AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene060599

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060599.t1 MTR_2g076590 84.856 383 49 2 1 374 56 438 0.0 654
MS.gene060599.t1 MTR_2g076490 81.102 381 47 2 1 374 56 418 0.0 630
MS.gene060599.t1 MTR_2g076610 82.609 299 24 3 34 325 19 296 2.50e-175 489
MS.gene060599.t1 MTR_2g076650 66.376 229 52 4 1 220 23 235 1.31e-95 285
MS.gene060599.t1 MTR_1g012550 24.854 342 234 9 36 371 90 414 2.24e-23 102
MS.gene060599.t1 MTR_7g072460 28.308 325 203 11 57 372 101 404 3.72e-22 97.8
MS.gene060599.t1 MTR_2g089440 28.841 371 207 18 38 371 80 430 7.48e-22 97.8
MS.gene060599.t1 MTR_3g031640 29.067 375 222 16 7 355 41 397 3.25e-21 95.9
MS.gene060599.t1 MTR_7g058530 28.205 390 234 15 8 372 51 419 7.35e-21 94.7
MS.gene060599.t1 MTR_3g107070 24.274 379 251 13 5 371 38 392 8.31e-21 94.7
MS.gene060599.t1 MTR_2g089360 29.101 378 197 20 38 371 77 427 1.66e-20 94.0
MS.gene060599.t1 MTR_3g102400 29.577 355 204 19 8 336 48 382 4.50e-20 92.4
MS.gene060599.t1 MTR_3g031580 27.506 389 234 17 7 372 44 407 4.63e-20 92.4
MS.gene060599.t1 MTR_0280s0040 28.158 380 202 21 37 371 76 429 1.03e-19 91.3
MS.gene060599.t1 MTR_3g031610 26.531 392 246 14 7 374 41 414 3.88e-19 89.7
MS.gene060599.t1 MTR_7g092050 27.978 361 210 19 8 348 51 381 1.14e-18 88.2
MS.gene060599.t1 MTR_2g103810 25.937 347 231 11 35 371 82 412 1.77e-18 87.8
MS.gene060599.t1 MTR_3g031600 28.969 359 211 15 7 341 41 379 5.45e-18 86.3
MS.gene060599.t1 MTR_3g031480 27.348 362 214 16 7 341 44 383 7.25e-18 85.9
MS.gene060599.t1 MTR_8g030500 27.833 406 224 21 7 372 33 409 3.20e-17 84.0
MS.gene060599.t1 MTR_2g011160 25.745 369 205 18 8 339 48 384 5.57e-17 82.8
MS.gene060599.t1 MTR_5g067290 33.173 208 109 7 36 221 78 277 5.97e-17 82.0
MS.gene060599.t1 MTR_2g011160 25.745 369 205 18 8 339 48 384 9.22e-17 82.4
MS.gene060599.t1 MTR_3g031500 29.261 352 204 15 41 372 2 328 1.06e-16 82.0
MS.gene060599.t1 MTR_2g011150 27.108 332 189 15 38 339 78 386 1.12e-16 82.0
MS.gene060599.t1 MTR_1g099400 25.320 391 225 16 15 354 45 419 1.17e-16 82.0
MS.gene060599.t1 MTR_2g080080 23.977 342 224 13 38 369 90 405 1.46e-16 81.6
MS.gene060599.t1 MTR_3g031490 25.964 389 249 15 7 372 41 413 1.97e-16 81.3
MS.gene060599.t1 MTR_8g465510 26.163 344 185 13 38 339 72 388 4.38e-16 80.5
MS.gene060599.t1 MTR_3g031470 29.076 368 207 18 7 341 43 389 4.67e-16 80.1
MS.gene060599.t1 MTR_5g067250 27.059 340 190 15 36 341 77 392 7.29e-16 79.7
MS.gene060599.t1 MTR_2g011180 24.561 342 192 15 38 339 76 391 1.75e-15 78.6
MS.gene060599.t1 MTR_8g013600 24.590 366 226 13 38 372 77 423 2.27e-15 78.2
MS.gene060599.t1 MTR_2g011180 24.561 342 192 15 38 339 76 391 2.43e-15 78.2
MS.gene060599.t1 MTR_8g013610 24.595 370 222 14 38 372 78 425 4.17e-15 77.4
