.0%
	ATTGAACAGAGTGATGATAA+TGG	-	chr1.2:80325401-80325420	MS.gene92988:CDS	30.0%
	ATTTCCAAAAAGAGAAACCA+TGG	-	chr1.2:80324769-80324788	MS.gene92988:intron	30.0%
	CTGTGATGAAGAAGAAAAAT+GGG	-	chr1.2:80324407-80324426	MS.gene92988:CDS	30.0%
	CTTAAAGTCAATGCTCATTA+TGG	-	chr1.2:80324684-80324703	MS.gene92988:intron	30.0%
	TAACAAAAGCAGAGGTAAAA+GGG	+	chr1.2:80324517-80324536	None:intergenic	30.0%
	TAATGTTCTCAAAATCAGCA+AGG	-	chr1.2:80325448-80325467	MS.gene92988:CDS	30.0%
	TCAACAAGAAACATATTACG+AGG	-	chr1.2:80324596-80324615	MS.gene92988:intron	30.0%
	TTCTTGTTGAGTTATCTCTT+TGG	+	chr1.2:80324586-80324605	None:intergenic	30.0%
	TTTAAGAAGACCAAGAATCA+AGG	-	chr1.2:80325896-80325915	MS.gene92988:intron	30.0%
!	CATATTTTGTCCTTGATTCT+TGG	+	chr1.2:80325909-80325928	None:intergenic	30.0%
!	CTTCTTCTATCTGTACTTTT+AGG	-	chr1.2:80325132-80325151	MS.gene92988:CDS	30.0%
!	TTGCTGTTAACTATCTTGAT+AGG	-	chr1.2:80324730-80324749	MS.gene92988:intron	30.0%
!!	ATGGTTTCTCTTTTTGGAAA+TGG	+	chr1.2:80324770-80324789	None:intergenic	30.0%
!!!	TGCATGTGTTTTTTGTTTAC+AGG	-	chr1.2:80325688-80325707	MS.gene92988:intron	30.0%
	ATCTTCATTGGGAGTTTCTT+AGG	-	chr1.2:80325097-80325116	MS.gene92988:CDS	35.0%
	ATCTTCTTCAGTGAAGAAGA+GGG	+	chr1.2:80324315-80324334	None:intergenic	35.0%
	CGAAAATATGAAGAAATCCC+TGG	-	chr1.2:80325776-80325795	MS.gene92988:intron	35.0%
	CTAACAAAAGCAGAGGTAAA+AGG	+	chr1.2:80324518-80324537	None:intergenic	35.0%
	GATCACATTATAAGAAGGCT+TGG	-	chr1.2:80325063-80325082	MS.gene92988:intron	35.0%
	TATCATCACTCTGTTCAATC+TGG	+	chr1.2:80325400-80325419	None:intergenic	35.0%
	TGATTCTGTCAACACTGAAA+TGG	-	chr1.2:80325007-80325026	MS.gene92988:intron	35.0%
	TTCTGTTCTAACAAAAGCAG+AGG	+	chr1.2:80324525-80324544	None:intergenic	35.0%
!	AAATGGGAAGATGATGATGA+AGG	-	chr1.2:80324423-80324442	MS.gene92988:CDS	35.0%
!	AAGTGTGTTGTTGAAGTTGT+TGG	+	chr1.2:80324365-80324384	None:intergenic	35.0%
!	GAATTTGTCACCGATTAACA+GGG	-	chr1.2:80325928-80325947	MS.gene92988:intron	35.0%
!	TCATCCATGGTTTCTCTTTT+TGG	+	chr1.2:80324776-80324795	None:intergenic	35.0%
!	TGAATTTGTCACCGATTAAC+AGG	-	chr1.2:80325927-80325946	MS.gene92988:intron	35.0%
!	TTCTTGGTCTTCTTAAACAC+AGG	+	chr1.2:80325893-80325912	None:intergenic	35.0%
!!!	GATGCTGTTTTTAGTTCTGA+TGG	-	chr1.2:80325818-80325837	MS.gene92988:intron	35.0%
	AACATGCAACATTGTAGCAG+TGG	+	chr1.2:80325372-80325391	None:intergenic	40.0%
	ACTTGAAGGTCTAAGAGAAG+AGG	+	chr1.2:80324858-80324877	None:intergenic	40.0%
	CATCTTCTTCAGTGAAGAAG+AGG	+	chr1.2:80324316-80324335	None:intergenic	40.0%
	CTCTTCTTCACTGAAGAAGA+TGG	-	chr1.2:80324314-80324333	MS.gene92988:CDS	40.0%
	GAAGGAGAAGTTGTAGATGA+AGG	-	chr1.2:80324441-80324460	MS.gene92988:CDS	40.0%