MS.gene060599.t1 MTR_2g080100 24.207 347 228 13 38 371 91 415 4.46e-15 77.4
MS.gene060599.t1 MTR_2g011170 25.228 329 202 12 38 339 73 384 4.63e-15 77.0
MS.gene060599.t1 MTR_3g007650 26.963 382 212 20 36 371 75 435 4.64e-15 77.4
MS.gene060599.t1 MTR_2g011170 25.228 329 202 12 38 339 73 384 8.39e-15 76.3
MS.gene060599.t1 MTR_8g465580 25.600 375 215 15 38 373 74 423 1.16e-14 75.9
MS.gene060599.t1 MTR_5g055070 31.527 203 106 8 36 213 67 261 1.80e-14 75.5
MS.gene060599.t1 MTR_2g080090 23.919 347 229 13 38 371 90 414 1.96e-14 75.1
MS.gene060599.t1 MTR_5g055070 31.527 203 106 8 36 213 67 261 2.06e-14 75.1
MS.gene060599.t1 MTR_5g055070 31.527 203 106 8 36 213 67 261 2.10e-14 75.1
MS.gene060599.t1 MTR_6g043510 28.685 251 146 9 38 277 72 300 3.52e-14 74.7
MS.gene060599.t1 MTR_3g020230 26.205 332 193 16 38 339 79 388 6.69e-14 73.6
MS.gene060599.t1 MTR_8g465410 25.867 375 214 16 38 373 74 423 1.40e-13 72.8
MS.gene060599.t1 MTR_2g089290 48.780 82 34 4 38 114 84 162 3.85e-13 71.2
MS.gene060599.t1 MTR_7g056450 24.090 357 182 17 38 344 84 401 6.27e-13 70.5
MS.gene060599.t1 MTR_7g056450 24.090 357 182 17 38 344 74 391 8.25e-13 70.5
MS.gene060599.t1 MTR_3g072800 27.660 235 144 10 38 268 81 293 1.16e-12 69.7
MS.gene060599.t1 MTR_8g465990 25.075 335 196 15 38 339 77 389 1.17e-12 69.7
MS.gene060599.t1 MTR_4g081675 26.608 342 187 17 36 339 73 388 1.62e-12 69.3
MS.gene060599.t1 MTR_3g020320 35.606 132 71 6 38 157 79 208 1.71e-12 69.3
MS.gene060599.t1 MTR_8g465990 25.075 335 196 15 38 339 77 389 1.76e-12 69.3
MS.gene060599.t1 MTR_8g465990 25.075 335 196 15 38 339 77 389 1.91e-12 69.3
MS.gene060599.t1 MTR_8g465470 23.706 367 231 16 38 373 106 454 3.91e-12 68.2
MS.gene060599.t1 MTR_4g081685 26.608 342 185 17 38 339 74 389 7.55e-12 67.4
MS.gene060599.t1 MTR_8g013580 26.939 245 146 9 38 268 84 309 7.71e-12 67.4
MS.gene060599.t1 MTR_1g052880 26.954 371 184 20 38 353 77 415 8.18e-12 67.4
MS.gene060599.t1 MTR_3g051420 34.266 143 72 7 38 159 81 222 9.75e-12 67.0
MS.gene060599.t1 MTR_4g081640 23.824 340 202 14 38 339 74 394 1.48e-11 66.2
MS.gene060599.t1 MTR_3g007510 25.000 388 213 17 36 371 73 434 3.12e-11 65.5
MS.gene060599.t1 MTR_4g091570 24.701 251 161 8 37 273 303 539 3.20e-11 65.5
MS.gene060599.t1 MTR_3g007510 25.000 388 213 17 36 371 73 434 3.39e-11 65.5
MS.gene060599.t1 MTR_3g007510 25.000 388 213 17 36 371 73 434 3.47e-11 65.1
MS.gene060599.t1 MTR_4g081665 24.451 364 214 18 8 339 46 380 5.24e-11 64.7
MS.gene060599.t1 MTR_8g442290 35.766 137 75 5 38 161 88 224 6.95e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060599.t1 AT1G78860 49.740 384 168 6 7 373 59 434 3.88e-129 378
MS.gene060599.t1 AT1G78850 49.610 385 167 8 7 373 59 434 5.70e-128 375
MS.gene060599.t1 AT1G16905 44.103 390 182 7 1 373 52 422 5.72e-110 328
MS.gene060599.t1 AT1G78830 43.797 395 192 9 5 370 61 454 5.73e-104 314
MS.gene060599.t1 AT1G78820 42.785 395 196 9 5 370 61 454 4.60e-101 306
MS.gene060599.t1 AT5G35370 27.577 359 213 15 38 371 86 422 4.10e-26 110
MS.gene060599.t1 AT4G00340 25.799 407 228 15 8 374 40 412 1.94e-19 90.5
MS.gene060599.t1 AT4G00340 27.151 372 205 14 8 346 40 378 2.64e-19 90.1
MS.gene060599.t1 AT4G21390 27.273 330 198 14 38 339 79 394 2.90e-19 90.1
MS.gene060599.t1 AT4G21390 27.273 330 198 14 38 339 79 394 3.43e-19 89.7
MS.gene060599.t1 AT5G24080 26.722 363 207 16 38 354 81 430 4.77e-19 89.4
MS.gene060599.t1 AT3G12000 27.174 368 218 15 8 344 56 404 1.03e-18 87.4
MS.gene060599.t1 AT4G32300 24.267 375 241 14 15 371 61 410 5.99e-18 86.3
MS.gene060599.t1 AT3G51710 26.126 333 212 13 47 372 103 408 9.43e-18 85.1
MS.gene060599.t1 AT5G03700 24.085 328 208 11 58 371 109 409 2.77e-17 83.6
MS.gene060599.t1 AT1G65790 26.935 323 201 11 37 339 78 385 4.77e-17 83.2
MS.gene060599.t1 AT1G65790 26.935 323 201 11 37 339 78 385 4.77e-17 83.2
MS.gene060599.t1 AT1G65790 26.935 323 201 11 37 339 78 385 5.64e-17 83.2
MS.gene060599.t1 AT4G11900 26.718 393 202 19 38 371 81 446 2.38e-16 80.9
MS.gene060599.t1 AT4G11900 26.718 393 202 19 38 371 81 446 2.38e-16 80.9
MS.gene060599.t1 AT4G11900 26.718 393 202 19 38 371 81 446 2.46e-16 81.3
MS.gene060599.t1 AT4G11900 26.718 393 202 19 38 371 81 446 2.46e-16 81.3
MS.gene060599.t1 AT4G11900 26.835 395 203 20 38 373 81 448 2.55e-16 81.3
MS.gene060599.t1 AT4G11900 26.718 393 202 19 38 371 81 446 2.81e-16 80.9
MS.gene060599.t1 AT4G11900 26.718 393 202 19 38 371 81 446 2.81e-16 80.9
MS.gene060599.t1 AT4G11900 26.718 393 202 19 38 371 81 446 2.90e-16 80.9
MS.gene060599.t1 AT4G11900 26.718 393 202 19 38 371 12 377 2.92e-16 80.9
MS.gene060599.t1 AT4G11900 26.718 393 202 19 38 371 12 377 3.00e-16 80.9
MS.gene060599.t1 AT4G21380 26.284 331 197 13 37 339 80 391 4.88e-15 77.0
MS.gene060599.t1 AT4G21380 26.284 331 197 13 37 339 80 391 7.53e-15 76.6
MS.gene060599.t1 AT2G41890 28.754 313 187 14 48 344 91 383 1.55e-14 75.5
MS.gene060599.t1 AT1G11330 25.882 340 201 16 38 343 84 406 2.01e-14 75.1
MS.gene060599.t1 AT1G11330 25.882 340 201 16 38 343 84 406 2.48e-14 75.1
MS.gene060599.t1 AT1G11330 25.882 340 201 16 38 343 84 406 2.58e-14 75.1
MS.gene060599.t1 AT2G19130 23.622 381 222 16 38 373 72 428 1.07e-13 73.2
MS.gene060599.t1 AT1G11303 24.926 337 201 17 38 341 77 394 1.18e-13 72.8
MS.gene060599.t1 AT1G61360 26.331 338 194 16 38 341 69 385 2.25e-13 72.0
MS.gene060599.t1 AT1G65800 26.769 325 203 13 37 339 78 389 3.25e-13 71.2
MS.gene060599.t1 AT1G65800 26.769 325 203 13 37 339 78 389 4.45e-13 71.2