	GGCAAAGACTATTCAGAGAA+TGG	-	chr1.2:80324978-80324997	MS.gene92988:intron	40.0%
!	AGAAAAGAGTGTGTTGTCAC+TGG	+	chr1.2:80325042-80325061	None:intergenic	40.0%
!	GGTGATTGTGATGATGATGA+TGG	+	chr1.2:80324344-80324363	None:intergenic	40.0%
!!	ACAGAGTGATGATAATGGTG+TGG	-	chr1.2:80325406-80325425	MS.gene92988:CDS	40.0%
	ACAGCATCAATTACGCCACT+TGG	+	chr1.2:80325806-80325825	None:intergenic	45.0%
	CCGACAATGACCCTGTTAAT+CGG	+	chr1.2:80325941-80325960	None:intergenic	45.0%
	CCGATTAACAGGGTCATTGT+CGG	-	chr1.2:80325938-80325957	MS.gene92988:intron	45.0%
	CTTCTTAAACACAGGCTCTG+AGG	+	chr1.2:80325885-80325904	None:intergenic	45.0%
	GCAACAAGCTGAATCATCCA+TGG	+	chr1.2:80324789-80324808	None:intergenic	45.0%
	TCTAACGATTCGTGGACAGT+GGG	-	chr1.2:80325842-80325861	MS.gene92988:intron	45.0%
	TGGTTGTGTTCCTTCTGTGT+TGG	-	chr1.2:80325346-80325365	MS.gene92988:intron	45.0%
	TTCTAACGATTCGTGGACAG+TGG	-	chr1.2:80325841-80325860	MS.gene92988:intron	45.0%
!!	CTGATGGTTCTAACGATTCG+TGG	-	chr1.2:80325834-80325853	MS.gene92988:intron	45.0%
	ATTACGCCACTTGGACTACC+AGG	+	chr1.2:80325797-80325816	None:intergenic	50.0%
	CACGTCGTGAAGCTGTTGAA+TGG	-	chr1.2:80324658-80324677	MS.gene92988:intron	50.0%
	CATTCAACAGCTTCACGACG+TGG	+	chr1.2:80324660-80324679	None:intergenic	50.0%
	GAAATCCCTGGTAGTCCAAG+TGG	-	chr1.2:80325788-80325807	MS.gene92988:intron	50.0%
	GCAAGGTCAGTAGTAGTAGC+TGG	-	chr1.2:80325465-80325484	MS.gene92988:CDS	50.0%
	TTACGCCACTTGGACTACCA+GGG	+	chr1.2:80325796-80325815	None:intergenic	50.0%
!	TCAGTGAAGAAGAGGGTGTG+TGG	+	chr1.2:80324308-80324327	None:intergenic	50.0%
	GTAGCAGTGGCCAACACAGA+AGG	+	chr1.2:80325359-80325378	None:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	80324252	80325988	80324252	ID=MS.gene92988
chr1.2	mRNA	80324252	80325988	80324252	ID=MS.gene92988.t1;Parent=MS.gene92988
chr1.2	exon	80325970	80325988	80325970	ID=MS.gene92988.t1.exon1;Parent=MS.gene92988.t1
chr1.2	CDS	80325970	80325988	80325970	ID=cds.MS.gene92988.t1;Parent=MS.gene92988.t1
chr1.2	exon	80325365	80325702	80325365	ID=MS.gene92988.t1.exon2;Parent=MS.gene92988.t1
chr1.2	CDS	80325365	80325702	80325365	ID=cds.MS.gene92988.t1;Parent=MS.gene92988.t1
chr1.2	exon	80325087	80325288	80325087	ID=MS.gene92988.t1.exon3;Parent=MS.gene92988.t1
chr1.2	CDS	80325087	80325288	80325087	ID=cds.MS.gene92988.t1;Parent=MS.gene92988.t1
chr1.2	exon	80324771	80324907	80324771	ID=MS.gene92988.t1.exon4;Parent=MS.gene92988.t1
chr1.2	CDS	80324771	80324907	80324771	ID=cds.MS.gene92988.t1;Parent=MS.gene92988.t1
chr1.2	exon	80324252	80324530	80324252	ID=MS.gene92988.t1.exon5;Parent=MS.gene92988.t1
chr1.2	CDS	80324252	80324530	80324252	ID=cds.MS.gene92988.t1;Parent=MS.gene92988.t1