MS.gene060599.t1 AT1G11300 23.512 336 201 15 38 338 77 391 4.27e-12 68.2
MS.gene060599.t1 AT1G11300 23.512 336 201 15 38 338 77 391 4.39e-12 68.2
MS.gene060599.t1 AT4G03230 26.524 328 179 18 58 350 30 330 8.57e-12 67.4
MS.gene060599.t1 AT1G61610 24.633 341 197 17 38 339 79 398 8.15e-11 63.9
MS.gene060599.t1 AT1G11410 23.295 352 192 18 38 343 72 391 8.29e-11 64.3
MS.gene060599.t1 AT1G61610 24.633 341 197 17 38 339 79 398 8.97e-11 63.9

Find 64 sgRNAs with CRISPR-Local

Find 88 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAGAGAGATGTGGAAAATT+TGG 0.163981 2.2:-17393612 MS.gene060599:CDS
GTGCTAGAGTGAAGGCATTT+TGG 0.194306 2.2:+17394330 None:intergenic
CCTCTGGAGAATGGAATATT+TGG 0.242972 2.2:-17393558 MS.gene060599:CDS
TGGTCCTTATAGTTTGGTTT+TGG 0.289630 2.2:-17393964 MS.gene060599:CDS
AATCCATACTCAAATGATTC+TGG 0.297053 2.2:+17393837 None:intergenic
CAGAGAGATGTGGAAAATTT+GGG 0.298081 2.2:-17393611 MS.gene060599:CDS
ATAGTACTTTAACATATCTT+AGG 0.298885 2.2:-17393752 MS.gene060599:CDS
GTTGCCAATTCTACCACTTT+TGG 0.323929 2.2:-17393804 MS.gene060599:CDS
GATCCAGAATCATTTGAGTA+TGG 0.330989 2.2:-17393840 MS.gene060599:CDS
TTTACCAAAAGTGGTAGAAT+TGG 0.337784 2.2:+17393800 None:intergenic
TATCTTAGGCTTGGAATTGA+TGG 0.341629 2.2:-17393738 MS.gene060599:CDS
TAATACAAAGCCAAACCTTT+AGG 0.354199 2.2:+17393939 None:intergenic
TGTTGATGGTCCTTATAGTT+TGG 0.357941 2.2:-17393970 MS.gene060599:CDS
AAGTGTAGTCCTAAGCCTTT+AGG 0.361000 2.2:-17393525 MS.gene060599:CDS
ATAAAGGTGTTGTTGCCTTA+AGG 0.362094 2.2:-17394145 MS.gene060599:CDS
GGCTCCAAAACCAAACTATA+AGG 0.363469 2.2:+17393960 None:intergenic
CAAACAAACACTTCAAATAA+AGG 0.367054 2.2:-17394161 MS.gene060599:CDS
TAGATGTTCAAGATGGTGTT+TGG 0.367668 2.2:-17393689 MS.gene060599:CDS
TGTATTATAAGAGTAAATAT+TGG 0.368951 2.2:-17393923 MS.gene060599:CDS
TTAAATATTGATCAACCAAA+AGG 0.385654 2.2:+17394042 None:intergenic
GATCAATATTTAAAGCCTAA+TGG 0.386664 2.2:-17394032 MS.gene060599:CDS
GTCCTTCAAAACTTGTTAGT+AGG 0.397669 2.2:-17394010 MS.gene060599:CDS
TCATCCTACAGATACCCTTT+TGG 0.400336 2.2:-17394057 MS.gene060599:CDS
TTTCATTACTACAAAATTGA+AGG 0.410194 2.2:-17393480 MS.gene060599:CDS
ACCATTTGAGAGTAACCTTA+AGG 0.414604 2.2:+17394130 None:intergenic
TATATGATCAAATACACTAT+TGG 0.435441 2.2:-17393447 MS.gene060599:CDS
CCCAACACACTTGCAATCCT+TGG 0.436348 2.2:+17393386 None:intergenic
GCCTTAAGGTTACTCTCAAA+TGG 0.450182 2.2:-17394131 MS.gene060599:CDS
AACACCTTGAGTCATCCTTA+TGG 0.455333 2.2:+17393355 None:intergenic
ACTTTAACATATCTTAGGCT+TGG 0.464890 2.2:-17393747 MS.gene060599:CDS
TGTTGGGTATTTCTACCATA+AGG 0.465236 2.2:-17393370 MS.gene060599:CDS
CCAAGGATTGCAAGTGTGTT+GGG 0.487333 2.2:-17393386 MS.gene060599:CDS
TTCACTCTAGCACTTCGAAT+GGG 0.488713 2.2:-17394320 MS.gene060599:CDS
TTGGTAAAAGTATCATTGGT+AGG 0.499228 2.2:-17393785 MS.gene060599:CDS
ATCAAATACACTATTGGTGA+TGG 0.503903 2.2:-17393441 MS.gene060599:CDS
CATACTCCTCCTAAAGGCTT+AGG 0.506091 2.2:+17393516 None:intergenic
GTTAAAGTACTATTCTTCAC+TGG 0.513915 2.2:+17393762 None:intergenic
TAAATATTGATCAACCAAAA+GGG 0.527541 2.2:+17394043 None:intergenic
ATGCTGATGGAAGAATTGTT+TGG 0.528512 2.2:-17394184 MS.gene060599:CDS
CTTGTGTTGGCTAATGCTGA+TGG 0.532407 2.2:-17394197 MS.gene060599:CDS
TCAATGTGTTGGTTGTCCTC+TGG 0.535016 2.2:-17393574 MS.gene060599:CDS
GTTGGTTGTCCTCTGGAGAA+TGG 0.544761 2.2:-17393567 MS.gene060599:CDS
GCATTGCATACTCCTCCTAA+AGG 0.549299 2.2:+17393510 None:intergenic
TACGCATGTGGGTTATATCA+AGG 0.551013 2.2:-17393289 MS.gene060599:CDS
TGGAGAATGGAATATTTGGT+TGG 0.554960 2.2:-17393554 MS.gene060599:CDS
TGTGAGGATAATCAATGTGT+TGG 0.560707 2.2:-17393585 MS.gene060599:CDS
ATAAGGATGACTCAAGGTGT+TGG 0.572407 2.2:-17393353 MS.gene060599:CDS
ACCAAGGATTGCAAGTGTGT+TGG 0.584572 2.2:-17393387 MS.gene060599:CDS
TGTAGTCCTAAGCCTTTAGG+AGG 0.598203 2.2:-17393522 MS.gene060599:CDS
GGAGTAAGCGAAGTTAATTG+TGG 0.599523 2.2:-17393420 MS.gene060599:CDS
CTTCACTCTAGCACTTCGAA+TGG 0.608386 2.2:-17394321 MS.gene060599:CDS
TTTGCAAACTCTTACTAGAG+TGG 0.613085 2.2:-17393319 MS.gene060599:CDS
AGTGGCAAATACTACGCATG+TGG 0.615407 2.2:-17393301 MS.gene060599:CDS
TGGAAAATTTGGGCTTTGTG+AGG 0.616742 2.2:-17393601 MS.gene060599:CDS
CATTCGAAGTGCTAGAGTGA+AGG 0.617248 2.2:+17394322 None:intergenic
TGGGTTTGGGAAGCAAATAG+AGG 0.619163 2.2:-17394269 MS.gene060599:CDS
GTTACTCTCAAATGGTAACA+TGG 0.622365 2.2:-17394123 MS.gene060599:CDS
TGTTGATGGAAATCTTGTGT+TGG 0.627952 2.2:-17394210 MS.gene060599:CDS
TCAACCAAAAGGGTATCTGT+AGG 0.635839 2.2:+17394053 None:intergenic
TTGTGGAAACAAATGTACCA+AGG 0.648353 2.2:-17393403 MS.gene060599:CDS
TGTCAATTGCCAGAGAGATG+TGG 0.651671 2.2:-17393621 MS.gene060599:CDS
CCAAATATTCCATTCTCCAG+AGG 0.664062 2.2:+17393558 None:intergenic
TCTACCATAAGGATGACTCA+AGG 0.669490 2.2:-17393359 MS.gene060599:CDS
GTGGCAAATACTACGCATGT+GGG 0.682570 2.2:-17393300 MS.gene060599:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTATTATAAGAGTAAATAT+TGG - chr2.2:17393729-17393748 MS.gene060599:CDS 15.0%
!! ATAGTACTTTAACATATCTT+AGG - chr2.2:17393900-17393919 MS.gene060599:CDS 20.0%
!! TAAATATTGATCAACCAAAA+GGG + chr2.2:17393612-17393631 None:intergenic 20.0%
!! TATATGATCAAATACACTAT+TGG - chr2.2:17394205-17394224 MS.gene060599:CDS 20.0%
!! TTAAATATTGATCAACCAAA+AGG + chr2.2:17393613-17393632 None:intergenic 20.0%
!! TTTCATTACTACAAAATTGA+AGG - chr2.2:17394172-17394191 MS.gene060599:CDS 20.0%
!!! ATGGTTTTAATTGATACTAA+AGG - chr2.2:17393548-17393567 MS.gene060599:CDS 20.0%
! CAAACAAACACTTCAAATAA+AGG - chr2.2:17393491-17393510 MS.gene060599:CDS 25.0%