Gene Sequence

>MS.gene92988

ATGGATGTGAGACTCTTCAGTACTGTTTCCTTCTTTTTATAATGAACAAAGGACCACACACCCTCTTCTTCACTGAAGAAGATGGCTATCCATCATCATCATCACAATCACCAACAACTTCAACAACACACTTCTTCTCTTTTTGATGCACTTTACTGTGATGAAGAAGAAAAATGGGAAGATGATGATGAAGGAGAAGTTGTAGATGAAGGAGAACAAAGTGATGTCACAACAACAAACTATGATATATTGGACTCTACTTCCCTTTTACCTCTGCTTTTGTTAGAACAGAACTTGTTCAATGAAGATGAAGAACTCAACACTCTTTTCTCCAAAGAGATAACTCAACAAGAAACATATTACGAGGATCTGAAAAATGTGATCAACTTTGACTCACTCTCTCAACCACGTCGTGAAGCTGTTGAATGGATGCTTAAAGTCAATGCTCATTATGGTTTCTCTGCTCTCACTGCAACACTTGCTGTTAACTATCTTGATAGGTTTCTTTTAAGCTTCCATTTCCAAAAAGAGAAACCATGGATGATTCAGCTTGTTGCTGTTACTTGCATCTCTTTAGCTGCTAAAGTTGAAGAAACTCAAGTTCCTCTTCTCTTAGACCTTCAAGTACGTTATCTTCTATACTCTAAACATTCTCTTAAGTTGTGTTTTTCCCTTTTCTTATGTTTGTTTGTTTTTTAAGGTGCAAGATACTAAATATGTGTTTGAGGCAAAGACTATTCAGAGAATGGAGCTATTGATTCTGTCAACACTGAAATGGAAGATGCATCCAGTGACAACACACTCTTTTCTAGATCACATTATAAGAAGGCTTGGATTGAAAACTAATCTTCATTGGGAGTTTCTTAGGCGCTGTGAGAATCTTCTTCTATCTGTACTTTTAGGTAAGCACCAACATTTTTAGTACTCTTTCAGTTGCACAACATTATTAGTACTATTCACTACTTATTCAAAAACTTTACTCTTCTTTTGCACAAGTACAAAAAAGAATATAAATAAATAAATAAAGACAAAATGTTGATTTTCTTATGATTTGATTTTGTTATATGCATGTTGTTTATAGATTCAAGATTTGTTGGTTGTGTTCCTTCTGTGTTGGCCACTGCTACAATGTTGCATGTTATAGACCAGATTGAACAGAGTGATGATAATGGTGTGGATTACAAAAATCAGCTTCTTAATGTTCTCAAAATCAGCAAGGTCAGTAGTAGTAGCTGGATATAAGTATGTTCATGCCTTAATACTTTATGTTTAATTTAATACAAGTACTTTAATTTAATAGAACTACTCAATGGGACCATATGTGTATATTGTGTATGAGCATCTTAGATTAGAAATGAATAAATAAATGCTGACAATAGCATTATTTAATGAACATGATAATAAGCACATGATTTGATACTAGTTATTTTTTCCTTTGCATGTGTTTTTTGTTTACAGGAGAAAGTTGATGAATGTTATAATGCGATTCTTCATCTTACAAATGCAAATAATTATGGTCATAAACGAAAATATGAAGAAATCCCTGGTAGTCCAAGTGGCGTAATTGATGCTGTTTTTAGTTCTGATGGTTCTAACGATTCGTGGACAGTGGGAGCATCATCATATTCAACCTCAGAGCCTGTGTTTAAGAAGACCAAGAATCAAGGACAAAATATGAATTTGTCACCGATTAACAGGGTCATTGTCGGAATTCTTGCCACTGCAACCTCTCCTTAA

Protein sequence

>MS.gene92988.t1

MDVRLFKQNLFNEDEELNTLFSKEITQQETYYEDLKNVINFDSLSQPRREAVEWMLKVNAHYGFSALTATLAVNYLDRFLLSFHFQKEKPWMIQLVAVTCISLAAKVEETQVPLLLDLQVQDTKYVFEAKTIQRMELLILSTLKWKMHPVTTHSFLDHIIRRLGLKTNLHWEFLRRCENLLLSVLLDSRFVGCVPSVLATATMLHVIDQIEQSDDNGVDYKNQLLNVLKISKEKVDECYNAILHLTNANNYGHKRKYEEIPGSPSGVIDAVFSSDGSNDSWTVGASSYSTSEPVFKKTKNQGQNMNLSPINRVIVGILATATSP