! TAGTGTTGTAAAAACAAATC+TGG + chr2.2:17393301-17393320 None:intergenic 25.0%
! TCAGAAAAAGAAAATGTTGA+TGG - chr2.2:17393668-17393687 MS.gene060599:CDS 25.0%
!! AATGATACTTTTACCAAAAG+TGG + chr2.2:17393864-17393883 None:intergenic 25.0%
!! GATCAATATTTAAAGCCTAA+TGG - chr2.2:17393620-17393639 MS.gene060599:CDS 25.0%
!! TATTTTCTAGATGTTCAAGA+TGG - chr2.2:17393956-17393975 MS.gene060599:CDS 25.0%
!!! ACTTTTGGTAAAAGTATCAT+TGG - chr2.2:17393863-17393882 MS.gene060599:CDS 25.0%
!!! ATACTAAAGGTAGTTTTGTT+TGG - chr2.2:17393561-17393580 MS.gene060599:CDS 25.0%
!!! GAAAATGCAACTTTTTCATT+AGG - chr2.2:17393419-17393438 MS.gene060599:CDS 25.0%
AATCCATACTCAAATGATTC+TGG + chr2.2:17393818-17393837 None:intergenic 30.0%
ACTTTAACATATCTTAGGCT+TGG - chr2.2:17393905-17393924 MS.gene060599:CDS 30.0%
ATCAAATACACTATTGGTGA+TGG - chr2.2:17394211-17394230 MS.gene060599:CDS 30.0%
TAATACAAAGCCAAACCTTT+AGG + chr2.2:17393716-17393735 None:intergenic 30.0%
TTTACCAAAAGTGGTAGAAT+TGG + chr2.2:17393855-17393874 None:intergenic 30.0%
! AAAGTTGCATTTTCATCAAC+TGG + chr2.2:17393413-17393432 None:intergenic 30.0%
! AAGTTGCATTTTCATCAACT+GGG + chr2.2:17393412-17393431 None:intergenic 30.0%
! GTTAAAGTACTATTCTTCAC+TGG + chr2.2:17393893-17393912 None:intergenic 30.0%
!! GCTTGGTTTTCATTTGAAAA+AGG - chr2.2:17393761-17393780 MS.gene060599:CDS 30.0%
!! TTGGTAAAAGTATCATTGGT+AGG - chr2.2:17393867-17393886 MS.gene060599:CDS 30.0%
!!! AATATTGGTTTTCATCTGCT+TGG - chr2.2:17393744-17393763 MS.gene060599:CDS 30.0%
!!! ACTTTTTCATTAGGTGTTGA+TGG - chr2.2:17393428-17393447 MS.gene060599:CDS 30.0%
ACCATTTGAGAGTAACCTTA+AGG + chr2.2:17393525-17393544 None:intergenic 35.0%
ATGCTGATGGAAGAATTGTT+TGG - chr2.2:17393468-17393487 MS.gene060599:CDS 35.0%
CAGAGAGATGTGGAAAATTT+GGG - chr2.2:17394041-17394060 MS.gene060599:CDS 35.0%
GATCCAGAATCATTTGAGTA+TGG - chr2.2:17393812-17393831 MS.gene060599:CDS 35.0%
GTTACTCTCAAATGGTAACA+TGG - chr2.2:17393529-17393548 MS.gene060599:CDS 35.0%
TAGATGTTCAAGATGGTGTT+TGG - chr2.2:17393963-17393982 MS.gene060599:CDS 35.0%
TATCTTAGGCTTGGAATTGA+TGG - chr2.2:17393914-17393933 MS.gene060599:CDS 35.0%
TGGAGAATGGAATATTTGGT+TGG - chr2.2:17394098-17394117 MS.gene060599:CDS 35.0%
TGTGAGGATAATCAATGTGT+TGG - chr2.2:17394067-17394086 MS.gene060599:CDS 35.0%
TTGTGGAAACAAATGTACCA+AGG - chr2.2:17394249-17394268 MS.gene060599:CDS 35.0%
TTTGCAAACTCTTACTAGAG+TGG - chr2.2:17394333-17394352 MS.gene060599:CDS 35.0%
! AAACGTCTGAAGAGCTTTTT+CGG - chr2.2:17393360-17393379 MS.gene060599:CDS 35.0%
! TGTTGATGGAAATCTTGTGT+TGG - chr2.2:17393442-17393461 MS.gene060599:CDS 35.0%
! TGTTGGGTATTTCTACCATA+AGG - chr2.2:17394282-17394301 MS.gene060599:CDS 35.0%
!! AGCCTACTAACAAGTTTTGA+AGG + chr2.2:17393647-17393666 None:intergenic 35.0%
!! ATAAAGGTGTTGTTGCCTTA+AGG - chr2.2:17393507-17393526 MS.gene060599:CDS 35.0%
!! GTCCTTCAAAACTTGTTAGT+AGG - chr2.2:17393642-17393661 MS.gene060599:CDS 35.0%
!! TGGTCCTTATAGTTTGGTTT+TGG - chr2.2:17393688-17393707 MS.gene060599:CDS 35.0%
!! TGTTGATGGTCCTTATAGTT+TGG - chr2.2:17393682-17393701 MS.gene060599:CDS 35.0%
!!! ACAAGTTTTGAAGGACCATT+AGG + chr2.2:17393638-17393657 None:intergenic 35.0%
AACACCTTGAGTCATCCTTA+TGG + chr2.2:17394300-17394319 None:intergenic 40.0%
AAGTGTAGTCCTAAGCCTTT+AGG - chr2.2:17394127-17394146 MS.gene060599:CDS 40.0%
ATAAGGATGACTCAAGGTGT+TGG - chr2.2:17394299-17394318 MS.gene060599:CDS 40.0%
CCAAATATTCCATTCTCCAG+AGG + chr2.2:17394097-17394116 None:intergenic 40.0%
CCAGAGAGATGTGGAAAATT+TGG - chr2.2:17394040-17394059 MS.gene060599:CDS 40.0%
GCCTTAAGGTTACTCTCAAA+TGG - chr2.2:17393521-17393540 MS.gene060599:CDS 40.0%
GGAGTAAGCGAAGTTAATTG+TGG - chr2.2:17394232-17394251 MS.gene060599:CDS 40.0%
GGCTCCAAAACCAAACTATA+AGG + chr2.2:17393695-17393714 None:intergenic 40.0%
TCTACCATAAGGATGACTCA+AGG - chr2.2:17394293-17394312 MS.gene060599:CDS 40.0%
TTCACTCTAGCACTTCGAAT+GGG - chr2.2:17393332-17393351 MS.gene060599:CDS 40.0%
! CCAAATTTTCCACATCTCTC+TGG + chr2.2:17394043-17394062 None:intergenic 40.0%
! CCTCTGGAGAATGGAATATT+TGG - chr2.2:17394094-17394113 MS.gene060599:CDS 40.0%
! GTTGCCAATTCTACCACTTT+TGG - chr2.2:17393848-17393867 MS.gene060599:CDS 40.0%
! TACGCATGTGGGTTATATCA+AGG - chr2.2:17394363-17394382 MS.gene060599:CDS 40.0%
! TCATCCTACAGATACCCTTT+TGG - chr2.2:17393595-17393614 MS.gene060599:CDS 40.0%
! TGGAAAATTTGGGCTTTGTG+AGG - chr2.2:17394051-17394070 MS.gene060599:CDS 40.0%
!! TCAACCAAAAGGGTATCTGT+AGG + chr2.2:17393602-17393621 None:intergenic 40.0%
!!! AGTTTGGTTTTGGAGCCTAA+AGG - chr2.2:17393698-17393717 MS.gene060599:CDS 40.0%
!!! TGCTAGAGTGAAGGCATTTT+GGG + chr2.2:17393324-17393343 None:intergenic 40.0%
ACCAAGGATTGCAAGTGTGT+TGG - chr2.2:17394265-17394284 MS.gene060599:CDS 45.0%
AGTGGCAAATACTACGCATG+TGG - chr2.2:17394351-17394370 MS.gene060599:CDS 45.0%
CATACTCCTCCTAAAGGCTT+AGG + chr2.2:17394139-17394158 None:intergenic 45.0%
CCAAGGATTGCAAGTGTGTT+GGG - chr2.2:17394266-17394285 MS.gene060599:CDS 45.0%
CTTCACTCTAGCACTTCGAA+TGG - chr2.2:17393331-17393350 MS.gene060599:CDS 45.0%
GCATTGCATACTCCTCCTAA+AGG + chr2.2:17394145-17394164 None:intergenic 45.0%
GTGGCAAATACTACGCATGT+GGG - chr2.2:17394352-17394371 MS.gene060599:CDS 45.0%
TGGGTTTGGGAAGCAAATAG+AGG - chr2.2:17393383-17393402 MS.gene060599:CDS 45.0%
TGTAGTCCTAAGCCTTTAGG+AGG - chr2.2:17394130-17394149 MS.gene060599:CDS 45.0%
TGTCAATTGCCAGAGAGATG+TGG - chr2.2:17394031-17394050 MS.gene060599:CDS 45.0%
! CATTCGAAGTGCTAGAGTGA+AGG + chr2.2:17393333-17393352 None:intergenic 45.0%
!! CTTGTGTTGGCTAATGCTGA+TGG - chr2.2:17393455-17393474 MS.gene060599:CDS 45.0%
!! TCAATGTGTTGGTTGTCCTC+TGG - chr2.2:17394078-17394097 MS.gene060599:CDS 45.0%
!!! AAGAGCTTTTTCGGTGGGTT+TGG - chr2.2:17393369-17393388 MS.gene060599:CDS 45.0%
!!! AGAGCTTTTTCGGTGGGTTT+GGG - chr2.2:17393370-17393389 MS.gene060599:CDS 45.0%
!!! GGTTTTGGAGCCTAAAGGTT+TGG - chr2.2:17393703-17393722 MS.gene060599:CDS 45.0%
!!! GTCTGAAGAGCTTTTTCGGT+GGG - chr2.2:17393364-17393383 MS.gene060599:CDS 45.0%
!!! GTGCTAGAGTGAAGGCATTT+TGG + chr2.2:17393325-17393344 None:intergenic 45.0%
CCCAACACACTTGCAATCCT+TGG + chr2.2:17394269-17394288 None:intergenic 50.0%
! GTTGGTTGTCCTCTGGAGAA+TGG - chr2.2:17394085-17394104 MS.gene060599:CDS 50.0%
!!! CGTCTGAAGAGCTTTTTCGG+TGG - chr2.2:17393363-17393382 MS.gene060599:CDS 50.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 17393275 17394399 17393275 ID=MS.gene060599
chr2.2 mRNA 17393275 17394399 17393275 ID=MS.gene060599.t1;Parent=MS.gene060599
chr2.2 exon 17393275 17394399 17393275 ID=MS.gene060599.t1.exon1;Parent=MS.gene060599.t1
chr2.2 CDS 17393275 17394399 17393275 ID=cds.MS.gene060599.t1;Parent=MS.gene060599.t1
Gene Sequence

>MS.gene060599

ATGGGCATAATCACTGTTTCATTCCAGATTTGTTTTTACAACACTACCCAAAATGCCTTCACTCTAGCACTTCGAATGGGATTTGAAACGTCTGAAGAGCTTTTTCGGTGGGTTTGGGAAGCAAATAGAGGCAACCCAGTTGATGAAAATGCAACTTTTTCATTAGGTGTTGATGGAAATCTTGTGTTGGCTAATGCTGATGGAAGAATTGTTTGGCAAACAAACACTTCAAATAAAGGTGTTGTTGCCTTAAGGTTACTCTCAAATGGTAACATGGTTTTAATTGATACTAAAGGTAGTTTTGTTTGGCAAAGTTTTGATCATCCTACAGATACCCTTTTGGTTGATCAATATTTAAAGCCTAATGGTCCTTCAAAACTTGTTAGTAGGCTTTCAGAAAAAGAAAATGTTGATGGTCCTTATAGTTTGGTTTTGGAGCCTAAAGGTTTGGCTTTGTATTATAAGAGTAAATATTGGTTTTCATCTGCTTGGTTTTCATTTGAAAAAGGCTCACTAAAAAATGTCACACTCAAATCTGATCCAGAATCATTTGAGTATGGATTTGATTTTTTTGTTGCCAATTCTACCACTTTTGGTAAAAGTATCATTGGTAGGCCAGTGAAGAATAGTACTTTAACATATCTTAGGCTTGGAATTGATGGTAACATCAGATTTTACACATATTTTCTAGATGTTCAAGATGGTGTTTGGAAAGTGACATACACTCTCTTTGATAGAGATTTTGATGAGAGTGAGTGTCAATTGCCAGAGAGATGTGGAAAATTTGGGCTTTGTGAGGATAATCAATGTGTTGGTTGTCCTCTGGAGAATGGAATATTTGGTTGGAGTAATAAGTGTAGTCCTAAGCCTTTAGGAGGAGTATGCAATGCAAGTAAATTTCATTACTACAAAATTGAAGGAGTTGAGCATTATATGATCAAATACACTATTGGTGATGGAGTAAGCGAAGTTAATTGTGGAAACAAATGTACCAAGGATTGCAAGTGTGTTGGGTATTTCTACCATAAGGATGACTCAAGGTGTTGGATAGCTTATGATTTGCAAACTCTTACTAGAGTGGCAAATACTACGCATGTGGGTTATATCAAGGTGCCTAATAAGTAA
Protein sequence

>MS.gene060599.t1

MGIITVSFQICFYNTTQNAFTLALRMGFETSEELFRWVWEANRGNPVDENATFSLGVDGNLVLANADGRIVWQTNTSNKGVVALRLLSNGNMVLIDTKGSFVWQSFDHPTDTLLVDQYLKPNGPSKLVSRLSEKENVDGPYSLVLEPKGLALYYKSKYWFSSAWFSFEKGSLKNVTLKSDPESFEYGFDFFVANSTTFGKSIIGRPVKNSTLTYLRLGIDGNIRFYTYFLDVQDGVWKVTYTLFDRDFDESECQLPERCGKFGLCEDNQCVGCPLENGIFGWSNKCSPKPLGGVCNASKFHYYKIEGVEHYMIKYTIGDGVSEVNCGNKCTKDCKCVGYFYHKDDSRCWIAYDLQTLTRVANTTHVGYIKVPNK